dan_173

AGTAGAGACGGGGGACTGGGGCTGGGGCGCAGGGTCAGGGATACAAGAGCCGACTGCCGACTCCCAGCCGCCATTGTCCTGCGCAGTGCCTGTGTGCGGGTGGATGGGTGTTGGGGTGGTTGGGTGGTTGGGGGTGCGATGTCAACGCTTTTGCCTTTTGCTGTGGTTTTTCCTCTGCTCATT *********************************....((((((....(((((((((((((((((((..(((((..((((((((.......))))))))..)))))..))))))..)))).)))))))))...))...)))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V106 head	V055 head	V039 embryo	V105 male body
..........GGGGACTTTGGCTGGGGCG..........................................................................................................................................................	19	2	4	2.25	9	8	0	0	0	1
..........GGGGAGTTTGGCTGGGGCGCA........................................................................................................................................................	21	3	6	1.83	11	11	0	0	0	0
.........TGGGGACTTTGGCTGGGGCG..........................................................................................................................................................	20	3	20	1.65	33	29	1	0	0	3
..........GGGGAGTTTGGCTGGGGCGC.........................................................................................................................................................	20	3	20	1.00	20	15	1	0	0	4
.......AGGGGGGACTTTGGCTGGGGCG..........................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0
.........TGGGGAGTGTGGCTGGGGCGCA........................................................................................................................................................	22	3	3	1.00	3	3	0	0	0	0
...............................................................................................................TGGGGTGGTTGGGTGGTTGGG...................................................	21	0	4	0.75	3	0	3	0	0	0
..........GGGGAGTTGGGCTGGGGCGCAC.......................................................................................................................................................	22	3	3	0.67	2	2	0	0	0	0
.........GGGGGAGTGTGGCTGGGGCG..........................................................................................................................................................	20	2	5	0.60	3	3	0	0	0	0
...................................................................................................................GTGGTTGGGTGGTTGGGG..................................................	18	0	5	0.60	3	0	3	0	0	0
......................................................................................................................ATTGGGTGGTTCGGGGTGCGC............................................	21	3	2	0.50	1	0	0	0	1	0
.........GGGGGACTTTGGCTGGGGCG..........................................................................................................................................................	20	2	2	0.50	1	1	0	0	0	0
...............................................................................................................TGGGGTGGTTGGGTGGTTG.....................................................	19	0	5	0.40	2	0	2	0	0	0
.......................................................................................................................TTGGGTGGTTGGGTGTGC..............................................	18	1	3	0.33	1	0	1	0	0	0
.........GGGGGAGTTTGGCTGGGGCGC.........................................................................................................................................................	21	3	6	0.33	2	2	0	0	0	0
..........GGGGACTTTGGCTGGGGC...........................................................................................................................................................	18	2	14	0.29	4	4	0	0	0	0
.................................................................................................................GGGTGGTTGGGTGGTTGGG...................................................	19	0	20	0.25	5	0	5	0	0	0
.........TGGGGACTATGGCTGGGGCG..........................................................................................................................................................	20	3	12	0.25	3	3	0	0	0	0
.........GGGGGAGTATGGCTGGGGCGC.........................................................................................................................................................	21	3	4	0.25	1	1	0	0	0	0
..........GGGGACTTGGGCTGGGGCGG.........................................................................................................................................................	20	2	4	0.25	1	1	0	0	0	0
............................................................................................................TGTCGGGGTGGTTAGCTGGTT......................................................	21	3	4	0.25	1	0	0	1	0	0
..........GGGGAGTTGGGCTGGGGCGC.........................................................................................................................................................	20	2	5	0.20	1	1	0	0	0	0
...........GGGAGTTTGGCTGGGGCGCA........................................................................................................................................................	20	3	20	0.20	4	4	0	0	0	0
...............................................................................................................TGGGGTGGTTGGGTGGTTGG....................................................	20	0	5	0.20	1	0	1	0	0	0
...............................................................................................................TGTGGTGGTTGGGTGGTTGGG...................................................	21	1	6	0.17	1	0	1	0	0	0
.......................................................................................................................TTGGGTTGTTGGGGGTG...............................................	17	1	6	0.17	1	0	0	1	0	0
...............................................................................................................TGGGGTGGTTGGGTGGTT......................................................	18	0	6	0.17	1	0	1	0	0	0
.........CGGGGAGTGTGGCTGGGGCG..........................................................................................................................................................	20	3	20	0.15	3	3	0	0	0	0
....................................................................................................................TGGTTGTGTGGTTGGGGG.................................................	18	1	7	0.14	1	0	0	1	0	0
................................................................................................................GGGGTGGTTGGGTGGTTG.....................................................	18	0	7	0.14	1	0	1	0	0	0
............................................................................................................TGTTGGTGTCGTTGGGTGGT.......................................................	20	2	7	0.14	1	0	0	1	0	0
....................................................................................................................................................TTTTGGCTTTTTCTGTGGTTT..............	21	2	9	0.11	1	0	0	0	1	0
................TGGGGGTGGGGCGCTGGGT....................................................................................................................................................	19	2	9	0.11	1	0	0	1	0	0
..............................................................................................................TTGCGGTGGTTAGGTGGTTGT....................................................	21	3	10	0.10	1	0	0	1	0	0
..........GGGGAGTGTGGCTGGGGCG..........................................................................................................................................................	19	2	10	0.10	1	1	0	0	0	0
............................................................................................................TGCTGGGGTGGTTAGCTGGTT......................................................	21	3	11	0.09	1	0	0	1	0	0
..........GGGGAGTTGGGCTGGGGCG..........................................................................................................................................................	19	2	12	0.08	1	1	0	0	0	0
...............................................................................................................TGTGGTGGTTGGGTGGTTG.....................................................	19	1	13	0.08	1	0	1	0	0	0
.......................................................................................................................TTGGGTTGTTGGGGGAGC..............................................	18	2	13	0.08	1	0	0	1	0	0
...........................................................................................GTGGGCGGGTGGATGGGT..........................................................................	18	1	16	0.06	1	0	1	0	0	0
........................................................................................................TGGGAGTTGGGGTGGCTGG............................................................	19	2	18	0.06	1	0	0	1	0	0
.................................................................................................................GGGTGGTTGGGTGGTTGG....................................................	18	0	20	0.05	1	0	1	0	0	0
......................................................................................................................GTGGGGAGGTTGGGGGGGCG.............................................	20	3	20	0.05	1	1	0	0	0	0
.......................................................................................................................TTGGGTGCTTGGGGGTGT..............................................	18	2	20	0.05	1	0	0	1	0	0
........CGGGGGAGTGGGGCTGC..............................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0
..........GGGGACTGGGGCAAGGGC...........................................................................................................................................................	18	2	20	0.05	1	0	0	1	0	0

AGTAGAGACGGGGGACTGGGGCTGGGGCGCAGGGTCAGGGATACAAGAGCCGACTGCCGACTCCCAGCCGCCATTGTCCTGCGCAGTGCCTGTGTGCGGGTGGATGGGTGTTGGGGTGGTTGGGTGGTTGGGGGTGCGATGTCAACGCTTTTGCCTTTTGCTGTGGTTTTTCCTCTGCTCATT
***********************************....((((((....(((((((((((((((((((..(((((..((((((((.......))))))))..)))))..))))))..)))).)))))))))...))...)))).....***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M044
female body

V106
head

V055
head

V039
embryo

V105
male body

..........GGGGACTTTGGCTGGGGCG..........................................................................................................................................................

2.25

..........GGGGAGTTTGGCTGGGGCGCA........................................................................................................................................................

1.83

.........TGGGGACTTTGGCTGGGGCG..........................................................................................................................................................

1.65

..........GGGGAGTTTGGCTGGGGCGC.........................................................................................................................................................

1.00

.......AGGGGGGACTTTGGCTGGGGCG..........................................................................................................................................................

1.00

.........TGGGGAGTGTGGCTGGGGCGCA........................................................................................................................................................

1.00

...............................................................................................................TGGGGTGGTTGGGTGGTTGGG...................................................

0.75

..........GGGGAGTTGGGCTGGGGCGCAC.......................................................................................................................................................

0.67

.........GGGGGAGTGTGGCTGGGGCG..........................................................................................................................................................

0.60

...................................................................................................................GTGGTTGGGTGGTTGGGG..................................................

0.60

......................................................................................................................ATTGGGTGGTTCGGGGTGCGC............................................

0.50

.........GGGGGACTTTGGCTGGGGCG..........................................................................................................................................................

0.50

...............................................................................................................TGGGGTGGTTGGGTGGTTG.....................................................

0.40

.......................................................................................................................TTGGGTGGTTGGGTGTGC..............................................

0.33

.........GGGGGAGTTTGGCTGGGGCGC.........................................................................................................................................................

0.33

..........GGGGACTTTGGCTGGGGC...........................................................................................................................................................

0.29

.................................................................................................................GGGTGGTTGGGTGGTTGGG...................................................

0.25

.........TGGGGACTATGGCTGGGGCG..........................................................................................................................................................

0.25

.........GGGGGAGTATGGCTGGGGCGC.........................................................................................................................................................

0.25

..........GGGGACTTGGGCTGGGGCGG.........................................................................................................................................................

0.25

............................................................................................................TGTCGGGGTGGTTAGCTGGTT......................................................

0.25

..........GGGGAGTTGGGCTGGGGCGC.........................................................................................................................................................

0.20

...........GGGAGTTTGGCTGGGGCGCA........................................................................................................................................................

0.20

...............................................................................................................TGGGGTGGTTGGGTGGTTGG....................................................

0.20

...............................................................................................................TGTGGTGGTTGGGTGGTTGGG...................................................

0.17

.......................................................................................................................TTGGGTTGTTGGGGGTG...............................................

0.17

...............................................................................................................TGGGGTGGTTGGGTGGTT......................................................

0.17

.........CGGGGAGTGTGGCTGGGGCG..........................................................................................................................................................

0.15

....................................................................................................................TGGTTGTGTGGTTGGGGG.................................................

0.14

................................................................................................................GGGGTGGTTGGGTGGTTG.....................................................

0.14

............................................................................................................TGTTGGTGTCGTTGGGTGGT.......................................................

0.14

....................................................................................................................................................TTTTGGCTTTTTCTGTGGTTT..............

0.11

................TGGGGGTGGGGCGCTGGGT....................................................................................................................................................

0.11

..............................................................................................................TTGCGGTGGTTAGGTGGTTGT....................................................

0.10

..........GGGGAGTGTGGCTGGGGCG..........................................................................................................................................................

0.10

............................................................................................................TGCTGGGGTGGTTAGCTGGTT......................................................

0.09

..........GGGGAGTTGGGCTGGGGCG..........................................................................................................................................................

0.08

...............................................................................................................TGTGGTGGTTGGGTGGTTG.....................................................

0.08

.......................................................................................................................TTGGGTTGTTGGGGGAGC..............................................

0.08

...........................................................................................GTGGGCGGGTGGATGGGT..........................................................................

0.06

........................................................................................................TGGGAGTTGGGGTGGCTGG............................................................

0.06

.................................................................................................................GGGTGGTTGGGTGGTTGG....................................................

0.05

......................................................................................................................GTGGGGAGGTTGGGGGGGCG.............................................

0.05

.......................................................................................................................TTGGGTGCTTGGGGGTGT..............................................

0.05

........CGGGGGAGTGGGGCTGC..............................................................................................................................................................

0.05

..........GGGGACTGGGGCAAGGGC...........................................................................................................................................................

0.05

TCATCTCTGCCCCCTGACCCCGACCCCGCGTCCCAGTCCCTATGTTCTCGGCTGACGGCTGAGGGTCGGCGGTAACAGGACGCGTCACGGACACACGCCCACCTACCCACAACCCCACCAACCCACCAACCCCCACGCTACAGTTGCGAAAACGGAAAACGACACCAAAAAGGAGACGAGTAA *********************************....((((((....(((((((((((((((((((..(((((..((((((((.......))))))))..)))))..))))))..)))).)))))))))...))...)))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M058 embryo	V039 embryo	M044 female body
..................................................................................................................................CCCCACGCGATACTTGCGAA.................................	20	3	2	0.50	1	1	0	0	0
...............................................................................................................ACCCCCCCAACCCACAAACACC..................................................	22	3	6	0.17	1	0	1	0	0
...........................................................................................................CACAACCCCACCAGACCAC.........................................................	19	2	9	0.11	1	0	0	1	0
............................................................................................ACACTCCCACATACCCACAA.......................................................................	20	2	13	0.08	1	0	1	0	0
..................................................................................................CCACCTACCCACGCCCCCA..................................................................	19	2	14	0.07	1	0	0	1	0
..................................................................................................................................CCCCACGAAACATTTGCGA..................................	19	3	15	0.07	1	0	1	0	0
.................................................................................................CTCACCTACCCACAACACC...................................................................	19	2	15	0.07	1	0	0	1	0
..................................................................................................................................................CGTAAACGGAAAACGATA...................	18	2	20	0.05	1	0	1	0	0
................................................................................................................................ACCCCCACGCTGCAATAG.....................................	18	3	20	0.05	1	0	0	1	0
.....................................................................................................................................................................CAAAAAGGAGGCGAATAA	18	2	20	0.05	1	0	0	0	1

TCATCTCTGCCCCCTGACCCCGACCCCGCGTCCCAGTCCCTATGTTCTCGGCTGACGGCTGAGGGTCGGCGGTAACAGGACGCGTCACGGACACACGCCCACCTACCCACAACCCCACCAACCCACCAACCCCCACGCTACAGTTGCGAAAACGGAAAACGACACCAAAAAGGAGACGAGTAA
***********************************....((((((....(((((((((((((((((((..(((((..((((((((.......))))))))..)))))..))))))..)))).)))))))))...))...)))).....***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V055
head

M058
embryo

V039
embryo

M044
female body

..................................................................................................................................CCCCACGCGATACTTGCGAA.................................

0.50

...............................................................................................................ACCCCCCCAACCCACAAACACC..................................................

0.17

...........................................................................................................CACAACCCCACCAGACCAC.........................................................

0.11

............................................................................................ACACTCCCACATACCCACAA.......................................................................

0.08

..................................................................................................CCACCTACCCACGCCCCCA..................................................................

0.07

..................................................................................................................................CCCCACGAAACATTTGCGA..................................

0.07

.................................................................................................CTCACCTACCCACAACACC...................................................................

0.07

..................................................................................................................................................CGTAAACGGAAAACGATA...................

0.05

................................................................................................................................ACCCCCACGCTGCAATAG.....................................

0.05

.....................................................................................................................................................................CAAAAAGGAGGCGAATAA

0.05

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:8145441-8145623 +	dan_173	AGTAGAGACGGGG-GAC-----TGGGGCTGGGGC----GC--------AG-------GGTCAG--GGATACAAG--AGCCGACTGCCGACTCC--C-AGCCGCCATTGTCCTGCGCAGTGCCTGTGTGCG-----------GG------------------TGGATGGGTGTTGGGGTGGTTGG---GTGGTTGGGGGTGCGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTCCTCTG----CTCATT
droBip1	scf7180000396554:756203-756370 +		AGCCGAGGC---GGGACGGGGCAGGGGCAGGGACAGAGGC--------AG-------GGTCAG--GGATACAAG--A---GGCTGCCGACTCC--C-AGCCGCCATTGTCCTGCGCAGTGCCTGTGTGTG---------------------------------------------GGTGGGTGGGTT--GGT----TGTGCGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTCTCCTCTG----CTCATT
droKik1	scf7180000302679:676780-676900 +		AGGG----CGGTGGACCGTGGGAGAGA------C------AAAAGGACAGGA-------CTGAAGGGAGCAAAG--G---GG----------------------------CTGCGCAGTGTCT------G--------------------------------------------------------------------CGCGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTTCCCTGCCCATTGTTT
dp5	4_group1:209618-209779 +		AGTG----------------------------------------------GA-------TTGAAGGG--G-AAG--A---GGCTGCAGCCTCC-TC-CACCGCCATTGTCCTGCGCACTGTCAATGTGTGCGTGCGG--------AGTCTCTATCGGTGCGC---------TTTATGTG--TGT---GTGCGTGTGCGTGTGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTTCCCTG----CTCTTT
droPer2	scaffold_1:205817-205980 +		AGTG----------------------------------------------GA-------TTGAAGGG--G-AAG--G---GGCTGCAGCCTCC-TC-CACCGCCATTGTCCTGCGCACTGTCAATGTGTGCGTGCGG--------AGTCTCTATCGGTGCGC---------TTTATGTGTGTGT---GTGCGTGTGCGTGTGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTTCCCTG----CTCTTT
droWil2	scf2_1100000004521:7869914-7870105 +		GAGAGAGAG-AGAGAGCGCGGGAGGGAGACGGCCAAAAACAATGAGAGAGAACCGGAGGTTAGAGAG--G-AAGAAA---GGTTGCAGCCTCC-TTAAACAGCCATTGTCCTGCGCACTGTCTTTGTGTG-------------------------------TGTCTGTGTGT-----------------GTGTATATATGTGATGTCAAC----G----CTTTTTTGCCTTTTGCTGTGGTTTTT-CCCTG----CTCATT
droVir3	scaffold_12963:3955097-3955191 -		G--------------------------------------------------------------------------------------------------CCGCCATTGTTCAGCGCGATTTGT------GCA-----TGTGTG------------------TGCCCGTGTGCCTGTGTGCGTGAGTT---TT------TGT---------CAACGTCAATGCTTTTGCT-----------------CTCTG----CCCATT
droMoj3	scaffold_6500:7804485-7804614 -		----------------------------------------------------------------------------------CTGCCAATTTTAGC-CGCCGCCATTGTTCAACGCAATTTGT------ACA-----CACGTG------------------TGTTTGTGTGTATGGGTGTGTGAGTT---GTT---GTTGT---------CAACGTCAACGCTTTTGCCTTTTGCA---CATTGTGCCGCGGCTGCTG-CT
droGri2	scaffold_15252:1440442-1440574 +		G--------------------------------------------------------------------------------------------------CCGCCATTGTTCTGCGCAATTTGT------GTGTGCAGCATGTGTGATTGTATGCGGGTGTGTGTTAGTGTGC---------------GTGTGTGCGGGTGT---------AAACGTCAACGCTTTTGCTTTTTGCTGTGTTTTTTGTTTCGGCGGCTCATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

AGTAGAGACGGGG-GAC-----TGGGGCTGGGGC----GC--------AG-------GGTCAG--GGATACAAG--AGCCGACTGCCGACTCC--C-AGCCGCCATTGTCCTGCGCAGTGCCTGTGTGCG-----------GG------------------TGGATGGGTGTTGGGGTGGTTGG---GTGGTTGGGGGTGCGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTCCTCTG----CTCATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................TGGGGTGGTTGG---GTGGTTGGG.................................................................	21	4	0.75	3	0	0	0	0	0	3
................................................................................................................................................................................GTGGTTGG---GTGGTTGGGG................................................................	18	5	0.60	3	0	0	0	0	0	3
............................................................................................................................................................................TGGGGTGGTTGG---GTGGTTG...................................................................	19	5	0.40	2	0	0	0	0	0	2
..............................................................................................................................................................................GGGTGGTTGG---GTGGTTGGG.................................................................	19	20	0.25	5	0	0	0	0	0	5
............................................................................................................................................................................TGGGGTGGTTGG---GTGGTTGG..................................................................	20	5	0.20	1	0	0	0	0	0	1
............................................................................................................................................................................TGGGGTGGTTGG---GTGGTT....................................................................	18	6	0.17	1	0	0	0	0	0	1
.............................................................................................................................................................................GGGGTGGTTGG---GTGGTTG...................................................................	18	7	0.14	1	0	0	0	0	0	1
..............................................................................................................................................................................GGGTGGTTGG---GTGGTTGG..................................................................	18	20	0.05	1	0	0	0	0	0	1

droBip1

AGCCGAGGC---GGGACGGGGCAGGGGCAGGGACAGAGGC--------AG-------GGTCAG--GGATACAAG--A---GGCTGCCGACTCC--C-AGCCGCCATTGTCCTGCGCAGTGCCTGTGTGTG---------------------------------------------GGTGGGTGGGTT--GGT----TGTGCGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTCTCCTCTG----CTCATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGG----CGGTGGACCGTGGGAGAGA------C------AAAAGGACAGGA-------CTGAAGGGAGCAAAG--G---GG----------------------------CTGCGCAGTGTCT------G--------------------------------------------------------------------CGCGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTTCCCTGCCCATTGTTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGTG----------------------------------------------GA-------TTGAAGGG--G-AAG--A---GGCTGCAGCCTCC-TC-CACCGCCATTGTCCTGCGCACTGTCAATGTGTGCGTGCGG--------AGTCTCTATCGGTGCGC---------TTTATGTG--TGT---GTGCGTGTGCGTGTGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTTCCCTG----CTCTTT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AGTG----------------------------------------------GA-------TTGAAGGG--G-AAG--G---GGCTGCAGCCTCC-TC-CACCGCCATTGTCCTGCGCACTGTCAATGTGTGCGTGCGG--------AGTCTCTATCGGTGCGC---------TTTATGTGTGTGT---GTGCGTGTGCGTGTGATGTCAAC----------GCTTTTGCCTTTTGCTGTGGTTTTTTCCCTG----CTCTTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

GAGAGAGAG-AGAGAGCGCGGGAGGGAGACGGCCAAAAACAATGAGAGAGAACCGGAGGTTAGAGAG--G-AAGAAA---GGTTGCAGCCTCC-TTAAACAGCCATTGTCCTGCGCACTGTCTTTGTGTG-------------------------------TGTCTGTGTGT-----------------GTGTATATATGTGATGTCAAC----G----CTTTTTTGCCTTTTGCTGTGGTTTTT-CCCTG----CTCATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..GAGAGAG-AGAGAGCGCGGG...............................................................................................................................................................................................................................................	19	6	0.17	1	0	0	1	0	0
...........................................................................................................................TTGTGTG-------------------------------TGTCTGTGTGT-----------------G.......................................................................	19	20	0.05	1	0	1	0	0	0
............................................................................................................................TGTGTG-------------------------------TGTCTGTGTGT-----------------G.......................................................................	18	20	0.05	1	0	1	0	0	0

droVir3

G--------------------------------------------------------------------------------------------------CCGCCATTGTTCAGCGCGATTTGT------GCA-----TGTGTG------------------TGCCCGTGTGCCTGTGTGCGTGAGTT---TT------TGT---------CAACGTCAATGCTTTTGCT-----------------CTCTG----CCCATT

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

----------------------------------------------------------------------------------CTGCCAATTTTAGC-CGCCGCCATTGTTCAACGCAATTTGT------ACA-----CACGTG------------------TGTTTGTGTGTATGGGTGTGTGAGTT---GTT---GTTGT---------CAACGTCAACGCTTTTGCCTTTTGCA---CATTGTGCCGCGGCTGCTG-CT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

G--------------------------------------------------------------------------------------------------CCGCCATTGTTCTGCGCAATTTGT------GTGTGCAGCATGTGTGATTGTATGCGGGTGTGTGTTAGTGTGC---------------GTGTGTGCGGGTGT---------AAACGTCAACGCTTTTGCTTTTTGCTGTGTTTTTTGTTTCGGCGGCTCATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_173

scaffold_12916:8145491-8145573 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-48.5	-48.5	-48.3