ID:

dan_1750

 Coordinate:

scaffold_13266:3073351-3073501 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.8 -13.8 -13.6 -13.6

Flybase annnotation

exon [dana_GLEANR_12267:3]; CDS [Dana\GF12261-cds]; intron [Dana\GF12261-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGGCTCGTCTTCAAGTTACGGTCACAGTAACCAGCACTCGTATGTGTCTCGTTCACAACCCTCCCTGGCATCGCTGGTGAATCGTCCCTCTCCCGTGCAGCATCCGCTCTTGCATCGCCCGCCACCCGTACAGCATCCAATTGTGAATCGCCCTCCGCCTGTACAGCATCCGATTGTGAGTGAGTCCTCACCACCACCGCCGCCTCCGCTTCTGAATCGACCGGCATCCGTACAGGCTCAGCTTCAACAGG
*****************************************************************************...................((.(((((.(((..((((..((........((....(((......)))....))......)).)))).)))....))).))..))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V106
head
 V055
head
..................................................................................................................................................................ACAGCATCCGATTGTGAGT...................................................................... 19 0 1 2.00 2 0 0 2 0 0
........CTTCAAGTTACGGTCACAGT............................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.............................................................................TGAATCGTCCCTCTCCCGTGC......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................TGAATCGACCGGCATCCGTACA................. 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................ATCCGCTCTTGCATCGCCCGC................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
.....................................................................................................ATCCGCTCTTGCATCGCCCGCC................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..............................................................................................................TGCATCGCCCGCCACCCGTACAGCATC.................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
.....................................................CACAACCCTCCCTGGCATCGCTGGTGAA.......................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................GCCTCCGCTTCTGAATCGACC............................. 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................ATCCGCTCTTGCATCGCCCGCCA............................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
..................................................GCTCACAACCCTCCCTGGCAT.................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
.............................................GTCTCGTTCACAACCCTCCCTGG....................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................ACCGCCGCCTCCGCTTCTGAATCGAC.............................. 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................CATCCAATTGTGAATCGCCCTCCGCCT........................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................TCTGAATCGACCGGCATCCGTACAGGCT............. 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................CTCTGCTTCTGAATCGACCGGCATCC...................... 26 1 1 1.00 1 0 1 0 0 0
................................................................................................................................................................GTACAGCATCCGATTGTGAGT...................................................................... 21 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................GCATCCGATTGTGAGTGAGTCCTCA............................................................. 25 0 1 1.00 1 0 0 0 1 0
......GTCTTCAAGTTACGGTCACAGT............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
.................................................CGTTCACAACCCTCCCTGGCATCGCTG............................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0
.........................................................ACCCTCCCTGGCATCGCT................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
............................AACCAGCACTCGTATGTGTCC.......................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................................GAATCGACCGGCATCCGTACAG................ 22 0 1 1.00 1 1 0 0 0 0
...............................................................................AATCGTCCCTCTCCCGTGCAGC...................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................ACCGCCGCCTCCGCTTCTGAATCGACCGG........................... 29 0 1 1.00 1 1 0 0 0 0
.......................................................CAACCCTCCCTGGCATCGCTGGTG............................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.................................................................TGGCATCGCTGGTCACTCGT...................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 1
.................................................................................................................................................................................GAATGAATCCTCACCACCACC..................................................... 21 2 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................................TTGTGCGTGAGGCATCACCA.......................................................... 20 3 3 0.33 1 0 0 0 0 1
..................................................................................................................................................................................AATGTGTCCTCACCACCA....................................................... 18 2 5 0.20 1 0 1 0 0 0
................................................................CTGGCATCGTTGGGGAAT......................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0
....................................................TTACAACCGTCGCTGGCATC................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
......................................................................................................TCCGCGCTAGCATCACCCG.................................................................................................................................. 19 3 10 0.10 1 0 0 0 0 1
...............................................................................................................................................................................................CGCCACCGCCGCCTCCGCT......................................... 19 1 14 0.07 1 1 0 0 0 0
............................................................................GTGAGGGGTCCCTCTCCCG............................................................................................................................................................ 19 3 15 0.07 1 0 0 0 1 0
......................................................................................CCTGTCCCGTGGAGCATTC.................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 1
............................................................................................................................................................ACCTGTTCAGCATCCGGTT............................................................................ 19 3 20 0.05 1 0 0 0 0 1
................................................................................................................................................GAATCGCCCCCGGCCTGCA........................................................................................ 19 3 20 0.05 1 0 0 0 0 1
....................................................................................................................................................................................................................................CGTACAGGTTCAACTTCGA.... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CCCGAGCAGAAGTTCAATGCCAGTGTCATTGGTCGTGAGCATACACAGAGCAAGTGTTGGGAGGGACCGTAGCGACCACTTAGCAGGGAGAGGGCACGTCGTAGGCGAGAACGTAGCGGGCGGTGGGCATGTCGTAGGTTAACACTTAGCGGGAGGCGGACATGTCGTAGGCTAACACTCACTCAGGAGTGGTGGTGGCGGCGGAGGCGAAGACTTAGCTGGCCGTAGGCATGTCCGAGTCGAAGTTGTCC
**********************************************************************...................((.(((((.(((..((((..((........((....(((......)))....))......)).)))).)))....))).))..))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V105
male body		 M044
female body
 V106
head
 M058
embryo
.............................................................................................................................................................................................................GGCGAAGCCTTAGCTGGCCA.......................... 20 2 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................ACTCAGGGGTGGTGGTTGC.................................................... 19 2 3 0.67 2 0 0 2 0 0
..................................................................................GCAGGGAGAGCCCAAGTCGTA.................................................................................................................................................... 21 3 3 0.67 2 0 0 0 2 0
....................................................................................................................CTGGCGGTGGGTATGTCCTA................................................................................................................... 20 3 5 0.60 3 0 3 0 0 0
...................................................................................................................................................................................................TGGCGTCGGAGGCGAGGACT.................................... 20 2 2 0.50 1 1 0 0 0 0
.....................AGTGACATTGATCGTGAGCAG................................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0
...................................................................................................................GCTGGCGGTGGGTATGTC...................................................................................................................... 18 2 9 0.11 1 0 0 1 0 0
....................................................................................................................................................................................ACTCAGGGGTGGTGGTTG..................................................... 18 2 9 0.11 1 0 0 1 0 0
..........TGTTCAATCCCAGTGTCAAT............................................................................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0
...............................................GCTCGAGTGTTGGGAGGGA......................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0
....................................................................................................................CTGGCGGTGGGTATGTC...................................................................................................................... 17 2 16 0.06 1 1 0 0 0 0
.............................................CGGGGCAAGGGTTGGGAGGG.......................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 1
...............................................................................................................................................................................................GTGGTAGCGGCGGAGGCAA......................................... 19 2 18 0.06 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:3073301-3073551 - dan_1750 GGGCTCGTCTTCAAGTTACGGTCACAGTAACCAGCACTCGTATGTGTCTCGTTCACAACCCTCCCTGGCATCGCTGGTGAATCGTCCCTCTCCCGTGCAGCATCCGCTCTTGCATCGCCCGCCACCCGTACAGCATCCAATTGTGAATCGCCCTCCGCCTGTACAGCATCCGATTGTGAGTGAGTCCTCACCACCACCGCCGCCTCCGCTTCTGAATCGACCGGCATCCGTACAGGCTCAGCTTCAACAGG
droBip1 scf7180000396427:1538432-1538634 - AGGCCCGACTTCGAACTAC------------------------------------CAAAGGCCTCTGCCATCGATTGTGAACCGTCCTTCTCCCGTTCACCATACGCTGTTGAACCGCCCTCAGCCCGCACGTCCTCCACTAGTGGATTTCCCTCTACCCGTATATCAGCCAACTGTGAATCGTCCTCC---ATCGAACCAGGCTCTGATTGTGAGTCGCCCTCCACCTGCACAGGCCGAA---------G
droEre2 scaffold_4929:13464973-13464991 - AGGCGCAGAGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCG---------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGGCTCGTCTTCAAGTTACGGTCACAGTAACCAGCACTCGTATGTGTCTCGTTCACAACCCTCCCTGGCATCGCTGGTGAATCGTCCCTCTCCCGTGCAGCATCCGCTCTTGCATCGCCCGCCACCCGTACAGCATCCAATTGTGAATCGCCCTCCGCCTGTACAGCATCCGATTGTGAGTGAGTCCTCACCACCACCGCCGCCTCCGCTTCTGAATCGACCGGCATCCGTACAGGCTCAGCTTCAACAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................ACAGCATCCGATTGTGAGT......................................................................1912.002000020
........CTTCAAGTTACGGTCACAGT...............................................................................................................................................................................................................................2011.001100000
.............................................................................TGAATCGTCCCTCTCCCGTGC.........................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................TGAATCGACCGGCATCCGTACA.................2211.001100000
.....................................................................................................ATCCGCTCTTGCATCGCCCGC.................................................................................................................................2111.001010000
.....................................................................................................ATCCGCTCTTGCATCGCCCGCC................................................................................................................................2211.001100000
..............................................................................................................TGCATCGCCCGCCACCCGTACAGCATC..................................................................................................................2711.001010000
.....................................................CACAACCCTCCCTGGCATCGCTGGTGAA..........................................................................................................................................................................2811.001010000
.........................................................................................................................................................................................................GCCTCCGCTTCTGAATCGACC.............................2111.001100000
.....................................................................................................ATCCGCTCTTGCATCGCCCGCCA...............................................................................................................................2311.001100000
.............................................GTCTCGTTCACAACCCTCCCTGG.......................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................ACCGCCGCCTCCGCTTCTGAATCGAC..............................2611.001100000
.....................................................................................................................................CATCCAATTGTGAATCGCCCTCCGCCT...........................................................................................2711.001100000
..................................................................................................................................................................................................................TCTGAATCGACCGGCATCCGTACAGGCT.............2811.001100000
................................................................................................................................................................GTACAGCATCCGATTGTGAGT......................................................................2111.001000010
.....................................................................................................................................................................GCATCCGATTGTGAGTGAGTCCTCA.............................................................2511.001000001
......GTCTTCAAGTTACGGTCACAGT...............................................................................................................................................................................................................................2211.001000010
.................................................CGTTCACAACCCTCCCTGGCATCGCTG...............................................................................................................................................................................2711.001000001
.........................................................ACCCTCCCTGGCATCGCT................................................................................................................................................................................1811.001100000
............................AACCAGCACTCGTATGTGTCC..........................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................GAATCGACCGGCATCCGTACAG................2211.001100000
...............................................................................AATCGTCCCTCTCCCGTGCAGC......................................................................................................................................................2211.001100000
...................................................................................................................................................................................................ACCGCCGCCTCCGCTTCTGAATCGACCGG...........................2911.001100000
.......................................................CAACCCTCCCTGGCATCGCTGGTG............................................................................................................................................................................2411.001100000
droBip1
AGGCCCGACTTCGAACTAC------------------------------------CAAAGGCCTCTGCCATCGATTGTGAACCGTCCTTCTCCCGTTCACCATACGCTGTTGAACCGCCCTCAGCCCGCACGTCCTCCACTAGTGGATTTCCCTCTACCCGTATATCAGCCAACTGTGAATCGTCCTCC---ATCGAACCAGGCTCTGATTGTGAGTCGCCCTCCACCTGCACAGGCCGAA---------GSizeHit CountTotal NormTotal
No Reads
droEre2
AGGCGCAGAGTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCG---------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 02:52 AM