ID:

dan_1730

 Coordinate:

scaffold_13266:1967355-1967505 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF12608-cds]; exon [dana_GLEANR_12624:5]; intron [Dana\GF12608-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAACTAAGTGATGGAAGTGTCAGTCTCAGTGTAACTCTCAAGAAATAGCTTGCAAATGGAATGCTAATTAATTATTTCCTGTATAACCTTAACTATTAAGAATAAGAATATTTAAAAAAAAACCACCACATTAAAAACAAATTTCTTTCTCTTTCTTTTTCTATTAAAATCAAAAAACAAATATAATTTAAACCCAAAAGTGGGTGGCTGAGGGTTCTCCGACCCACTCTACGCCAGTGAGGATAGAAGA
**************************************************((......((......(((((..(((((...........((((.....(((((..((((......................................))))..)))))......))))...........))))))))))....))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V039
embryo
 V055
head
.........................................................................................................................................................................................................TGGGTGGCTGAGGGTTCTC............................... 19 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................ATAACCACCACATTATAAACGAA............................................................................................................. 23 3 1 1.00 1 0 1 0 0 0
........................................................................................................................................................................................................................TCTCCGACCCACTCTACGCCA.............. 21 0 1 1.00 1 0 0 0 1 0
..........................................................................................................................................................................................................GGGTGGCTGAGGGTTGTCCG............................. 20 1 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................................................................................CTACGCCAGTGAGGATAGA... 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................AAGTGGGTGGCTGAGGGT................................... 18 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................GTGGCTGAGGGTTCTCCGA............................ 19 0 1 1.00 1 1 0 0 0 0
..................................................................................................................AAAAAAAAACCACCACAATA..................................................................................................................... 20 1 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................................................................GTGGGGGCTGAGGGTTCTCCG............................. 21 3 2 0.50 1 0 0 1 0 0
..........................................................................................................TAATATTTACAAAAAGACCACC........................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
................................................................................TGTATAACGTTAACTATC......................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1
..............................................................................................................ATTTGAAAAAAGACCACCAC......................................................................................................................... 20 2 4 0.25 1 0 1 0 0 0
..........................................................................................................................................................................................................GTATGGCTGAGGGTTCTC............................... 18 2 4 0.25 1 0 0 0 1 0
....................................................................................................GACTAAGAACATTTAAAAAAA.................................................................................................................................. 21 2 4 0.25 1 0 1 0 0 0
..................................................................................................................AAAAAAAGACCACCACACTA..................................................................................................................... 20 2 4 0.25 1 0 1 0 0 0
.........................................................................................................AAAATATTTCAAAGAAAACCACC........................................................................................................................... 23 3 5 0.20 1 0 1 0 0 0
..................TGTCAGACTCAGGGTCACT...................................................................................................................................................................................................................... 19 3 19 0.16 3 3 0 0 0 0
............................................................................................................ATTTTTAAAAAAAGACCCCCAC......................................................................................................................... 22 3 8 0.13 1 0 0 0 1 0
...........................................................................................................AATCTTTATAATAAAACCACCAC......................................................................................................................... 23 3 9 0.11 1 0 1 0 0 0
...........................................................................................................GATTTTTACAAAAAAACCACCA.......................................................................................................................... 22 3 11 0.09 1 0 1 0 0 0
.......................................................................................................................................................................................ATAATTTTAACCCAAAAGG................................................. 19 2 13 0.08 1 0 0 0 0 1
................................................................................................................ATAAAAAAAACCCACCACA........................................................................................................................ 19 2 20 0.05 1 0 0 0 1 0
......................................................................TCTTATTTTCTGTATAACCT................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1
.............................................................................................................TATGTAATAAGAAACCACCA.......................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
.............................................................................................................TATTTGAAAGAAGACCACCA.......................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................AAAAGTGGCAGGCTGAGGGG................................... 20 3 20 0.05 1 0 0 0 0 1
...........................................................................................................AATAGTTGAAAAAAAACCA............................................................................................................................. 19 2 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CTTTGATTCACTACCTTCACAGTCAGAGTCACATTGAGAGTTCTTTATCGAACGTTTACCTTACGATTAATTAATAAAGGACATATTGGAATTGATAATTCTTATTCTTATAAATTTTTTTTTGGTGGTGTAATTTTTGTTTAAAGAAAGAGAAAGAAAAAGATAATTTTAGTTTTTTGTTTATATTAAATTTGGGTTTTCACCCACCGACTCCCAAGAGGCTGGGTGAGATGCGGTCACTCCTATCTTCT
**************************************************((......((......(((((..(((((...........((((.....(((((..((((......................................))))..)))))......))))...........))))))))))....))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
............................................................................................................................................CTAAAGAAAGACAATGAAAAAGAT....................................................................................... 24 3 3 0.33 1 0 1 0 0
.....................................................GTTGACCTTACCATTAATTA.................................................................................................................................................................................. 20 2 4 0.25 1 1 0 0 0
............................................TTATCGAACGTTTAACTTAAGC......................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 1
.............................................................................................................................................GTAAGAAAGAGAAAGAAAAAG......................................................................................... 21 2 4 0.25 1 1 0 0 0
..................ACAGTCTGAGTCCCAGTGA...................................................................................................................................................................................................................... 19 3 19 0.21 4 0 4 0 0
................................................................................................................................................AGAAAGAGAAAGGAAAAGACA...................................................................................... 21 2 6 0.17 1 1 0 0 0
..............................................................................................................................................GAAGAAAGAGAAAGAAAAA.......................................................................................... 19 1 8 0.13 1 0 0 1 0
...............................................................................................................................................AAGAAAGAGAAAGAAAAATA........................................................................................ 20 1 10 0.10 1 0 0 1 0
................................................................................................................................................AGGAAGAGAGAGAACAAGATAA..................................................................................... 22 3 10 0.10 1 0 0 1 0
.................................................GAACGTTTACCTTGCTAT........................................................................................................................................................................................ 18 2 10 0.10 1 0 1 0 0
...............................................................................................................................................AAGAAAGAGAAAGAAATACGTA...................................................................................... 22 3 15 0.07 1 0 0 1 0
..............................................................................................................................................AAAGTACGAGAAAGAAAAAAATA...................................................................................... 23 3 16 0.06 1 0 0 1 0
..................................................................................................................................................CCAGAGAAAGGAAAAGATAAT.................................................................................... 21 3 16 0.06 1 1 0 0 0
...............................................................................................................................................AAGAAAGAGGAAGAAAAA.......................................................................................... 18 1 18 0.06 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:1967305-1967555 + dan_1730 GAAAC-------------TAAGTGATG--GAAGTGTCAGTCTCAGTG-------------------------------------------------------------------------------------TAA----CTCT---CAAGAAATAGCTTGC---AAA-----------------------TGGAATG------------CTAATTAATTATTTCCTGTATAACCTTAACTATTAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGAAT-------------------AT---------------------------------------------------TTAAAAAAA--------------------AA-----------------------CCACCACATTAAAAACAAATTTCTTTCTCTTTCTTTTTCT---A---TTAAAATCAA-----------------------------------------------------------------------------------AA------------AACAAATATAATT---------------T------------------------AA-A--CCCAAAAGTGGGTGGCTGAGGGTTCTCCGACCCACTCTACGCCAGTGAGGATAGAAGA
droBip1 scf7180000396730:2953087-2953395 + GATAC-------------TAAG-------------------TCAGTG-------------------------------------------------------------------------------------TAA----TTAT---AAAGAAATAGCTTG----CAA-----------------------TGGAATG------------CTAATTAATAACTTCCTGTATAACCTTAAATCTTAAGAA--------------------------------------------------------------------------------------------------------------------------------------TATAAAAAAAGGTTTA------TT---------------------------------------------------------------------------------------------------GTTTCAAA-A---CCTCCTTCC-------TTAATAAGAATATTGAAAAAAAAAAAAACTAAACGAA------------------------------CCCCCACATTAAAAACAAATTTCTTTCTCTTTCTTTTTCT---A---TTTGCATTGC----------------------------CCCC----TC-----GATCC----CTCA--------------------------TAATA-TCC---CACAAACCCCATAATT---------------TA------------------------AA----CATAAAGTGGGTGGCTGAGGGTTCACCGACCCACTCAACGCCAGTGAGGATAGAAGA
droKik1 scf7180000302471:1551382-1551694 - AGATA-------------TAAGTATGG--AAT------------------------------------------------------------GG----------------------GTCAAACTCTACA---------------------------------------------------------------GAATA------------ATTAA---GAA-------CTTAACCCTAATTA-TAAGGT---------------------------------------------------------------------------------------------------------------------------------------------------CTAAACAAATTGTAACCAA---AGA------------------------------------------------------T-------------------ATATATTTAA-AAAGAATA-C---TTTCACCCT-------TTAATAAGAACCTTGA------------------GTGTTGTTCAT---------------------CATCCCACATTTAAAACGAATTTCTTTCTCTTTCTTTT-TT--CA---ATTGCATTGCT------TCTT------------------TCC---AAC-----CCACC----CTCC-CAC--AA------A--AA----------------------AAACCAAAAATTG---------------TCCAATGTAC------AATATACAA--A----ATCTCAGTGGGTGGCTGAGGGTTCTCCCACCCACTCGACGCCAGTGAGGATAGAAGA
droFic1 scf7180000454039:584250-584618 - GAAATA--------------AATAATAGTTA------------A------------------------------------------------GG-G-CCAAATTTA-------TAT--------GTACACAATAA----TTACGAAAAAGAAAAAGCTTG----CAA-----------------------TGGAATG------------ATTAA---AA--------CCTAACCCTAACTT-TAAGGT---------------------------------------------------------------------------------------------------------------------------------------------------TGAAGTAAA-TGTAATCAAAACAGAAACAGACTT-AATGT---GTAAAATC-TTAATCAT---A----------CGGAAT-------------------GT----TGTC-CTCTAAGA-A---CGTTCAATT-------TTAATACGAATTTTGA------------------GTAT------T---------------------CATCCCACATTTAAAACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCA---ACC-----CCACC----CTCC-CAC---------------------------------------AAATCATAATT---------------TCCGGTTGTAAAAAAAA-----CAAAAA----ATCACAGTGGGTGGCCGACAATTCCCCCTCCCACTCAACGCCAGTGAGGATAGAAGA
droEle1 scf7180000487371:194-545 + TAAATA------------------ATATCTG------------A------------------------------------------------GG-G-ACAAACATATCTGTGG---GTAAAACTTG-ATAAATAG----TTATG---AAGAACCAGCTTG----CAA-----------------------TGGAATG------------TTTAA---AA--------ACTAACCCTAATTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------AACAGTAAA-TGTAAACAA-----------------ATGT---GTTAAAAC-TTTTTCCA---ACATGTTTAATGAGAAT-------------------GT----CTAT-TCTTAAGA-A---ATTTTCATT-------TTATTAAGAATCTTGA------------------GTAT------T---------------------CTTCCCACATTAAAAACGAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCC---AAC-----CT--CCTCCCTCA----------------------------------------------ACATAATT---------------TACAATTAAA-----A-----------A----AACTTAGTGGGTGGCTGAGGGTTCTCCCACCCACTCAACGCCAGTGAGGATAGAAGA
droRho1 scf7180000772433:34145-34514 + AAAATA------------------ATATCTA------------A------------------------------------------------GG-G--------TATTAGTGG---GCTAGACTTG-CTCATTAA----TTATGAAGAAGAATCAGCTTG----CAA-----------------------TGGAATT------------T-TAA---AA--------ACTAACTCTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTAAA-TGTAATCAAACTAGA---TGACTTAAATGT---GTAAAAGA-AATGTTCT---ACATGTTGAATGGGAAT-------------------GT----TTAT-TCTTAAGA-G---ATTTCCATT-------TTAATAAGAATCCTGA------------------GTAT------T---------------------CTCCCCACATTAAAAACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCC-------------ACC----CTCCACAC-------------------------------------AAAAAACATAATT---------------TACGATTTAA----AAA-----CCAAAA----CTCATAGTGGGTTGCTGAGGGTTCCCCCACCCATTCAACGCCAGTGAGGATAGAAGA
droBia1 scf7180000302143:2767094-2767473 - TAAAC-------------TA-------TC------------TTAGAGTATTAACAAATACTATGACACACTTATTGATGT------------------------------------GAG---------AAAATTA----TTAAATAGAAGAAACAGCTTG----AAA-----------------------TGGAATG------------CTTTA----A--------ACTAACAATATTTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------TGGAGTATA-TGTAACCAAGTAAAA---TGACCA-AATGTTAAGCAAA-ATCA----CGGACATCGTCTAGAATGGGAAT-------------------TA----TAAT-GTTTAAGA-T---CTTCCCATT-------TTAATAAGAATCTTGA------------------GTAT------T---------------------CAACCTATTTTAAACACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCA----TC-----C-AAA----CTCCACAC---------------------------------------AAAACTTTATT---------------TACGGTTAAA-----AA-----AAAA---------ATAGTGGGTGGCTGAGGGTTCACCCACCCACTCAACGCCAGTGAGGATAGAAGA
droTak1 scf7180000415379:149289-149672 - AAAATA------------------TAAAG--------------------------------------------------T------------GGGATCATAATTTATGTGTGT---GTAAAACTTTATAAAATAA----TTATATAAAAGAAACAGTTTG----CAA-----------------------TGAAATG------------CTAAA---GA--------TCTAACATTAATTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTATA-TGTATTAAAATTAGA---TTACAT-TATCT---GTAAAAAA-TG-AGTCT---ACATATTGAATGGGAAT-------------------GT----TTAT-CATAGAGA-T---CTTCCCATT-------TTAATAAGAATCTTGA------------------GTAT------T---------------------CAACCCACATTAAACACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCC---ACC-----CCAAA----CTCCACAC---------------------------------------AAAACATTATT---------------TACGATTTAAAAAAAAA-----CAAAAA----CTGAAAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGA
droEug1 scf7180000409474:2660696-2661045 + TAAATA------------G-----AAATG--------------------------------------------------TGAGATATTAAGAGG-G-CTAAAAACA-------TAT--------TTACTGAATAT----CTATATAAATGAAACAGCTTG----CAA-----------------------TGGAATG------------CCTAA---AA--------TCTAATATTAATTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTAAA-TGTACTTAAATTAGA---TGACTA-AATGT---GTAAAACC-TG-ATTCA---AGATGTTGAATGGGAAT-------------------GTTTCTTTAT-A----------------------------------------------------------------------TAT---------------------CACCCAACATTAAAAACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCCCACACC-----CCACC----CTCTCCAC---------------------------------------AAAACATAATT---------------TACGATTTAA-----AA-----CATAAT----CTCTTAGTGGGTGGCTGAGGGCTCTCCCACCCATTCAACGCCAGTGAGGATAGAAGA
dm3 chr2R:15296049-15296405 - GGAACA------------------TATTC-----------------------------------------TTA-------------------------------TG-------TAT--------GTTAAAAATAAACATTT-CG---AA-AAAC-ACTTG----CAT-----------------------TGGAATG------------CCTAC---GA--------TGTAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTAAA-CGAATTCACATAAGA---TCAC----ACGT---GTAAAAATCT--ATCGA---ACA-GTTGAATGGGAAT-------------------GTTTGTTTAT-AATTAAGAAT---CTTCCCATA-------TTGATATGAATCTT-A------------------GTAT------T---------------------CACTCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCC---ACC-----CCACC----CTCAACAC-------------------------------------ACAACACATAATT---------------TACAATATAA-----AA-----CAAAAT----ATGACAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGA
droSim2 2r:15947985-15948339 - dsi_9126 GGAATA------------------AATTC-----------------------------------------TTA-------------------------------TA-------TAT--------GTTAAAAATAAACATTT-C--------AAC-ACTTG----CAC-----------------------TGGAGTG------------CCTAC---GA--------TGTAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTACA-AGAATTCACATAAGA---TCACA--CGTGT---GTAAAAATCT--ATCGA---ACA-GTTGAATGGGAAT-------------------GTGTGTTTAT-AATTAAGA-T---CTTCCCATA-------TTGATATGAATCTT-A------------------GTAT------T---------------------CACTCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCCC--ACC-----CCACC----CTCAACAC-------------------------------------ACAACAAATAATT---------------TACAATATAA-----AA-----CAAAAT----ATGACAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGA
droSec2 scaffold_1:12808633-12808979 - GGAATA------------------AATTC-----------------------------------------TTA-------------------------------TA-------TAT--------GTTAAAAATAAACATTT-CG---AA-AAAC-ACTTG----CAC-----------------------TGGAATG------------ACTAC---GA--------TGTAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTAAA-AGAATTCACATAAGA---TCAC----ACGT---GTAAAAATCT--A------------TCGAATGGGAAT-------------------GTATGTTTAT-AATTAAGA-T---CTTCCCATA-------TTGATATGAGT--T-A------------------GTAT------T---------------------CACTCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCCA--ACC-----CCACC----CTCAACAC-------------------------------------ACAACACATAATT---------------TACAATAAAA-----AA-----CAAAAT----ATGACAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGA
droYak3 2R:13880001-13880346 + GGAATA------------------TTA-------------------------------------------CT--------------------GG-A-TTAAA--TA-------CAT--------GTTGAGCATAAAAAGTTATG----A-AATC-AGTTG----CAC-----------------------TGGAATG------------CCCAA----A--------TATAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTATA-ATTATTCACATAAGA---CTACTT-AATGT---GTAAAAAT------------------CGAATGGGAAT-------------------GT----TTAT-TTTTAAGA-T---CTTCCCATA-------TTCTTATGAATCCT-A------------------GTAT------T---------------------CAATCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTAAT----------------------------CCC---ACC-----CCAAAC---TTCTACAC---------------------------------------AACACATAATT---------------TACAATATAA-----AA-----AAAAAT----ATCACAGTGGGTGGCTGAAGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGA
droEre2 scaffold_4845:9494616-9494887 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT---------------------------------------------------------------------------------------------------------------------------------------------------TGATGTAAA-AGTAATCAAATAAGA---CGACTT-AATGT---GTAAAAATCG--ATCCA---TCA-GTTTAAGGGGAAT-------------------GT----TTATCTTTTAAGA-T---CTTCCCATA-------TAGATATGAATCTT-A------------------GTAT------T---------------------CAATCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTAAT----------------------------CCC---ACC-----CCACC----CTCTACAC---------------------------------------AACACATAATT---------------TACAATATAA-----AA-----CTAAAT----ATCGCAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGA
dp5 3:2771232-2771566 + AAAAAA------AAACATTG----------------------------------------------------------------------------------------------------------------------------------------CTCA-------------------------------CAAATG------------CTTGA----------------------------------------------------------------------------------------------------------AGAATTGTATTTCTTAT-----------------------ATAATTAACACTGAAGCGTATTTATGTA-TA-AGATGA------TT--GGCTAAGAGACC---CGAACA-AACGTTGGGCTAA----------------CGCCTATAGACAGCATTTCGATGTAGCTTTAAGTATT----TTAG-ATTTAAGC-A-------------------------------------------------------------TAT------------------CGG-CCCCTAAATT--AAACAAATTTCTTTCTCTTTCTTTT-CT---A---CTTGCATTGT----------------------------CC-C---ACC-----CCATTG---CCCCACAC-------------------CGTAAAAATGCTTGC----------GT------------------GCTCGAATTGA----ACACTAT----AA-C--CTTCAAAGTGGGTCGCTGAGGGTTCACCCACCCATTCGACGCCCGTGAGGATCGAAGA
droPer2 scaffold_2:2961199-2961534 + AAAAAA-----AAAACATTG----------------------------------------------------------------------------------------------------------------------------------------CTCA-------------------------------CAAATG------------CTTGA----------------------------------------------------------------------------------------------------------AGAATTGTATTTCTTAT-----------------------ATAATTAACACTGAAGCGTATTTATGTA-TA-AGATGA------TT--GGCTAAGAGACC---CGAACA-ATCGTTGGGCTAA----------------CGCCTATAGAGAGCATTTCGATGTAGCTTTAAGTATT----TTAG-ATTTAAGC-A-------------------------------------------------------------TAT------------------CGG-CCCCTAAATT--AAACAAATTTCTTTCTCTTTCTTTT-CT---A---CTTGCATTGT----------------------------CC-C---ACC-----CCATTG---CCCCACAC-------------------CGTAAAAATGCTTGC----------GT------------------GCTCAAATTGA----ACACTAT----AA-C--CTTCAAAGTGGGTCGCTGAGGGTTCACCCACCCATTCGACGCCCGTGAGGATCGAAGA
droWil2 scf2_1100000004558:1504657-1505013 + AATTATTTAATTGAACATT-------------------------------------------------------------------------------------------------------------------AATAT-----------------ATC-----ACA-----------------------TGGAATG------------TTTAACAAATTTCAT-------------------C----------------------------------------------------------------------------AGAATGATATT----------------------------TACAATAAGCTACGAAAAGCGTTAGGAAA-TA-AGAGGA------TT----------------------------------------------------------------------------------------G-------------------T---CTTCCCATATCAA---TACTTACACCTTTT-A------------------TAAT------TAAGTCTACATATAATATTTGG-TA-----TTTAAAAACAAATTTCTTTCTCTTTCTTTT-CT---CTATTTTGCATTGAACGTTTTTCCTTCCCTGCCACCCGTTTTC--C---CCCCCATCC-AA-------TG--------------------------TTATG-TCC---A--AAACGCAATATTTTTCACCTGAACCGTGAACA-----------AA----CAAAAAA----CTTGTAGTGGGTCGCCGAGGGTTCACCCACCCATTCAACGCCAGTACGGATCGAAGA
droVir3 scaffold_12875:11167861-11168203 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTG----CATTTGTGTGCAATTAT-----------------------------C------------------CGA----------CGGGG-ATTTATCATATTGTATTGTAAAATGAATTTTTTAAAGAAACTAACGAAGAAACATATCACATAAATGTAAAC-------------TTA-------------------------ACATATATTGTGCAGGGTATTTATGAAATAGAGTT--------------------------------------------------------------------------------------------------TA----TCAG-ATTTAAGC-A---CTTGCATTT-------CA------A------A------------------TCAT--------------------------GA-AATCTAAATT-AAAACAAATTTCTTTCTCTTTCCTTT-TC---A---ATTGCTTATCT----------------------------CCG----TT-----G-AATG---ACCCTCA-----------------------AAAAATGCCCGT--------ACGTAATA---------------CCC--T-TGAAAAAAAT-----CAAATGCACGTAAATAGTGGGTAGCCGAAGGTTCGCCCACCCACTCGACGCCGGTGCGAATCGAGGA
droMoj3 scaffold_6496:15758331-15758666 - AACTC-------------TG---------------------------------------------------------------------------------------------------------TT-----TAA-------------CCAATTTGCTTG----CATTTGAGTGCAATTAT-----------------------------CTAT---GA--------TG-----------A-TGGGGCATATATCATATTGTATTGTAAAATCTAATT---------------------ATATA--------------TCTGAAATAT----------------------------GTGAACTTTTAACTACTAT----ATTTAATAG-CAA-----------------------------------------------------------------------------------------------------------------ATTTAAAA-ATTTCTTTTT-------------ACAAAAATCT---------------------------------------------------GA-AATTTAAATCTAAAACAAATTTCTTTCTCTTTCTTTT-TC---A---ATTGCTTAACT----------------------------CCG----TT-----G-AATG---ACCCCCATATAAAAACAAAACAAAAACCGAAAAAA-CCCC----------ACGTAATA---------------TCCCTT-------------------AAA----ATAATAGTGGGTAGCCGAGGGTTCGCCCACCCACTCGACGCCGGTGCGCATCGAGGA
droGri2 scaffold_15245:13565543-13565889 - AACAT-------------TCAA-------------------T------------------------------------------------------------------------------------------------------------TAAC-ATTTGCCTGCAGTTGTGTACAAATATAGCCAGGATTAGGTATTCAAAATCTATGTTTAACAAA-------------------------------------------------------------------------------------------TAAATGCTATC-------------TTAAATATTGTTAATAATATAAAGCGAACATTTAACATTGTAGACTATTTAAGAA-CAAAGCTGT------TC-------------------------------------------------------------------------------------------------G-ACTTAAGC-A---CTTTTT-GC----AATTTG---A-A------A------------------ACAT------T-------------------GA-AATCTA-AATAAAAACAAATTTCTTTCTCTTTCTTT--CTATCA---ATTGC-TTGC----------------------------CCCC--------------------TTTAACAA----------A--AT----------------------GAAAAACAAAATG---------------AACAAAATGA----AAAAT--CCAAAACC--ATATAAAGTGGGTAGCCGAAGGTTCGCCCACCCACTCAACGCCGGTGCGGATCGAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAAAC-------------TAAGTGATG--GAAGTGTCAGTCTCAGTG-------------------------------------------------------------------------------------TAA----CTCT---CAAGAAATAGCTTGC---AAA-----------------------TGGAATG------------CTAATTAATTATTTCCTGTATAACCTTAACTATTAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGAAT-------------------AT---------------------------------------------------TTAAAAAAA--------------------AA-----------------------CCACCACATTAAAAACAAATTTCTTTCTCTTTCTTTTTCT---A---TTAAAATCAA-----------------------------------------------------------------------------------AA------------AACAAATATAATT---------------T------------------------AA-A--CCCAAAAGTGGGTGGCTGAGGGTTCTCCGACCCACTCTACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGCTGAGGGTTCTC...............................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCGACCCACTCTACGCCA..............2111.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCCAGTGAGGATAGA...1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGGTGGCTGAGGGT...................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAGGGTTCTCCGA............................1911.001100000
droBip1
GATAC-------------TAAG-------------------TCAGTG-------------------------------------------------------------------------------------TAA----TTAT---AAAGAAATAGCTTG----CAA-----------------------TGGAATG------------CTAATTAATAACTTCCTGTATAACCTTAAATCTTAAGAA--------------------------------------------------------------------------------------------------------------------------------------TATAAAAAAAGGTTTA------TT---------------------------------------------------------------------------------------------------GTTTCAAA-A---CCTCCTTCC-------TTAATAAGAATATTGAAAAAAAAAAAAACTAAACGAA------------------------------CCCCCACATTAAAAACAAATTTCTTTCTCTTTCTTTTTCT---A---TTTGCATTGC----------------------------CCCC----TC-----GATCC----CTCA--------------------------TAATA-TCC---CACAAACCCCATAATT---------------TA------------------------AA----CATAAAGTGGGTGGCTGAGGGTTCACCGACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droKik1
AGATA-------------TAAGTATGG--AAT------------------------------------------------------------GG----------------------GTCAAACTCTACA---------------------------------------------------------------GAATA------------ATTAA---GAA-------CTTAACCCTAATTA-TAAGGT---------------------------------------------------------------------------------------------------------------------------------------------------CTAAACAAATTGTAACCAA---AGA------------------------------------------------------T-------------------ATATATTTAA-AAAGAATA-C---TTTCACCCT-------TTAATAAGAACCTTGA------------------GTGTTGTTCAT---------------------CATCCCACATTTAAAACGAATTTCTTTCTCTTTCTTTT-TT--CA---ATTGCATTGCT------TCTT------------------TCC---AAC-----CCACC----CTCC-CAC--AA------A--AA----------------------AAACCAAAAATTG---------------TCCAATGTAC------AATATACAA--A----ATCTCAGTGGGTGGCTGAGGGTTCTCCCACCCACTCGACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droFic1
GAAATA--------------AATAATAGTTA------------A------------------------------------------------GG-G-CCAAATTTA-------TAT--------GTACACAATAA----TTACGAAAAAGAAAAAGCTTG----CAA-----------------------TGGAATG------------ATTAA---AA--------CCTAACCCTAACTT-TAAGGT---------------------------------------------------------------------------------------------------------------------------------------------------TGAAGTAAA-TGTAATCAAAACAGAAACAGACTT-AATGT---GTAAAATC-TTAATCAT---A----------CGGAAT-------------------GT----TGTC-CTCTAAGA-A---CGTTCAATT-------TTAATACGAATTTTGA------------------GTAT------T---------------------CATCCCACATTTAAAACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCA---ACC-----CCACC----CTCC-CAC---------------------------------------AAATCATAATT---------------TCCGGTTGTAAAAAAAA-----CAAAAA----ATCACAGTGGGTGGCCGACAATTCCCCCTCCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droEle1
TAAATA------------------ATATCTG------------A------------------------------------------------GG-G-ACAAACATATCTGTGG---GTAAAACTTG-ATAAATAG----TTATG---AAGAACCAGCTTG----CAA-----------------------TGGAATG------------TTTAA---AA--------ACTAACCCTAATTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------AACAGTAAA-TGTAAACAA-----------------ATGT---GTTAAAAC-TTTTTCCA---ACATGTTTAATGAGAAT-------------------GT----CTAT-TCTTAAGA-A---ATTTTCATT-------TTATTAAGAATCTTGA------------------GTAT------T---------------------CTTCCCACATTAAAAACGAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCC---AAC-----CT--CCTCCCTCA----------------------------------------------ACATAATT---------------TACAATTAAA-----A-----------A----AACTTAGTGGGTGGCTGAGGGTTCTCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droRho1
AAAATA------------------ATATCTA------------A------------------------------------------------GG-G--------TATTAGTGG---GCTAGACTTG-CTCATTAA----TTATGAAGAAGAATCAGCTTG----CAA-----------------------TGGAATT------------T-TAA---AA--------ACTAACTCTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTAAA-TGTAATCAAACTAGA---TGACTTAAATGT---GTAAAAGA-AATGTTCT---ACATGTTGAATGGGAAT-------------------GT----TTAT-TCTTAAGA-G---ATTTCCATT-------TTAATAAGAATCCTGA------------------GTAT------T---------------------CTCCCCACATTAAAAACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCC-------------ACC----CTCCACAC-------------------------------------AAAAAACATAATT---------------TACGATTTAA----AAA-----CCAAAA----CTCATAGTGGGTTGCTGAGGGTTCCCCCACCCATTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droBia1
TAAAC-------------TA-------TC------------TTAGAGTATTAACAAATACTATGACACACTTATTGATGT------------------------------------GAG---------AAAATTA----TTAAATAGAAGAAACAGCTTG----AAA-----------------------TGGAATG------------CTTTA----A--------ACTAACAATATTTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------TGGAGTATA-TGTAACCAAGTAAAA---TGACCA-AATGTTAAGCAAA-ATCA----CGGACATCGTCTAGAATGGGAAT-------------------TA----TAAT-GTTTAAGA-T---CTTCCCATT-------TTAATAAGAATCTTGA------------------GTAT------T---------------------CAACCTATTTTAAACACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCA----TC-----C-AAA----CTCCACAC---------------------------------------AAAACTTTATT---------------TACGGTTAAA-----AA-----AAAA---------ATAGTGGGTGGCTGAGGGTTCACCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droTak1
AAAATA------------------TAAAG--------------------------------------------------T------------GGGATCATAATTTATGTGTGT---GTAAAACTTTATAAAATAA----TTATATAAAAGAAACAGTTTG----CAA-----------------------TGAAATG------------CTAAA---GA--------TCTAACATTAATTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTATA-TGTATTAAAATTAGA---TTACAT-TATCT---GTAAAAAA-TG-AGTCT---ACATATTGAATGGGAAT-------------------GT----TTAT-CATAGAGA-T---CTTCCCATT-------TTAATAAGAATCTTGA------------------GTAT------T---------------------CAACCCACATTAAACACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCC---ACC-----CCAAA----CTCCACAC---------------------------------------AAAACATTATT---------------TACGATTTAAAAAAAAA-----CAAAAA----CTGAAAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
droEug1
TAAATA------------G-----AAATG--------------------------------------------------TGAGATATTAAGAGG-G-CTAAAAACA-------TAT--------TTACTGAATAT----CTATATAAATGAAACAGCTTG----CAA-----------------------TGGAATG------------CCTAA---AA--------TCTAATATTAATTT-TAAGAT---------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTAAA-TGTACTTAAATTAGA---TGACTA-AATGT---GTAAAACC-TG-ATTCA---AGATGTTGAATGGGAAT-------------------GTTTCTTTAT-A----------------------------------------------------------------------TAT---------------------CACCCAACATTAAAAACAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGC----------------------------CCCCCACACC-----CCACC----CTCTCCAC---------------------------------------AAAACATAATT---------------TACGATTTAA-----AA-----CATAAT----CTCTTAGTGGGTGGCTGAGGGCTCTCCCACCCATTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotal
No Reads
dm3
GGAACA------------------TATTC-----------------------------------------TTA-------------------------------TG-------TAT--------GTTAAAAATAAACATTT-CG---AA-AAAC-ACTTG----CAT-----------------------TGGAATG------------CCTAC---GA--------TGTAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTAAA-CGAATTCACATAAGA---TCAC----ACGT---GTAAAAATCT--ATCGA---ACA-GTTGAATGGGAAT-------------------GTTTGTTTAT-AATTAAGAAT---CTTCCCATA-------TTGATATGAATCTT-A------------------GTAT------T---------------------CACTCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCC---ACC-----CCACC----CTCAACAC-------------------------------------ACAACACATAATT---------------TACAATATAA-----AA-----CAAAAT----ATGACAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---ACC-----CCACC----CTCAACAC-------------------------------------ACAACAC..............................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCCAGTGAGGATAGA...1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGTGGGTGGCTGAGGG....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---ACA-GTTGAATGGGAAT-------------------..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCT--ATCGA---ACA-GTTGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATGACAGTGGGTGGCTGAGGG....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GTTGAATGGGAAT-------------------GTTTG.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAAT---CTTCCCATA-------TTGA..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------T---------------------CACTCCACATTAAAATCAAAT...........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTAAA-CGAATTCACATAAGA---TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATGGGAAT-------------------GTTTGT....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGA---ACA-GTTGAATGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................CATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------GTTTGTTTAT-AATTAAGAAT---CTT...............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACGCCAGTGAGGATAGA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGGAAT-------------------GTTTGTTTAT-AA.............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACA-GTTGAATGGGAAT-------------------GT........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ATCGA---ACA-GTTGAATGGGAAT-------------------GTT.......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATAATT---------------TACAATATAA-----..........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATGGGAAT-------------------GTTTGTTTA.................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ATCGA---ACA-GTTGAATGG.................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGAATA------------------AATTC-----------------------------------------TTA-------------------------------TA-------TAT--------GTTAAAAATAAACATTT-C--------AAC-ACTTG----CAC-----------------------TGGAGTG------------CCTAC---GA--------TGTAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTACA-AGAATTCACATAAGA---TCACA--CGTGT---GTAAAAATCT--ATCGA---ACA-GTTGAATGGGAAT-------------------GTGTGTTTAT-AATTAAGA-T---CTTCCCATA-------TTGATATGAATCTT-A------------------GTAT------T---------------------CACTCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCCC--ACC-----CCACC----CTCAACAC-------------------------------------ACAACAAATAATT---------------TACAATATAA-----AA-----CAAAAT----ATGACAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTGAGGATAGAAGA2012.00200000020000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGCCAGTGAGGATAGAAGA2312.00200000002000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTCAACGCCAGTGAGGA.......2011.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------------TACAATATAA-----AA-----CAAAAT----ATGA.....................................................2411.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATATAA-----AA-----CAAAAT----ATGACAG..................................................2511.00100010000000000000
droSec2
GGAATA------------------AATTC-----------------------------------------TTA-------------------------------TA-------TAT--------GTTAAAAATAAACATTT-CG---AA-AAAC-ACTTG----CAC-----------------------TGGAATG------------ACTAC---GA--------TGTAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTAAA-AGAATTCACATAAGA---TCAC----ACGT---GTAAAAATCT--A------------TCGAATGGGAAT-------------------GTATGTTTAT-AATTAAGA-T---CTTCCCATA-------TTGATATGAGT--T-A------------------GTAT------T---------------------CACTCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTGAT----------------------------CCCA--ACC-----CCACC----CTCAACAC-------------------------------------ACAACACATAATT---------------TACAATAAAA-----AA-----CAAAAT----ATGACAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGGTGGCTGAGGGTTC.................................1911.0010100
droYak3
GGAATA------------------TTA-------------------------------------------CT--------------------GG-A-TTAAA--TA-------CAT--------GTTGAGCATAAAAAGTTATG----A-AATC-AGTTG----CAC-----------------------TGGAATG------------CCCAA----A--------TATAACATTAATTT-TAAGAC---------------------------------------------------------------------------------------------------------------------------------------------------TGGTGTATA-ATTATTCACATAAGA---CTACTT-AATGT---GTAAAAAT------------------CGAATGGGAAT-------------------GT----TTAT-TTTTAAGA-T---CTTCCCATA-------TTCTTATGAATCCT-A------------------GTAT------T---------------------CAATCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTAAT----------------------------CCC---ACC-----CCAAAC---TTCTACAC---------------------------------------AACACATAATT---------------TACAATATAA-----AA-----AAAAAT----ATCACAGTGGGTGGCTGAAGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGAAGGTTCCCCCACCC.........................2111.00100100000000
......................................................................................................................................................................C-----------------------TGGAATG------------CCCAA----A--------TATAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTT-AATGT---GTAAAAAT------------------CGAATGGGAAT-------------------..........................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT------------------CGAATGGGAAT-------------------GT----TT..................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACGCCAGTGAGGATAGA...2211.00101000000000
droEre2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT---------------------------------------------------------------------------------------------------------------------------------------------------TGATGTAAA-AGTAATCAAATAAGA---CGACTT-AATGT---GTAAAAATCG--ATCCA---TCA-GTTTAAGGGGAAT-------------------GT----TTATCTTTTAAGA-T---CTTCCCATA-------TAGATATGAATCTT-A------------------GTAT------T---------------------CAATCCACATTAAAATCAAATTTCTTTCTCTTTCTTTT-CT---A---TTTGCATTAAT----------------------------CCC---ACC-----CCACC----CTCTACAC---------------------------------------AACACATAATT---------------TACAATATAA-----AA-----CTAAAT----ATCGCAGTGGGTGGCTGAGGGTTCCCCCACCCACTCAACGCCAGTGAGGATAGAAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGCTGAGGGTTCCCCCACC..........................2311.0010100000
dp5
AAAAAA------AAACATTG----------------------------------------------------------------------------------------------------------------------------------------CTCA-------------------------------CAAATG------------CTTGA----------------------------------------------------------------------------------------------------------AGAATTGTATTTCTTAT-----------------------ATAATTAACACTGAAGCGTATTTATGTA-TA-AGATGA------TT--GGCTAAGAGACC---CGAACA-AACGTTGGGCTAA----------------CGCCTATAGACAGCATTTCGATGTAGCTTTAAGTATT----TTAG-ATTTAAGC-A-------------------------------------------------------------TAT------------------CGG-CCCCTAAATT--AAACAAATTTCTTTCTCTTTCTTTT-CT---A---CTTGCATTGT----------------------------CC-C---ACC-----CCATTG---CCCCACAC-------------------CGTAAAAATGCTTGC----------GT------------------GCTCGAATTGA----ACACTAT----AA-C--CTTCAAAGTGGGTCGCTGAGGGTTCACCCACCCATTCGACGCCCGTGAGGATCGAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAGGGTTCACCCACCCATTCGA...................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAGGGTTCACCCACCCATT......................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC----------GT------------------GCTCGAATTGA----ACACTAT----AA-C--CT........................................................2911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGGTCGCTGAGGGTTCA................................2011.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCTGAGGGTTCACCCACC..........................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGAGGGTTCACCCACCCATT......................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGC----------GT------------------GCTCGAATTGA----A..........................................................................2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCGTGAGGATCGAAG.1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGGTCGCTGAGGGTTC.................................1911.0010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCCGTGAGGATCGAAG.2011.0010100000000
droPer2
AAAAAA-----AAAACATTG----------------------------------------------------------------------------------------------------------------------------------------CTCA-------------------------------CAAATG------------CTTGA----------------------------------------------------------------------------------------------------------AGAATTGTATTTCTTAT-----------------------ATAATTAACACTGAAGCGTATTTATGTA-TA-AGATGA------TT--GGCTAAGAGACC---CGAACA-ATCGTTGGGCTAA----------------CGCCTATAGAGAGCATTTCGATGTAGCTTTAAGTATT----TTAG-ATTTAAGC-A-------------------------------------------------------------TAT------------------CGG-CCCCTAAATT--AAACAAATTTCTTTCTCTTTCTTTT-CT---A---CTTGCATTGT----------------------------CC-C---ACC-----CCATTG---CCCCACAC-------------------CGTAAAAATGCTTGC----------GT------------------GCTCAAATTGA----ACACTAT----AA-C--CTTCAAAGTGGGTCGCTGAGGGTTCACCCACCCATTCGACGCCCGTGAGGATCGAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATTATTTAATTGAACATT-------------------------------------------------------------------------------------------------------------------AATAT-----------------ATC-----ACA-----------------------TGGAATG------------TTTAACAAATTTCAT-------------------C----------------------------------------------------------------------------AGAATGATATT----------------------------TACAATAAGCTACGAAAAGCGTTAGGAAA-TA-AGAGGA------TT----------------------------------------------------------------------------------------G-------------------T---CTTCCCATATCAA---TACTTACACCTTTT-A------------------TAAT------TAAGTCTACATATAATATTTGG-TA-----TTTAAAAACAAATTTCTTTCTCTTTCTTTT-CT---CTATTTTGCATTGAACGTTTTTCCTTCCCTGCCACCCGTTTTC--C---CCCCCATCC-AA-------TG--------------------------TTATG-TCC---A--AAACGCAATATTTTTCACCTGAACCGTGAACA-----------AA----CAAAAAA----CTTGTAGTGGGTCGCCGAGGGTTCACCCACCCATTCAACGCCAGTACGGATCGAAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTACGGATCGAA..1812.00200020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGTTTTC--C---CCCCCATCC-AA-------................................................................................................................................................................2211.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACGCCAGTACGGA.......1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCGCCGAGGGTTCACC..............................1911.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCATTCAACGCCAGTACGG........2111.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCATTGAACGTTTTTCCT...........................................................................................................................................................................................................2111.00101000
droVir3
G-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTG----CATTTGTGTGCAATTAT-----------------------------C------------------CGA----------CGGGG-ATTTATCATATTGTATTGTAAAATGAATTTTTTAAAGAAACTAACGAAGAAACATATCACATAAATGTAAAC-------------TTA-------------------------ACATATATTGTGCAGGGTATTTATGAAATAGAGTT--------------------------------------------------------------------------------------------------TA----TCAG-ATTTAAGC-A---CTTGCATTT-------CA------A------A------------------TCAT--------------------------GA-AATCTAAATT-AAAACAAATTTCTTTCTCTTTCCTTT-TC---A---ATTGCTTATCT----------------------------CCG----TT-----G-AATG---ACCCTCA-----------------------AAAAATGCCCGT--------ACGTAATA---------------CCC--T-TGAAAAAAAT-----CAAATGCACGTAAATAGTGGGTAGCCGAAGGTTCGCCCACCCACTCGACGCCGGTGCGAATCGAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGTTCGCCCACCCACT......................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACGCCGGTGCGAATCGAG..2311.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTAGCCGAAGGTTCGCC..............................2011.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTATCT----------------------------CCG----TT-----G-AATG---AC................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGTTCGCCCACCCACTCGAC..................2411.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACCCACTCGACGCCGGTGCG.........2411.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
AACTC-------------TG---------------------------------------------------------------------------------------------------------TT-----TAA-------------CCAATTTGCTTG----CATTTGAGTGCAATTAT-----------------------------CTAT---GA--------TG-----------A-TGGGGCATATATCATATTGTATTGTAAAATCTAATT---------------------ATATA--------------TCTGAAATAT----------------------------GTGAACTTTTAACTACTAT----ATTTAATAG-CAA-----------------------------------------------------------------------------------------------------------------ATTTAAAA-ATTTCTTTTT-------------ACAAAAATCT---------------------------------------------------GA-AATTTAAATCTAAAACAAATTTCTTTCTCTTTCTTTT-TC---A---ATTGCTTAACT----------------------------CCG----TT-----G-AATG---ACCCCCATATAAAAACAAAACAAAAACCGAAAAAA-CCCC----------ACGTAATA---------------TCCCTT-------------------AAA----ATAATAGTGGGTAGCCGAGGGTTCGCCCACCCACTCGACGCCGGTGCGCATCGAGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGTTCGCCCACCCACT......................2011.001100000
..........................................................................................................................................................................................................................A--------TG-----------A-TGGGGCATATATCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
AACAT-------------TCAA-------------------T------------------------------------------------------------------------------------------------------------TAAC-ATTTGCCTGCAGTTGTGTACAAATATAGCCAGGATTAGGTATTCAAAATCTATGTTTAACAAA-------------------------------------------------------------------------------------------TAAATGCTATC-------------TTAAATATTGTTAATAATATAAAGCGAACATTTAACATTGTAGACTATTTAAGAA-CAAAGCTGT------TC-------------------------------------------------------------------------------------------------G-ACTTAAGC-A---CTTTTT-GC----AATTTG---A-A------A------------------ACAT------T-------------------GA-AATCTA-AATAAAAACAAATTTCTTTCTCTTTCTTT--CTATCA---ATTGC-TTGC----------------------------CCCC--------------------TTTAACAA----------A--AT----------------------GAAAAACAAAATG---------------AACAAAATGA----AAAAT--CCAAAACC--ATATAAAGTGGGTAGCCGAAGGTTCGCCCACCCACTCAACGCCGGTGCGGATCGAGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:51 AM