ID:

dan_1695

 Coordinate:

scaffold_13266:869903-870053 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF12423-cds]; exon [dana_GLEANR_12426:4]; intron [Dana\GF12423-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############################---------------------
TTTTTTGGAAATTTTAATTACTTTATTTTTATGATCTGAAAAACATTTATGACTCATAAATGGAATTGAAATTTATTCGTTTTATTTAATAAAATTATAATCATCATAAATCTTTAGTTTCGAAAAATAACAATCATAAAATTATTTAATTTTTTATTATCCATAACTAATAAGATTTTGCCGCCATTCTTTTATTTGCAGAATTCATGGAGATGATGACTGGCGAGTAAGCGCATTGGACCCAATCTCAT
**************************************************......((((((((((.(((.....)))))))))))))................((.((((((((((((......(((((.......((((((....)))))))))))......)))))..))))))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V105
male body		 V106
head
.............................................................................................................................................................................................................................GGCGTGTAAGCGGTTTGGAC.......... 20 3 4 1.25 5 0 0 3 1 1
..........................................................................................................................................................................................................ATTCATGGAGATGATGACTGGCGAGC....................... 26 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGCGCATTG............. 27 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGCGCA................ 24 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGCG.................. 22 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................................................TGGAGATGATGACTGGCGAGTAAG.................... 24 0 1 1.00 1 0 0 1 0 0
......................................................................................................................................................................................................................GATGACTGGCGAGTAAGCGC................. 20 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................................GACTGGCGAGTAAGCGCATTGGACCCA....... 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................GGCGAGTAAGCGCATTGGACCCAATCTC.. 28 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................TGCGCATTGGACCCAATCTC.. 20 1 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................GACGATGACTGGCGAGTAAGCGCATT.............. 26 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................CGTGGAGATGATGACTGGCGAGT....................... 23 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................AAGCGCATTGGACCCAATCT... 20 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................ATAACTAATAAGGTGTTGCC..................................................................... 20 2 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................ATGACTGGCGAGTAAGCGCATTG............. 23 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................ATTCATGGAGATGATGACTGGC........................... 22 0 2 0.50 1 0 1 0 0 0
..........................................................................................................................................................................................................ATTCATGGAGATGATGACT.............................. 19 0 2 0.50 1 0 1 0 0 0
.............................................................................................................................................................................................................CATGGAGATGATGACTGGC........................... 19 0 2 0.50 1 0 1 0 0 0
.....................................................................................................................................................................................................GATGAATTCATGGAGATGATGACC.............................. 24 3 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................AATTCATGGAGATGATGACTGG............................ 22 0 2 0.50 1 0 0 1 0 0
.........................................................................................................................................................................................................AATTCATGGGGATGATGTCTG............................. 21 2 3 0.33 1 0 0 1 0 0
.......................................................................................................................................................TGTTATTACCCATAACTAGTA............................................................................... 21 3 3 0.33 1 0 1 0 0 0
...................................................................................................................AGTTACGAAAAATAACAA...................................................................................................................... 18 1 3 0.33 1 1 0 0 0 0
.............................................................................................................ATAGTTAGTTACGAAAAATAACA....................................................................................................................... 23 3 4 0.25 1 0 1 0 0 0
.......................................................................................TATAAAATTATAATCATCACCA.............................................................................................................................................. 22 3 5 0.20 1 1 0 0 0 0
.........................................................................................................................................................................................................AATTCATGGAGGTAGTGAC............................... 19 3 20 0.15 3 0 0 1 2 0
.........................................................................................................................................................................................................AATACCTGGAAATGATGACT.............................. 20 3 15 0.13 2 2 0 0 0 0
....................................................................................................................................................................................................................ATGATGCCTGACGAGTAGG.................... 19 3 11 0.09 1 0 0 0 1 0
....................CTTTATTTGTTTGATCTGA.................................................................................................................................................................................................................... 19 2 12 0.08 1 0 1 0 0 0
..........................................................................................................TCAACCTTTAGTTTGGAAAA............................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0
................................................................................................................GTTAGTTACGAAAAATAACG....................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................................................................................AATTCAGGGAGGTAATGAC............................... 19 3 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................................GATGAATGGTGAGCAAGCG.................. 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

AAAAAACCTTTAAAATTAATGAAATAAAAATACTAGACTTTTTGTAAATACTGAGTATTTACCTTAACTTTAAATAAGCAAAATAAATTATTTTAATATTAGTAGTATTTAGAAATCAAAGCTTTTTATTGTTAGTATTTTAATAAATTAAAAAATAATAGGTATTGATTATTCTAAAACGGCGGTAAGAAAATAAACGTCTTAAGTACCTCTACTACTGACCGCTCATTCGCGTAACCTGGGTTAGAGTA
**************************************************......((((((((((.(((.....)))))))))))))................((.((((((((((((......(((((.......((((((....)))))))))))......)))))..))))))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
AAAAAACAGTTGAAATTAATGAAA................................................................................................................................................................................................................................... 24 3 6 0.17 1 1
.....................AAACAAAACTAGTAGACTTTT................................................................................................................................................................................................................. 21 3 20 0.05 1 1
.............................................................................................................................................................................................AAAATAAACGGCTTAAGAA........................................... 19 2 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:869853-870103 - dan_1695 TTT------------------------------------------------------------------------TTTG--GA----AATTTT--------A-----------------------------ATTACTTTA--------------------TTTTTAT-------------------G---------ATCT---GAAAAACATTTATGACTCATAAATGGAATT------------------------------------------------------GAAATTTAT-TCGTTTTATTTAATAAAATTATAATCATCATAAATCTTTAGTTTCGAAAAATAACAA----TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------AA------------AATTATTTAATTTTTTATTATCCATAACTAATAAGATTTTGCCGCCATT--CTTTTATTTGCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----G-----CATTGGACCCAATCTCAT
droBip1 scf7180000396730:1877601-1877755 - TTT------------------------------------------------------------------------TTTG--AA----AATTGT--------A-----------------------------ATTACTCTT--------------------TTTTAAT-------------------G---------ATCTAATGAGAAAGAGTTATGACTCATTAATAGAATC------------------------------------------------------GGAAAGTTT-TCGTTTTATTTAACCAATTTAAAATCATATTAAATCTTGACATT--TTAAATAAAAA----TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------CA------------GAACATTCGA------------------------------------------------------------------------------------------------------------GTCTT
droKik1 scf7180000302682:8349-8461 + TTA------------------------------------------------------------------------ATTTTCC-C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------ATATTCTTGATA--------------------------------------------------------------ACTCAACTAATTACTCCACTTT--------------------------T--C----CTTTTCCCTCTTGCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----C-----AAACCAACACAT-CGCAT
droFic1 scf7180000453773:104085-104274 - TTT-GGA----C----------------------------------------TTTAGTTTATTTCTTCGTATGTAATTTTTG-TGAAAGG-----------------------------------------TTTTTAATA-AT--------------------AACAATACAAAGTA-----------------------------------------------------------T--------------------------------------------------------------------------------------------------------------TGTACAATTGT--------------------------------------------------------------------------------------------------------------------AT------------------ATG--CC----------------------TTAGTTCTGGTC--------------------------------------------------------------ACTTTATTAATGATATTT------------------------------CCTCCCATTCAATTAATTTTACAGAATTCATGGAGATGATGACTGGAGAATAAGC----G-----TTCTGGACCCAA-CTTG-
droEle1 scf7180000491214:2606164-2606292 - ATC------------------------------------------------------------------------ACTA--AG----CGCTTT--------A-----------------------------TTTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAGCTTAATCGA---------------------------------------------------------------------------------------------------------------TTTTAATTAATTGTTCAACTT--------------------------TCCCA----TCCGTTTCATTCACAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTTTGGACCCAT-CCTAT
droRho1 scf7180000779902:19347-19402 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAATTTACAGAATTCATGGAGATGATGACCGGCGAGTAAATAAACG-----CACTG-------------
droBia1 scf7180000301754:1129102-1129369 + ATT------------------------------------------------------------------------TGTA--AA----ATG-------------------------------------------TATTTTA-TT--------------------TAAATGAATTTATT-----TC-G-TGCT--TTGACTTAAAGAGGTA-------------------------------------------------------------------GGCCATAACCTGATATTTATTTC----------------------------------------------------------------GCTTTAAAATATT-------------------------------------------------------------------GT-----------------------------TCAT---------G-----------TT----------------------GAACGTACTTATTGTATAAATATTTAAAATATTTTGAATAGCATAGATACCTTTCGCTGTTCAACCTTAAACTCAGCCATTTAATTGTTTTACTT--------------------------TCCTT----TTCCTTTTATTTTTAGAATTTATGGAGATGATGACTGGCGAGTAAGC----A-----TTTTGGACCCCT-CTTAT
droTak1 scf7180000415313:91077-91385 + TCAAAGGGGAAA--TAATACTTAAAATTTAACAATGTGTATACAATGCAATG-----------------------C-------------T-----------------------------------------TGAACTTTA-T-------------------T-ATCTTGAAACAAAT-----TATT-TATTCTC---------------------------------------------------------------------------------TGGTTAA------------------------------------------------------------------GACAATTTATCTCTTGAAATCTTATAAACATTTGTAAATTAGTTGGCAACAAATGTCTTTTTAGTTTGATAAATTGCTAGTATGTTTTCTAGAAGAC--------------------CCTTTTT--TCCT---------A-----------TT----------------------TTACTTTTGATC--------------------------------------------------------------TCTTAATTAATCATTTCACTT--------------------------TCCCA----TTCATTTCCTTTACAGAATTCATGGAGATGATGACTGGCGAGTAAGC----G-----TTTTGGACCCAT-CTTAT
droEug1 scf7180000409462:1342612-1342954 + TTT------------------------------------------------------------------------TGTG--GA----GATTTTTTGATGTTTACGAAATTTTTAGTTGTATTGATTAGATCGGTAATTGC-ATATACAGAACGGGTTTTTGT-TTCTTTAAACGTATTTTTTTATT-CATTTTC---------------------------------------------------------------------------------TAACCAA------------------------------------------------------------------AG----------------------------------------GTATAGACAAATATTTTCATAGTTTGACAGG-TGTTAGAGCTTT---------GACCTTTGGCCTTATAGTAGGGCTATTTATTAAATATAGCTGATAATAGTAGTTCTTATGACTGATATTAAAATTGTATACAG--GTTTATC--------------------------------------------------------------ATTCAATTAATTGTTCTACTTA--------------------------T-------TTTTATCCATTTACAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTTTGGACCCAT-CTTAT
dm3 chr2R:7161599-7161795 - ATA------------------------------------------------------------------------ATTGTTC-CGATTGG-----------------------------------------TGTACCAGT-TT--------------------AAAAAGAAACAAAT-----TT-G-TATT--ATG-------------------------------------------------------------------------------AGGTTTT-----------------------------------------------------------------GGTCCAATTTCCACTTGTATTAGTACACA-------------------------------------------------------------------AA-----------------------------CCAT---------A-----------TT----------------------TTAGTTATCAACAATAA------------------------------------------------------------TAATAATTAATATTA---T----------------------------TT----TGTATTTAATTTCCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTGTGGACCCAA-CGTAT
droSim2 2r:7881798-7882001 - dsi_28982 GCC-----------------------------------------------------------------TTTTATAATTGTTT-CGATCGG-----------------------------------------TGTACCAGT-TT--------------------GAAAAGAAACAAAT-----TT-G-TTTT--AAG-------------G-------------TATTAGAATTAAAT--------------------------------------------------------------------------------------------------------------GTTACAATTTT-TCTTGTATTAGTACACA-------------------------------------------------------------------AA-----------------------------CCAT---------A-----------TT----------------------TTATTTATCAAC--------------------------------------------------------------ACTTAATTAATAATAATC---T----------------------------TT----TTAATTTATTTTCCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTGTGGACCCAT------
droSec2 scaffold_1:4729733-4729908 - GCC-----------------------------------------------------------------TTTTATAATTGTTT-CGAATGG-----------------------------------------TGTACCAGT-TT--------------------GAAAAGAAACAAAT-----TT-G-TTTT--AAG----------------------------------------T--------------------------------------------------------------------------------------------------------------GGTCCAATTTC--------------------------------------------------------------------------------------------------------------------CCAT---------A-----------TT----------------------TTAGTTATCAAC--------------------------------------------------------------ACTTAATTAATAATATTC---T----------------------------TT----TTAATTTAATTTACAGAATTCATGGAAATGATGACTGGCGAGTAAGC----T-----TTGTGGACCCAT-CGTAT
droYak3 2R:1978104-1978391 + ATA------------------------------------------------------------------------ATTG--GACGATCTG-----------------------------------------TGTACCAGTATT--------------------TAACAGACA-----------T-T-TTGT--AAG-------------G-------------TATTAGGAT-AAATGATAGTGTAGTGAACTGGATTACCTTCAGTTCTTTTAG-TAT-GT-------------T-GCATTA---ATAATAAAAGTATAATTCTGATGTATTAT-----TCGGTAGGGACCAG----CCCTAGTATTATTATTCA-------------------------------------------------------------------AC-----------------------------CCAT---------AATTAGAACGCCTT----------------------TGAGTTTTTGCC--------------------------------------------------------------ACTCAATTAATTATCTT----T----------------------------TT----CTAATTTCATTTTCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTGTGGACCCAT-CGCAT
droEre2 scaffold_4845:18626670-18626854 + TAA------------------------------------------------------------------------TTTG--G-CTAGCTG-----------------------------------------TGCACCCGC-TT--------------------AC----------------------TTTT--AG---------------------------------------------------------------------------------GGTTTT-------------T-GCGTTG---ATA--------------------------------------------------CCTAGTATAATTATACA-------------------------------------------------------------------AC-----------------------------CCAT---------ATATCATACGC-TT----------------------TTAGTTTTCGCC--------------------------------------------------------------ACTCCATTAATAATCTTA---T----------------------------TT----TTAATTGAATTTTCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----G-----TCATGGAGCCATTTTTTT
dp5 3:11047207-11047285 - ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------TCCCA-----CCATTTGATCCACAGAATTCATGGAGATGATGACTGGCGAATAAGT----CTCTACTCTTGGACACACACACAT
droPer2 scaffold_4:6369773-6369851 - ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------TCCCA-----CCATTTGATCCACAGAATTCATGGAGATGATGACTGGCGAATAAGT----CTCCACTCTTGGACACACACACAT
droWil2 scf2_1100000004513:468347-468447 - AAAATGATGATCAC------------------------------------------------------ATTT----CTT--A--GTGTTG-----------------------------------------GGGACTATT-TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATT------------------------------------------------------------------------------------------------------------------------------CAAAACCATTTTATTTCA-TTTCAGAATTCATGGAGATGATGACTGGCGAATAAAC----------------------------
droVir3 scaffold_12963:14617944-14618026 - ATC-CGA---------------------------------------------------------------------TTA--GCTAATCTCTAT--------A-----------------------------T----------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCT------------------------------------------------------------------------------------------------------------------------------TAACGCAAAT--TTTCTTTTGGCAGAGTTCATGGAAATGATGACGGGCGATTGA------------------------------
droMoj3 scaffold_6680:3461526-3461584 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAACTTACAGAATTCATGGAGATGATGACCGGCGAGTAAATA---A-----ACGCAGTCCCA-------
droGri2 scaffold_15110:9884790-9884841 + CTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCTGTTTAATTTACAGAATTCATGGAGATGATGACCGGCGAGTAA------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTT------------------------------------------------------------------------TTTG--GA----AATTTT--------A-----------------------------ATTACTTTA--------------------TTTTTAT-------------------G---------ATCT---GAAAAACATTTATGACTCATAAATGGAATT------------------------------------------------------GAAATTTAT-TCGTTTTATTTAATAAAATTATAATCATCATAAATCTTTAGTTTCGAAAAATAACAA----TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------AA------------AATTATTTAATTTTTTATTATCCATAACTAATAAGATTTTGCCGCCATT--CTTTTATTTGCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----G-----CATTGGACCCAATCTCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACTGGCGAGC................................2611.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGC----G-----CATTG.............2711.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGC----G-----CA................2411.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGC----G-----..................2211.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGATGATGACTGGCGAGTAAG.............................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGGCGAGTAAGC----G-----C.................2011.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----G-----CATTGGACCCA.......2711.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGTAAGC----G-----CATTGGACCCAATCTC..2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGC----G-----CATTGGACCCAATCT...2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGGCGAGTAAGC----G-----CATTG.............2311.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACTGGC....................................2220.501001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACT.......................................1920.501001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGC....................................1920.501001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCATGGAGATGATGACTGG.....................................2220.501100000
droBip1
TTT------------------------------------------------------------------------TTTG--AA----AATTGT--------A-----------------------------ATTACTCTT--------------------TTTTAAT-------------------G---------ATCTAATGAGAAAGAGTTATGACTCATTAATAGAATC------------------------------------------------------GGAAAGTTT-TCGTTTTATTTAACCAATTTAAAATCATATTAAATCTTGACATT--TTAAATAAAAA----TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------CA------------GAACATTCGA------------------------------------------------------------------------------------------------------------GTCTTSizeHit CountTotal NormTotal
No Reads
droKik1
TTA------------------------------------------------------------------------ATTTTCC-C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------ATATTCTTGATA--------------------------------------------------------------ACTCAACTAATTACTCCACTTT--------------------------T--C----CTTTTCCCTCTTGCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----C-----AAACCAACACAT-CGCATSizeHit CountTotal NormTotal
No Reads
droFic1
TTT-GGA----C----------------------------------------TTTAGTTTATTTCTTCGTATGTAATTTTTG-TGAAAGG-----------------------------------------TTTTTAATA-AT--------------------AACAATACAAAGTA-----------------------------------------------------------T--------------------------------------------------------------------------------------------------------------TGTACAATTGT--------------------------------------------------------------------------------------------------------------------AT------------------ATG--CC----------------------TTAGTTCTGGTC--------------------------------------------------------------ACTTTATTAATGATATTT------------------------------CCTCCCATTCAATTAATTTTACAGAATTCATGGAGATGATGACTGGAGAATAAGC----G-----TTCTGGACCCAA-CTTG-SizeHit CountTotal NormTotal
No Reads
droEle1
ATC------------------------------------------------------------------------ACTA--AG----CGCTTT--------A-----------------------------TTTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAGCTTAATCGA---------------------------------------------------------------------------------------------------------------TTTTAATTAATTGTTCAACTT--------------------------TCCCA----TCCGTTTCATTCACAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTTTGGACCCAT-CCTATSizeHit CountTotal NormTotal
No Reads
droRho1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAATTTACAGAATTCATGGAGATGATGACCGGCGAGTAAATAAACG-----CACTG-------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATT------------------------------------------------------------------------TGTA--AA----ATG-------------------------------------------TATTTTA-TT--------------------TAAATGAATTTATT-----TC-G-TGCT--TTGACTTAAAGAGGTA-------------------------------------------------------------------GGCCATAACCTGATATTTATTTC----------------------------------------------------------------GCTTTAAAATATT-------------------------------------------------------------------GT-----------------------------TCAT---------G-----------TT----------------------GAACGTACTTATTGTATAAATATTTAAAATATTTTGAATAGCATAGATACCTTTCGCTGTTCAACCTTAAACTCAGCCATTTAATTGTTTTACTT--------------------------TCCTT----TTCCTTTTATTTTTAGAATTTATGGAGATGATGACTGGCGAGTAAGC----A-----TTTTGGACCCCT-CTTATSizeHit CountTotal NormTotal
No Reads
droTak1
TCAAAGGGGAAA--TAATACTTAAAATTTAACAATGTGTATACAATGCAATG-----------------------C-------------T-----------------------------------------TGAACTTTA-T-------------------T-ATCTTGAAACAAAT-----TATT-TATTCTC---------------------------------------------------------------------------------TGGTTAA------------------------------------------------------------------GACAATTTATCTCTTGAAATCTTATAAACATTTGTAAATTAGTTGGCAACAAATGTCTTTTTAGTTTGATAAATTGCTAGTATGTTTTCTAGAAGAC--------------------CCTTTTT--TCCT---------A-----------TT----------------------TTACTTTTGATC--------------------------------------------------------------TCTTAATTAATCATTTCACTT--------------------------TCCCA----TTCATTTCCTTTACAGAATTCATGGAGATGATGACTGGCGAGTAAGC----G-----TTTTGGACCCAT-CTTATSizeHit CountTotal NormTotal
No Reads
droEug1
TTT------------------------------------------------------------------------TGTG--GA----GATTTTTTGATGTTTACGAAATTTTTAGTTGTATTGATTAGATCGGTAATTGC-ATATACAGAACGGGTTTTTGT-TTCTTTAAACGTATTTTTTTATT-CATTTTC---------------------------------------------------------------------------------TAACCAA------------------------------------------------------------------AG----------------------------------------GTATAGACAAATATTTTCATAGTTTGACAGG-TGTTAGAGCTTT---------GACCTTTGGCCTTATAGTAGGGCTATTTATTAAATATAGCTGATAATAGTAGTTCTTATGACTGATATTAAAATTGTATACAG--GTTTATC--------------------------------------------------------------ATTCAATTAATTGTTCTACTTA--------------------------T-------TTTTATCCATTTACAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTTTGGACCCAT-CTTATSizeHit CountTotal NormTotal
No Reads
dm3
ATA------------------------------------------------------------------------ATTGTTC-CGATTGG-----------------------------------------TGTACCAGT-TT--------------------AAAAAGAAACAAAT-----TT-G-TATT--ATG-------------------------------------------------------------------------------AGGTTTT-----------------------------------------------------------------GGTCCAATTTCCACTTGTATTAGTACACA-------------------------------------------------------------------AA-----------------------------CCAT---------A-----------TT----------------------TTAGTTATCAACAATAA------------------------------------------------------------TAATAATTAATATTA---T----------------------------TT----TGTATTTAATTTCCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTGTGGACCCAA-CGTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGGCGAGTAAGC----A-----TTGT..............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGC----A-----TTGTGGACCCAA-CGT..2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGAGTAAGC----A-----TTGT..............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GTTC-CGATTGG-----------------------------------------TGTACCAGT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----A-----TTGTG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----A-----TTGTGGACCC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGC----A-----TTGTGGACCCAA-CGTAT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGGCGAGTAAGC----A-----TTG...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGC....................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----A-----TTGTGGAC..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGTAAGC----A-----TTGTGGACCCAA-C....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGAGTAAGC----........................2711.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAGTAA..............................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................T-G-TATT--ATG-------------------------------------------------------------------------------AGGTTTT-----------------------------------------------------------------GG...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACTGGCGAGTAAGC----A-----..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGAGTAAG.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACTGGCGAGTAAGC----A-----T.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AT-----TT-G-TATT--ATG-------------------------------------------------------------------------------AGGTTTT-----------------------------------------------------------------GG...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----A-----TTGTGGACC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATGACTGGCGAGTAAGC----A-----T.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCG...................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGG.....................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGATGACTGGCGAGT................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCG...................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCATGGAGATGATGACTGGCGAGT................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGA..................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGAGATGATGACTGGC....................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCGA..................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCGAGT................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGATGACTGGCGAGTA...............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGATGACTGGCGAGT................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCC-----------------------------------------------------------------TTTTATAATTGTTT-CGATCGG-----------------------------------------TGTACCAGT-TT--------------------GAAAAGAAACAAAT-----TT-G-TTTT--AAG-------------G-------------TATTAGAATTAAAT--------------------------------------------------------------------------------------------------------------GTTACAATTTT-TCTTGTATTAGTACACA-------------------------------------------------------------------AA-----------------------------CCAT---------A-----------TT----------------------TTATTTATCAAC--------------------------------------------------------------ACTTAATTAATAATAATC---T----------------------------TT----TTAATTTATTTTCCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTGTGGACCCAT------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGGCGAGTAAGC----A-----TTGTGGACCC........2712.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGC....................................1921.50300200000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGA..................................2121.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAGC----A-----TTGTGGACCC........1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGC----A-----TTGT..............2611.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGGCGAGTAAGC----A-----TT................2111.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCG...................................2021.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTAAGC----A-----TTGTGGACCC........2011.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACTGGCGAGTAAGC----A-----TTGT..............2511.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCGAGT................................2221.00200200000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGAGATGATGACTGG.....................................2020.50100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGAGT................................2320.50100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCGAG.................................2120.50100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACTGGC....................................2220.50100100000000000000
droSec2
GCC-----------------------------------------------------------------TTTTATAATTGTTT-CGAATGG-----------------------------------------TGTACCAGT-TT--------------------GAAAAGAAACAAAT-----TT-G-TTTT--AAG----------------------------------------T--------------------------------------------------------------------------------------------------------------GGTCCAATTTC--------------------------------------------------------------------------------------------------------------------CCAT---------A-----------TT----------------------TTAGTTATCAAC--------------------------------------------------------------ACTTAATTAATAATATTC---T----------------------------TT----TTAATTTAATTTACAGAATTCATGGAAATGATGACTGGCGAGTAAGC----T-----TTGTGGACCCAT-CGTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----T-----TTGT..............2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAAATGATGACTGGC....................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGGCGAGTAAGC----T-----TT................2111.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACTGGCGAGTAAGC----T-----TTGT..............2511.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGGCGAGTAAGC----T-----TTG...............2111.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAAATGATGACTGGC....................................2411.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGGCGAGTAAGC----T-----TTGT..............2311.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAAATGATGACTGGCGAGT................................2311.0010010
droYak3
ATA------------------------------------------------------------------------ATTG--GACGATCTG-----------------------------------------TGTACCAGTATT--------------------TAACAGACA-----------T-T-TTGT--AAG-------------G-------------TATTAGGAT-AAATGATAGTGTAGTGAACTGGATTACCTTCAGTTCTTTTAG-TAT-GT-------------T-GCATTA---ATAATAAAAGTATAATTCTGATGTATTAT-----TCGGTAGGGACCAG----CCCTAGTATTATTATTCA-------------------------------------------------------------------AC-----------------------------CCAT---------AATTAGAACGCCTT----------------------TGAGTTTTTGCC--------------------------------------------------------------ACTCAATTAATTATCTT----T----------------------------TT----CTAATTTCATTTTCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----A-----TTGTGGACCCAT-CGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCGAGTAAG.............................2511.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACTGGCGA..................................2420.50100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAGATGATGACTGGC....................................2420.50100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGAGT................................2320.50100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAGATGATGACT.......................................2120.50100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGAGATGATGACTGGC....................................2120.50100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCATGGAGATGATGACTGG.....................................2220.50100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGC....................................1920.50100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGCGAG.................................2120.50101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCATGGAGATGATGACTGGCGAGT................................2720.50101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGAGATGATGACTGGCGAGT................................2420.50100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAGATGATG..........................................1830.33100100000000
droEre2
TAA------------------------------------------------------------------------TTTG--G-CTAGCTG-----------------------------------------TGCACCCGC-TT--------------------AC----------------------TTTT--AG---------------------------------------------------------------------------------GGTTTT-------------T-GCGTTG---ATA--------------------------------------------------CCTAGTATAATTATACA-------------------------------------------------------------------AC-----------------------------CCAT---------ATATCATACGC-TT----------------------TTAGTTTTCGCC--------------------------------------------------------------ACTCCATTAATAATCTTA---T----------------------------TT----TTAATTGAATTTTCAGAATTCATGGAGATGATGACTGGCGAGTAAGC----G-----TCATGGAGCCATTTTTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGGCGAGTAAGC----........................1812.0020200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGATGATGACTGGCGAGTAAGC----........................2511.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAGTAAGC----G-----TC................2411.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAGC----G-----TCATGGAGCC........1811.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCGAGTAAGC----G-----TCATGGAGC.........2511.0010001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGGCGAGTAAGC----G-----T.................2011.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACTGGCGA..................................2420.5010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATCTTA---T----------------------------TT----TTA........................................................................1630.3310000001
dp5
ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------TCCCA-----CCATTTGATCCACAGAATTCATGGAGATGATGACTGGCGAATAAGT----CTCTACTCTTGGACACACACACATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------TCCCA-----CCATTTGATCCACAGAATTCATGGAGATGATGACTGGCGAATAAGT----CTCCACTCTTGGACACACACACATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAATAAGT----........................2116.006402000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGC....................................1913.003300000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACTGGCGAATAAGT----........................2012.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGT----CTCCACTCTTGGAC..........2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGC....................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAATAAGG----........................2111.001100000
droWil2
AAAATGATGATCAC------------------------------------------------------ATTT----CTT--A--GTGTTG-----------------------------------------GGGACTATT-TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATT------------------------------------------------------------------------------------------------------------------------------CAAAACCATTTTATTTCA-TTTCAGAATTCATGGAGATGATGACTGGCGAATAAAC----------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATGACTGGC....................................1811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGC....................................1911.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGAA.................................2211.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATGACTGGCGAAT................................1811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGA..................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACTGGCGAATA...............................1811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGG.....................................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGATGACTGGCGAATA...............................2011.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGGAGATGATGACTGGCG...................................2311.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATGACTGGCGAATAAA.............................2611.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGAGATGATGACTGGC....................................2011.00100010
droVir3
ATC-CGA---------------------------------------------------------------------TTA--GCTAATCTCTAT--------A-----------------------------T----------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCT------------------------------------------------------------------------------------------------------------------------------TAACGCAAAT--TTTCTTTTGGCAGAGTTCATGGAAATGATGACGGGCGATTGA------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGAAATGATGACGGGC....................................2122.004000001100000100000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTCTTTTGGCAGAGTTCAT....................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGAAATGATGACGGG.....................................2020.501000010000000000000000000000000000000000000000000000000000000000
droMoj3
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAACTTACAGAATTCATGGAGATGATGACCGGCGAGTAAATA---A-----ACGCAGTCCCA-------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCGGCGAGTAAATA---........................1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCGGCGAGTAAATA---A-----AC................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCATGGAGATGATGACCGGCGA..................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCATGGAGATGATGACC.......................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAGATGATGACCGGC....................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAGATGATGACCGGCGA..................................2611.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGAGATGATGACCGGCG...................................2511.001000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACCGGCGAGTAAATA---A-----ACGC..............2611.001100000
droGri2
CTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCTGTTTAATTTACAGAATTCATGGAGATGATGACCGGCGAGTAA------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:46 AM