dan_1700

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+
(TA)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGTCGTTTCATTCAAGTGTCCAACGTTTGTCGGAGCGGTCGCACAGAACGGAATAGTCGGACGACGACGACGGTTCGCACAGTTTTCCGCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCTCTCCTCCACCGCAGTAGTGGTATATATATATATATATATATATATATATATATCTGGTTCGGCTGCGTTCGTTCGTTTAGGCTCTTCCCGAACAGGCGGCGGCGGCGGCGGGTAACCCCGTTGGACATCC ************************************************.......(((((((..(((.(((((.((.(((......((....))((.(((.((.((....)).)).))))).....(((((....)))))((((((((((((((....)))))))))))))))))))..))))))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M044 female body	M058 embryo	V055 head	V039 embryo
........................................GCACAGAACGGAATAGTCGGACGACGAC.......................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
.........................................CACAGAACGGAATAGTCGGA..............................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
....................................GGTAGCACAGAACGGAATAGTCG................................................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
..............................................AACGGAATAGTCGGACGACG.........................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
....................................GGTCGCACAGAACGGAATAGTCG................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
................................GAGCGGTCGCACAGAACGGAAT.....................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..............................CGGAGCGGTCGCACAGAACGG........................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
...............................................ACGGAATAGTCGGACGACGACGAC....................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................CGGCGGCCGCGGCGAGTAAC..............	20	2	1	1.00	1	0	0	0	1	0
...........................................CAGAACGGAATAGTCGGACG............................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................CGCGGCGGGTAACGTCGTT........	19	3	7	0.14	1	1	0	0	0	0
.......................................................................................................................................................................................CTACGTTCGTTCGCTTACG.................................................	19	3	7	0.14	1	0	0	0	0	1
........................................................................................................................................................................................TGCGTCCGTTCGTTTTGCCT...............................................	20	3	8	0.13	1	0	1	0	0	0
.............................................................CGACGGCGAGGTTTCGCAC...........................................................................................................................................................................	19	3	9	0.11	1	0	0	0	1	0
........................................................................................................................TGTCCTCCACAGCGGTAGT................................................................................................................	19	3	10	0.10	1	0	0	0	0	1
....................................................................................................GCAGCAGCAGCAGCAGCAGCT..................................................................................................................................	21	0	20	0.10	2	0	0	2	0	0
.......................................................................................................................................................................................................................................GGTAACCCCATTGGTCCTC.	19	3	13	0.08	1	0	1	0	0	0
..............................................................................................GCAGTAGCAGCAGCAGCAGC.........................................................................................................................................	20	0	20	0.05	1	1	0	0	0	0
........................................................................................GCAGTAGCAGTAGCAGCAGC...............................................................................................................................................	20	0	20	0.05	1	0	0	1	0	0
..............................................................................................GCAGTAGCAGCAGCAGCAGCAGC......................................................................................................................................	23	0	20	0.05	1	0	0	1	0	0

GCAGCAAAGTAAGTTCACAGGTTGCAAACAGCCTCGCCAGCGTGTCTTGCCTTATCAGCCTGCTGCTGCTGCCAAGCGTGTCAAAAGGCGTCATCGTCATCGTCGTCGTCGTCGTCGTCGAGAGGAGGTGGCGTCATCACCATATATATATATATATATATATATATATATATAGACCAAGCCGACGCAAGCAAGCAAATCCGAGAAGGGCTTGTCCGCCGCCGCCGCCGCCCATTGGGGCAACCTGTAGG ************************************************.......(((((((..(((.(((((.((.(((......((....))((.(((.((.((....)).)).))))).....(((((....)))))((((((((((((((....)))))))))))))))))))..))))))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M044 female body	V055 head	V105 male body
...GCAAAGTAAGTTGACAGG......................................................................................................................................................................................................................................	18	1	1	1.00	1	0	1	0	0
.................................................................................................................................................................................CAAGCCGACGCAGGAACGCAAA....................................................	22	3	1	1.00	1	0	1	0	0
...............................................................TGCTGCTGCCAAGCGTGTCAA.......................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................GCCGCCGCCGCCCATTGGGGCAACCTG....	27	0	1	1.00	1	1	0	0	0
..........................................................................................................CGTCGTCGTCGTCGAGAGGAG............................................................................................................................	21	0	2	1.00	2	2	0	0	0
.........................................................................................................TCGTCGTCGTCGTCGAGAGGAG............................................................................................................................	22	0	2	1.00	2	2	0	0	0
..............................................................................................................................................................................GACCGAGCCGACACAGGCAAG........................................................	21	3	2	0.50	1	0	1	0	0
...............................................................................................................TCGTCCTCGAGAGGAGGAGGTG......................................................................................................................	22	3	3	0.33	1	0	0	1	0
......................................................................................................TCGTCGTCGTCGTCGTCGAGAG...............................................................................................................................	22	0	3	0.33	1	1	0	0	0
......................................................................................................TCGTCGTCGTCGTCGTCGATAG...............................................................................................................................	22	1	15	0.07	1	1	0	0	0
...GAAAAGTAAGTTTACAGG......................................................................................................................................................................................................................................	18	2	18	0.06	1	0	0	0	1
....CGAAGTAATTTCACAGG......................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0
.................................................................................................................................................................................CAAGCCGACGCAGGAACGC.......................................................	19	3	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:952409-952659 +	dan_1700	CGTCGTTTCATTCAAGTGTCCAACGTTTGTCGGAGCGGTCGCAC--AGAACGGAATAGTCGGACGACGACGACGGTTCGCACA------GTTTTCCGCAGTAGCAGTAGCAGCAGCAGCAGCAGC------AGCT---------------CTC----------------------CTCCACCGCAGTAGT--GGTATA-TATATATATATATATATATATATATAT--ATC------------------TGGTTCGGCTGCGTTCGTTCGTTTAGG------------------------------------CTCTTCCCGAACAGG----------CGG------CG-------GCG----------GCGGCGGGTAACCCCGTTGGACATC----C
droBip1	scf7180000396730:1961374-1961559 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGTCGGAGCGGTCGCAC--AGAACGGAATAGTCGG---------ACGGTTCGCACA------GTTTTCCGCA--------------------------------AGCT---------------CTACA---------------------CACACCGTATA---------------------GTGTATATGTACATATAT--CTC------------------TGGTTCGTCGGC-TTCGTTCG-TTAGG------------------------------------CTCTTCCCGAACAGG-------------------CG-------GCGG------------------GCAACCGTTGGACATC----C
droKik1	scf7180000302476:84094-84294 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCA----TACAACGG--TACTTCG---------ACGGTTCGCA-A------TTCTCTCTCA--------------------------------CGCC---------------CCCTC--------GTTC------------------------------------------------------------------------GCTTGTTCTCCGGTGCTGCT-----------CTG-----CTCTCTCTCGGT--C--GCTCGAGCCTGAAGGGAATACGGGGGAGGAGG-------------------AG-AG----TCGGAGAGGTCGCCAGTGCATACGCACCGTGAGAAAAC----C
droFic1	scf7180000453773:188771-188833 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491214:2698939-2699115 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACGGTTTGCC-A------GTTTTTCGCT--------------------------------CGCT---------------CTCTC------------------------------------------------------------------------TCTCTCGGCCGCTCTTGCT----------------------CTCTTACTCT----------------------CGCC---GTGTACTGTTAGCAAA-AGG-------------------CT-------CCCGAAAAATAAGG----------AACCGTTAGTAAAAGCCCC
droRho1	scf7180000779263:308610-308782 -		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACGGTTTGCC-A------GTTTTTCGCT--------------------------------CGCT---------------CTCTCT----------------------------------------------------------------------------CGTCCGCTCTTGCT----------------------CTCTTACTCT----------------------CTCC---GTGTACTGTTAGCAAA-AGG-------------------CT-------CCCGAAAAATAAGG----------AACCGTTAGTAAAAGCCCC
droBia1	scf7180000301754:1037815-1038031 -		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACGGTTGGCAGATTCAGATT----------------------------------------CGCT---------------CTCCGGGCTGCTCTCG---CCCACT---------------------------------------------------CTCTCTCGCGCGCTGTGCCA----------------------CTCTT-------------------GCCTCTCT-------GTGTACTGTTAGCAAA-AGGCATAGAGCAACGGCTCCGGCT-------GCCGAAAAGCAAGGAGCTTGC-GATACCGTTGGCCAAG----C
droTak1	scf7180000415138:14584-14646 -		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409462:1253161-1253386 -		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTAGCGCT--------------------------------CGCT---------------CTCTCGT---------------------------------------------------------------------------TGCCCGCTCTTGCTCTCCAGCTCTCCT-----------AT------CTCTCTCTCG--GTGTCGTTTT-------GCGGACTGTTAGCAAGGAGG-------------------CGCAATCGTATAGAAAAATAAGGAGCTAGCAATAACCGTTAGTAAAAGC--C
dm3	chr2R:7254208-7254410 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCTCT-------------CCCTCT---------------------------------------------------CTCTC------------------TCGTTAGCCCGCGCTCTCTCC----------------TGCT-----------------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCAAAG----C
droSim2	2r:7964468-7964678 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCTTCCGCTCTCT--------------------------------------------------------------------------CTTGCTCTCTCGCTCGCCCGCGCTCTCTCC----------------TGCT-----------------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCAAAG----C
droSec2	scaffold_1:4810823-4811035 +		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCTTCCGCTCTCTC------------------------------------------------------------------------TCTTGCTCTCTCGTTCGCCCGCGCTCTCTCC----------------TGCT-----------------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCAAAG----C
droYak3	2R:9706001-9706225 -		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGGT---------------CTCCCCTCCGCTCTCTCA-CTCACT---------------------------------------------------CTCTC------------------TCGTTCGCGCGCGCTCTCTCC----------------TGCTGTGGCTCTCT-------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGGAGCTTGCCGAAACCGTTAGCAAAG----C
droEre2	scaffold_4845:18539899-18540129 -		CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCTTCCGCTCTCTCTC------TCTCTGT----------C---------ACA---------------------CACTC------------------TCGTTTGCCCGCGCTCTCTCC----------------TGCTGTGGCTCTCT-------GTGTACTGTTAGCAAGGAGG-------------------AG-------ACCGAAAAATAAGGAGCTTGCCGAAACCGTTAGCAAAG----C
dp5	3:13531853-13531913 -		CATCGTCTCATTCAAGTGTCCAACTTTTGTCGAAGCGGTCA--TACAAAACGG--CAGTCGG---------ACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:5426029-5426135 +		----------------------------GCAGCAGCAGCAGCAGCAGCAGCAG--CAGCAGC---------AAGGA---------------TGTCCTCG--------------------------------CACG---------------TCAC---------------------GTACACCGAAAAAAA--TATTTATTATACATATATATGTATGTACATGTGT--ATC------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004943:11239119-11239244 -		TTG----------------------TATGCAGCAGCAGCAGCAGCAGCAGCAG--CAGCAGC---C-CCAGCAGTCTAGCAGCCACAGAAA-------------------------------------------------------------C----------------------CACCGCTACAACAATGATATAAA-TA-ATATATATACCTATGTATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATACTCAACTCGG----C
droVir3	scaffold_12963:15189574-15189660 +		GATCTTTTACCAATATTGTGCAGCGC----------------ACACGGCACGA--CGGCTG--------------ATCGCAGA------G----------CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:5621631-5621757 -		CAGCAGCGACAGCAATCGC-----------------------ATCC----------------------------------------------ATCCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTACAACT---ACAAAT------ACAC---------------------CTACACATACATAGG--TATATA-TATATATATATATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATAT----C
droGri2	scaffold_14906:6114319-6114413 -		G----------------------------CAGCAGCAGCAGCAGCAGCAGCAG--CAGCAG------------------------------------------------------------------------CCCTTCCCAGCCAACACACAC---------------------ACACACA----------T---------ATATATATACACATGTACATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATTTAG----T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CGTCGTTTCATTCAAGTGTCCAACGTTTGTCGGAGCGGTCGCAC--AGAACGGAATAGTCGGACGACGACGACGGTTCGCACA------GTTTTCCGCAGTAGCAGTAGCAGCAGCAGCAGCAGC------AGCT---------------CTC----------------------CTCCACCGCAGTAGT--GGTATA-TATATATATATATATATATATATATAT--ATC------------------TGGTTCGGCTGCGTTCGTTCGTTTAGG------------------------------------CTCTTCCCGAACAGG----------CGG------CG-------GCG----------GCGGCGGGTAACCCCGTTGGACATC----C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................GCAC--AGAACGGAATAGTCGGACGACGAC........................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
.........................................CAC--AGAACGGAATAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................................................AACGGAATAGTCGGACGACG..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................................GGTCGCAC--AGAACGGAATAGTCG.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................GAGCGGTCGCAC--AGAACGGAAT......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............................CGGAGCGGTCGCAC--AGAACGG.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................ACGGAATAGTCGGACGACGACGAC.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...........................................C--AGAACGGAATAGTCGGACG.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................GCAGCAGCAGCAGCAGC------AGCT---------------........................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
......................................................................................................GCAGTAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
................................................................................................GCAGTAGCAGTAGCAGCAGC..........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
......................................................................................................GCAGTAGCAGCAGCAGCAGCAGC------...........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droBip1

CGTCGTTTCATTCAAGTGTCCAACGTTTGTCGGAGCGGTCGCAC--AGAACGGAATAGTCGG---------ACGGTTCGCACA------GTTTTCCGCA--------------------------------AGCT---------------CTACA---------------------CACACCGTATA---------------------GTGTATATGTACATATAT--CTC------------------TGGTTCGTCGGC-TTCGTTCG-TTAGG------------------------------------CTCTTCCCGAACAGG-------------------CG-------GCGG------------------GCAACCGTTGGACATC----C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCA----TACAACGG--TACTTCG---------ACGGTTCGCA-A------TTCTCTCTCA--------------------------------CGCC---------------CCCTC--------GTTC------------------------------------------------------------------------GCTTGTTCTCCGGTGCTGCT-----------CTG-----CTCTCTCTCGGT--C--GCTCGAGCCTGAAGGGAATACGGGGGAGGAGG-------------------AG-AG----TCGGAGAGGTCGCCAGTGCATACGCACCGTGAGAAAAC----C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACGGTTTGCC-A------GTTTTTCGCT--------------------------------CGCT---------------CTCTC------------------------------------------------------------------------TCTCTCGGCCGCTCTTGCT----------------------CTCTTACTCT----------------------CGCC---GTGTACTGTTAGCAAA-AGG-------------------CT-------CCCGAAAAATAAGG----------AACCGTTAGTAAAAGCCCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACGGTTTGCC-A------GTTTTTCGCT--------------------------------CGCT---------------CTCTCT----------------------------------------------------------------------------CGTCCGCTCTTGCT----------------------CTCTTACTCT----------------------CTCC---GTGTACTGTTAGCAAA-AGG-------------------CT-------CCCGAAAAATAAGG----------AACCGTTAGTAAAAGCCCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACGGTTGGCAGATTCAGATT----------------------------------------CGCT---------------CTCCGGGCTGCTCTCG---CCCACT---------------------------------------------------CTCTCTCGCGCGCTGTGCCA----------------------CTCTT-------------------GCCTCTCT-------GTGTACTGTTAGCAAA-AGGCATAGAGCAACGGCTCCGGCT-------GCCGAAAAGCAAGGAGCTTGC-GATACCGTTGGCCAAG----C	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGG---------ACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTAGCGCT--------------------------------CGCT---------------CTCTCGT---------------------------------------------------------------------------TGCCCGCTCTTGCTCTCCAGCTCTCCT-----------AT------CTCTCTCTCG--GTGTCGTTTT-------GCGGACTGTTAGCAAGGAGG-------------------CGCAATCGTATAGAAAAATAAGGAGCTAGCAATAACCGTTAGTAAAAGC--C	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCTCT-------------CCCTCT---------------------------------------------------CTCTC------------------TCGTTAGCCCGCGCTCTCTCC----------------TGCT-----------------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCAAAG----C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................GAGCGGTCGCACACAGAA............................................................................................................................................................................................................................................................................................................................................................	18	1	51.00	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	5	0	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	3	3	2	0	0
............................GCCGGAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	25	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	2	3	1	7	0	5	1	6	4	1	0	0	1	0	0	0	0	0	0	0	1	11	0	0
................................GAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	21	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	3	1	2	7	0	0
........................................GCACACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	21	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	1	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	2	1	2	0	0
...........................................CACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	18	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0
............................GCCGGAGCGGTCGCACACAGAA............................................................................................................................................................................................................................................................................................................................................................	22	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
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.................................................ACGG--TAGTCGGATAG-TCGGACGGT..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCTC...................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CGGTCGCACACAGAACGG--TAGTCGG................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAGG-------------------CG-------ACCGAAAAATAAGA.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSim2

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCTTCCGCTCTCT--------------------------------------------------------------------------CTTGCTCTCTCGCTCGCCCGCGCTCTCTCC----------------TGCT-----------------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCAAAG----C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................GCACACAGAACGG--TAGTCGGATAG-...........................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GTCGGATAG-TCGGACGGTTGGCAGAT..........................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCACACAGAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCGGAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
...........................................CACAGAACGG--TAGTCGGATAG-...........................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCACACAGAACGG--TAGTCGGATA.............................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATAG-TCGGACGGTTGGCAGATTCCGATT...................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCACACAGAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTCCAACGTTTGCCGGAGCGG........................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CACAGAACGG--TAGTCGGATAG-T..........................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCACACAGAACGG--TAGTCGGG...............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ACACAGAACGG--TAGTCGGATAG-TCGGA......................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...................................................................TCGGACGGTTGGCAGATTC........................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCACACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCGGAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAGCGGTCGCACACAGAACGG--TAGT...................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................CGTTTGCCGGAGCGGTCGCA...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................GTCGGATAG-TCGGACGGTTGGCAGA...........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AGAACGG--TAGTCGGATAG-TCGGAC.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATTCAAGTGTCCAACGTTT..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................AG-TCGGACGGTTGGCAGATTCCG......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCACACAGAACGG--TAGTCGGAT..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CACAGAACGG--TAGTCGGATAG-TCGG.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ACAGAACGG--TAGTCGGATAG-TCG........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGCCGGAGCGGTCGCAC..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GGTCGCACACAGAACGG--TA.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCACACAGAACGG--TAGTCGGATAG-T..........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GATAG-TCGGACGGTTGGCA.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGCGGTCGCACACAGAACG..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCACACAGAACGG--TAGTCGGATA.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCGGAGCGGTCGCACACAGAACGG--TA.....................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................AACGG--TAGTCGGATAG-TCGGAC.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GAACGG--TAGTCGGATAG-TCGG.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGA......................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TAGTCGGATAG-TCGGACGGTTGGCA.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TCGCACACAGAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................ACAGAACGG--TAGTCGGATAG-TCGGAC.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................CGGATAG-TCGGACGGTTGGCAGATTCC.......................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCCGGAGCGGTCGCACAC................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................TCGGATAG-TCGGACGGTTGGCAGATT.........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGCCGGAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATAG-TCGGACGGTTGGCAG............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CACACAGAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................GTCGGATAG-TCGGACGGTTGGCAGATT.........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAGCGGTCGCACACAGAACGG--TA.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................G-TCGGACGGTTGGCAGATTCCGA.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCACACAGAACGG--TAGTCGGATAG-...........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGTCCAACGTTTGCCGGAGCGG........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCACACAGAACGG--TAGTCGGATAG-T..........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTCCAACGTTTGCCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................G-TCGGACGGTTGGCAGATTCCGATT...................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCTTCCGCTCTCTC------------------------------------------------------------------------TCTTGCTCTCTCGTTCGCCCGCGCTCTCTCC----------------TGCT-----------------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCAAAG----C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................CACAGAACGG--TAGTCGGATAG-TCGGA......................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	1
.................................AGCGGTCGCACACAGAACGG--TAGT...................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2
............................GCCGGAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	1
.............................................................GATAG-TCGGACGGTTGGCAGATT.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
.................................AGCGGTCGCACACAGAACGG--TA.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.............................................CAGAACGG--TAGTCGGATAG-TCGGACG....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
........................................GCACACAGAACGG--TAGTC..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................................GCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...........................................CACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.......................................CGCACACAGAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1
................................GAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
....................................................................................TCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCT..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................CCGCGCTCTCTCC----------------TGCT-----------------GTGT.......................................................................................	21	1	1.00	1	0	1	0	0
.................................AGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...............................................................TAG-TCGGACGGTTGGCAGA...........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
................................GAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...........................................CACAGAACGG--TAGTCGGATAG-TC.........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
................................GAGCGGTCGCACACAGAACGG--T......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.....................AACGTTTGCCGGAGCGGTCGCA...................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...........................................CACAGAACGG--TAGTCGGC...............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............GTGTCCAACGTTTGCCGGAGCGGTCGC....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0

droYak3

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGGT---------------CTCCCCTCCGCTCTCTCA-CTCACT---------------------------------------------------CTCTC------------------TCGTTCGCGCGCGCTCTCTCC----------------TGCTGTGGCTCTCT-------GTGTACTGTTAGCAAGGAGG-------------------CG-------ACCGAAAAATAAGGAGCTTGCCGAAACCGTTAGCAAAG----C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................TGCCGGAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	26	1	13.00	13	0	0	0	0	0	0	0	0	0	0	13
............................GCCGGAGCGGTCGCACACAGAACGG--.......................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
.................................AGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0
............................GCCGGAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0
.....................AACGTTTGCCGGAGCGGTCGCAC..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................GCCGGAGCGGTCGCACAC................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CGCGCGCGCTCTCTCC----------------TGCTT...........................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................CGGAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................ATAG-TCGGACGGTTGGCAGATTCCGA.....................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................TTTGCCGGAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTCC----------------TGCTGTGGCTCTCT-------GTGTACTGT..................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................CGGTTGGCAGATTCCGATTTTTGCG.............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

CGTCGTTTCATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG--TAGTCGGATAG-TCGGACGGTTGGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------CTCCCTTCCGCTCTCTCTC------TCTCTGT----------C---------ACA---------------------CACTC------------------TCGTTTGCCCGCGCTCTCTCC----------------TGCTGTGGCTCTCT-------GTGTACTGTTAGCAAGGAGG-------------------AG-------ACCGAAAAATAAGGAGCTTGCCGAAACCGTTAGCAAAG----C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................GAGCGGTCGCACACAGAA............................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	2	0	0	0	0	2	0
............................GCCGGAGCGGTCGCACACAGAACG..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........................................GCACACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................GCACACAGAACGG--TAGTC..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.............................................................................GGCAGATTCCGATTTTTGCGCT--------------------------------CGCT---------------........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...........................................................CGGATAG-TCGGACGGTTGGC..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
........................GTTTGCCGGAGCGGTCGCACACA...............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
............................GCCGGAGCGGTCGCACACA...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
................................GAGCGGTCGCACACAGAAC...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...............................................GAACGG--TAGTCGGATAG-T..........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................GCTCTCTCC----------------TGCTGTGGCTCTCT-------GT.........................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.................................................................G-TCGGACGGTTGGCAGATTCCGA.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.................GTCCAACGTTTGCCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........................................CACAGAACGG--TAGTCGGATAG-T..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...........................................CACAGAACGG--TAGTCGGA...............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0

dp5

CATCGTCTCATTCAAGTGTCCAACTTTTGTCGAAGCGGTCA--TACAAAACGG--CAGTCGG---------ACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................GTCGAAGCGGTCA--TACAAAACGG--C......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................AGCGGTCA--TACAAAACGG--CAGTCGG---------A......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

----------------------------GCAGCAGCAGCAGCAGCAGCAGCAG--CAGCAGC---------AAGGA---------------TGTCCTCG--------------------------------CACG---------------TCAC---------------------GTACACCGAAAAAAA--TATTTATTATACATATATATGTATGTACATGTGT--ATC------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TTG----------------------TATGCAGCAGCAGCAGCAGCAGCAGCAG--CAGCAGC---C-CCAGCAGTCTAGCAGCCACAGAAA-------------------------------------------------------------C----------------------CACCGCTACAACAATGATATAAA-TA-ATATATATACCTATGTATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATACTCAACTCGG----C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................AGCAGCAGCAGCAG--CAGCAGC---C-...........................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0

droVir3

GATCTTTTACCAATATTGTGCAGCGC----------------ACACGGCACGA--CGGCTG--------------ATCGCAGA------G----------CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................AGCAGCAGCAACAGCAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GCAGA------G----------CAGCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................AGCAGCAGCAGCAGCAGCAGCAACA.............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AGCAGCAGCAGCAACAGCAGC........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GCAGCAGCAGCAGCAGCAACAGCA..........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGA------G----------CAGCAGCAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAGCAGCAGCAGCAGCAGCAACAG............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CAGCAGCAGCAGCAGCAGCAG..................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GCAGCAGCAGCAGCAGCAACAGCAG.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CAGA------G----------CAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droMoj3

CAGCAGCGACAGCAATCGC-----------------------ATCC----------------------------------------------ATCCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTACAACT---ACAAAT------ACAC---------------------CTACACATACATAGG--TATATA-TATATATATATATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATATAT----C	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

G----------------------------CAGCAGCAGCAGCAGCAGCAGCAG--CAGCAG------------------------------------------------------------------------CCCTTCCCAGCCAACACACAC---------------------ACACACA----------T---------ATATATATACACATGTACATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATTTAG----T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_1700

scaffold_13266:952459-952609 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.7	-42.7	-42.6