dan_1740

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTGGCTCGCTTCACCGCCGATGTCATCGGGAGCTGCGCCTTTGGCCTTGATTGCCATTGTCTGAAGGACCCCAAGGCGGAGTTTGTCAAAATGGGAGTGTCTGCCATCACCGAACGGCGACATGGAAGAGCCATGGACCTCTTCTTGTTTGGGGCTCCCAAATTGGCGGCCAAGCTACGCATGAAGGCCAATGTGCAAAAGGTCGAGGATTTCTATATGAACATCATCAAGGACACAGTGGATTATCGAGT *********************************************************************************.(((((..(((((((.((.(((..........)))((((.(((((((........))))))))))).)).)))))))..)))))((((..............))))************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V106 head	M044 female body	V105 male body	V055 head
...................................................................................TGTCAAAATGGGAGTGTCTGCC..................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GTGCAAAAGGTCGAGGAT.........................................	18	0	1	1.00	1	0	0	0	0	1	0
.......................................................................CAAGGCGGAGTTTGTCAAAATGGGA...........................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................ATCACCGAACGGCGACATGGAAGAGC........................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................TTCTATATGAACATCATCA......................	19	0	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................GGCGGCCAAGCTACGCATGAAGGCC..............................................................	25	0	1	1.00	1	1	0	0	0	0	0
..................GATGTCATCGGGAGCTGCGCCTTTGGC..............................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
..................GATGTCATCGGGAGCTGCGCCTTT.................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................GGCTCCCAAATTGGCGGC.................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................AACGGCGACATGGAAGAGC........................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
...........................................................................................TGGGAGTGTCTGCCATCACCGAACGGC.....................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0
.........................................................................................AATGGGAGTGTCTGCCAGCGCGGA..........................................................................................................................................	24	3	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................GAAGGCGACTGTGCAAAAGGT................................................	21	2	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................GGCCAAGCTACGCATGAAGGC...............................................................	21	0	1	1.00	1	1	0	0	0	0	0
.................................................................GGACCCCAAGGCGGAGTTTG......................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................AATGTGCAAAAGGTCGAG............................................	18	0	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................AGGTGCAAAAGGTCGAGGAT.........................................	20	1	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................GGACCTCTTCTTGTTTGG...................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GACACAGTGGATTATCGAGC	20	1	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................ATATGAACATCATCAAACA..................	19	2	4	0.25	1	0	1	0	0	0	0
.........................................................TGCCTGTAGGACCCCAAGAC..............................................................................................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0
..........................................................GTCTGAAGGAAGCCAAGG...............................................................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0
..................................................................................................................................................................................GAATGAAGGCGACTGTGCAA.....................................................	20	3	7	0.14	1	0	0	0	1	0	0
TTGGTTCGATTCACAGCCGAT......................................................................................................................................................................................................................................	21	3	9	0.11	1	1	0	0	0	0	0
....................................................................................GTCAAACTGGCAGCGTCTG....................................................................................................................................................	19	3	14	0.07	1	0	0	0	1	0	0
..GGCTCGATTAACCGCCG........................................................................................................................................................................................................................................	17	2	16	0.06	1	0	0	0	0	0	1
.............................................................................................................................AAGAGCCAGCGCCCTCTTC...........................................................................................................	19	3	19	0.05	1	0	0	1	0	0	0
.............................................................TTAAGGACACCCAGGCGGAG..........................................................................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................AGACACAGTGGATGGTCGA..	19	3	20	0.05	1	0	0	0	0	0	1

AACCGAGCGAAGTGGCGGCTACAGTAGCCCTCGACGCGGAAACCGGAACTAACGGTAACAGACTTCCTGGGGTTCCGCCTCAAACAGTTTTACCCTCACAGACGGTAGTGGCTTGCCGCTGTACCTTCTCGGTACCTGGAGAAGAACAAACCCCGAGGGTTTAACCGCCGGTTCGATGCGTACTTCCGGTTACACGTTTTCCAGCTCCTAAAGATATACTTGTAGTAGTTCCTGTGTCACCTAATAGCTCA ************************************************************.(((((..(((((((.((.(((..........)))((((.(((((((........))))))))))).)).)))))))..)))))((((..............))))*********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	V039 embryo	M044 female body	V055 head	M058 embryo
.............................................................................................................................TTCTCGGTCGCGGGAGAAGA..........................................................................................................	20	3	5	2.00	10	9	1	0	0	0
...................................GCGGAAACCAGAACAACCGGTAAC................................................................................................................................................................................................	24	3	1	1.00	1	0	1	0	0	0
............................................................................................CCCTCACAGACGGTAGTGGC...........................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
.............................................................................................................CGCTTTCCGCTGTACCTTC...........................................................................................................................	19	2	2	0.50	1	0	1	0	0	0
.............................................................................................................................TTCTCGGTCGCGGGAGAAGAA.........................................................................................................	21	3	2	0.50	1	1	0	0	0	0
.....................................................................GGTTTCCGCCTCAAACCGTGT.................................................................................................................................................................	21	3	3	0.33	1	0	0	1	0	0
....................................CGGAAGGCGGAACTAATGGTA..................................................................................................................................................................................................	21	3	6	0.17	1	0	0	0	1	0
.......CGAAGCGGCGGGTACAGTG.................................................................................................................................................................................................................................	19	3	20	0.10	2	2	0	0	0	0
......................................................................................................................................................................................CTTCGGGTTGCACGTTTTGC.................................................	20	3	12	0.08	1	0	1	0	0	0
....................................................CGGTAACGGACTTGCTGGC....................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	1
....................................................................................................................................................................................................................GATGTACTTGTAGTAGTATC...................	20	3	19	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:2545759-2546009 -	dan_1740	TTGGCTCGCTTCACCGCCGATGTCATCGGGAGCTGCGCCTTTGGCCTTGATTGCCATTGTCTGAAGGACCCCAAGGCGGAGTTTGTCAAAATGGGAGTGTCTGCCATCACCGAACGGCGACATGGAAGAGCCATGGACCTCTTCTTGTTTGGGGCT---CCCAAATTGGCGGCCAAGCTACGCATGAAGGCCAATGTGCAAAAGGTCGAGGATTTCTATATGAACATCATCAAGGACACAGTGGATTATCGAGT
droBip1	scf7180000396759:1605853-1606103 -		CTGGCTCGCTTCACCGCCGATGTCATCGGGAGCTGTGCCTTTGGCTTGGATTGCCATAGTCTGAAGGATCCCAAGGCTGAGTTTGTCAAAATGGGAGTATCTGCCATCACCGAACGCAGATATGGAAGAGCGTTGGACCTCTTCTTGTTCGGAGCT---CCAAAACTGGCGGAAAAGCTGCGCATGAAGGCCAGTGTCCAAAAGGTCGAGGATTTCTATATGAACATCATCAAGGACACAGTGGATTATCGAGT
droKik1	scf7180000302367:373209-373459 -		GTGGCACGCTTCACGGCCGACGTGATCGGTAGCTGTGCTTTCGGCCTGGATTGTCACAGCCTGACGGATCCCAAGGCGGAGTTCGTCAAGATGGGAACCGATGCCATCACCAAACGGCGTTGGGGTAAGTCCATGGATCTGTTTCTGTTCGGGGCT---CCCAAGCTGGCCGCCAAGCTGCGCATGAAAGGGTTGGTCCAGGAGGTCGAGGACTTCTACATGAATATCATCAAGGACACCATCGAGTATCGCAT
droFic1	scf7180000453809:472980-473230 +		TTGGCTCGATTCACAGCCGATGTAATAGGAACGTGTGCCTTTGGTTTGGAATGCCACAGTTTGTCGGATCCCAAGGCTGAGTTTGTTACAATGGGCACTTCTGCCATCACCGAGCGACGTTACGGAAAGTCCATGGATCTGATTCTCTTTGGAGCT---CCCAAATTGGCAGCCAAACTGCGCATGAAGCAGAGTCCCCAGAAAGTCGAGGACTTCTACATGAAGATCATCAAGGATACAGTGGACTTTCGCGT
droEle1	scf7180000491214:3612811-3613061 +		TTGGCCCGTTTCACTGCCGATGTAATCGGAACGTGTGCCTTCGGCTTGGATTGCCACAGTTTGTCGGATCCCAAAGCGGAGTTTGTCCAAATGGGAAAAGATGCTATTACCAAACGACGATATGGAAAATCGATGGACTTGCTTTTGTTTGGGGCC---CCGAAACTTGCGGAAAAATTGCGTATGAAACAGAGTGTCCAGAAAGTGGAGGACTTCTATATGAACATCATTAAGGATACTGTGAACTATCGCGT
droRho1	scf7180000777223:13055-13305 +		TTGGCCCGTTTCACAGCCGATGTGATCGGAACGTGTGCCTTCGGCTTGGATTGTCACAGTTTGTCGGACCCCAAGGCGGAGTTTGTCCAAATGGGAACTGCTGCTATCAACGAACGACGATATGGAAAGTCTTTGGATATGTTTTTGTTTGGGGCA---CCAAGGCTAGCGGCCAAACTTCGCATGAAACAGAGTGTCCAGAAGGTGGAAGACTTCTACATGAACATCATTAAGGATACTGTAAACTATCGCGT
droBia1	scf7180000302292:910208-910458 +		CTGGCCTGCTTCACCGCCGATGTCATCGGTTGCTGTGCCTTCGGTATAGATTGCAACTGTTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGAACTGCTGCCCTCACCGAAAGACGTTACGGAAAGACGTTGGATCTGTTTCTATTCGGAGCC---CCAAAACTAGCGGCCAAGTTGCGTATGAAAGAATATGTGCAAAGGGTCGAAGACTTTTACATGAATATCATTAGGAACACAGTGGATTACCGCGT
droTak1	scf7180000415260:144742-144992 -		CTGGCCCGTTTCACCGCCGATGTCATCGGAACTTGTGCCTTCGGTTTGGATTGTCACAGTTTATCCGATCCTAAGGCGGAATTTGTCCAAATGGGAACTGCCGCCATCACCGAACGACGTTATGGAAAATCGATGGATTTGTTTCTCTTCGGGGCC---CCAAAATTGGCGGCCAAGTTGCGTATGAAGGGAAACGTCCAAAAGGTCGAGGACTTTTACATGAACATCATTAAGAGCACTGTGAATTTTCGCGT
droEug1	scf7180000409462:382294-382544 -		CTAGCCCGTTTCACCGCTGATGTCATTGGAACTTGTGCCTTTGGCTTGGATTGCCACAGCTTGTCGGATCCCAAGGCGGAGTTTGTGAAAATGGGAACTGCTGCCATCACCGAACGACGTTATGGAAAATCGCTGGACGTCTTCTTGTTTGGAGCA---CCAAAACTAGCGGCAAAACTGCGTATGAAACAGAGTGTCCAGAAGGTCGAGGACTTTTACATGAACATTATTAAGGATACTGTGGACTATCGTAT
dm3	chr2R:10770167-10770417 +		GTTGCCCGTTTCACCGCCGATGTCATCGGAAGTTGCGCCTTCGGCTTGGATTGTCATAGTTTGTCGGATCCCAAGGCGAAGTTTGTCCAAATGGGAACGACCGCAATCACAGAGCGGCGCCATGGCAAGTCCATGGATCTACTTCTGTTCGGAGCC---CCCGAACTGGCCGCTAAGCTGCGCATGAAGGCGACTGTCCAAGAGGTCGAGGACTTTTACATGAACATCATCCGGGACACTGTTGATTATCGCGT
droSim2	2r:11471940-11472190 +		GTGGCCCGTTTCACCGCCGATGTCATCGGGACTTGCGCCTTCGGCTTGGATTGCCATAGCTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGTACGGCCGCCATTACCGAGCGGCGCTATGGCAAGTCCATGGATTTACTTCTGTTCGGAGCC---CCCAAGCTGGCCGCCAAGTTGCGCATGAAGGCGACTGTCCAGAAGGTCGAGGACTTTTACATGAACATCATCCGGGACACTGTTGATTATCGCGT
droSec2	scaffold_1:8292967-8293217 +		GTGGCCCGTTTCACCGCCGATGTCATCGGGAGTTGCGCCTTCGGCTTGGATTGCCATAGCTTGTCGGATCCCAAGACGGAGTTTGTCCAAATGGGAACAGCCGCCATCACCGAGCGGCGCTATGGCAAGTCCATGGATCTACTTCTGTTCGGAGCC---CCCAAGCTGGCCGCCAAGCTGCGCATGAAGGCGACTGTCCAGAAGGTCGAGGACTTTTACATGAACATCATCCGGGACACTGTTGATTATCGCGT
droYak3	2R:10708059-10708309 +		CTGGCCCGTTTCACCGCCGATGTCATCGGAAGCTGCGCCTTTGGCTTGGATTGCCACAGTTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGAACTGCTGCGATTACCGAGCGGCGCTATGGCAAGTCCATGGATCTACTACTGTTCGGAGCC---CCCCAGCTGGCGGCCAAGCTGCGAATGAAGGCGACTGTGCAAAAGGTCGAGGACTTCTACATGAACATCATCCGGGACACTGTTGATTATCGCAT
droEre2	scaffold_4845:15073577-15073827 -		CTGGCCCGTTTCACCGCCGATGTCATCGGGAGCTGCGCCTTTGGCTTGGACTGCCACAGTTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGCACTGCCGCGATCACCGAGCGGCGCTATGGCAAGTCCATGGATCTACTGCTGTTCGGAGCC---CCCAAACTGGCCGCCAAGCTGCGAATGAAGGCGACTGTGCAAAAGGTCGAGGACTTTTACATGAACATCATTCAGGACACTGTTGACTATCGCGT
dp5	3:13269828-13270078 +		GTGTCCCGCTTCAGCGCAGATGTGATAGGAAGCTGTGCCTTCGGCCTGGAGTGCAACAGTTTGCGGAACCCCAATGCAGAATTTGTCACCATGGGCAAGGCTGCCATCACTGAGCGGCGCTATGGAAAAACAGCGGACTTGTTCTTTTTCGGTGCA---CCTAAGCTGGCAGCCAAGTTGCGAATGAAGGAAACCGTCCAGAAAGTCGAGGATTTCTATATGAAAATCGTTAGAGAAACCGTCGACTATCGGTT
droPer2	scaffold_2:8352298-8352548 -		GTGTCCCGCTTCAGCGCAGATGTGATAGGAAGCTGTGCCTTCGGCCTGGAGTGCAACAGTTTGCGGAACCCCAATGCAGAATTTGTCACCATGGGCAAGGCTGCCATCACTGAGCGGCGCTATGGAAAAACAGCGGACTTGTTCTTTTTCGGTGCA---CCTAAGCTGGCAGCCAAGTTGCGAATGAAGGAAACCGTTCAGAAAGTCGAGGATTTCTATATGAAAATCGTTAGAGAAACCGTCGACTATCGGCT
droWil2	scf2_1100000004513:2992179-2992429 -		GTGGCTCGTTTTACGGCGGACGTGATAGGCAGTTGTGCATTTGGTCTGGAGTGCAACAGTCTGCATAATCCTGAGGCAGAATTCGTCAAAATGGGAAATGCAGCCATCAATGAAAGAAGGCACGGTAGAGCTCTGGATCTGTTTCTATTCGGTGCC---CCCAAATTGGCTGCAAAATTGCGCATGAAACAATTGGTCCAAAAGGTCGAGGATTTCTACATGAACATAATTAGGGATACGGTGAATTATCGTGT
droVir3	scaffold_12875:10349789-10350039 -		CTGGCACGCTTCACCGTCGACATTATCGGCAGCTGCGCCTTCGGCCTGGACTGCAACAGCCTGAACGATCCGAACGTGGAGTTTCGCCGCCTGGGCCAGAAGACCTTCACGGAGCGGCGACATGGCCGGC---TGGCCTTCGCCCTCATTCAGGCCTTTCCCCGCCTGGCCAAGCGGCTGCACATCAAAATGGTGCAGGACGATGTCAGCGCCTTCTACATGCGCGTCGTCCGCGAGACTCTGGACTATCGCGA
droMoj3	scaffold_6496:17479686-17479936 -		GTGGGACGCTTCACGGCCGATGTAATTGGCAACTGCGCCTTTGGGCTCGACTGCGACAGCCTGCGTGATCCAAACGCGCATTTCGTCCGCGTGGGTAAACGGGCTTTAACGGAGCGACGGTATCATGGCTTGTTTGATTTCTTCATATTTGGCTTC---CCAAAGCTGGCACGTCGCATGCATCTGAAACTAACAGTAGAAGAGGTTGAGGAGTTCTATATGCGCATCATTCGCGATACCATCGACTATCGCCT
droGri2	scaffold_15245:2827657-2827907 +		ATGGGTCGCTATACGGCCGATGTGATTGGCACCTGTGCGTTTGGCATCGATTGCAACAGCCAGCGCAATCCCGATGCCGATTTTGTCAGCATGGGCAAGCGAGCTGTTACGGAACGAGCCTATCATGGACTTTTAGATTTCTTCATTTTTGGCTTT---CCCAAGTTAGCGCGTTTTTTGCATTTGCGATTAACAGTTCCGGAGGTTGAGGACTTCTACATGCGGATCATCAAAGACACCATCGATTATCGTGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TTGGCTCGCTTCACCGCCGATGTCATCGGGAGCTGCGCCTTTGGCCTTGATTGCCATTGTCTGAAGGACCCCAAGGCGGAGTTTGTCAAAATGGGAGTGTCTGCCATCACCGAACGGCGACATGGAAGAGCCATGGACCTCTTCTTGTTTGGGGCT---CCCAAATTGGCGGCCAAGCTACGCATGAAGGCCAATGTGCAAAAGGTCGAGGATTTCTATATGAACATCATCAAGGACACAGTGGATTATCGAGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................TGTCAAAATGGGAGTGTCTGCC.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................GTGCAAAAGGTCGAGGAT.........................................	18	1	1.00	1	0	0	0	0	1	0
.......................................................................CAAGGCGGAGTTTGTCAAAATGGGA..............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................ATCACCGAACGGCGACATGGAAGAGC...........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................TTCTATATGAACATCATCA......................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................GGCGGCCAAGCTACGCATGAAGGCC..............................................................	25	1	1.00	1	0	1	0	0	0	0
..................GATGTCATCGGGAGCTGCGCCTTTGGC.................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................GATGTCATCGGGAGCTGCGCCTTT....................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................GGCT---CCCAAATTGGCGGC.................................................................................	18	1	1.00	1	0	1	0	0	0	0
................................................................................................................AACGGCGACATGGAAGAGC...........................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...........................................................................................TGGGAGTGTCTGCCATCACCGAACGGC........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................GGCCAAGCTACGCATGAAGGC...............................................................	21	1	1.00	1	0	1	0	0	0	0
.................................................................GGACCCCAAGGCGGAGTTTG.........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................AATGTGCAAAAGGTCGAG............................................	18	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................GGACCTCTTCTTGTTTGG......................................................................................................	18	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................GACACAGTGGATTATCGAGC	20	1	1.00	1	0	1	0	0	0	0

droBip1

CTGGCTCGCTTCACCGCCGATGTCATCGGGAGCTGTGCCTTTGGCTTGGATTGCCATAGTCTGAAGGATCCCAAGGCTGAGTTTGTCAAAATGGGAGTATCTGCCATCACCGAACGCAGATATGGAAGAGCGTTGGACCTCTTCTTGTTCGGAGCT---CCAAAACTGGCGGAAAAGCTGCGCATGAAGGCCAGTGTCCAAAAGGTCGAGGATTTCTATATGAACATCATCAAGGACACAGTGGATTATCGAGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTGGCACGCTTCACGGCCGACGTGATCGGTAGCTGTGCTTTCGGCCTGGATTGTCACAGCCTGACGGATCCCAAGGCGGAGTTCGTCAAGATGGGAACCGATGCCATCACCAAACGGCGTTGGGGTAAGTCCATGGATCTGTTTCTGTTCGGGGCT---CCCAAGCTGGCCGCCAAGCTGCGCATGAAAGGGTTGGTCCAGGAGGTCGAGGACTTCTACATGAATATCATCAAGGACACCATCGAGTATCGCAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTGGCTCGATTCACAGCCGATGTAATAGGAACGTGTGCCTTTGGTTTGGAATGCCACAGTTTGTCGGATCCCAAGGCTGAGTTTGTTACAATGGGCACTTCTGCCATCACCGAGCGACGTTACGGAAAGTCCATGGATCTGATTCTCTTTGGAGCT---CCCAAATTGGCAGCCAAACTGCGCATGAAGCAGAGTCCCCAGAAAGTCGAGGACTTCTACATGAAGATCATCAAGGATACAGTGGACTTTCGCGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTGGCCCGTTTCACTGCCGATGTAATCGGAACGTGTGCCTTCGGCTTGGATTGCCACAGTTTGTCGGATCCCAAAGCGGAGTTTGTCCAAATGGGAAAAGATGCTATTACCAAACGACGATATGGAAAATCGATGGACTTGCTTTTGTTTGGGGCC---CCGAAACTTGCGGAAAAATTGCGTATGAAACAGAGTGTCCAGAAAGTGGAGGACTTCTATATGAACATCATTAAGGATACTGTGAACTATCGCGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGGCCCGTTTCACAGCCGATGTGATCGGAACGTGTGCCTTCGGCTTGGATTGTCACAGTTTGTCGGACCCCAAGGCGGAGTTTGTCCAAATGGGAACTGCTGCTATCAACGAACGACGATATGGAAAGTCTTTGGATATGTTTTTGTTTGGGGCA---CCAAGGCTAGCGGCCAAACTTCGCATGAAACAGAGTGTCCAGAAGGTGGAAGACTTCTACATGAACATCATTAAGGATACTGTAAACTATCGCGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGGCCTGCTTCACCGCCGATGTCATCGGTTGCTGTGCCTTCGGTATAGATTGCAACTGTTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGAACTGCTGCCCTCACCGAAAGACGTTACGGAAAGACGTTGGATCTGTTTCTATTCGGAGCC---CCAAAACTAGCGGCCAAGTTGCGTATGAAAGAATATGTGCAAAGGGTCGAAGACTTTTACATGAATATCATTAGGAACACAGTGGATTACCGCGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGGCCCGTTTCACCGCCGATGTCATCGGAACTTGTGCCTTCGGTTTGGATTGTCACAGTTTATCCGATCCTAAGGCGGAATTTGTCCAAATGGGAACTGCCGCCATCACCGAACGACGTTATGGAAAATCGATGGATTTGTTTCTCTTCGGGGCC---CCAAAATTGGCGGCCAAGTTGCGTATGAAGGGAAACGTCCAAAAGGTCGAGGACTTTTACATGAACATCATTAAGAGCACTGTGAATTTTCGCGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTAGCCCGTTTCACCGCTGATGTCATTGGAACTTGTGCCTTTGGCTTGGATTGCCACAGCTTGTCGGATCCCAAGGCGGAGTTTGTGAAAATGGGAACTGCTGCCATCACCGAACGACGTTATGGAAAATCGCTGGACGTCTTCTTGTTTGGAGCA---CCAAAACTAGCGGCAAAACTGCGTATGAAACAGAGTGTCCAGAAGGTCGAGGACTTTTACATGAACATTATTAAGGATACTGTGGACTATCGTAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTTGCCCGTTTCACCGCCGATGTCATCGGAAGTTGCGCCTTCGGCTTGGATTGTCATAGTTTGTCGGATCCCAAGGCGAAGTTTGTCCAAATGGGAACGACCGCAATCACAGAGCGGCGCCATGGCAAGTCCATGGATCTACTTCTGTTCGGAGCC---CCCGAACTGGCCGCTAAGCTGCGCATGAAGGCGACTGTCCAAGAGGTCGAGGACTTTTACATGAACATCATCCGGGACACTGTTGATTATCGCGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................TAAGCTGCGCATGAAGGCGACTG..........................................................	23	1	33.00	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	2	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TGGGAACGACCGCAATCACAGAGCG..........................................................................................................................................	25	1	30.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	1	5	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGGGAACGACCGCAATCACAGAGC...........................................................................................................................................	24	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCTAAGCTGCGCATGAAGGCGACTG..........................................................	25	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	9	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TGAAGGCGACTGTCCAAGAGGTCG..............................................	24	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TCATCCGGGACACTGTTGATTATCGC..	26	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CAAGAGGTCGAGGACTTTTACATGAA..............................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGGGAACGACCGCAATCACAGAGCGGC........................................................................................................................................	27	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................GACTGTCCAAGAGGTCGAGGAC.........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................GCGAAGTTTGTCCAAATGGGA..............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CTGCGCATGAAGGCGACTGTCCAA.....................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGGGAACGACCGCAATCACAGAGT...........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CGCAATCACAGAGCGGCGCCAT...................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GACTGTCCAAGAGGTCGAGGACT........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGAACATCATCCGGGACACTGTT...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CCATGGATCTACTTCTGTTCGGAG....................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droSim2

GTGGCCCGTTTCACCGCCGATGTCATCGGGACTTGCGCCTTCGGCTTGGATTGCCATAGCTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGTACGGCCGCCATTACCGAGCGGCGCTATGGCAAGTCCATGGATTTACTTCTGTTCGGAGCC---CCCAAGCTGGCCGCCAAGTTGCGCATGAAGGCGACTGTCCAGAAGGTCGAGGACTTTTACATGAACATCATCCGGGACACTGTTGATTATCGCGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................CGAGGACTTTTACATGAACATCATCC......................	26	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ACCGAGCGGCGCTATGGCAAGTCCAAA.......................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................ATGTCATCGGGACTTGCGCCT......................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ATCATCCGGGACACTGTTGATTATC....	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATGGATTTACTTCTGTTCGGAGCC---...............................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GACACTGTTGATTATCGC..	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGTCCAGAAGGTCGAGGA..........................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CCATGGATTTACTTCTGTTC........................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GACACTGTTGATTATCGCGT	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGTCATCGGGACTTGCGCC.......................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTTTACATGAACATCATCCGGGA..................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................GCTTGTCGGATCCCAAGGCGGA..............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GGACACTGTTGATTATCGCGT	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGAGGACTTTTACATGAACAT...........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CCGGGACACTGTTGATTATC....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AAGGCGACTGTCCAGAAGGTCGA.............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCGAGGACTTTTACATGAACATC..........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................AGCTTGTCGGATCCCAAGGCGG...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGCGCATGAAGGCGACTG..........................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TAGCTTGTCGGATCCCAAGGCG................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................ATAGCTTGTCGGATCCCAAG...................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGCGCCTTCGGCTTGGATTGC........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ACATGAACATCATCCGGGACAC...............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GGCCCGTTTCACCGCCGA..........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTCGAGGACTTTTACATGAAC.............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCGAGGACTTTTACATGAAC.............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTGGCCCGTTTCACCGCCGATGTCATCGGGAGTTGCGCCTTCGGCTTGGATTGCCATAGCTTGTCGGATCCCAAGACGGAGTTTGTCCAAATGGGAACAGCCGCCATCACCGAGCGGCGCTATGGCAAGTCCATGGATCTACTTCTGTTCGGAGCC---CCCAAGCTGGCCGCCAAGCTGCGCATGAAGGCGACTGTCCAGAAGGTCGAGGACTTTTACATGAACATCATCCGGGACACTGTTGATTATCGCGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CTGGCCCGTTTCACCGCCGATGTCATCGGAAGCTGCGCCTTTGGCTTGGATTGCCACAGTTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGAACTGCTGCGATTACCGAGCGGCGCTATGGCAAGTCCATGGATCTACTACTGTTCGGAGCC---CCCCAGCTGGCGGCCAAGCTGCGAATGAAGGCGACTGTGCAAAAGGTCGAGGACTTCTACATGAACATCATCCGGGACACTGTTGATTATCGCAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................TTTGTCCAAATGGGAACTGC.........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................TGTCCAAATGGGAACTGCTGC......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............GCCGATGTCATCGGAAGCTGC..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GATGTCATCGGAAGCTGCGCCTTT....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................CATCCGGGACACTGTTGAT........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................CGATGTCATCGGAAGCTGCGCC.......................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................TTGTCCAAATGGGAACTGCTGCG.....................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................GAACATCATCCGGGACACTGTT...........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ATGAAGGCGACTGTGCAAAAGGT................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................CAAGCTGCGAATGAAGGC...............................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CTACTGTTCGGAGCC---CCCCAGCTGGC....................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................GGACTTCTACATGAACATC..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................GATGTCATCGGAAGCTGCGCCT......................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CATCATCCGGGACACTGTTGATTATC....	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATGAAGGCGACTGTGCAAAAGGTCGA.............................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................GTTTGTCGGATCCCAAGGCGGA..............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................GACTGTGCAAAAGGTCGAGGACTT.......................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........TCACCGCCGATGTCATCGGAAGCTGC..........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ATGAAGGCGACTGTGCAAAAG..................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................CATGAACATCATCCGGGACACTGTTGAT........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GGCGCTATGGCAAGTCCATGGAT....................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................ACTACTGTTCGGAGCC---CCCCAGCTG......................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................TGTGCAAAAGGTCGAGGACT........................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

CTGGCCCGTTTCACCGCCGATGTCATCGGGAGCTGCGCCTTTGGCTTGGACTGCCACAGTTTGTCGGATCCCAAGGCGGAGTTTGTCCAAATGGGCACTGCCGCGATCACCGAGCGGCGCTATGGCAAGTCCATGGATCTACTGCTGTTCGGAGCC---CCCAAACTGGCCGCCAAGCTGCGAATGAAGGCGACTGTGCAAAAGGTCGAGGACTTTTACATGAACATCATTCAGGACACTGTTGACTATCGCGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................TACTGCTGTTCGGAGCC---CCCAAACTG......................................................................................	26	1	19.00	19	0	0	0	0	0	0	19
...................................................................................................................................................................................................................................CATTCAGGACACTGTTGACTATCGC..	25	1	6.00	6	1	1	0	2	2	0	0
.....................................................................................................................................................................................GAATGAAGGCGACTGTGCAAAA...................................................	22	1	5.00	5	0	0	0	0	3	2	0
..............................................................................................GCACTGCCGCGATCACCGAGC...........................................................................................................................................	21	1	5.00	5	0	0	0	0	4	1	0
................................................................................................ACTGCCGCGATCACCGAGC...........................................................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0
...............................................................................................................................................................................................GACTGTGCAAAAGGTCGAGGACT........................................	23	1	3.00	3	1	0	0	0	2	0	0
..........................................................GTTTGTCGGATCCCAAGGC.................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	2	1	0
.......................................................................................................................................................................................ATGAAGGCGACTGTGCAAAAGGT................................................	23	1	3.00	3	0	0	0	0	3	0	0
.......................................................................................CAAATGGGCACTGCCGCGAT...................................................................................................................................................	20	1	3.00	3	1	0	0	0	0	2	0
..........................................................................................................................................................................CGCCAAGCTGCGAATGAAGGC...............................................................	21	1	3.00	3	0	2	0	0	1	0	0
.......................................................................................................................................................................................ATGAAGGCGACTGTGCAAAAG..................................................	21	1	2.00	2	1	0	0	0	1	0	0
.........................................................AGTTTGTCGGATCCCAAGGC.................................................................................................................................................................................	20	1	2.00	2	0	0	0	1	1	0	0
..........................................................................................................................................................................................................................................GACACTGTTGACTATCGCGT	20	1	2.00	2	0	0	0	0	1	1	0
.......................................................................................................................................................................................................................TTACATGAACATCATTCAGGACACT..............	25	1	2.00	2	0	1	0	0	1	0	0
..................GATGTCATCGGGAGCTGCGCCTTTGGCTT...............................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	2	0	0
..............................................................................................................................................................................................................CGAGGACTTTTACATGAAC.............................	19	1	2.00	2	1	0	0	0	0	1	0
.......................................................................................................................................................................................ATGAAGGCGACTGTGCAAAA...................................................	20	1	2.00	2	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................GAACATCATTCAGGACACT..............	19	1	2.00	2	1	1	0	0	0	0	0
.............................GAGCTGCGCCTTTGGCTTGGA............................................................................................................................................................................................................	21	1	2.00	2	0	0	0	1	0	1	0
...................................................................................................................................................................................................GTGCAAAAGGTCGAGGACTTTT.....................................	22	1	2.00	2	1	0	0	0	1	0	0
..................GATGTCATCGGGAGCTGCGCCTTTGG..................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0
......................................................CACAGTTTGTCGGATCCCAAGGC.................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
..................................................................GATCCCAAGGCGGAGTTTGTCC......................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
.......................................................................................CAAATGGGCACTGCCGCGATCACCGAGC...........................................................................................................................................	28	1	2.00	2	1	0	0	1	0	0	0
........................ATCGGGAGCTGCGCCTTTGGC.................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................CTGGCCGCCAAGCTGCGAATGAAGGC...............................................................	26	1	2.00	2	0	0	0	0	0	2	0
......................................................CACAGTTTGTCGGATCCCAAGGCGGA..............................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0
...................................................................................................................................CATGGATCTACTGCTGTTCGGAGC...................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..........................................GGCTTGGACTGCCACAGTTTGTCGG...........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................TTACATGAACATCATTCAGGA..................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................GCGAATGAAGGCGACTGTGCAAAAGGT................................................	27	1	1.00	1	0	0	0	0	1	0	0
..............................................TGGACTGCCACAGTTTGTCG............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.........TTCACCGCCGATGTCATCGGGAGCTGC..........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.......................................................ACAGTTTGTCGGATCCCAAGGC.................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
............................................................TTGTCGGATCCCAAGGCGGAGTTTGTC.......................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................CTGCCACAGTTTGTCGGATCCCAAGG..................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................GGATCTACTGCTGTTCGGAGCC---CCCAAA.........................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................AGTTTGTCGGATCCCAAGGCGGA..............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................TGAACATCATTCAGGACACTGTT...........	23	1	1.00	1	0	1	0	0	0	0	0
..................GATGTCATCGGGAGCTGCGCCTTT....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................GAATGAAGGCGACTGTGCAAAAGGT................................................	25	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................TTCGGAGCC---CCCAAACTGGC....................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................CAAGCTGCGAATGAAGGCGACT...........................................................	22	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................TGCTGTTCGGAGCC---CCCAAACT.......................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................GTCCATGGATCTACTGCTGTT.........................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................CGAATGAAGGCGACTGTGCAAAAG..................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................CAAGCTGCGAATGAAGGC...............................................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................TTGTCGGATCCCAAGGCGGA..............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................GGATCTACTGCTGTTCGG......................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................CACCGAGCGGCGCTATGGCAAGTCC..........................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................GACTGTGCAAAAGGTCGAGGACTT.......................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................GAATGAAGGCGACTGTGCAAAAGGC................................................	25	1	1.00	1	0	0	0	0	1	0	0
...............................GCTGCGCCTTTGGCTTGGACTGCCAC.....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................CCAAGCTGCGAATGAAGGC...............................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................AGTCCATGGATCTACTGCTGTTCGG......................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................CGGAGCC---CCCAAACTGGC....................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................GATCTACTGCTGTTCGGAGCC---CC.............................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................TCGAGGACTTTTACATGAAC.............................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................GATCACCGAGCGGCGCTAT...................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................CTGTGCAAAAGGTCGAGGACT........................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................GGCACTGCCGCGATCACCGAGC...........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................ATCATTCAGGACACTGTT...........	18	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................CCATGGATCTACTGCTGTTCGGAGC...................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................TGCGAATGAAGGCGACTGTG........................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....................GTCATCGGGAGCTGCGCCTTTGGCTT...............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................TGTGCAAAAGGTCGAGGACTTT......................................	22	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................CGAGGACTTTTACATGAA..............................	18	1	1.00	1	1	0	0	0	0	0	0
............ACCGCCGATGTCATCGGGAGCTG...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................GCTGCGAATGAAGGCGACTGTGCAAAA...................................................	27	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................CC---CCCAAACTGGCCGCCAAGCTGCGAAT.....................................................................	28	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................CGAATGAAGGCGACTGTGCAAA....................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................ACTGCTGTTCGGAGCC---CCC............................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...............................GCTGCGCCTTTGGCTTGGACTGC........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................TCAGGACACTGTTGACTATCGC..	22	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................GAACATCATTCAGGACACTGTT...........	22	1	1.00	1	0	0	0	1	0	0	0
.......................CATCGGGAGCTGCGCCTTTGGCTTGGAC...........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................ACTGGCCGCCAAGCTGCGAATGAAGG................................................................	26	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................GGCACTGCCGCGATCACCGAGCGGCG.......................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................GAATGAAGGCGACTGTGCAAA....................................................	21	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................ATTCAGGACACTGTTGACTATCGC..	24	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................TCAGGACACTGTTGACTATCGCGT	24	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................GAATGAAGGCGACTGTGCAAAAGGTC...............................................	26	1	1.00	1	0	0	0	0	1	0	0
.......................................TTTGGCTTGGACTGCCACAGTT.................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................CGCCAAGCTGCGAATGAAGGG...............................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................CCCAAGGCGGAGTTTGTCCAA....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................GATCCCAAGGCGGAGTTTGT........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................GCTTGGACTGCCACAGTTTGTCGGAT.........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................ATGGATCTACTGCTGTTCGGA.....................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................CTGCCACAGTTTGTCGGATCCCAAG...................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................GACTGTGCAAAAGGTCGAGGACTTTTAC...................................	28	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................GCTGCGAATGAAGGCGACTGT.........................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................GTCGGATCCCAAGGCGGAGTTTGTC.......................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................TCCCAAGGCGGAGTTTGTCCA.....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................GATCTACTGCTGTTCGGAGCC---CCA............................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GGACACTGTTGACTATCGCG.	20	1	1.00	1	0	0	0	1	0	0	0
...................................................................ATCCCAAGGCGGAGTTTGTCCAAATGG................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..........................................GGCTTGGACTGCCACAGTTTGTCGGATC........................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................GCTGCGAATGAAGGCGACTGTG........................................................	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................CATCATTCAGGACACTGTT...........	19	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................AGTCCATGGATCTACTGCT............................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
......................TCATCGGGAGCTGCGCCTTTGGC.................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................AGTTTGTCGGATCCCAAGGCGGAGTTT..........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................GTCCATGGATCTACTGCT............................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................GAGGACTTTTACATGAACATC..........................	21	1	1.00	1	1	0	0	0	0	0	0
..................GATGTCATCGGGAGCTGCGCCT......................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GAGGACTTTTACATGAACATCATTCAGG...................	28	1	1.00	1	1	0	0	0	0	0	0
...................ATGTCATCGGGAGCTGCGCCTTTGGCTT...............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................ACATGAACATCATTCAGGACACT..............	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................CATGGATCTACTGCTGTTC........................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................AGCTGCGAATGAAGGCGAC............................................................	19	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................CTGCGAATGAAGGCGACTGTGCAAAA...................................................	26	1	1.00	1	0	0	0	0	1	0	0
...............................GCTGCGCCTTTGGCTTGGA............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................TCCCAAGGCGGAGTTTGTCCAAATGG................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................ATCTACTGCTGTTCGGAGCC---CCCA...........................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................TCCATGGATCTACTGCTG...........................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................GCCGCCAAGCTGCGAATGAAGGC...............................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................CATGGATCTACTGCTGTTCGGA.....................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................AATGAAGGCGACTGTGCAAAAGGT................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................ATGGGCACTGCCGCGATCACCGAGC...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.............................................TTGGACTGCCACAGTTTGT..............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
......................................................CACAGTTTGTCGGATCCCAAGGCG................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......................................TTTGGCTTGGACTGCCACAG...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................AGGCGACTGTGCAAAAGGTCGAGGACT........................................	27	1	1.00	1	0	0	0	0	1	0	0
..................GATGTCATCGGGAGCTGC..........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................CTGCGAATGAAGGCGACTGTGCA......................................................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................CACAGTTTGTCGGATCCCA.....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................CACTGCCGCGATCACCGAGC...........................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........CACCGCCGATGTCATCGGGAGCTGCGC........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
............................................................................................GGGCACTGCCGCGATCACCGAGC...........................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

dp5

GTGTCCCGCTTCAGCGCAGATGTGATAGGAAGCTGTGCCTTCGGCCTGGAGTGCAACAGTTTGCGGAACCCCAATGCAGAATTTGTCACCATGGGCAAGGCTGCCATCACTGAGCGGCGCTATGGAAAAACAGCGGACTTGTTCTTTTTCGGTGCA---CCTAAGCTGGCAGCCAAGTTGCGAATGAAGGAAACCGTCCAGAAAGTCGAGGATTTCTATATGAAAATCGTTAGAGAAACCGTCGACTATCGGTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................AGAGAAACCGTCGACTATCGGT.	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............GCAGATGTGATAGGAAGCTGTGC........................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................GGAAAAACAGCGGACTTGT................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GTTAGAGAAACCGTCGACTATCG...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CACTGAGCGGCGCTATGGA................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TCACTGAGCGGCGCTATGG.................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGTTAGAGAAACCGTCGACTATCG...	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................ATGCAGAATTTGTCACCATGGGC..............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................GCCATCACTGAGCGGCGCTATGGA................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TATGGAAAAACAGCGGACTTGTTC..............................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................AAGTTGCGAATGAAGGAAACCGTC........................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................AACAGTTTGCGGAACCCCAATGCAGA..............................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................TTTGCGGAACCCCAATGCA................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TATATGAAAATCGTTAGAGA..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AGCCAAGTTGCGAATGAAGGAAACC...........................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................CGGACTTGTTCTTTTTCGGTGCA---CCTA...........................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................TAGAGAAACCGTCGACTATCGGT.	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CTTTTTCGGTGCA---CCTAAGC........................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................AGTTTGCGGAACCCCAAT...................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................GGGCAAGGCTGCCATCACTGAGC...........................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CGTCCAGAAAGTCGAGGAT.........................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................AGGCTGCCATCACTGAGC...........................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CCCGCTTCAGCGCAGATGT.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................GAGCGGCGCTATGGAAAAACAGC........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGAAAATCGTTAGAGAAACCGTCGACT.......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................CTTTTTCGGTGCA---CCTAAGCTGGCA...................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GAATGAAGGAAACCGTCCAGA....................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GAAAGTCGAGGATTTCTATAT.................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................GATAGGAAGCTGTGCCTTC....................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GCTGTGCCTTCGGCCTGGA............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TTTCGGTGCA---CCTAAGCTGGCA...................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................ACAGTTTGCGGAACCCCAATGCA................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................TTCGGTGCA---CCTAAGCTGGCAGC.................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................AAACAGCGGACTTGTTCT.............................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GTGTCCCGCTTCAGCGCAGATGTGATAGGAAGCTGTGCCTTCGGCCTGGAGTGCAACAGTTTGCGGAACCCCAATGCAGAATTTGTCACCATGGGCAAGGCTGCCATCACTGAGCGGCGCTATGGAAAAACAGCGGACTTGTTCTTTTTCGGTGCA---CCTAAGCTGGCAGCCAAGTTGCGAATGAAGGAAACCGTTCAGAAAGTCGAGGATTTCTATATGAAAATCGTTAGAGAAACCGTCGACTATCGGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................CTATATGAAAATCGTTAGAGA..................	21	1	5.00	5	5	0	0	0	0	0
............................................................................................................................................................................................GGAAACCGTTCAGAAAGTCGAG............................................	22	1	5.00	5	5	0	0	0	0	0
...........................................................................................................................GGAAAAACAGCGGACTTGTTCTT............................................................................................................	23	1	4.00	4	4	0	0	0	0	0
................................................................................................AAGGCTGCCATCACTGAGC...........................................................................................................................................	19	1	4.00	4	3	1	0	0	0	0
..............................................................................................................................AAAACAGCGGACTTGTTCTTT...........................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................ATGAAGGAAACCGTTCAGAAAGTCGAG............................................	27	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................................................................................GTTCAGAAAGTCGAGGAT.........................................	18	1	3.00	3	3	0	0	0	0	0
......................................CTTCGGCCTGGAGTGCAAC.....................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
............................................................................................................................GAAAAACAGCGGACTTGTT...............................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................ATATGAAAATCGTTAGAGAAACC..............	23	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................TTCTATATGAAAATCGTTAGAGA..................	23	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................AAACAGCGGACTTGTTCT.............................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................AAACAGCGGACTTGTTCTT............................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................GATAGGAAGCTGTGCCTTCGGCCTGGA............................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................GTTGCGAATGAAGGAAACC...........................................................	19	1	2.00	2	2	0	0	0	0	0
................................................................................................................................AACAGCGGACTTGTTCTTTTTCGGTGC...................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................CGTTCAGAAAGTCGAGGAT.........................................	19	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................AAGGAAACCGTTCAGAAAGTCGAGGAT.........................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................GTTAGAGAAACCGTCGACTAT.....	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................ATGAAAATCGTTAGAGAAACCGTCGA.........	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................AGAGAAACCGTCGACTATC....	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................TGAAGGAAACCGTTCAGAAAGTCGAG............................................	26	1	1.00	1	0	0	0	0	0	1
...........................................................................................TGGGCAAGGCTGCCATCACTGAGCGG.........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................TTTTTCGGTGCA---CCTAAGCT.......................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....................GTGATAGGAAGCTGTGCCTT.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................ATATGAAAATCGTTAGAGA..................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................CTTTTTCGGTGCA---CCTAAGCTGGCAGC.................................................................................	27	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................GAAACCGTTCAGAAAGTCGAG............................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GTTAGAGAAACCGTCGACT.......	19	1	1.00	1	1	0	0	0	0	0
............................GAAGCTGTGCCTTCGGCCTGGAGTGCA.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
........................ATAGGAAGCTGTGCCTTCGGCCTGGAGT..........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................AGCCAAGTTGCGAATGAAGGAAA.............................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................CATCACTGAGCGGCGCTATGGAAAAAC...........................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
................................................................................................................................AACAGCGGACTTGTTCTTT...........................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................ATGGAAAAACAGCGGACT...................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................GAGAAACCGTCGACTATCGGCT	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................CTATATGAAAATCGTTAGAGAAACCGT............	27	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................TGAAGGAAACCGTTCAGAAAGTC...............................................	23	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................AGCGGACTTGTTCTTTTTCGGC.....................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................ACTGAGCGGCGCTATGGA................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................ACAGCGGACTTGTTCTTTTTCGGTG....................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................AATCGTTAGAGAAACCGTC...........	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................GAAGGAAACCGTTCAGAA...................................................	18	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................CAAGTTGCGAATGAAGGAA..............................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................TGAAGGAAACCGTTCAGAAAGT................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................GAATGAAGGAAACCGTTCAGA....................................................	21	1	1.00	1	0	1	0	0	0	0
...........CAGCGCAGATGTGATAGGA................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............GCGCAGATGTGATAGGAAGCTGTGC........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................GTCACCATGGGCAAGGCTGC......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

GTGGCTCGTTTTACGGCGGACGTGATAGGCAGTTGTGCATTTGGTCTGGAGTGCAACAGTCTGCATAATCCTGAGGCAGAATTCGTCAAAATGGGAAATGCAGCCATCAATGAAAGAAGGCACGGTAGAGCTCTGGATCTGTTTCTATTCGGTGCC---CCCAAATTGGCTGCAAAATTGCGCATGAAACAATTGGTCCAAAAGGTCGAGGATTTCTACATGAACATAATTAGGGATACGGTGAATTATCGTGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................TTGGTCCAAAAGGTCGAGGA..........................................	20	1	2.00	2	2	0	0	0	0
..................................................................................................................AGAAGGCACGGTAGAGCTCTGGAT....................................................................................................................	24	1	1.00	1	1	0	0	0	0
..............................................................................GAATTCGTCAAAATGGGAAATGCAGC......................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................GAAATGCAGCCATCAATGAAAGAAG.......................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................................................GAAGGCACGGTAGAGCTCTGGAT....................................................................................................................	23	1	1.00	1	0	1	0	0	0
...............................................................................................................................GAGCTCTGGATCTGTTTCTATTCGGT.....................................................................................................	26	1	1.00	1	0	0	0	1	0
................................................................................................AATGCAGCCATCAATGAAAGAAG.......................................................................................................................................	23	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................................................CATAATTAGGGATACGGT............	18	1	1.00	1	0	0	0	1	0
.................................................................................................................AAGAAGGCACGGTAGAGCT..........................................................................................................................	19	1	1.00	1	1	0	0	0	0
................................................................................ATTCGTCAAAATGGGAAATGCAGC......................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
................................................................................................AATGCAGCCATCAATGAAC...........................................................................................................................................	19	1	1.00	1	0	0	0	0	1
.......................................TTTGGTCTGGAGTGCAACA....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
..........................................................................................................................................................................................................AGGTCGAGGATTTCTACAT.................................	19	2	0.50	1	0	0	0	1	0

droVir3

CTGGCACGCTTCACCGTCGACATTATCGGCAGCTGCGCCTTCGGCCTGGACTGCAACAGCCTGAACGATCCGAACGTGGAGTTTCGCCGCCTGGGCCAGAAGACCTTCACGGAGCGGCGACATGGCCGGC---TGGCCTTCGCCCTCATTCAGGCCTTTCCCCGCCTGGCCAAGCGGCTGCACATCAAAATGGTGCAGGACGATGTCAGCGCCTTCTACATGCGCGTCGTCCGCGAGACTCTGGACTATCGCGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................CTTCTACATGCGCGTCGTC.......................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................AACAGCCTGAACGATCCGAACGTGGA..............................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTGGGACGCTTCACGGCCGATGTAATTGGCAACTGCGCCTTTGGGCTCGACTGCGACAGCCTGCGTGATCCAAACGCGCATTTCGTCCGCGTGGGTAAACGGGCTTTAACGGAGCGACGGTATCATGGCTTGTTTGATTTCTTCATATTTGGCTTC---CCAAAGCTGGCACGTCGCATGCATCTGAAACTAACAGTAGAAGAGGTTGAGGAGTTCTATATGCGCATCATTCGCGATACCATCGACTATCGCCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................CTGCGCCTTTGGGCTCGACTG.........................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0
....................TGTAATTGGCAACTGCGCCTTTGGG.................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.........................TTGGCAACTGCGCCTTTGGGCTCGAC...........................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0

droGri2

ATGGGTCGCTATACGGCCGATGTGATTGGCACCTGTGCGTTTGGCATCGATTGCAACAGCCAGCGCAATCCCGATGCCGATTTTGTCAGCATGGGCAAGCGAGCTGTTACGGAACGAGCCTATCATGGACTTTTAGATTTCTTCATTTTTGGCTTT---CCCAAGTTAGCGCGTTTTTTGCATTTGCGATTAACAGTTCCGGAGGTTGAGGACTTCTACATGCGGATCATCAAAGACACCATCGATTATCGTGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................GATTTTGTCAGCATGGGCAAGCGAGCT.....................................................................................................................................................	27	1	1.00	1	1	0
..............................................................GCGCAATCCCGATGCCGATTTTGTC.......................................................................................................................................................................	25	1	1.00	1	1	0
..........................................................................................................................................TTCTTCATTTTTGGCTTT---C..............................................................................................	19	1	1.00	1	1	0
..................................................................................................................................................................................................AGTTCCGGAGGTTGAGGA..........................................	18	1	1.00	1	1	0
..................................................TTGCAACAGCCAGCGCAATC........................................................................................................................................................................................	20	1	1.00	1	1	0
...............................................................CGCAATCCCGATGCCGATTTTG.........................................................................................................................................................................	22	1	1.00	1	1	0

dan_1740

scaffold_13266:2545809-2545959 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.3	-34.3	-33.8