ID:

dan_1724

 Coordinate:

scaffold_13266:1870111-1870261 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.2 -18.9 -18.9

Flybase annnotation

exon [dana_GLEANR_12618:2]; CDS [Dana\GF12602-cds]; intron [Dana\GF12602-in]

No Repeatable elements found

mature
  1. scaffold_12916:12931099-12931117 +
  2. scaffold_12929:280856-280874 -
  3. dan_1724  scaffold_13266:1870209-1870227 +
  4. scaffold_13266:2942045-2942063 +
  5. scaffold_13266:4926190-4926208 +
  6. dan_2278  scaffold_13335:2185349-2185367 -
  7. scaffold_13337:6534805-6534823 -
  8. scaffold_13337:9471608-9471626 -
  9. scaffold_13337:9641278-9641296 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACTGTCTGAACGAACTCAAGTCCCTGATACTGGAGGCAATGAAGAAAGACGTAAGTATCCTTATATATGGGAGTCCTCACGCGATTTAGAAACTAGGCCCCCGATCGAAATCAGTTCACGTTCCCTATAAATTATGTCAGGTCATAAAAAAAAAAAAAACAGAAACCCTTGAGACCACAAGTGTTCGAAGGCGGCAAAAGTACAAAAGGATAAAAAAAAAGAAACCAACTCCTACGACAAACGGACAGACG
**************************************************((.((..((((.......))))...)).))................(((.((..(((((......................(((((......)))))....................((((......))))..))))).)).)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 M044
female body
....................................CAGTGAAGAACAACGTAAGT................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 1 0
......................................................................................................................................................................................................................AAAAAAGAATACAACCCCTACG............... 22 3 2 0.50 1 0 1 0 0
...................................................................................................................................................AAAAAAACAAAACAGAAACCC................................................................................... 21 1 2 0.50 1 1 0 0 0
..........................ATACTGGAGGAAATGAAAAAA............................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 0 1
................................................................................................................................................................................................................GATAACAAAAAAGAAACCAACCGC................... 24 3 2 0.50 1 1 0 0 0
.....................................................................................................................................................................................................................AAAAAAAGAAACCAACACC................... 19 1 5 0.40 2 2 0 0 0
........................................................................................................................................................................................................................AAAAGAAAACAACTCCTACCCC............. 22 3 3 0.33 1 1 0 0 0
...........................................................................................................................................................................................................................AGAAAGCAACACCTACGAC............. 19 2 3 0.33 1 1 0 0 0
..................................................................................................................................................AAAAAAAAAAAACCAGAAACCC................................................................................... 22 1 4 0.25 1 1 0 0 0
...............................................................................................................................................................................................................AGATAAAAACAAAGAAACCAACAC.................... 24 3 4 0.25 1 1 0 0 0
...................................................................................................................................................................................................................AAAAAAAAAGAAACCAAC...................... 18 0 4 0.25 1 1 0 0 0
....................................................................................................................................................AAAAAAAAAAACAGAAACC.................................................................................... 19 0 9 0.22 2 2 0 0 0
...................................................................................................................................................................................................GAAAGTACAAAAGGAAAAGAAAAAA............................... 25 3 5 0.20 1 1 0 0 0
....................................................................................................................................................AAAAAAAAAAACAGGAACC.................................................................................... 19 1 20 0.20 4 4 0 0 0
....................................................................................................................................................................................................................AAAAAAAAGAAACCAACACC................... 20 1 5 0.20 1 1 0 0 0
.....................................................................................................................................ATTTCAGCTCATAAAAAAAA.................................................................................................. 20 2 6 0.17 1 0 1 0 0
.................................................................................................................................................AAAAAGAAAAAAAACAGAAACC.................................................................................... 22 1 6 0.17 1 1 0 0 0
................................................................................................................................................................................................................GATAAAAAACAAGAAACC......................... 18 1 7 0.14 1 1 0 0 0
...............................................................................................................................................................................................................GGAGCAAAAAAAAGAAAGCAACT..................... 23 3 8 0.13 1 1 0 0 0
....................................................................................................................................................AAAAAAAAAAACAGAACCCC................................................................................... 20 1 8 0.13 1 1 0 0 0
.................................................................................................................................................AAAAAAAAAAAAAACAGGAACC.................................................................................... 22 1 9 0.11 1 1 0 0 0
..............................................................................................................................................................................................................AGGAAAAAAAAAAAGAAACC......................... 20 1 9 0.11 1 1 0 0 0
................................................................................................................................AAATACTGTCAGGGCATAAA....................................................................................................... 20 3 10 0.10 1 0 0 1 0
..................................................................................................................................................AAAAAAAAAAAAACAGAAACGC................................................................................... 22 1 10 0.10 1 1 0 0 0
........................................................................................................................................................................................................TACAGTAGGATAAAAAAAA................................ 19 2 11 0.09 1 0 0 0 1
..................................................................................................................................................AAAAAAAAAAAAACAGAAAACCT.................................................................................. 23 1 11 0.09 1 1 0 0 0
.................................................................................................................................................................................................................AGATAAAAAAAGAAACCAACACC................... 23 3 13 0.08 1 1 0 0 0
...........................................................................................................................................................................................................AAAATGACAAAAAAAAAGAAACC......................... 23 2 13 0.08 1 1 0 0 0
.................................................................................................................................................................................................GCGAAAGTACAAAAGGAAA....................................... 19 2 14 0.07 1 1 0 0 0
...................................................................................................................................................AAAAAAAAAGAACAGAAACC.................................................................................... 20 1 16 0.06 1 1 0 0 0
...........................................................................................................................................................................................................AAGAGGATAAAAAAAGAGAAA........................... 21 2 16 0.06 1 0 1 0 0
..................................................................................................................................................AAAAAAAGAAAAACATAAACCC................................................................................... 22 2 17 0.06 1 1 0 0 0
...................................................................................................................................................................................................................AAAAAAACAGAAACCAACACC................... 21 2 17 0.06 1 1 0 0 0
.......................................................................................................................................................................................................................AAAAAGAAACCAACACCCAC................ 20 2 18 0.06 1 1 0 0 0
............................................................ATAAATATGGGAGTCCGCA............................................................................................................................................................................ 19 3 18 0.06 1 1 0 0 0
....................................................................................................................................................................................................................AAAAAAAAGAAACCAACAC.................... 19 1 18 0.06 1 1 0 0 0
.....................................................................................................................................................................................................................AAAAAAGGAAACCAACCCC................... 19 2 20 0.05 1 1 0 0 0
....................................................................................................................................................AAAAAAAAAAACGGAAACC.................................................................................... 19 1 20 0.05 1 1 0 0 0
......................................................................................................................................................AAAAAAAAACAGGAACCC................................................................................... 18 1 20 0.05 1 1 0 0 0
...................................................................................................................................................AAAAAAAAAAAACTGAAACC.................................................................................... 20 1 20 0.05 1 1 0 0 0
..................................................................................................................................................................................................................TAAAAAAAAAGAACCCAACC..................... 20 2 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................AAAAAGAGAAACCAACACC................... 19 2 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................AAAAAAAAAGAAACCAACACT................... 21 2 20 0.05 1 1 0 0 0
....................................................................................................................................................AAAAAAAAATACAGAAACC.................................................................................... 19 1 20 0.05 1 1 0 0 0
.................................................................................................................................................AAACAGAAAAAAAACAGAAACC.................................................................................... 22 2 20 0.05 1 1 0 0 0
...................................................................................................................................................AAAAAAAAAAAACGGACACCC................................................................................... 21 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................GGACAGAAAAAAAGAAACC......................... 19 2 20 0.05 1 1 0 0 0
...................................................................................................................................................AAAAAAAAAAAACAGGAACCCA.................................................................................. 22 2 20 0.05 1 1 0 0 0
....................................................................................................................................................AAAAAAAAAAACCGAAACC.................................................................................... 19 1 20 0.05 1 1 0 0 0
..................................................................................................................................................AAAAAGCAAAAAACAGAAACC.................................................................................... 21 2 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................AAAGAAAGAAACCAACACC................... 19 2 20 0.05 1 1 0 0 0
.........................................................................................................................................................................................................ACAAAAGGACAAAAAAAAA............................... 19 1 20 0.05 1 1 0 0 0
..................................................................................................................................................AAAACAAAAAAAACAGGAACC.................................................................................... 21 2 20 0.05 1 1 0 0 0
.........................................................................................................................................CATGTCCTAAAAAAAAAAAAA............................................................................................. 21 2 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................GGATAAAAAATAGGAAACC......................... 19 2 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................AAAAAACAGAAACCAACACC................... 20 2 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................AAAAAAAGAAACCAACAC.................... 18 1 20 0.05 1 1 0 0 0
..................................................................................................................................................AAAAAAAAAAAAACGGAACCC.................................................................................... 21 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGACAGACTTGCTTGAGTTCAGGGACTATGACCTCCGTTACTTCTTTCTGCATTCATAGGAATATATACCCTCAGGAGTGCGCTAAATCTTTGATCCGGGGGCTAGCTTTAGTCAAGTGCAAGGGATATTTAATACAGTCCAGTATTTTTTTTTTTTTTGTCTTTGGGAACTCTGGTGTTCACAAGCTTCCGCCGTTTTCATGTTTTCCTATTTTTTTTTCTTTGGTTGAGGATGCTGTTTGCCTGTCTGC
**************************************************((.((..((((.......))))...)).))................(((.((..(((((......................(((((......)))))....................((((......))))..))))).)).)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V055
head
 V106
head
 M058
embryo
 V039
embryo
...............................................................................................................GTCGAGTGCAAGGGATAA.......................................................................................................................... 18 2 3 144.33 433 279 117 24 12 1 0
...............................................................................................................GTCGAGTGCAAGGGATAAT......................................................................................................................... 19 2 1 124.00 124 73 41 7 3 0 0
...............................................................................................................GTCGAGTGCAAGGGATAATCA....................................................................................................................... 21 3 1 120.00 120 49 58 8 5 0 0
................................................................................................................TCGAGTGCAAGGGATAATCA....................................................................................................................... 20 3 4 114.50 458 106 278 21 50 2 1
................................................................................................................TCGAGTGCAAGGGATAAT......................................................................................................................... 18 2 3 79.33 238 152 28 23 33 1 1
...............................................................................................................GTCGAGTGCAAGGGATAATC........................................................................................................................ 20 3 4 65.50 262 115 128 14 2 3 0
..............................................................................................................GGTCGAGTGCAAGGGATAAT......................................................................................................................... 20 3 7 35.86 251 144 94 6 7 0 0
..............................................................................................................GGTCGAGTGCAAGGGATA........................................................................................................................... 18 2 19 33.63 639 429 165 34 7 1 3
...............................................................................................................GTCGAGTGCAAGGGATA........................................................................................................................... 17 1 1 12.00 12 0 0 12 0 0 0
................................................................................................................TCGAGTGCAAGGGATAATT........................................................................................................................ 19 2 1 4.00 4 0 1 1 1 1 0
................................................................................................................TCGAGTGCAAGGGATAA.......................................................................................................................... 17 2 13 3.15 41 0 0 41 0 0 0
...........................................................................................................TTTGGTCGAGTGCAAGGGATA........................................................................................................................... 21 2 1 3.00 3 0 3 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATAATTA....................................................................................................................... 20 2 1 3.00 3 0 2 1 0 0 0
..................................................................................................................GAGTGCAAGGGATAATCA....................................................................................................................... 18 3 20 2.40 48 21 21 6 0 0 0
................................................................................................................TCTAGTGCAAGGGATAATCA....................................................................................................................... 20 3 3 2.33 7 0 7 0 0 0 0
..............................................................................................................GGTCAAGTGCAAGGGATA........................................................................................................................... 18 1 1 2.00 2 0 1 1 0 0 0
...........................................................................................................TTGAGTCGAGTGCAAGGGATA........................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0 0
................................................................................................................TCCAGTGCAAGGGATAATCA....................................................................................................................... 20 3 1 2.00 2 0 2 0 0 0 0
..............................................................................................................GGTCGAGTGCAAGGGATATT......................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................AGTCGAGTGCAAGGGATAATCA....................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATAATTA....................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATATTCA....................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................................GAGTCGAGTGCAAGGGATA........................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................................TTTGAGTCTAGTGCAAGGGATA........................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATATC......................................................................................................................... 18 2 2 1.00 2 0 2 0 0 0 0
...............................................................................................................GTCTAGTGCAAGGGATAATCA....................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................................GATTTGGTCGAGTGCAAGGGATA........................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATATTC........................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GTCAAGTGCAAGGGATAAT......................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................TTGGTCGAGTGCAAGGGATA........................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATAATTAC...................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..................................................................................................GGGGCAACCTTTAGTCATGTGC................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................GGGCAACCTTTAGTCATGTGC................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................GTCCAGTGCAAGGGATAATCA....................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................................TTTGTGTCAAGTGCAAGGGATA........................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..............................................................................................................CGTCGAGTGCAAGGGATA........................................................................................................................... 18 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................................AGTCGAGTGCAAGGGATAATC........................................................................................................................ 21 3 3 1.00 3 0 3 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATA........................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................................ATTTGGTCGAGTGCAAGGGAT............................................................................................................................ 21 3 3 1.00 3 1 1 0 1 0 0
..............................................................................................................TGTCGAGTGCAAGGGATA........................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................TCAAGTGCAAGGGATAATCA....................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0
..............................................................................................................GGTCCAGTGCAAGGGATAAT......................................................................................................................... 20 3 4 0.75 3 2 1 0 0 0 0
................................................................................................................TCTAGTGCAAGGGATAATC........................................................................................................................ 19 3 20 0.75 15 1 12 0 2 0 0
.................................................................................................................CGAGTGCAAGGGATAATCA....................................................................................................................... 19 3 12 0.58 7 1 5 1 0 0 0
.............................................................................................................TGGTCTAGTGCAAGGGATA........................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0
..............................................................................................................AGTCGAGTGCAAGGGATAA.......................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0
...........................................................................................................TTTGGTCCAGTGCAAGGGAT............................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATAATAA....................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATATC......................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
..............................................................................................................AGTCGAGAGCAAGGGATA........................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0
...........................................................................................................GTTCGTCAAGTGCAGGGGATA........................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
...............................................................................................................GTCTAGTGCAAGGGATAA.......................................................................................................................... 18 2 5 0.40 2 1 1 0 0 0 0
.............................................................................................................TGGTCGAGTGCAAGGGATAA.......................................................................................................................... 20 3 10 0.40 4 1 1 0 2 0 0
............................................................................................................TGTGTCGAGTGCAAGGGATA........................................................................................................................... 20 3 8 0.38 3 1 0 1 1 0 0
...........................................................................................................TTTGGTCGAGTGCAAGGGAT............................................................................................................................ 20 2 3 0.33 1 1 0 0 0 0 0
...........................................................................................................TTGGGTCAAGTGCAAGGGAT............................................................................................................................ 20 2 3 0.33 1 0 1 0 0 0 0
...........................................................................................................TTTGGTCGAGTGCAAGGGATAA.......................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0
...............................................................................................................GTCCAGTGCAAGGGATAA.......................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0
.............................................TTCTACACTCATAGGAATA........................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1
................................................................................................................TCGAGTGCAAGGGATAATGA....................................................................................................................... 20 3 8 0.25 2 1 1 0 0 0 0
..............................................................................................................GGTCGAGTGCAAGGGATAATT........................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
..............................................................................................................GGTCAAGTGCAAGGGATAATC........................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0
...............................................................................................................GTCGAGTGCAATGGATAATT........................................................................................................................ 20 3 4 0.25 1 0 1 0 0 0 0
..........................................................................................................TTTGGGTCAAGTGCAAGGGATA........................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0
...........................................................................................................TTGGGTCGAGTGCAAGGGATAT.......................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0
TGGCTGACTTGCTTGAGT......................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1
............................................................................................................TGAGTCGAGTGCAAGGGATAA.......................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
...............................................................................................................GTCTAGTGCAAGGGATAATC........................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATCTT......................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0
..........................................................................................................TTTGAGTCGAGTGCAAGGGATA........................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0
..............................................................................................................GGTCTAGTGCAAGGGATA........................................................................................................................... 18 2 20 0.20 4 0 4 0 0 0 0
..............................................TCTGCGATCATAGGAATA........................................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0
................................................................................................................TCCAGTGCAAGGGATAATC........................................................................................................................ 19 3 5 0.20 1 0 1 0 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATAG.......................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
....................................................................................................................GTGCAAGGGATAATTGAT..................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0
..............................................................................................................GGTCGAGTGCAAGGGATAT.......................................................................................................................... 19 2 12 0.17 2 1 1 0 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATAGTC........................................................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0
............................................................................................................TTGGTCGAGTGCAAGGGAT............................................................................................................................ 19 2 6 0.17 1 1 0 0 0 0 0
..............................................................................................................GGTCAAGTGCAAGGGAAATTA........................................................................................................................ 21 3 6 0.17 1 0 0 1 0 0 0
............................................................................................................TGCGTCGAGTGCAAGGGATA........................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
..............................................................................................................TGTCGAGTGCAAGGGATAA.......................................................................................................................... 19 3 13 0.15 2 0 2 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATAATG........................................................................................................................ 19 3 13 0.15 2 1 1 0 0 0 0
...........................................................................................................TTGGGTCTAGTGCAAGGGATA........................................................................................................................... 21 3 20 0.15 3 1 2 0 0 0 0
................................................................................................................TCGAGTGCAAGGGATATCA........................................................................................................................ 19 3 8 0.13 1 0 1 0 0 0 0
.............................................................................................................TGGTCGAGTGCAAGGGAT............................................................................................................................ 18 2 18 0.11 2 2 0 0 0 0 0
...............................................................................................................GACGAGTGCAAGGGATAAT......................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0
.............................................................................................................TAGTCAAGTGCAAGGGAACG.......................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0 0
...............................................................................................................GTCGAGTGCAAGGGATAAC......................................................................................................................... 19 3 10 0.10 1 0 0 1 0 0 0
................................................................................................................TCTAGTGCAAGGGATAAT......................................................................................................................... 18 2 20 0.10 2 0 1 0 1 0 0
........................................................................................CCTTGATGGGGGGGCTAGC................................................................................................................................................ 19 3 11 0.09 1 0 0 1 0 0 0
...............................................................................................................GTCGTGTGCAAGGGATAAT......................................................................................................................... 19 3 18 0.06 1 0 1 0 0 0 0
...............................................................................................................GTCGAGTACAAGGGATAAT......................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
..................................................................................................................AAGTGCAAGTGGTATTTA....................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0
...............................................................................................................GTCGAGTGCAAGGGATAAA......................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
................................................................................................................TTGAGTGCAAGGGATAATT........................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0
...................................................................................................................AGTGCAAGGGATAATCAC...................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:1870061-1870311 + dan_1724 ACTGTCTGAACGAACTCAAGTCCCTGATACTGGAGGCAATGAAGAAAGACGTAAGTATC--CTTATA---T----ATG-------------------------------------------------------------GG----A---GTCCT-CAC---------------GCGATTTAGAAACTAGGCCC--CCGATCGAAAT--CAGTTCACGTTCCCTATAAATTATGTCA--------------------------------------GGTCAT----AAAAAAAAAAAAAACAGAAACCCTTGAGAC---------CACAAGTGTTC---------------------GA-AGGCGGCAAAAGTACAAA-AGGA-------TAAAAA-----AA-----------A------AGAAAC----CAACTCCTACGACAAACGGACAGAC------------G
droBip1 scf7180000396730:2857176-2857432 + ACTGTCTCAACGAACTCAAGTCCCTGATACTGGAGGCAATGAAAAAAGACGTAAGTATC--CTTGTA---T----ATGAG-----------------------------------------------------------------A---GTCCT-CAC---------------GCGATTTAGAAACTAGGCCC--CCGATCGAAAT--CAGTTCACTTTCCCTATAAATTATGTCA--------------------------------------GGTCAT----AAAAAAAGAAAAGAG--AAACCCTTGAGAC---------CACAAGTGTTT---------------------CA-AGGCGGCAAAAGTACAAA-AGGA-------TAAAAC--------------ATATAACAAAAAAAAAC----CAACTCCTACGACAAACGGACAGAC------------G
droKik1 scf7180000302411:53752-54037 + ACTGCCTCAACGAACTCAAGTCCCTGATCCTGGAGGCCATGAAAAAAGACGTGAGTATATCCTTTTC--------AAGTGTC------------------------------------C--AGA------AGAAAGCAAGG----AGTTTTCCG-CCCCC----------TTTCATATTTAGAAACTAGACCC--TCGATCCAAATCTCAGAACACTTTCCATATAAATTATGTCA--------------------------------------GACCAT----TAAAA--------------ACCCTTGAAAC----------ACAAGTGTCC---------------------AGAGGGCGGCAAAACTACAAACAGGAC------CAACAAAACACACT----GTATATA------AAAAACCCGACAACTCCTACGACATATAGAGAGGGAC---T------G
droFic1 scf7180000453215:83940-84196 + ACTGCCTCAACGAACTGAAGTCCCTGATCCTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTTTC--------GTGAGTC------------------------------------A-GGAA------AGAT---TTCG----AGCTGTCCG-CCC---------------GCGATTTAGAAACTAGGCCC--CCGATCAGTA-------TCACTTTCCCAATAAATTATGTCA--------------------------------------GACCAT----AAAA---------------ACCCTTGAGAT----------ACAAGTGTCC---------------------GA-GGGCGGCAAAAGTACAAA-AGGA-------CAAAAA-----ACTCCATGTATATA------AAAAAC----CAACTCCTACGACACAAGAACGG-C------------A
droEle1 scf7180000491240:924741-924990 - ACTGCCTCAACGAACTGAAGTCCCTTATACTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTGCC--------GTGATTC------------------------------------A-GAGA------AGAA---TAGG----A----------TA---------------GCGATTTAGAAACTAGGCCC--CCGATTCATAT--CGGTTCACTTTCCCTATAAATTATGTCA--------------------------------------GATCAT----AAAAA--------A-----CCCCTTGAGAT----------ACAAGTGTCC---------------------GA-AGGCGGCAAAAGTACAAA-AGGA-------CAAAAA-----ACT------ATATA------AAAAAC----CAACTCCTACGACACACAAACAGAC------------A
droRho1 scf7180000770177:214895-215150 - ACTGCCTCAACGAACTAAAATCCCTAATCCTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTGCC--------GCGATTC------------------------------------A-GACA------AGAA---TAGG----AGTGGTCCG-CCC---------------GCGACTTAGAAACTAGGCC---CCGATCCATAT--CAGTTCACTTTCCTTATAAATTATGTCA--------------------------------------GAGCAT----AAAGA--------A-----CCCCTTGAGAT----------ACAAGTGTCC---------------------GA-GGGCGGCAAATGTACAAA-AGGA-------CAAAAA-----ACT------CTATA------AAAAAC----CAACTCCTACGACACACGAA--GAA------------A
droBia1 scf7180000302291:1975244-1975496 - ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCCATGAAAAAAGACGTAAGTATG--CTCTCC--------AAGAGCG------------------------------------G--AAA------AGAA---AAGG----AGTGGCCCG-CCC---------------GCGATTTAGAAACTAGGCCC--CCGATCCATAT--CGGTTCACTTTCCCCATAAATTATGTCA--------------------------------------GACCAC----AAAA---------------ACCCCAGAGAC----------GCAAGTGCCC---------------------GA-CGGCGGCAAAAGTACAAA-AGGA-------CAAAAA-----ACT------ATATA------AGA-AG----CAACTCCTACGACACTCGAACAGC--------------
droTak1 scf7180000414673:19052-19308 + ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCTATGAAAAAAGACGTAAGTATC--CCCGCC--------ATGAGTC------------------------------------A-GGGA------AGAA---AAGG----AGTTGTCCG-CCC---------------GCGATTTAGAAACTAGGTTC--CCGATCCATAT--CAGTTCACTTTCATTATAAATTATGTCA--------------------------------------GACCAT----AAAA---------------ACCCTTGAGAC----------ACAAGTGTCC---------------------AG-GGGCGGCAAAACTACAAA-AGGA-------CAAAAA-----ACT------ATATA------AAAAAC----CAACTCCTACGACACTCGAACAGCA------------A
droEug1 scf7180000409275:79642-79926 + ACTGCCTGAACGAACTGAAGTCCCTTATCCTGGAGGCCATGAAAAAAGACGTAAGTATC--CTCTCC--------T---CTC------------------------------------AAAAGA-AGAAAAGAA---AAGG----AGTTGCCCG-CCC---------------GCGATTTAGAAACTAGGCCC--CCGATCCATAT--CACTTCACTTTCCCTATAAATTATGTCA--------------------------------------GACCAT----AAAAA----AAAGACCAAAACCCTTGAGAC----------ACAAGTGTCC---------------------AAGAGGCGGCGAAACTACAAA-AGGATAAAACACAGAAA-----ACT------ATATA------AAAAAT----CAACTCCTACGACACACGAACGGCTAAGAAG------A
dm3 chr2R:4118894-4119153 - ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGCGTC------------------------------------A-AAGC------AGAA---AAGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCCTTT--TGGTTCACTTTC-TTATAAATAATGTTA--------------------------------------GTCCAC----AAAAAAA------A-----ACCTTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAAAAA-----AAT------GTATA------AAAAAC----GAACTCCTACGACACAAGAACTGAA------------A
droSim2 2r:4936157-4936414 - dsi_27424 ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGAGTC------------------------------------A-AAGC------AGAA---AAGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCCTAT--CGGTTCACTCTC-TTATAAATTATGTCA--------------------------------------GCCCAT----AAAAA--------A-----ACCCTTGAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAAAAA-----ACT------GTATA------AAAAAC----GAACTCCTACGACACAAGAACTGAA------------A
droSec2 scaffold_1:1765775-1766032 - ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGAGTC------------------------------------A-AAGC------AGAA---AAGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCCTAT--CGACTCACTTTC-TTATAAATTATGTCA--------------------------------------GTCCAT----AAAAA--------A-----ACCCTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAAAAA-----ACT------GTATA------AAAAAC----GAACTCCTACGACACAAGAACTGAA------------A
droYak3 2L:16770633-16770895 - ACTGCCTCAACGAACTAAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGATTC------------------------------------A-AAACAG----GGAA---AGGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCGTAT--CGGTTGACTTTC-TTATAGATTATATCA--------------------------------------GCCCAT----AAAAA--------------ACCCTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAAAACTACAAA-AGAA-------CAAAAAAAGAAACA------GTATA------AAA-AG----CAACTCCTACGACACAAGAACTAAA------------A
droEre2 scaffold_4929:18514204-18514459 + ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGAGTC------------------------------------A-AAGC------AGAA---GGCG----AGCAGTCCG-CCC---------------GCGAATTAGAAACTAGCT----CCTATCCGTAT--CTGTTGACTTTC-TTATAAATTATGTCA--------------------------------------GTCCAT----AAAAA--------------ACCCTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAAAACTACAAA-AGAA-------CAAAAA-----ACT------ATATA------AAAAAC----CAACTCCTACGACACAAGAACTGAA------------A
dp5 3:2107667-2107947 - ATTGCCTGAACGAGCTGAAATCCCTCATACTGGAGGCCATGAAGAAAGACGTAAGTATTACCC-GTTAAATCGACTTGACCC------------------------------------A-AAG-------AGAA---ATGAACAAAGTGCTGAG-GCA---------------GTGATTTAGAAACTAGGGCCCACCGATCAATAT--CAGTTCACTTTCCCCATAAATTATGTCA--------------------------------------GGTCCCACATAAAAA----AAAAACC--CCCCCTTGAGACACACACACACTCAAGTGTCC---------------------GG-CGGCGGCAAGAGCACAAA-AGGATCA--CACAAAAA-----ATG------GGATA--------AAAC----GAACTCCTTC----------------------------
droPer2 scaffold_2:2278130-2278411 - ATTGCCTGAACGAGCTGAAATCCCTCATACTGGAGGCCATGAAGAAAGACGTAAGTATTACCC-GTTAAATCGACTTGACCC------------------------------------A-AAG-------AGAA---ATGAACAAAGTGCTGAG-GCA---------------GTGATTTAGAAACTAGGGCCCACCGATCAATAT--CAGTTCACTTTCCCCATAAATTATGTCA--------------------------------------GGTCCCACATTACAAA---AAAAAAC--CCCCCTTGAGACACACACACACTCAAGTGTCC---------------------GG-CGGCGGCAAGAGCACAAA-AGGATCA--CACAAAAA-----ATG------GGATA--------AAAC----GAACTCCTTT----------------------------
droWil2 scf2_1100000004514:484120-484393 - ATTGTCTCAATGAGCTAAAATCTCTGATATTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTTG------------ACCC---------AGAAACGAAAAAACGAA----------A-ACGA------AAAA---AATG----ACATCCCCG-CCC---------------TTTATTTAGAGACTATAGAC--T-----------------------------------------AAAAACCATAAATTTCATAAAAACACAAAACTTGTAAGAGAAT----GAAAA--------------ACTCTT----T----------TCAAGTGCATGTGCGTGTGTGTCATGGGATTGG-GTTCGGCAAAAGTACAAA-AGGG-------TCCT----------------------------AACAG----CAACTCCTACAACGA-TGAGGAG-A------------G
droVir3 scaffold_12875:9127562-9127820 - dvi_5817 ACTGTTTGAACGAGCTCAAATCGCTGATCCTGGAGGCAATGAAGAAAGACGTAAGTATC--CATAAG--------TGGAGT-------------------------------------A-GGAA------AGAA---GCAG----AGA--GGCGTCCA---------------CTGATTTAGAAACTATGTAC--AAGA------T--TTGTTCACTCTCCTTATAAATGGTGTCATAAAACACATAAATTTCTGAA----------------------------------------------ACTCAGAAATT----------TCAAGTGTGTCT-------------------GGGCGTCGGCAAAAGTACAAA-AGGA-------TACA-------------------------------------CGACTCCTACAACAGACGCACAGACAAAAAGCAAAAAA
droMoj3 scaffold_6496:18032060-18032324 + ACTGCTTGAACGAGCTCAAATCGCTGATCCTGGAGGCAATGAAGAAAGACGTAAGTATC--CTTGGG----------AAATCACATAAAAAGAAAA-AATATAAAAATC---------C-AAAT----------------------ATGGGGCG-A-AAC----------TTACTGATTTAGAAACTATGCTC--------GAGAT--TGGTGCACTTTCCTTATAAATGGTGTCATAAAACCCATAAATATCAGAA----------------------------------------------ACTCGAAAATT----------TCAAGTGTCT---------------------GG-CGTCGGCAAAAGTACAAA-AGGA-------TACAA-------------------------------------GACTCCTACAACAGACAGACGCAC------------A
droGri2 scaffold_15245:2451420-2451704 - ACTGTTTAAATGAGCTCAAATCGCTTATCCTGGAAGCGATGAAGAAAGACGTAAGTATC--CTTTAA------------AAA---------AAAAACAATAAAAAGAAGCAATCAGACA---GA------AAAA---AAGG----GAGAGCCAG-CCCCCAAAAGCCAAAGCAGTGATTTAGAAACTAGGTTC--GCGA------T--AGGCTCACTTTCCTTATAAATGGTGTCATAAAACACATAAATTTGAGAAACT---------------------------------------------CGAAAATGT----------TCAAGTGTCT---------------------GG-CGTCGGCGAAAGTACAAA-AGGA-------TA-------------------TACA------A----------GACTCCTACGAGAGACGGACAGAC------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACTGTCTGAACGAACTCAAGTCCCTGATACTGGAGGCAATGAAGAAAGACGTAAGTATC--CTTATA---T----ATG-------------------------------------------------------------GG----A---GTCCT-CAC---------------GCGATTTAGAAACTAGGCCC--CCGATCGAAAT--CAGTTCACGTTCCCTATAAATTATGTCA--------------------------------------GGTCAT----AAAAAAAAAAAAAACAGAAACCCTTGAGAC---------CACAAGTGTTC---------------------GA-AGGCGGCAAAAGTACAAA-AGGA-------TAAAAA-----AA-----------A------AGAAAC----CAACTCCTACGACAAACGGACAGAC------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................AAAAA-----AA-----------A------AGAAAC----CAAC..................................1840.251010000
...............................................................................................................................................................................................................................................................................................AAAAAAAAAAACAGAAACC.................................................................................................................................................................1990.222020000
droBip1
ACTGTCTCAACGAACTCAAGTCCCTGATACTGGAGGCAATGAAAAAAGACGTAAGTATC--CTTGTA---T----ATGAG-----------------------------------------------------------------A---GTCCT-CAC---------------GCGATTTAGAAACTAGGCCC--CCGATCGAAAT--CAGTTCACTTTCCCTATAAATTATGTCA--------------------------------------GGTCAT----AAAAAAAGAAAAGAG--AAACCCTTGAGAC---------CACAAGTGTTT---------------------CA-AGGCGGCAAAAGTACAAA-AGGA-------TAAAAC--------------ATATAACAAAAAAAAAC----CAACTCCTACGACAAACGGACAGAC------------GSizeHit CountTotal NormTotal
No Reads
droKik1
ACTGCCTCAACGAACTCAAGTCCCTGATCCTGGAGGCCATGAAAAAAGACGTGAGTATATCCTTTTC--------AAGTGTC------------------------------------C--AGA------AGAAAGCAAGG----AGTTTTCCG-CCCCC----------TTTCATATTTAGAAACTAGACCC--TCGATCCAAATCTCAGAACACTTTCCATATAAATTATGTCA--------------------------------------GACCAT----TAAAA--------------ACCCTTGAAAC----------ACAAGTGTCC---------------------AGAGGGCGGCAAAACTACAAACAGGAC------CAACAAAACACACT----GTATATA------AAAAACCCGACAACTCCTACGACATATAGAGAGGGAC---T------GSizeHit CountTotal NormTotal
No Reads
droFic1
ACTGCCTCAACGAACTGAAGTCCCTGATCCTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTTTC--------GTGAGTC------------------------------------A-GGAA------AGAT---TTCG----AGCTGTCCG-CCC---------------GCGATTTAGAAACTAGGCCC--CCGATCAGTA-------TCACTTTCCCAATAAATTATGTCA--------------------------------------GACCAT----AAAA---------------ACCCTTGAGAT----------ACAAGTGTCC---------------------GA-GGGCGGCAAAAGTACAAA-AGGA-------CAAAAA-----ACTCCATGTATATA------AAAAAC----CAACTCCTACGACACAAGAACGG-C------------ASizeHit CountTotal NormTotal
No Reads
droEle1
ACTGCCTCAACGAACTGAAGTCCCTTATACTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTGCC--------GTGATTC------------------------------------A-GAGA------AGAA---TAGG----A----------TA---------------GCGATTTAGAAACTAGGCCC--CCGATTCATAT--CGGTTCACTTTCCCTATAAATTATGTCA--------------------------------------GATCAT----AAAAA--------A-----CCCCTTGAGAT----------ACAAGTGTCC---------------------GA-AGGCGGCAAAAGTACAAA-AGGA-------CAAAAA-----ACT------ATATA------AAAAAC----CAACTCCTACGACACACAAACAGAC------------ASizeHit CountTotal NormTotal
No Reads
droRho1
ACTGCCTCAACGAACTAAAATCCCTAATCCTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTGCC--------GCGATTC------------------------------------A-GACA------AGAA---TAGG----AGTGGTCCG-CCC---------------GCGACTTAGAAACTAGGCC---CCGATCCATAT--CAGTTCACTTTCCTTATAAATTATGTCA--------------------------------------GAGCAT----AAAGA--------A-----CCCCTTGAGAT----------ACAAGTGTCC---------------------GA-GGGCGGCAAATGTACAAA-AGGA-------CAAAAA-----ACT------CTATA------AAAAAC----CAACTCCTACGACACACGAA--GAA------------ASizeHit CountTotal NormTotal
No Reads
droBia1
ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCCATGAAAAAAGACGTAAGTATG--CTCTCC--------AAGAGCG------------------------------------G--AAA------AGAA---AAGG----AGTGGCCCG-CCC---------------GCGATTTAGAAACTAGGCCC--CCGATCCATAT--CGGTTCACTTTCCCCATAAATTATGTCA--------------------------------------GACCAC----AAAA---------------ACCCCAGAGAC----------GCAAGTGCCC---------------------GA-CGGCGGCAAAAGTACAAA-AGGA-------CAAAAA-----ACT------ATATA------AGA-AG----CAACTCCTACGACACTCGAACAGC--------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCTATGAAAAAAGACGTAAGTATC--CCCGCC--------ATGAGTC------------------------------------A-GGGA------AGAA---AAGG----AGTTGTCCG-CCC---------------GCGATTTAGAAACTAGGTTC--CCGATCCATAT--CAGTTCACTTTCATTATAAATTATGTCA--------------------------------------GACCAT----AAAA---------------ACCCTTGAGAC----------ACAAGTGTCC---------------------AG-GGGCGGCAAAACTACAAA-AGGA-------CAAAAA-----ACT------ATATA------AAAAAC----CAACTCCTACGACACTCGAACAGCA------------ASizeHit CountTotal NormTotal
No Reads
droEug1
ACTGCCTGAACGAACTGAAGTCCCTTATCCTGGAGGCCATGAAAAAAGACGTAAGTATC--CTCTCC--------T---CTC------------------------------------AAAAGA-AGAAAAGAA---AAGG----AGTTGCCCG-CCC---------------GCGATTTAGAAACTAGGCCC--CCGATCCATAT--CACTTCACTTTCCCTATAAATTATGTCA--------------------------------------GACCAT----AAAAA----AAAGACCAAAACCCTTGAGAC----------ACAAGTGTCC---------------------AAGAGGCGGCGAAACTACAAA-AGGATAAAACACAGAAA-----ACT------ATATA------AAAAAT----CAACTCCTACGACACACGAACGGCTAAGAAG------ASizeHit CountTotal NormTotal
No Reads
dm3
ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGCGTC------------------------------------A-AAGC------AGAA---AAGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCCTTT--TGGTTCACTTTC-TTATAAATAATGTTA--------------------------------------GTCCAC----AAAAAAA------A-----ACCTTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAAAAA-----AAT------GTATA------AAAAAC----GAACTCCTACGACACAAGAACTGAA------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................TAAGGC----------ACAAGTGTCC---------------------GAAGGGCGG.......................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAAGGC----------ACAAGTGTCC---------------------GAAGGGC.........................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGC......................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTATCCTGGAGGCGATGAAAAAAGACG................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................TATC--TTGCCC--------GAGCGTC------------------------------------A-AAGC------AGA..............................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TA------AAAAAC----GAACTCCTACGACACAAG....................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TATCCTGGAGGCGATGAAAAAAGACG................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATA------AAAAAC----GAACTCCTACGA..........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTAAGGC----------ACAAGTGTCC---------------------GAAGGGC.........................................................................................................2412.0020000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAC----GAACTCCTACGACACAAGAACT................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TC------------------------------------A-AAGC------AGAA---AAGG----AGCGGT............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AAGGGCGGCAGAACTACAAA-AGA.......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATCCTGGAGGCGATGAAAAAAGACT................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAC----GAACTCCTACGAC.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CAGAACTACAAA-AGAA-------CAAAAA-----AAA------T..........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TA------AAAAAC----GAACTCCTACGACACAAGAAC.................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AACTACAAA-AGAA-------CAAAAA-----AAC------T..........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTATCCTGGAGGCGATGAAAAAAGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CAACGAACTGAAGTCCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTGCCTCAACGAACTGAAGTCCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AA-----AAT------GTATA------AAAAAC----GAACTCCTACGACA........................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TA------AAAAAC----GAACTCCTACGACACAA.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTATC--TTGCCC--------GAGCGTC------------------------------------A-AA.........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAAAAGACGTAAGTATC--TTG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTATC--TTGCCC--------GAGCGTC------------------------------------A-AAGC------AGA..............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAA............................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AC----GAACTCCTACGACACAAGA...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AGGGCGGCAGAACTACAAA-AGA.......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TGTTA--------------------------------------GTCCAC----AAAAAAA------A-----ACCTTT..............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TAATGTTA--------------------------------------GTCCAC----AAAAAAA------A-----ACCT................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGA.......................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................................................................................GTCC---------------------GAAGGGCGGCAGAACTACAAA-A.........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AACGAACTGAAGTCCCTTATCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TCC---------------------GAAGGGCGGCAGAACTACAAA-AGA.......................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................TCC---------------------GAAGGGCGGCAGAACTACAAA-A.........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TC--TTGCCC--------GAGCGTC------------------------------------A-AAGC------AGAA---AAGG----..................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................C------AGAA---AAGG----AGCGGTCCG-CCC---------------......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCCTCAACGAACTGAAGTCCCTTATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATCCTGGAGGCGATGAAAAAAGACG................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGGAGGCGATGAAAAAAGACGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GCCC--------GAGCGTC------------------------------------A-AAGC------AGAA---AAGG----AGC...............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTGCCTCAACGAACTGAAGTCCCTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AACTACAAA-AGAA-------CAAAAA-----AGC------T..........................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGAGTC------------------------------------A-AAGC------AGAA---AAGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCCTAT--CGGTTCACTCTC-TTATAAATTATGTCA--------------------------------------GCCCAT----AAAAA--------A-----ACCCTTGAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAAAAA-----ACT------GTATA------AAAAAC----GAACTCCTACGACACAAGAACTGAA------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.CTGCCTCAACGAACTGAAGTCCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GGCAGAACTACAAA-AGAA-------CAAAAC-----....................................................................2411.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................C---------------------GAAGGGCGGCAGAACTAC..............................................................................................1911.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................AGGGCGGCAGAACTACAAA-AGAA-------CA.............................................................................2511.00100000000100000000
..TGCCTCAACGAACTGAAGTCCCTTATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
.......................................................................................................................................................................................................TCCCTAT--CGGTTCACTCTC-TTATAAA...............................................................................................................................................................................................................................................2611.00100000000100000000
.........................TATCCTGGAGGCGATGAAAAAAGACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGAGTC------------------------------------A-AAGC------AGAA---AAGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCCTAT--CGACTCACTTTC-TTATAAATTATGTCA--------------------------------------GTCCAT----AAAAA--------A-----ACCCTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAGAACTACAAA-AGAA-------CAAAAA-----ACT------GTATA------AAAAAC----GAACTCCTACGACACAAGAACTGAA------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACTGCCTCAACGAACTAAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGATTC------------------------------------A-AAACAG----GGAA---AGGG----AGCGGTCCG-CCC---------------GCGAATTAGAAACTAG-CCC--CCGATCCGTAT--CGGTTGACTTTC-TTATAGATTATATCA--------------------------------------GCCCAT----AAAAA--------------ACCCTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAAAACTACAAA-AGAA-------CAAAAAAAGAAACA------GTATA------AAA-AG----CAACTCCTACGACACAAGAACTAAA------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACGTAAGTATC--TTGCCC--------GAGAGTC------------------------------------A-AAGC------AGAA---GGCG----AGCAGTCCG-CCC---------------GCGAATTAGAAACTAGCT----CCTATCCGTAT--CTGTTGACTTTC-TTATAAATTATGTCA--------------------------------------GTCCAT----AAAAA--------------ACCCTTAAGGC----------ACAAGTGTCC---------------------GAAGGGCGGCAAAACTACAAA-AGAA-------CAAAAA-----ACT------ATATA------AAAAAC----CAACTCCTACGACACAAGAACTGAA------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
ATTGCCTGAACGAGCTGAAATCCCTCATACTGGAGGCCATGAAGAAAGACGTAAGTATTACCC-GTTAAATCGACTTGACCC------------------------------------A-AAG-------AGAA---ATGAACAAAGTGCTGAG-GCA---------------GTGATTTAGAAACTAGGGCCCACCGATCAATAT--CAGTTCACTTTCCCCATAAATTATGTCA--------------------------------------GGTCCCACATAAAAA----AAAAACC--CCCCCTTGAGACACACACACACTCAAGTGTCC---------------------GG-CGGCGGCAAGAGCACAAA-AGGATCA--CACAAAAA-----ATG------GGATA--------AAAC----GAACTCCTTC----------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................ACCC------------------------------------A-AAG-------AGAA---ATGAACAAA.................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
ATTGCCTGAACGAGCTGAAATCCCTCATACTGGAGGCCATGAAGAAAGACGTAAGTATTACCC-GTTAAATCGACTTGACCC------------------------------------A-AAG-------AGAA---ATGAACAAAGTGCTGAG-GCA---------------GTGATTTAGAAACTAGGGCCCACCGATCAATAT--CAGTTCACTTTCCCCATAAATTATGTCA--------------------------------------GGTCCCACATTACAAA---AAAAAAC--CCCCCTTGAGACACACACACACTCAAGTGTCC---------------------GG-CGGCGGCAAGAGCACAAA-AGGATCA--CACAAAAA-----ATG------GGATA--------AAAC----GAACTCCTTT----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATTGTCTCAATGAGCTAAAATCTCTGATATTGGAGGCCATGAAAAAAGACGTAAGTATC--CTTTG------------ACCC---------AGAAACGAAAAAACGAA----------A-ACGA------AAAA---AATG----ACATCCCCG-CCC---------------TTTATTTAGAGACTATAGAC--T-----------------------------------------AAAAACCATAAATTTCATAAAAACACAAAACTTGTAAGAGAAT----GAAAA--------------ACTCTT----T----------TCAAGTGCATGTGCGTGTGTGTCATGGGATTGG-GTTCGGCAAAAGTACAAA-AGGG-------TCCT----------------------------AACAG----CAACTCCTACAACGA-TGAGGAG-A------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACTGTTTGAACGAGCTCAAATCGCTGATCCTGGAGGCAATGAAGAAAGACGTAAGTATC--CATAAG--------TGGAGT-------------------------------------A-GGAA------AGAA---GCAG----AGA--GGCGTCCA---------------CTGATTTAGAAACTATGTAC--AAGA------T--TTGTTCACTCTCCTTATAAATGGTGTCATAAAACACATAAATTTCTGAA----------------------------------------------ACTCAGAAATT----------TCAAGTGTGTCT-------------------GGGCGTCGGCAAAAGTACAAA-AGGA-------TACA-------------------------------------CGACTCCTACAACAGACGCACAGACAAAAAGCAAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................CTGATCCTGGAGGCAATGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
ACTGCTTGAACGAGCTCAAATCGCTGATCCTGGAGGCAATGAAGAAAGACGTAAGTATC--CTTGGG----------AAATCACATAAAAAGAAAA-AATATAAAAATC---------C-AAAT----------------------ATGGGGCG-A-AAC----------TTACTGATTTAGAAACTATGCTC--------GAGAT--TGGTGCACTTTCCTTATAAATGGTGTCATAAAACCCATAAATATCAGAA----------------------------------------------ACTCGAAAATT----------TCAAGTGTCT---------------------GG-CGTCGGCAAAAGTACAAA-AGGA-------TACAA-------------------------------------GACTCCTACAACAGACAGACGCAC------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACTGTTTAAATGAGCTCAAATCGCTTATCCTGGAAGCGATGAAGAAAGACGTAAGTATC--CTTTAA------------AAA---------AAAAACAATAAAAAGAAGCAATCAGACA---GA------AAAA---AAGG----GAGAGCCAG-CCCCCAAAAGCCAAAGCAGTGATTTAGAAACTAGGTTC--GCGA------T--AGGCTCACTTTCCTTATAAATGGTGTCATAAAACACATAAATTTGAGAAACT---------------------------------------------CGAAAATGT----------TCAAGTGTCT---------------------GG-CGTCGGCGAAAGTACAAA-AGGA-------TA-------------------TACA------A----------GACTCCTACGAGAGACGGACAGAC------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:54 AM