dan_1751

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCTGCATTCCGGCCAATCTGCCACCGCCGACGTACACAAGCGAGCTTTTTGTGAGTGGCGGGTGATACGACGACTGCTTTTAGTTCGATTCGCTGGCTGAACGCATGCGGTAAGCCGCTGCCGCTGCTCCTGCTTCCCGTCTCTTCTCTTCGCGCCCCCACCACCTCGCCAAAGGTTATTATCCAAGGGGCAACGTGTCAACGCTTCTTCGTCTTTGCCGTCACAAGTGTAAACAATGGCCATCTACTTAG ************************************************************************************************....(((.((((((......)))))))))..........................(((((.........(((...)))..........)))))....******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V105 male body	V106 head	V039 embryo	V055 head
..................................................................................................GAACGCATGCGGTAAGCCG......................................................................................................................................	19	0	1	2.00	2	0	0	0	2	0	0
.....................................................................................CTATTCGCTGGCTGAACGCATGC...............................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................................GTAAGCCGCTGCCGCTGCTCC.........................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................GCCGCTGCTCCTGCTTCCCGTCTCTT..........................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................GTTATTATCCAAGGGGCAACG........................................................	21	0	1	1.00	1	1	0	0	0	0	0
...........................................................................................GCTGGCTGAACGCATGCGGTAAGC........................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0
...........................................................................................GCTGGCTGAACGCATGCGG.............................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................AGTTTGAACAATGGCGATCTACT...	23	3	1	1.00	1	0	0	1	0	0	0
..............................................................................................GGCTGAACGCATGCGGTAAGC........................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CTTCGCGCCCCCACCACCTCGCC.................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................AGGTTTATTATCCAAGGAGCA...........................................................	21	3	1	1.00	1	0	0	1	0	0	0
........................................................................................TTCGCTGGCTGAACGCATGCGGTAAGCC.......................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.................................................................................AGCTCGATTCGCTGGCTGAA......................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................TCTTCGTGCGCCTACCACCTCGC..................................................................................	23	3	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................ATGCAAGGGGCAGCGTGT.....................................................	18	2	3	0.33	1	0	0	0	0	0	1
...................................................................................................................................................................................................TGTCACCGCTTCGTCGCCTTT...................................	21	3	5	0.20	1	1	0	0	0	0	0
...........................................................................................GCTGGCTGAAAGAATGCGCT............................................................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0
...GCATTGCGGCGAAGCTGCCA....................................................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	1
........................................................GGCGGGTGAAACGAAGGCT................................................................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	1

CGACGTAAGGCCGGTTAGACGGTGGCGGCTGCATGTGTTCGCTCGAAAAACACTCACCGCCCACTATGCTGCTGACGAAAATCAAGCTAAGCGACCGACTTGCGTACGCCATTCGGCGACGGCGACGAGGACGAAGGGCAGAGAAGAGAAGCGCGGGGGTGGTGGAGCGGTTTCCAATAATAGGTTCCCCGTTGCACAGTTGCGAAGAAGCAGAAACGGCAGTGTTCACATTTGTTACCGGTAGATGAATC ******************************************************....(((.((((((......)))))))))..........................(((((.........(((...)))..........)))))....************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M044 female body	V055 head
.............GTTACACGGTGGCGGGTCCAT.........................................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0
............................................................................................................................ACGAGAACGAAGGCCTGAGAA..........................................................................................................	21	3	4	0.25	1	0	0	1
.....................................................................................................................................................................................................................AAACGGCAGTGTTCCTATT...................	19	2	4	0.25	1	0	1	0
.........................................................................................................................................................CGGGGGTAGTGGAACGGTT...............................................................................	19	2	7	0.14	1	0	1	0
.............GTTACACGGTGGCGGGTCCA..........................................................................................................................................................................................................................	20	3	8	0.13	1	1	0	0
..........................................................................................................................................................GGGGGTAGTGGAACGGTT...............................................................................	18	2	20	0.10	2	0	2	0
.....................................................................................................GCGCACGCCATTATGCGA....................................................................................................................................	18	3	16	0.06	1	0	0	1
................................................................................................................................................................................CCAGTAGGTTCCCCGTTGC........................................................	19	3	17	0.06	1	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:3074639-3074889 -	dan_1751	GC-TGCATTCCGGCCAATCTGCCACCGCCGACGTACACAAGCGAGCTTTTTGTGAG----------------TGGCGGGTGATACGACGACTGCTTTTAGTTCGA-TTCGCTGGCTGAACGCATGCGGTAAGCCGCTGCCGCTGCTC-----CTGCTTCCCGTCT-C--TTCTCTTCGCGCCC-------------------------------------------CCA-----CCACCTCG---C--CAAAGG----TTATTATCCAAGGGGCAACGTGTCAACG-------------CTTC--TTCGTCTTTGCCGT-CACAAGTGTAAACAA-TGGCCATCTACTTAG
droBip1	scf7180000396427:1539660-1539912 -		GC-TGCATTATGGCCAAGCTGCCACCGCCGACGTACACAAGCGAGCTTTTTGTGAG----------------TGGCGGGTGATA---CGGCTGCTTTTAGTTCGA-TTCGCTGGCTGAACGCATGCGGTAAGCCGCTGCTGCTGCTCGTCTGCTGCTTCC-----C--TCATCTCTTCTC---------------------------------------------TCGCTCGCCCCACCTCG---C--CAAAGG----TTACTATCCAAGGGGCAACGTGTCAACG-------------CTTC--TTCGTCTTCGACGT-CAAAAGTGTAAACAAATGGCCTCTTACTTAG
droKik1	scf7180000302471:660249-660456 +		A------------------------------------CAGGCAAGCTTTTGGCGAGGGCGCTTTAGCTTCAGCGGC-------------GCCGCTTTCAGTTTGTTTTCTCTGGCTGAACG----CGGTGAGCCGCTGCTGCTGC------TGCGCTTC------TCTTTCCTCCCCCACC-------------------------------------------------------GT-----CCA--C-GGGGCTGCC---CATTCAAGGGGCAACGTGTCAACA------GCGTCTTCCTCTTTTCATCTTCGCCGT-CAGAAGTGTAAACAA-TGG-G---TACCTAG
droFic1	scf7180000454039:1498716-1498955 +		TC-CGAAAAACATCCAAGTGGTCATCACAGCTG---GCTGACAAGCTTTTGGCGAG----------------CGACGG---------CCACCGTTTTCAGTTCGA-TTTTTTTTCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCTCTGCTC----------------------GTAC------------CGCT-CCGCCCGCTCTCT-CCAT----------------------CAAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTCCACCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG
droEle1	scf7180000491201:446262-446500 +		TC-TGGAAAAAGGCCAAGTGCTCATCACCGATG---GCGGACGAGCTTTTGACGAG----------------CGGCGG---------TGGCCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCCTC------C--TTCCCGCTCCGCTCCG----------A-------------------------CGTT-CCGCCCGCTCTCT-CTGC----------------------CAAAGGGGCAACGTGTCAACG------GCGCCTTCTTCTTGTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG
droRho1	scf7180000777843:44522-44770 -		TC-TGGAAAACGGCCAAGTTGTTATCACCGCTA---ACGGACGAGCTTTTGGCGAG----------------CGGTGG---------CGGCCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCCTC------T--TTCCCGCTCCGCTCC----------GACCACTC---TGAC------------CGCT-CCGCCCGCTCTCT-CCGC----------------------CAAAGGGGCAACGTGTCAACG------GCGCCTTCTTATTTTCATCTCCACCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG
droBia1	scf7180000302291:3104846-3105090 -		GC------------CAGATGGTCATCACCGCCG---TCGGACGAGCTTTTGGCGAG----------------CGGCGC---------CCGCTGCTGTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCCCCGCTGT----------GACCGCTC---CGAACGCTCGT-----CGCT-CCGCCCGCTCTCT-CCAA----------------------GGAAGGGGCAACGTGTCAACG------GCATCTTCTTCTTTTCATCTCCGCCGC-GAAAAGTGTAAACAA-TGG-GTCTTACTTAG
droTak1	scf7180000415159:232871-233116 -		-------------------------CACCGTTG---GCGGATGAGCTTTTGGCGAG----------------CGGCGT---------CCGCTGCTTTCAGTCGAA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCTCCGCTGT----------GACCGCCCGACCGACCGCTCGTTCGTCCGCT-CCGCCCGCTCTCT-CCAA----------------------CGAAGGGGCAACGTGTCAACGGCAACGGCGTCTTCTTCTTTTCATCTCCGCCGA-GAAAAGTGTAAACAA-TGG-ATCTTACTTAC
droEug1	scf7180000409474:1767522-1767760 -		TC-TGGAACGCAGTCAAGTCGTCATCACTGTTG---GCTATGGAGCTTTTGGCGAG----------------CGGTGG---------CTGCCGCTTTCAGTTCGA-TTCTCTGGTCGAACGCGTGCGG--AGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCTCCACT-------------------------------------------------------CT-CCAACAAAAA-GGGGCTGACTGCCGTCCAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGG-ATTCTACTTAG
dm3	chr2R:16207934-16208215 +		AC-GTTAACTTAGACAGGTGGTCATCGCCGCTG---ACTATCGAGCTTTTCGCGAG----------------CGGCGC---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------C--TTACCGCTTCACTCTGTGT--GACCGACCGCTCGACGGAC------------CGTTCCCGCCCGCTCTCT-CCGTCGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTGCGCCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG
droSim2	2r:16787882-16788162 +		TC-GTTAACTTAGACAGGTGGTCATCGCCGCTG---ACTACCGAGCTTTTCGCGAG----------------CGGCGC---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------C--TTACCGCTTCACTCTATCT------GACCGCTCGACGGACCAC---------CGTTCCCGCCCGCTCTCT-CCGTCGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTGCGCCGT-GAAAAGTGTAAACAA-TGG-ATCCTACTTAG
droSec2	scaffold_1:13773837-13774114 +		TC-GTTAACTTAGACAGGTGGTCATCGCCGCTG---ACTACCGAGCTTTTCGCGAG----------------CGGCGC---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------C--TTACAGCTTCACTCTATCT------GACCGCTCGACGGAC------------CGTTCCCGCCCGCTCTCT-CCGTCGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTGCGCCGT-GAAAAGTGTAAACAA-TGG-ATCCTACTTAG
droYak3	2R:12994489-12994773 -		GTTGTCATTTTAGACAGGTGACCATCTCCGCTG---ACTACCAAGCTTTTTGCGAG----------------CGGCGG---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------T--TTACCGCTACACTCTGTGTCTGTGTGACCGCTCGACGGAC------------CGTTCCCGCCCGCTCTCT-CCGACGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCATTTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG
droEre2	scaffold_4845:10359334-10359611 +		TC-GTGAATTCCGACAGGTGAACATCGCCGCTA---ACTGCCGAGCTTTCCGCGAG----------------CGGCGG---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCTGCTGCTGCTGC------GCTGCTAC------C--TTACCGCTCCACTCTGTGC------GACCGCTCGACGGAC------------CGCTCCCGCCCGCTCTCT-CCAACGAAAA-GGGGCCGCCCGCCGTTTAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGC-CTCTTACTTAC
dp5	3:10263302-10263446 +		---------------------------------------------------------------------------------------------------------------------AACGCGTGCCGAAAGCTACAGCTGC---CT-----CTGCTTGCTGCTG-C--TGCCGCTTGAGTCC--------------------------------------------------------------A--CGGGG---GCCTGCCGCAAAAGGGGCGACGTGTCAACC------G--CCTTCTTC--TTCGTGTTCGCCTTCGAAAACTGTAAACAA-TGGCATTTTACTTAA
droPer2	scaffold_4:5594804-5594947 +		---------------------------------------------------------------------------------------------------------------------AACGCGTGCCGAAAGCTACAGCTGC---CT-----CTGCTTGCTGCTG-C--TGCCGCTTGT---------------------------------------------------------GT-----CCA--CGGGGG----CTGCCGCAAAAGGGGCGACGTGTCAACA------GC--CTTCTTC--TTCGTGTTCGCCTTCGAAAACTGTAAACAA-TGGCATTTTACTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GC-TGCATTCCGGCCAATCTGCCACCGCCGACGTACACAAGCGAGCTTTTTGTGAG----------------TGGCGGGTGATACGACGACTGCTTTTAGTTCGA-TTCGCTGGCTGAACGCATGCGGTAAGCCGCTGCCGCTGCTC-----CTGCTTCCCGTCT-C--TTCTCTTCGCGCCC-------------------------------------------CCA-----CCACCTCG---C--CAAAGG----TTATTATCCAAGGGGCAACGTGTCAACG-------------CTTC--TTCGTCTTTGCCGT-CACAAGTGTAAACAA-TGGCCATCTACTTAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................GAACGCATGCGGTAAGCCG........................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................GTAAGCCGCTGCCGCTGCTC-----C......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................GCCGCTGCTC-----CTGCTTCCCGTCT-C--TT....................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................G----TTATTATCCAAGGGGCAACG.........................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................GCTGGCTGAACGCATGCGGTAAGC..........................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................GCTGGCTGAACGCATGCGG...............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................GGCTGAACGCATGCGGTAAGC..........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................CTTCGCGCCC-------------------------------------------CCA-----CCACCTCG---C--C......................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................TTCGCTGGCTGAACGCATGCGGTAAGCC.........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0

droBip1

GC-TGCATTATGGCCAAGCTGCCACCGCCGACGTACACAAGCGAGCTTTTTGTGAG----------------TGGCGGGTGATA---CGGCTGCTTTTAGTTCGA-TTCGCTGGCTGAACGCATGCGGTAAGCCGCTGCTGCTGCTCGTCTGCTGCTTCC-----C--TCATCTCTTCTC---------------------------------------------TCGCTCGCCCCACCTCG---C--CAAAGG----TTACTATCCAAGGGGCAACGTGTCAACG-------------CTTC--TTCGTCTTCGACGT-CAAAAGTGTAAACAAATGGCCTCTTACTTAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A------------------------------------CAGGCAAGCTTTTGGCGAGGGCGCTTTAGCTTCAGCGGC-------------GCCGCTTTCAGTTTGTTTTCTCTGGCTGAACG----CGGTGAGCCGCTGCTGCTGC------TGCGCTTC------TCTTTCCTCCCCCACC-------------------------------------------------------GT-----CCA--C-GGGGCTGCC---CATTCAAGGGGCAACGTGTCAACA------GCGTCTTCCTCTTTTCATCTTCGCCGT-CAGAAGTGTAAACAA-TGG-G---TACCTAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TC-CGAAAAACATCCAAGTGGTCATCACAGCTG---GCTGACAAGCTTTTGGCGAG----------------CGACGG---------CCACCGTTTTCAGTTCGA-TTTTTTTTCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCTCTGCTC----------------------GTAC------------CGCT-CCGCCCGCTCTCT-CCAT----------------------CAAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTCCACCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TC-TGGAAAAAGGCCAAGTGCTCATCACCGATG---GCGGACGAGCTTTTGACGAG----------------CGGCGG---------TGGCCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCCTC------C--TTCCCGCTCCGCTCCG----------A-------------------------CGTT-CCGCCCGCTCTCT-CTGC----------------------CAAAGGGGCAACGTGTCAACG------GCGCCTTCTTCTTGTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TC-TGGAAAACGGCCAAGTTGTTATCACCGCTA---ACGGACGAGCTTTTGGCGAG----------------CGGTGG---------CGGCCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCCTC------T--TTCCCGCTCCGCTCC----------GACCACTC---TGAC------------CGCT-CCGCCCGCTCTCT-CCGC----------------------CAAAGGGGCAACGTGTCAACG------GCGCCTTCTTATTTTCATCTCCACCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GC------------CAGATGGTCATCACCGCCG---TCGGACGAGCTTTTGGCGAG----------------CGGCGC---------CCGCTGCTGTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCCCCGCTGT----------GACCGCTC---CGAACGCTCGT-----CGCT-CCGCCCGCTCTCT-CCAA----------------------GGAAGGGGCAACGTGTCAACG------GCATCTTCTTCTTTTCATCTCCGCCGC-GAAAAGTGTAAACAA-TGG-GTCTTACTTAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------------CACCGTTG---GCGGATGAGCTTTTGGCGAG----------------CGGCGT---------CCGCTGCTTTCAGTCGAA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCTCCGCTGT----------GACCGCCCGACCGACCGCTCGTTCGTCCGCT-CCGCCCGCTCTCT-CCAA----------------------CGAAGGGGCAACGTGTCAACGGCAACGGCGTCTTCTTCTTTTCATCTCCGCCGA-GAAAAGTGTAAACAA-TGG-ATCTTACTTAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TC-TGGAACGCAGTCAAGTCGTCATCACTGTTG---GCTATGGAGCTTTTGGCGAG----------------CGGTGG---------CTGCCGCTTTCAGTTCGA-TTCTCTGGTCGAACGCGTGCGG--AGCCGCTGCTGCTGC------GCCGCTTC------T--TTCCCGCTCCACT-------------------------------------------------------CT-CCAACAAAAA-GGGGCTGACTGCCGTCCAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGG-ATTCTACTTAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AC-GTTAACTTAGACAGGTGGTCATCGCCGCTG---ACTATCGAGCTTTTCGCGAG----------------CGGCGC---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------C--TTACCGCTTCACTCTGTGT--GACCGACCGCTCGACGGAC------------CGTTCCCGCCCGCTCTCT-CCGTCGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTGCGCCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................GCTGAACGCGTGCGGTGAGCCG........................................................................................................................................................................................................................	22	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1	4	1	0	0	2	2	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACG......................................................................................................................................................................................................................................	22	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
.....................................................................................................................AACGCGTGCGGTGAGCCG........................................................................................................................................................................................................................	18	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACGCG....................................................................................................................................................................................................................................	24	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GAACGCGTGCGGTGAGCCG........................................................................................................................................................................................................................	19	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................ACGCGTGCGGTGAGCCGC.......................................................................................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GGCTGAACGCGTGCGGTG.............................................................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACGCGTG..................................................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0
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.............................................................................................................................................................................GCTTCACTCTGTGT--GACC..............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................ACCGCTTCACTCTGTGT--G.................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GCTGAACGCGTGCGGTGAGCCGCT......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TAC------C--TTACCGCTTCACTCTGT......................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TGGCTGAACGCGTGCGGTGAGCCG........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CCGCCCGCCGCTGAAGGGGT.............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AACGCGTGCGGTGAGCCC........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAA........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GCTGCTGCTGC------GCTGCTA.................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TC-GTTAACTTAGACAGGTGGTCATCGCCGCTG---ACTACCGAGCTTTTCGCGAG----------------CGGCGC---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------C--TTACCGCTTCACTCTATCT------GACCGCTCGACGGACCAC---------CGTTCCCGCCCGCTCTCT-CCGTCGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTGCGCCGT-GAAAAGTGTAAACAA-TGG-ATCCTACTTAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................ACCGCTCGACGGACCAC---------CG.................................................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TCGA-TTCTCTGGCTGAACGCGTG..................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................................................................................................CTTCACTCTATCT------GACCG.........................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TCGA-TTCTCTGGCTGAACGCG....................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................ACCGCTCGACGGACCAC---------CGTTCCCG...........................................................................................................................	25	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACG......................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................CGCTCGACGGACCAC---------CGT................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTG..........................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GACCGCTCGACGGACCAC---------C..................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TGAAGGGGCAACGTGTCAACG------GC.........................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GCGTGCGGTGAGCCGCT......................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................GA-TTCTCTGGCTGAACGC.....................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GGTGAGCCGCTGCTGCTG...............................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................CTCTGGCTGAACGCGTGCGGTGAGC..........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTCTCTGGCTGAACGCGTGCGGTGA............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTCACTCTATCT------GACCGCTCGAC...................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACGC.....................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................GCTGCTGC------GCTGCTAC------C--T......................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GACCGCTCGACGGACCAC---------CGT................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CATCTGCGCCGT-GAAAAGT........................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTCTTCTTCTTTTCATCTGCGCCGT-...............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTCTTCTTCTTTTCATCTGCGCCGG-...............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GA-TTCTCTGGCTGAACG......................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................CGCTCGACGGACCAC---------CGTTCCCGCC.........................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AACGCGTGCGGTGAGCCG........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................GGCTGAACGCGTGCT................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................CAGTTCGA-TTCTCTGGCC...........................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TC-GTTAACTTAGACAGGTGGTCATCGCCGCTG---ACTACCGAGCTTTTCGCGAG----------------CGGCGC---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------C--TTACAGCTTCACTCTATCT------GACCGCTCGACGGAC------------CGTTCCCGCCCGCTCTCT-CCGTCGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTGCGCCGT-GAAAAGTGTAAACAA-TGG-ATCCTACTTAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................AACGCGTGCGGTGAGCCG........................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	1
...............................................................................................................TGGCTGAACGCGTGCGGTGAG...........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
..................................................................................................................CTGAACGCGTGCGGTGAGCC.........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................CTCGACGGAC------------CGTTCCCGCCCGCTCTCT-................................................................................................................	28	1	1.00	1	1	0	0	0
.....................................................................................................................AACGCGTGCGGTGAGCTA........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................CTTCTTTTCATCTGCGCCGT-GAAAA..........................	25	1	1.00	1	0	1	0	0
................................................................................................................GGCTGAACGCGTGCGGTGAGCCGCTG.....................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...........................................................................................................................TGCGGTGAGCCGCTGCTGCTGC------GCTG....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
...........................................................................................................................TGCGGTGAGCCGCTGCTGCTGC------GCT.....................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................................GAAGGGGCAACGTGTCAACG------GC.........................................................	22	1	1.00	1	0	0	1	0
.........................................................................................................................CGTGCGGTGAGCCGCTGCTGCTG...............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...............................................................................................................................................................................TTCACTCTATCT------GACCGCT.......................................................................................................................................................	19	1	1.00	1	0	0	0	1
.................................................................................................................GCTGAACGCGTGCGGTGAGCCGCTGCTG..................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..................................................................................................................................................................................ACTCTATCT------GACCGCTCGAC...................................................................................................................................................	20	1	1.00	1	1	0	0	0
..............................................................................................................CTGGCTGAACGCGTGCGGTGAGCCGCTG.....................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAA........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................................................................................................GCTGAACGCGTGCGGTGAGCCGCTGC....................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
......................................................................................................................................................................................TATCT------GACCGCTCGACGGAC------------C..................................................................................................................................	21	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................CGCTCTCT-CCGTCGAAAA-G....................................................................................................	19	1	1.00	1	1	0	0	0
......................................................................................................CGA-TTCTCTGGCTGAACGCGTGCGGT..............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..............................................................................................................CTGGCTGAACGCGTGCGGTGA............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................GACCGCTCGACGGAC------------CGTTCC.............................................................................................................................	21	1	1.00	1	0	0	0	1

droYak3

GTTGTCATTTTAGACAGGTGACCATCTCCGCTG---ACTACCAAGCTTTTTGCGAG----------------CGGCGG---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCCGCTGCTGCTGC------GCTGCTAC------T--TTACCGCTACACTCTGTGTCTGTGTGACCGCTCGACGGAC------------CGTTCCCGCCCGCTCTCT-CCGACGAAAA-GGGGCCGCCCGCCGCTGAAGGGGCAACGTGTCAACG------GCGTCTTCTTCATTTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGG-ATCTTACTTAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................TTCGA-TTCTCTGGCTGAA........................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TCTGTGTCTGTGTGACCGCTC......................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GACGAAAA-GGGGCCGCCCGC.........................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CTGCTGC------GCTGCTAC------T--TTACCGCT...............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTGCGGTGAGCCGCTGCTGC.................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TCTGGCTGAACGCGTGCGGTGAGCCGC.......................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACGCG....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................CGTGCGGTGAGCCGCTGCTGCTG...............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................CTGC------GCTGCTAC------T--TTACCG.................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTACACTCTGTGTCTGTGC..............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TTCTTCATTTCATCTCCGCC..................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GCCGT-GAAAAGTGTAAACAA-TGG-A..........	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

TC-GTGAATTCCGACAGGTGAACATCGCCGCTA---ACTGCCGAGCTTTCCGCGAG----------------CGGCGG---------CCACCGCTTTCAGTTCGA-TTCTCTGGCTGAACGCGTGCGGTGAGCTGCTGCTGCTGC------GCTGCTAC------C--TTACCGCTCCACTCTGTGC------GACCGCTCGACGGAC------------CGCTCCCGCCCGCTCTCT-CCAACGAAAA-GGGGCCGCCCGCCGTTTAAGGGGCAACGTGTCAACG------GCGTCTTCTTCTTTTCATCTCCGCCGT-GAAAAGTGTAAACAA-TGC-CTCTTACTTAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................AACGCGTGCGGTGAGCTG........................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	4	0
...................................................................................................................TGAACGCGTGCGGTGAGCTG........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................CCACTCTGTGC------GACCGCTC......................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................CTCTGGCTGAACGCGTGCGGTGAGCTG........................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................AGTTCGA-TTCTCTGGCTGAACGCGTGCG................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................TGCGGTGAGCTGCTGCTGCTGC------GCTG....................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................CTCGACGGAC------------CGCTCCCGCCCG.......................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................TAC------C--TTACCGCTCCACTCTG.......................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................CTTCTTCTTTTCATCTCCGCC..................................	21	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................AACGCGTGCGGTGAGCTGC.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................GTGCGGTGAGCTGCTGCT...................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................CGCTCTCT-CCAACGAAAA-GG...................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................CGTCTTCTTCTTTTCATCTCCGCCGT-...............................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GTGTCAACG------GCGTCTTCTTCTTTT............................................	24	1	1.00	1	0	0	0	0	1	0	0

dp5

---------------------------------------------------------------------------------------------------------------------AACGCGTGCCGAAAGCTACAGCTGC---CT-----CTGCTTGCTGCTG-C--TGCCGCTTGAGTCC--------------------------------------------------------------A--CGGGG---GCCTGCCGCAAAAGGGGCGACGTGTCAACC------G--CCTTCTTC--TTCGTGTTCGCCTTCGAAAACTGTAAACAA-TGGCATTTTACTTAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................GCCGCTTGAGTCC--------------------------------------------------------------A--CGGGG---GCC............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCAAAAGGGGCGACGTGTCAAC..................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GCCTGCCGCAAAAGGGGCGACGTG.......................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CGCAAAAGGGGCGACGTGTCAACC------G--C.......................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................CTTGAGTCC--------------------------------------------------------------A--CGGGG---GCCTGCCGCAAAA..................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................TG-C--TGCCGCTTGAGTCC--------------------------------------------------------------A--CGG....................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................AAAGCTACAGCTGC---CT-----CTGCTTGC...............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AAAAGGGGCGACGTGTCAAC..................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

---------------------------------------------------------------------------------------------------------------------AACGCGTGCCGAAAGCTACAGCTGC---CT-----CTGCTTGCTGCTG-C--TGCCGCTTGT---------------------------------------------------------GT-----CCA--CGGGGG----CTGCCGCAAAAGGGGCGACGTGTCAACA------GC--CTTCTTC--TTCGTGTTCGCCTTCGAAAACTGTAAACAA-TGGCATTTTACTTAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................TTGCTGCTG-C--TGCCGCTTGT---------------------------------------------------------GT-----CCA--.......................................................................................................	25	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................GGG----CTGCCGCAAAAGGGGCG............................................................................	20	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................GCCGCTTGT---------------------------------------------------------GT-----CCA--CGGGGG----CTGC.........................................................................................	24	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................GTCAACA------GC--CTTCTTC--TTCGT.........................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................GGGG----CTGCCGCAAAAGGGGCGA...........................................................................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................GCTTGT---------------------------------------------------------GT-----CCA--CGGGGG----CTGC.........................................................................................	21	1	1.00	1	0	0	1	0	0	0

dan_1751

scaffold_13266:3074689-3074839 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.2	-21.4	-21.3