ID:

dan_1690

 Coordinate:

scaffold_13266:552691-552841 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.3 -9.0 -8.9

Flybase annnotation

exon [dana_GLEANR_12447:3]; CDS [Dana\GF12444-cds]; intron [Dana\GF12444-in]

No Repeatable elements found

mature
star
  1. scaffold_257:58-78 -
  2. scaffold_688:1306-1326 -
  3. scaffold_689:1470-1490 -
  4. scaffold_2904:331-351 -
  5. scaffold_12916:7109049-7109069 -
  6. scaffold_13111:1266959-1266979 -
  7. scaffold_13111:1271752-1271772 -
  8. scaffold_13128:37208-37228 -
  9. scaffold_13250:2303274-2303294 -
  10. dan_1690  scaffold_13266:552756-552776 -
  11. dan_1691  scaffold_13266:557439-557459 -
  12. scaffold_13266:1351844-1351864 -
  13. scaffold_13266:1356592-1356612 -
  14. scaffold_13272:313757-313777 -
  15. scaffold_13272:317957-317977 -
  16. scaffold_13337:4418502-4418522 -
  17. scaffold_13337:11485997-11486017 -
  18. scaffold_13337:11490676-11490696 -
  19. scaffold_13337:17450874-17450894 -
  20. scaffold_13337:17455561-17455581 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGTCACCTATATTGTCATCTTTATATTTTCTATACCTACTAGCTTTAGAATCCACAATTTGTATGCACACACACACACCTATCGTTAAGTTCCACAAATGTAAATTTTCTTAGTACCAATTAGACAGCGAAACTGACAAGAACATATTACTCTACAGTCCACTACTCATTCGTCTTGCCGGTTGGGGATCATTCATCAAGCCAAGCGGATTTGAGTAACTTGTTCGCCAACAGGAAGCCTCAAAGTATCT
*******************************************************************************************************************.((((((....((((((((((...(((.........))).))))..........)))).))....))))))............***************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 M058
embryo
 V055
head
 V039
embryo
...............................................................................................................................................................................TTGCCGGTTGGGGATCATTCATC..................................................... 23 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................TCTACAGTCCACTACTCATTCGTCTTG......................................................................... 27 0 20 0.75 15 15 0 0 0 0
.......................................................................................................................................................TCTACAGTCCACTACTCATTCGTC............................................................................ 24 0 20 0.25 5 5 0 0 0 0
........................................................................................................................................................CTACAGTCCACTACTCATTCGTCTT.......................................................................... 25 0 20 0.25 5 4 1 0 0 0
...................................................................................................................ACCAATTAGACAGCGAAACTG................................................................................................................... 21 0 20 0.20 4 4 0 0 0 0
...................................................................................................................................................................TACTCATTCGTCTTGCCGGTTGG................................................................. 23 0 20 0.20 4 0 4 0 0 0
......................................................................................................................................................................TCATTCGTCTTGCCGGTTGGGGA.............................................................. 23 0 20 0.15 3 0 3 0 0 0
.......................................................................................................................................................TCTACAGTCCACTACTCATTCGTCTT.......................................................................... 26 0 20 0.15 3 0 3 0 0 0
.........................................................................................................................................................TACAGTCCACTACTCATTCGTCTTG......................................................................... 25 0 20 0.15 3 0 3 0 0 0
.....................................................................................................................................................ACTCTACAGTCCACTACTCATTCGTCTT.......................................................................... 28 0 20 0.10 2 2 0 0 0 0
............................................................................................................................................GAACATATTACTCTACAGTCCACTAC..................................................................................... 26 0 20 0.10 2 0 2 0 0 0
...................................................................................................................................................TTACTCTACAGTCCACTACTCATTCGTC............................................................................ 28 0 20 0.10 2 0 0 2 0 0
....................................................................................................................................................TACTCTACAGTCCACTACTCATTCGTC............................................................................ 27 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................CGTCTTGCCGGTTGGGGATCAT.......................................................... 22 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................TCCACTACGCATTCGTCTTGCCGG..................................................................... 24 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................CTACTCATTCGTCTTGCCGGT.................................................................... 21 0 20 0.05 1 1 0 0 0 0
..........................................................TTTGTATGCACACACACACACCTATCGT..................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................TTACTCTACAGTCCACTACTCATT................................................................................ 24 0 20 0.05 1 0 1 0 0 0
.............................................................................................................CTGAGTACCAATTAGACAGCGAAAC..................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................CATATTACTCTACAGTCCACTACTCA.................................................................................. 26 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................ATTCGTCTTGCCGGTTGGGGAT............................................................. 22 0 20 0.05 1 0 1 0 0 0
.....................................TACTAGCTTTAGAATCCACAATTGGT............................................................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................AACATATTACTCTACAGTCCACTACTC................................................................................... 27 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................................ATTACTCTACAGTCCACTACTCATTCGT............................................................................. 28 0 20 0.05 1 1 0 0 0 0
.....................................................CACAATTTGTCTGCACACACACACACC........................................................................................................................................................................... 27 1 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................TACAGTCCACTACTAATTCGT............................................................................. 21 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................TCTACAGTCCACTACTCATTCGT............................................................................. 23 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................CTCTACAGTCCACTACTCATTCG.............................................................................. 23 0 20 0.05 1 0 1 0 0 0
.....................................................CACAATTTGTATGCACACACACACACCTA......................................................................................................................................................................... 29 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................TACAGTCCACTACTCATTCGTCTTGC........................................................................ 26 0 20 0.05 1 0 0 0 0 1
.............................................................................................................................CAGCGAAACTGACAAGAACA.......................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
..............................................................................................................................................................TGCACCACTCATTCGTCTTGCCGGTTG.................................................................. 27 2 20 0.05 1 0 0 1 0 0
..............................................................................CCTATCGTTAAGTTCCACAAATGTAAA.................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TAGACAGCGAAACTGACAAG.............................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................TTACTCTACAGTCCACTACTCA.................................................................................. 22 0 20 0.05 1 0 1 0 0 0
.........................................................................................................TTTTCTTAGTACCAATTAGACAGCGAA....................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
..................................................ATCCACAATTTGTATGCAC...................................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................TCTACAGTCCACTACTCATTCGTCTTT......................................................................... 27 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................TACAGTCCACTACTCATTCGT............................................................................. 21 0 20 0.05 1 1 0 0 0 0
.......................................................................................AAGTTCCACAAATGTAAATTTTCTC........................................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................ATTCGTCTTGCCGGTTGGGGATC............................................................ 23 0 20 0.05 1 0 1 0 0 0
................................................................................................................................................ATATTACTCTACAGTCCACTACTCAT................................................................................. 26 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................TCATTCGTCTTGCCGGTTGGGG............................................................... 22 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................CTACTCATTCGTCTTGCCGGTTGGGG............................................................... 26 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................CGTCTTGCCGGTTGGGGATC............................................................ 20 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................TATTACTCTACAGTCCACTACTCAT................................................................................. 25 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................GATTACTCTACAGTCCACTACTCAT................................................................................. 25 1 20 0.05 1 0 1 0 0 0
....................................................................................................................................................TACTCTACAGTCCACTACTCATTCGTCTT.......................................................................... 29 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................TATTACTCTACAGTCCACTACTCATT................................................................................ 26 0 20 0.05 1 0 1 0 0 0
..............................................................TATGCACACACACACACCTATCGTT.................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................CTACAGTCCACTTCTCATTCGTCTT.......................................................................... 25 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................TACTCTACAGTCCACTACTCATTCGT............................................................................. 26 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................ATTCGTCTTGCCGGTTGGGGATCATT......................................................... 26 0 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................CGTCTTGCTGGTTGGGGATC............................................................ 20 1 20 0.05 1 0 1 0 0 0
.............................................TGAGAATCCACAATTTGTAT.......................................................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................ACTCTACAGTCCACTACTCATT................................................................................ 22 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TTCAGTGGATATAACAGTAGAAATATAAAAGATATGGATGATCGAAATCTTAGGTGTTAAACATACGTGTGTGTGTGTGGATAGCAATTCAAGGTGTTTACATTTAAAAGAATCATGGTTAATCTGTCGCTTTGACTGTTCTTGTATAATGAGATGTCAGGTGATGAGTAAGCAGAACGGCCAACCCCTAGTAAGTAGTTCGGTTCGCCTAAACTCATTGAACAAGCGGTTGTCCTTCGGAGTTTCATAGA
*****************************************************.((((((....((((((((((...(((.........))).))))..........)))).))....))))))............******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V039
embryo
 V106
head
 V055
head
.......................................................................TGTGTGTGGATAGCAATTCAAG.............................................................................................................................................................. 22 0 20 0.35 7 0 7 0 0 0 0
...........................................................................................................................CTGTCGCTTTGACTGTTCTTGTATAAT..................................................................................................... 27 0 20 0.25 5 5 0 0 0 0 0
.....................................................................TGTGTGTGTGGATAGCAATT.................................................................................................................................................................. 20 0 20 0.25 5 0 2 3 0 0 0
..........................................................................................................................TCTGTCGCTTTGACTGTTCTTGTAT........................................................................................................ 25 0 20 0.20 4 0 4 0 0 0 0
............................................................................................................................................................TCAGGTGATGAGTAAGCAGAACGG....................................................................... 24 0 20 0.15 3 1 2 0 0 0 0
............................................................................................................................TGTCGCTTTGACTGTTCTTGTATAAT..................................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0
......................................................................GTGTGTGTGGATAGCAATTCAAG.............................................................................................................................................................. 23 0 20 0.15 3 0 0 0 3 0 0
.......................................................................................................................................................................GTAAGCAGAACGGCCAACCCCTAGT........................................................... 25 0 20 0.10 2 1 0 1 0 0 0
...................................................................................................................................TTGACTGTTCTTGTATAATGAGATGT.............................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................TGACTGTTCTTGTATAATGAGATGT.............................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
.........................................................................................................................................................................AAGCAGAACGGCCAACCCCTAGTAA......................................................... 25 0 20 0.10 2 0 0 2 0 0 0
.......................................................................TGTGTGTGGATAGCAATTCAAGGT............................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................................................................................GGTCGCCCAATCTCATTG............................... 18 3 20 0.05 1 1 0 0 0 0 0
......................................CGATCGAAATCTTAGGTGTTAAACATA.......................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
...........................................GAAATCTTAGGTGTTAAACATACGTGT..................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 1
....................................................................................................................GGTTAATCTGTCGCTTTGACT.................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................TGTGTGTGTGTGGATAGCAATTC................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
.................................................................TGTGTGTGTGTGTGGATAGCAATTC................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TGATGAGTAAGCAGAACGGCCAAT.................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................GTTAATCTGTCGCTTTGACTGTTCT............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................TGTTCTTGTATAATGAGATGTCAGGTG........................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................AGAACGGCCAACCCCTAGTAA......................................................... 21 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................TGAGTAAGCAGAACGGCCAAC.................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
...................................GGATGATCGAAGTCTTAGGTGTT................................................................................................................................................................................................. 23 1 20 0.05 1 0 0 1 0 0 0
...................................GGATGATCGAAATCTTAGGTGTTAAAC............................................................................................................................................................................................. 27 0 20 0.05 1 0 0 1 0 0 0
.......................................................................TGTGTGTGGATAGCAATTCATGGT............................................................................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0
....................................GATGATCGAAATCTTAGGTGTTAA............................................................................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0
.....................................................................TGTGTGTGTGGATAGCAATTCAAGGT............................................................................................................................................................ 26 0 20 0.05 1 0 0 1 0 0 0
................................TATGGATGATCGAAATCTTAGGTGTT................................................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................AGGTGATGAGTAAGCAGA........................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................GATGAGTAAGCAGAACGGCCAACCC................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
............................................................................GTGGATAGCAATTCAAGGAGTTTACAT.................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................CTGTCGCTTTGACTGTTCTTGTATAATG.................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
......................................................................GTGTGTGTGGATAGCAATTCAAGGT............................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................TTTGACTGTTCTTGTATAATGAGAT................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
....................................GATGATCGAAATCTTAGGTGTTAAACAT........................................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
.........................................................................TGTGTGGATAGCAATTCAAGTT............................................................................................................................................................ 22 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................GTCGCTTTGACTGTTCTTGTATAAT..................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........................ATAAAAGATATGGATCATCGAAATCTT........................................................................................................................................................................................................ 27 1 20 0.05 1 0 0 1 0 0 0
..............................................................ATACGTGTGTGTGTGTGGATAGCAATT.................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................TGATGAGTAAGCAGAACGGCCAACCCC............................................................... 27 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................AGTAAGCAGAACGGCCGACCCCTAG............................................................ 25 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................TTTTGACTGTTCTTGTATAATGAGATG............................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
..............................................................................GGATAGCAATTCAAGGTGTTTACATTT.................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
..............................GATATGGATGATCGAAATCTTAGGT.................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
......................................................................GTGTGTGTGGATAGCAATT.................................................................................................................................................................. 19 0 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................GTCGCTTTGACTGTTCTTGTATAATGA................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.......................................................................TGTGTGTGGATACCAATTCAAGGT............................................................................................................................................................ 24 1 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................ATAATGAGATGTCAGGTGATGAGTAAG............................................................................... 27 0 20 0.05 1 0 0 1 0 0 0
.........................................................................CGTGTGGATAGCAATTCAAGGTGTTT........................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
..........................................................................GTGTGGATAGCAATTCAAGGTGTTT........................................................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0 0
........................................ATCGAAGTCCTAGGTGTTGA............................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
.......................................................................................................................................................................GTAAGCAGAACGGCCAACCCCTATT........................................................... 25 1 20 0.05 1 0 1 0 0 0 0
........................ATAAAAGATATGGATGATCGAAAT........................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................TTGACTGTTCTTGTATAATGAGACGT.............................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................CCAGGTGATGAGTAAGCAGAACG........................................................................ 23 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................ATCTGTCGCTTTGACTGCTCTTGTAT........................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
........................................................................GTGTGTGGATAGCAATTCAAGTT............................................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0
...CGTGGATATAACAGTAGAAAT................................................................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................TGACTTTTCTTGTATAATGAGATGTC............................................................................................. 26 1 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................................................ATGTCAGGTGATGAGTAAGC.............................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................CTGTCGCTTTGACTGTTCGTGTATAAT..................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................TCGCTTTGACTGTTCTTGTAT........................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................AGATGTCAGGTGCTGAGTAAGCAGA........................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
..........................................................................................................................CCTGTCGCTTTGACTGTTCTTGTAT........................................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................GTATAATGAGATGTCAGGTGA....................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................ATCTGTCGCTTTGACTGGTCTTGTAT........................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
................................................CTTAGGTGTTAAACATACGTGTGTGT................................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................................................GGTGATGAGTAAGCAGAACG........................................................................ 20 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................AAGCAGAACGGCCAACCCCTA............................................................. 21 0 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................ATCTGTCGCTTTGACTGTTCTTGTATAA...................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
........................................................................GTGTGTGGATAGCAATTCAAGGTTT.......................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
........................................................................GTGTGTGGATAGCAATTCAA............................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................................................................GAGTAAGCAGAACGGCCAACCCCTAGT........................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................AGATGTCAGGTGATGAGTAAGCAGA........................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.........................................................................TGTGTGGATAGCAATTCAAGGT............................................................................................................................................................ 22 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................TGACTGTTCTTGTATAATG.................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................GACGTCAGGTGATGAGTAAGCAGAAC......................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................TCAGGTGATGAGTAAGCAGA........................................................................... 20 0 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:552641-552891 - dan_1690 AAGTCAC---------------CTATATTGTCAT------CTTTATATT-TTCT-------ATA--CC---------------------TACTAGCTTTA-GAATCCACAA--------------------------TTTGTAT-----------G--CACACACACACACCTAT----------CGTTAAG--TTCCAC---AA---------------------------ATGTA-AATTTTC-TTAGTACCAATTAGACAGCGAAACTGACAAGAACATATTACTCTACAGTCCAC-TAC---------------TCATTCGTCTT---GCCGGTTGGGGATCATTCA----------TCAA-GCCAAGCGGATTTGAGTA--ACTTGTTCGCCAACAGGAAGCCTCAAAGTATCT
droBip1 scf7180000393926:4544-4755 - AAGT------------------T----TTGCCAT------CTTTATATT-TT---------------------------------------TGACTTAAG-ATAAAAACAA----------------------------TGTGT-----------ACACA-----------CTAG----------AAATAAG--CACCT---ATGGCAACAT-------------------TG--CAAATTTTCTTAAAGTACCAATAAGACAGCGAAACACGCAAGAACAATAAAACATACAGTCCAC-TACAAAAAAAGGCTCTACGCA----------------TTTAGGATCAAACT----------T----------TAAATTTGAGAG--ACTAGTTCGCGTAGAAAAAG-------------
droKik1 scf7180000302817:690959-691038 - GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAATCAATAGCGTCTTTGAGCCTG-GTCAGGCGGATTTAAGTG--GCATTTTTGGCAAGAACTCACCACAAAGGATAT
droFic1 scf7180000453778:86718-86797 + GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAATCAATCGCATATTTGAACCTG-ACCAAGCGGATTTGAGTG--GCCTGTTTGCCGATAAAACACCTCAAAGAATTT
droEle1 scf7180000491025:55146-55420 + AAATCACCTTATAATTTTTGGCGTATAACACC-TCGCTATCCTTATATT-TTGAGAAGACGT--TTTCTCTTATTTTAGTTCACATGTATT--------------------------------------------------------------------------------------CTTTTTATCGAA-------------ATGGCAACGCCGCAACTATAGCGTCTT-TATTGAA-ATTCAAT-TCAGTACCAATAAGACGTCGCAACTTGCAATAATACAA--AAATACAGTCCTTCAAC---------------CCACTTGTCTTATTCCTGATTAACTATCATTGG----------TCCAAA-CCAGTCTA---TAGAGGCAATTGCTTTATTAGACGAAGCGTCAA-------
droRho1 scf7180000777378:10309-10475 + AATG--------------------------CCAT------CTCTATTCTATTCT-------A--TATA---------------------TTTAATCTATG-TACAAGAAAACATGTATA---------------------------------------TA-----------ATATCT-TT--------TCA--GTT--TC---TGGCAACGCCGCTAAGACGGCGTCATATTGCGAA-ATTCATT-TCAGTGTCAAATAGGCTTTGCAACTGACAAGAATAAAA-TTAATACAGTCCAC------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301219:5301-5456 + AGGC------------------GCATAATGCCAT------CATTATCC-----T-------ATA--TA---------------------TTCAATCTATG-TAAATGAAAAC--------------------------CGCTAT-----------A--TATCTATATACATATATCTTTTT----------TCGCC--TC---TG---------------------------GTGAA-ATTCAAC-TTATTATCAAATAGGCTTCGAAACTGGCAAGAATAAAAATTAATACAGTCCAC------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415293:1669-1867 - AGGC------------------GCATAATGCCAT------CTCCATTCCTT--T-------ATATAC----------------------TTTAATCTATG-TACAAGAAAAC--------------------------ATGTAT-----------A--CATACAAAAAA--ATCTCTCTT--------TGA--GTT--TC---TGGCAACGCCGCTAATACGGCGTCGTATTGCGAA-ATTCAGT-TCAGTATCGAATAGGCTTCGCAACTGGCATGAATAAAATTTATTACAGTACAC----------------------------------------------------------------------------------------------------------ACACACGCAACTTG
droEug1 scf7180000407544:23149-23313 - TGGC------------------TCATATTGCCAT------CTTTATATT-TTCT-------ATA--CC---------------------CATTAGAATTA-AGAACCA-----------------------CCTATCAATGTAT-----------ACACA-----------CTAT----------CGATAAG--TACCACATATGGCAACAT-------------------TG--AAAATTTTCT-TCAGTATCAATTAGACAAGGAAACAATTAAGAACAAT--------CAGTCTCTCTAC---------------GCA------------------------------------------------------------------------------------------------TT
dm3 chr2R:6828078-6828126 - CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCGAAATGAAAACACCACAAAAGATTT
droSim2 2r:7569151-7569199 - CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCT--ATCTTTTCGAAATGAAAACACCACAAAAGATTT
droSec2 scaffold_1:4418414-4418462 - CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCGAAATGAAAACACCACAAAAGATTT
droYak3 2R:2296532-2296580 + CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTGAGTG--GCGTTTTTGAAAAGAAATCACCACAAAGGATTT
droEre2 scaffold_4845:18946487-18946535 + CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTGAGTG--GTGTTTTCGAAAAGAAATCGCCACAAAGAATTT
dp5 Unknown_group_342:10884-11033 - AAGC------------------GAAGAA--CCAT------CGCCA----------------------------------------------------------AAAGAGAACAAGAAGAGAATTGATGGGACCAAAATTTGTATACACACATACT----------------------CTTA----------C-----------------CGCCGCTGCGACGGCAT----------------TTT-TCAGTACCAAATAGACATCGAACTGGACAAGAACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TA
droPer2 scaffold_107:50366-50515 - AAGC------------------GAAGAA--CCAT------CGCCA----------------------------------------------------------AAAGAGAACAAGAAGAGAATTGATGAGACCAAAATTTGTATACACACATACT----------------------CTTA----------T-----------------CGCCGCTGCGACGGCAT----------------TTT-TCAGTACCAAATAGACATCGAACTGGACTAGAACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TA
droWil2 scf2_1100000004510:3147684-3147808 - CAAA------------------AATATA--TAAT------CTTTACTC--------------------------------------------------------------------------------------AATTTTCTTTATCCATTTAAT----------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGGCGTAACGCGCATTTTTGAACCCA-ATCGTGCTGATTTAACTG--GTCTTTTCGCCAAGCAATCGAATCAAGTGATTT
droVir3 scaffold_12823:330326-330436 + ACAA------------------GAAGAT----AT------TAATCTATA-AA---------------------------------------TCGT---------------------------------------------------------------------------------------------------------------AAC------------------------------------------------------------------------------------------------------------------------------AGTTGGGAATAAAGCGTATCTTTGAGAAAA-GCGCCGCTGACTTAAGTG--GACTGTTTGCTAAGAAGTCGCCCCAGTTGATCA
droMoj3 scaffold_6258:36687-36830 + TTAT------------------CATT--------------TTTTAGCATATTTG-------T--CATTTTTTAGCATAATTTGTAGCTTTC-----ATTATTATCGGCGAAT--GAAGAGCCGCATCGAGATCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CGATAA-ACTTATG-TTAGTATTCAGTAAGCAAACGAACGGACAAG----------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_9069:2951-3035 + TGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGGGAGTAAGGCGCATCTTTGAGCCAG-GCGCCGCTGATCTGAGTA--GACTGTTTGCCAAAAAGTCGCCCCATCGCATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AAGTCAC---------------CTATATTGTCAT------CTTTATATT-TTCT-------ATA--CC---------------------TACTAGCTTTA-GAATCCACAA--------------------------TTTGTAT-----------G--CACACACACACACCTAT----------CGTTAAG--TTCCAC---AA---------------------------ATGTA-AATTTTC-TTAGTACCAATTAGACAGCGAAACTGACAAGAACATATTACTCTACAGTCCAC-TAC---------------TCATTCGTCTT---GCCGGTTGGGGATCATTCA----------TCAA-GCCAAGCGGATTTGAGTA--ACTTGTTCGCCAACAGGAAGCCTCAAAGTATCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................TT---GCCGGTTGGGGATCATTCA----------TC........................................................2311.001000001
...............................................................................................................................................................................................................................................................................................TCTACAGTCCAC-TAC---------------TCATTCGTCTT---G......................................................................................27200.75150000015
...............................................................................................................................................................................................................................................................................................TCTACAGTCCAC-TAC---------------TCATTCGTC............................................................................................24200.255000005
................................................................................................................................................................................................................................................................................................CTACAGTCCAC-TAC---------------TCATTCGTCTT---.......................................................................................25200.255100004
...........................................................................................................................................................................................................................................................ACCAATTAGACAGCGAAACTG...................................................................................................................................................21200.204000004
............................................................................................................................................................................................................................................................................................................TAC---------------TCATTCGTCTT---GCCGGTTGG..............................................................................23200.204400000
..............................................................................................................................................................................................................................................................................................................................TCATTCGTCTT---GCCGGTTGGGGA...........................................................................23200.153300000
...............................................................................................................................................................................................................................................................................................TCTACAGTCCAC-TAC---------------TCATTCGTCTT---.......................................................................................26200.153300000
.................................................................................................................................................................................................................................................................................................TACAGTCCAC-TAC---------------TCATTCGTCTT---G......................................................................................25200.153300000
.............................................................................................................................................................................................................................................................................................ACTCTACAGTCCAC-TAC---------------TCATTCGTCTT---.......................................................................................28200.102000002
....................................................................................................................................................................................................................................................................................GAACATATTACTCTACAGTCCAC-TAC---------------.....................................................................................................26200.102200000
...........................................................................................................................................................................................................................................................................................TTACTCTACAGTCCAC-TAC---------------TCATTCGTC............................................................................................28200.102020000
............................................................................................................................................................................................................................................................................................TACTCTACAGTCCAC-TAC---------------TCATTCGTC............................................................................................27200.102000002
...................................................................................................................................................................................................................................................................................................................................CGTCTT---GCCGGTTGGGGATCAT.......................................................................22200.051100000
..........................................................................................................................................................................................................................................................................................................C-TAC---------------TCATTCGTCTT---GCCGGT.................................................................................21200.051000001
.........................................................................................................................................TTTGTAT-----------G--CACACACACACACCTAT----------CGT.......................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................................................................TTACTCTACAGTCCAC-TAC---------------TCATT................................................................................................24200.051100000
.......................................................................................................................................................................................................................................................................................CATATTACTCTACAGTCCAC-TAC---------------TCA..................................................................................................26200.051100000
................................................................................................................................................................................................................................................................................................................................ATTCGTCTT---GCCGGTTGGGGAT..........................................................................22200.051100000
.....................................................................................................................................................................................................................................................................................AACATATTACTCTACAGTCCAC-TAC---------------TC...................................................................................................27200.051010000
..........................................................................................................................................................................................................................................................................................ATTACTCTACAGTCCAC-TAC---------------TCATTCGT.............................................................................................28200.051000001
...............................................................................................................................................................................................................................................................................................TCTACAGTCCAC-TAC---------------TCATTCGT.............................................................................................23200.051000001
..............................................................................................................................................................................................................................................................................................CTCTACAGTCCAC-TAC---------------TCATTCG..............................................................................................23200.051100000
..........................................................................................................CACAA--------------------------TTTGTAT-----------G--CACACACACACACCTA.....................................................................................................................................................................................................................................................29200.051010000
.................................................................................................................................................................................................................................................................................................TACAGTCCAC-TAC---------------TCATTCGTCTT---GC.....................................................................................26200.051001000
.....................................................................................................................................................................................................................................................................CAGCGAAACTGACAAGAACA..........................................................................................................................................20200.051000100
..........................................................................................................................................................................CCTAT----------CGTTAAG--TTCCAC---AA---------------------------ATGTA-AA...................................................................................................................................................................................27200.051000001
.................................................................................................................................................................................................................................................................TAGACAGCGAAACTGACAAG..............................................................................................................................................20200.051000001
...........................................................................................................................................................................................................................................................................................TTACTCTACAGTCCAC-TAC---------------TCA..................................................................................................22200.051100000
................................................................................................................................................................................................................................................TTTTC-TTAGTACCAATTAGACAGCGAA.......................................................................................................................................................27200.051100000
.......................................................................................................ATCCACAA--------------------------TTTGTAT-----------G--CAC..................................................................................................................................................................................................................................................................19200.051010000
...............................................................................................................................................................................................................................................................................................TCTACAGTCCAC-TAC---------------TCATTCGTCTT---T......................................................................................27200.051000001
.................................................................................................................................................................................................................................................................................................TACAGTCCAC-TAC---------------TCATTCGT.............................................................................................21200.051000001
.............................................................................................................................................................................................AAG--TTCCAC---AA---------------------------ATGTA-AATTTTC-TC...........................................................................................................................................................................25200.051010000
................................................................................................................................................................................................................................................................................................................................ATTCGTCTT---GCCGGTTGGGGATC.........................................................................23200.051100000
........................................................................................................................................................................................................................................................................................ATATTACTCTACAGTCCAC-TAC---------------TCAT.................................................................................................26200.051100000
..............................................................................................................................................................................................................................................................................................................................TCATTCGTCTT---GCCGGTTGGGG............................................................................22200.051000001
..........................................................................................................................................................................................................................................................................................................C-TAC---------------TCATTCGTCTT---GCCGGTTGGGG............................................................................26200.051100000
...................................................................................................................................................................................................................................................................................................................................CGTCTT---GCCGGTTGGGGATC.........................................................................20200.051000001
.........................................................................................................................................................................................................................................................................................TATTACTCTACAGTCCAC-TAC---------------TCAT.................................................................................................25200.051100000
............................................................................................................................................................................................................................................................................................TACTCTACAGTCCAC-TAC---------------TCATTCGTCTT---.......................................................................................29200.051000001
.........................................................................................................................................................................................................................................................................................TATTACTCTACAGTCCAC-TAC---------------TCATT................................................................................................26200.051100000
.............................................................................................................................................TAT-----------G--CACACACACACACCTAT----------CGTT......................................................................................................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................................................................................TACTCTACAGTCCAC-TAC---------------TCATTCGT.............................................................................................26200.051100000
................................................................................................................................................................................................................................................................................................................................ATTCGTCTT---GCCGGTTGGGGATCATT......................................................................26200.051000100
.............................................................................................................................................................................................................................................................................................ACTCTACAGTCCAC-TAC---------------TCATT................................................................................................22200.051100000
droBip1
AAGT------------------T----TTGCCAT------CTTTATATT-TT---------------------------------------TGACTTAAG-ATAAAAACAA----------------------------TGTGT-----------ACACA-----------CTAG----------AAATAAG--CACCT---ATGGCAACAT-------------------TG--CAAATTTTCTTAAAGTACCAATAAGACAGCGAAACACGCAAGAACAATAAAACATACAGTCCAC-TACAAAAAAAGGCTCTACGCA----------------TTTAGGATCAAACT----------T----------TAAATTTGAGAG--ACTAGTTCGCGTAGAAAAAG-------------SizeHit CountTotal NormTotal
No Reads
droKik1
GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAATCAATAGCGTCTTTGAGCCTG-GTCAGGCGGATTTAAGTG--GCATTTTTGGCAAGAACTCACCACAAAGGATATSizeHit CountTotal NormTotal
No Reads
droFic1
GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAATCAATCGCATATTTGAACCTG-ACCAAGCGGATTTGAGTG--GCCTGTTTGCCGATAAAACACCTCAAAGAATTTSizeHit CountTotal NormTotal
No Reads
droEle1
AAATCACCTTATAATTTTTGGCGTATAACACC-TCGCTATCCTTATATT-TTGAGAAGACGT--TTTCTCTTATTTTAGTTCACATGTATT--------------------------------------------------------------------------------------CTTTTTATCGAA-------------ATGGCAACGCCGCAACTATAGCGTCTT-TATTGAA-ATTCAAT-TCAGTACCAATAAGACGTCGCAACTTGCAATAATACAA--AAATACAGTCCTTCAAC---------------CCACTTGTCTTATTCCTGATTAACTATCATTGG----------TCCAAA-CCAGTCTA---TAGAGGCAATTGCTTTATTAGACGAAGCGTCAA-------SizeHit CountTotal NormTotal
No Reads
droRho1
AATG--------------------------CCAT------CTCTATTCTATTCT-------A--TATA---------------------TTTAATCTATG-TACAAGAAAACATGTATA---------------------------------------TA-----------ATATCT-TT--------TCA--GTT--TC---TGGCAACGCCGCTAAGACGGCGTCATATTGCGAA-ATTCATT-TCAGTGTCAAATAGGCTTTGCAACTGACAAGAATAAAA-TTAATACAGTCCAC------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGGC------------------GCATAATGCCAT------CATTATCC-----T-------ATA--TA---------------------TTCAATCTATG-TAAATGAAAAC--------------------------CGCTAT-----------A--TATCTATATACATATATCTTTTT----------TCGCC--TC---TG---------------------------GTGAA-ATTCAAC-TTATTATCAAATAGGCTTCGAAACTGGCAAGAATAAAAATTAATACAGTCCAC------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGGC------------------GCATAATGCCAT------CTCCATTCCTT--T-------ATATAC----------------------TTTAATCTATG-TACAAGAAAAC--------------------------ATGTAT-----------A--CATACAAAAAA--ATCTCTCTT--------TGA--GTT--TC---TGGCAACGCCGCTAATACGGCGTCGTATTGCGAA-ATTCAGT-TCAGTATCGAATAGGCTTCGCAACTGGCATGAATAAAATTTATTACAGTACAC----------------------------------------------------------------------------------------------------------ACACACGCAACTTGSizeHit CountTotal NormTotal
No Reads
droEug1
TGGC------------------TCATATTGCCAT------CTTTATATT-TTCT-------ATA--CC---------------------CATTAGAATTA-AGAACCA-----------------------CCTATCAATGTAT-----------ACACA-----------CTAT----------CGATAAG--TACCACATATGGCAACAT-------------------TG--AAAATTTTCT-TCAGTATCAATTAGACAAGGAAACAATTAAGAACAAT--------CAGTCTCTCTAC---------------GCA------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
dm3
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCGAAATGAAAACACCACAAAAGATTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCGAA......................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000010110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCG--ATCTTTTCGAAATGAAAACA.............2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGCG--ATCTTTTCGAAATGAAAACA.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGCG--ATCTTTTCGAAATGAAAACAC............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCG........................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGCG--ATCTTTTCGAAATGAAAACACCAC.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCGAAA.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAAATGAAAACACCACAAAAGA...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCT--ATCTTTTCGAAATGAAAACACCACAAAAGATTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGATTTGAGCG--ATCTTTTCGAAATGAAAACACCACAAAAGATTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTGAGTG--GCGTTTTTGAAAAGAAATCACCACAAAGGATTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTGAGTG--GTGTTTTCGAAAAGAAATCGCCACAAAGAATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
AAGC------------------GAAGAA--CCAT------CGCCA----------------------------------------------------------AAAGAGAACAAGAAGAGAATTGATGGGACCAAAATTTGTATACACACATACT----------------------CTTA----------C-----------------CGCCGCTGCGACGGCAT----------------TTT-TCAGTACCAAATAGACATCGAACTGGACAAGAACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGA..................................................................................................................................................26839.00312112120110016620
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGG...................................................................................................................................................25921.561940126200006600
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTG....................................................................................................................................................24910.3393077000001600
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACT.....................................................................................................................................................23109.6096082200011100
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGAC.................................................................................................................................................2786.38510251500001100
..........................................................................................................GAGAACAAGAAGAGAATTGATGGG.................................................................................................................................................................................................................................................................................................2425.00100500000050
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAAC......................................................................................................................................................22103.403402610000700
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATACAGTC...........................................................................................................................2692.562300000002030
...........................................................................................................................................TGTATACACACATACT----------------------CTTA----------C-----------------CGCCGC............................................................................................................................................................................................................2722.5050100000400
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGACA................................................................................................................................................2881.881501300000200
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACT.....................................................................................................................................................22101.601601600000000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGAA.................................................................................................................................................2781.25100310000600
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTG....................................................................................................................................................2391.111001000000000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGGA..................................................................................................................................................2581.0080700000100
..........................................................................................................GAGAACAAGAAGAGAATTGATGG..................................................................................................................................................................................................................................................................................................2321.0020200000000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGG...................................................................................................................................................2490.6760600000000
.........................................................................................................................................TTTGTATACACACATACT----------------------CTTA----------C-----------------CGCCG.............................................................................................................................................................................................................2820.5010100000000
..........................................................................................................GAGAACAAGAAGAGAATTGATGGGA................................................................................................................................................................................................................................................................................................2520.5010100000000
..........................................................................................................GAGAACAAGAAGAGAATTGATGGGAC...............................................................................................................................................................................................................................................................................................2620.5010100000000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGA........................................................................................................................................................20100.4040400000000
.......................................................................................................................................................................................................................TGCGACGGCAT----------------TTT-TCAGTACCA....................................................................................................................................................................2350.4020200000000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAAC......................................................................................................................................................23100.4040100000300
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGACAA...............................................................................................................................................2980.3830300000000
.........................................................................................................................................................................................................................................................GTACCAAATAGACATCGAACTGGA..................................................................................................................................................2480.3830200000100
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATACAGTCC..........................................................................................................................2790.3330000000300
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATACAG.............................................................................................................................2490.3330000000300
.................................................................................................................................................................................................................................................................................CAAGAACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TA27120.3340000000400
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACA.....................................................................................................................................................23100.3030300000000
....................................................................................................................................................................................................................................................T-TCAGTACCAAATAGACATCGAAC......................................................................................................................................................24100.3030300000000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAACTGGA..................................................................................................................................................2780.2520000000200
.................................................................................................................................................................................................................................................................................CAAGAACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------..25120.2530100000200
..................................................................................................................................................................................................................................................................AGACATCGAACTGGACAAGAACA..........................................................................................................................................2380.2520000000020
.................................................................................................................................................................................................................................................................TAGACATCGAACTGGACAAGA.............................................................................................................................................2180.2520000000020
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGAG.................................................................................................................................................2780.2520000000200
.........................................................................................................................................................................................................................................................GTACCAAATAGACATCGAACTGG...................................................................................................................................................2390.2220200000000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAACTG....................................................................................................................................................2590.2220200000000
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATAC...............................................................................................................................2290.2220000000200
......................................................................................................................................................................................................................CTGCGACGGCAT----------------TTT-TCAGTACCAAA..................................................................................................................................................................2650.2010000000100
.......................................................................................................................................................................................................................TGCGACGGCAT----------------TTT-TCAGTACCAAAT.................................................................................................................................................................2650.2010000000100
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAA.......................................................................................................................................................21100.2020200000000
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATA................................................................................................................................21100.2020000000200
..........................AA--CCAT------CGCCA----------------------------------------------------------AAAGAGAACAAGAAGA............................................................................................................................................................................................................................................................................................................2750.2010000000100
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAA.......................................................................................................................................................20110.1820200000000
..............................................................................................................................................................................................................................................................AAATAGACATCGAACTGGACAAG..............................................................................................................................................2380.1310100000000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGGAC.................................................................................................................................................2680.1310100000000
...........................................................................................................................................................................................................................................................ACCAAATAGACATCGAACTGGACAA...............................................................................................................................................2580.1310000000010
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGACC................................................................................................................................................2880.1310000000100
................................................................................................................................................................................................................................................................ATAGACATCGAACTGGACAAGA.............................................................................................................................................2280.1310000000100
..............................................................................................................................................................................................................................................................AAATAGACATCGAACTGGACAAGAACA..........................................................................................................................................2780.1310000000100
.........................................................................................................................................................................................................................................................GTACCAAATAGACATCGAACTGGACA................................................................................................................................................2680.1310100000000
.............................................................................................................................................................................................................................................................CAAATAGACATCGAACTGGACAAGAAC...........................................................................................................................................2780.1310000000100
............................................................................................................................................................................................................................................................CCAAATAGACATCGAACTGGACAA...............................................................................................................................................2480.1310000000100
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGGACA................................................................................................................................................2780.1310100000000
.............................................................................................................................................................................................................................................................CAAATAGACATCGAACTGGA..................................................................................................................................................2080.1310100000000
.....................................................................................................................................................................................................................................................................CATCGAACTGGACAAGAACAAAA-......................................................................................................................................2380.1310000000100
............................................................................................................................................................................................................................................................CCAAATAGACATCGAACTGGACAAG..............................................................................................................................................2580.1310000000100
............................................................................................................................................................................................................................................................................CTGGACAAGAACAAAA-TAAATACAGTC...........................................................................................................................2790.1110010000000
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATACAGT............................................................................................................................2590.1110000001000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGT..................................................................................................................................................2690.1110100000000
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAATACAGTCA..........................................................................................................................2790.1110000000100
.........................................................................................................................................................................................................................................................................GAACTGGACAAGAACAAAA-TAAATACAG.............................................................................................................................2890.1110100000000
............................................................................................................................................................................................................................................................CCAAATAGACATCGAACTGG...................................................................................................................................................20100.1010100000000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAAA......................................................................................................................................................23100.1010100000000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAACT.....................................................................................................................................................24100.1010100000000
...........................................................................................................................................................................................................................................................ACCAAATAGACATCGAACTGG...................................................................................................................................................21100.1010100000000
....................................................................................................................................................................................................................................................T-TCAGTACCAAATAGACATCG.........................................................................................................................................................21110.0910100000000
....................................................................................................................................................................................................................................................T-TCAGTACCAAATAGACAT...........................................................................................................................................................19110.0910000000010
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCG.........................................................................................................................................................19110.0910100000000
.............................................................................................................................................................................................................................................................................TGGACAAGAACAAAA-TAAAA.................................................................................................................................20110.0910000000100
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATC..........................................................................................................................................................18110.0910100000000
..........................................................................................................GAGAACAAGAAGAGAA.........................................................................................................................................................................................................................................................................................................16120.0810000000100
.................................................................................................................................................................................................................................................................................CAAGAACAAAA-TAAATACAGTCCA.........................................................................................................................24120.0810000000010
......................................................................................................................................................................................................................................................................................ACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TT22130.0810100000000
........................................................................................................................................................................................................................................................................................AAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TA20140.0710100000000
....................................................................................................................................................................................................................................................................................GAACAAAA-TAAATACAGTCCA.........................................................................................................................21140.0710100000000
droPer2
AAGC------------------GAAGAA--CCAT------CGCCA----------------------------------------------------------AAAGAGAACAAGAAGAGAATTGATGAGACCAAAATTTGTATACACACATACT----------------------CTTA----------T-----------------CGCCGCTGCGACGGCAT----------------TTT-TCAGTACCAAATAGACATCGAACTGGACTAGAACAAAA-TAAATACAGTCCAC----------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGA..................................................................................................................................................26133.00399291000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGGAC.................................................................................................................................................27132.232919100000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGG...................................................................................................................................................25142.00280280000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACT.....................................................................................................................................................23161.38224180000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTG....................................................................................................................................................24141.14160160000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGG...................................................................................................................................................24140.365050000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAAC......................................................................................................................................................22160.315140000
.......................................................................................................AAAGAGAACAAGAAGAGAAT........................................................................................................................................................................................................................................................................................................20110.182020000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTG....................................................................................................................................................23140.142020000
...........................A--CCAT------CGCCA----------------------------------------------------------AAAGAGAA....................................................................................................................................................................................................................................................................................................................18110.091010000
.......................AAGAA--CCAT------CGCCA----------------------------------------------------------AAAGAGA.....................................................................................................................................................................................................................................................................................................................21110.091010000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAACTGGAC.................................................................................................................................................28120.081010000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGGAC.................................................................................................................................................26130.081010000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACTGGA..................................................................................................................................................25130.081010000
..................................................................................................................................................................................................................................................TTT-TCAGTACCAAATAGACATCGAAC......................................................................................................................................................26130.081100000
..........................................................................................................................................................................................................................................................TACCAAATAGACATCGAACTGG...................................................................................................................................................22140.071010000
.......................................................................................................AAAGAGAACAAGAAGAGA..........................................................................................................................................................................................................................................................................................................18150.071010000
......................................................................................................................................................................................................................................................TCAGTACCAAATAGACATCGAAC......................................................................................................................................................23150.071010000
....................................................................................................................................................................................................................................................T-TCAGTACCAAATAGACATCGAAC......................................................................................................................................................24150.071010000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACTGA...................................................................................................................................................25150.071100000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAACT.....................................................................................................................................................22160.061010000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGA........................................................................................................................................................20160.061010000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATC..........................................................................................................................................................18160.061010000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAAC......................................................................................................................................................21170.061010000
........................................................................................................................................................................................................................................................AGTACCAAATAGACATCGAAAA.....................................................................................................................................................22170.061010000
.......................................................................................................................................................................................................................................................CAGTACCAAATAGACATCGAACC.....................................................................................................................................................23200.051100000
droWil2
CAAA------------------AATATA--TAAT------CTTTACTC--------------------------------------------------------------------------------------AATTTTCTTTATCCATTTAAT----------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGGCGTAACGCGCATTTTTGAACCCA-ATCGTGCTGATTTAACTG--GTCTTTTCGCCAAGCAATCGAATCAAGTGATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACAA------------------GAAGAT----AT------TAATCTATA-AA---------------------------------------TCGT---------------------------------------------------------------------------------------------------------------AAC------------------------------------------------------------------------------------------------------------------------------AGTTGGGAATAAAGCGTATCTTTGAGAAAA-GCGCCGCTGACTTAAGTG--GACTGTTTGCTAAGAAGTCGCCCCAGTTGATCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................AGTG--GACTGTTTGCTAAGAAGT...............2212.002000000000020000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GAATAAAGCGTATCTTTGAGA.........................................................2111.001000000000010000000000000000000000000000000000000000000000000000
droMoj3
TTAT------------------CATT--------------TTTTAGCATATTTG-------T--CATTTTTTAGCATAATTTGTAGCTTTC-----ATTATTATCGGCGAAT--GAAGAGCCGCATCGAGATCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CGATAA-ACTTATG-TTAGTATTCAGTAAGCAAACGAACGGACAAG----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................GTAGCTTTC-----ATTATTATCGGCGAAT--GA...............................................................................................................................................................................................................................................................................................................27200.306400002
..........................................................................................................................................................................................................................................................TATTCAGTAAGCAAACGAACGGACAAG----------------------------------------------------------------------------------------------------------------------------------------------27200.153300000
.................................................................................................................................GATCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CGATA.......................................................................................................................................................................................24200.102200000
..................................................................................GTAGCTTTC-----ATTATTATCGGCGAAT--.................................................................................................................................................................................................................................................................................................................25200.102200000
..........................................................................................................................................................................................................................................................TATTCAGTAAGCAAACGAACGG...................................................................................................................................................22200.102200000
..........................................................................................................................................................................................................................................................TATTCAGTAAGCAAACGAACGGA..................................................................................................................................................23200.102200000
..................................................................................GTAGCTTTC-----ATTATTATCGGCGAA....................................................................................................................................................................................................................................................................................................................24200.051100000
................................................................................................................................AGATCAA------------------------------------TTAT----------CGGTTAA--G................................................................................................................................................................................................................................19200.051100000
.............................................................................................................................................................................................................................................................TCAGTAAGCAAACGAACGGACAAG----------------------------------------------------------------------------------------------------------------------------------------------24200.051100000
..............................................................................................................................................................................................................................................................CAGTAAGCAAACGAACGGACAAG----------------------------------------------------------------------------------------------------------------------------------------------23200.051100000
..................................................................................................TATTATCGGCGAAT--GAAGAGC..........................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................ATTATTATCGGCGAAT--GAAGA............................................................................................................................................................................................................................................................................................................21200.051000001
............................................................................................................................................................................................................................................................TTCAGTAAGCAAACGAACGGACAAG----------------------------------------------------------------------------------------------------------------------------------------------25200.051100000
................................................................................................................................................................................................................................................TTATG-TTAGTATTCAGTAAGCAAACGAAC.....................................................................................................................................................29200.051100000
...............................................................................................................................GAGATCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CGATA.......................................................................................................................................................................................26200.051100000
................................................................................................................................AGATCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CGATAA-.....................................................................................................................................................................................26200.051000010
..........................................................................................................................................................................................................................................................TATTCAGTAAGCAAACGAACGGACAA...............................................................................................................................................26200.051000001
...................................................................................TAGCTTTC-----ATTATTATCGGCGAAT--.................................................................................................................................................................................................................................................................................................................24200.051100000
...................................................................................................................................TCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CGAT........................................................................................................................................................................................21200.051100000
...................................................................................................................................................................................................T-----------------------------------CGATAA-ACTTATG-TTAGTATTCAG..................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................................TATG-TTAGTATTCAGTAAGCAAACGAAC.....................................................................................................................................................28200.051000010
.............................................................................................................................................................................................................................................................TCAGTAAGCAAACGAACGGAC.................................................................................................................................................21200.051100000
.............................................................................................................................TCGAGATCAA------------------------------------TTAT----------CGGTTAA--GT-----------------------------------CG..........................................................................................................................................................................................25200.051100000
droGri2
TGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGGGAGTAAGGCGCATCTTTGAGCCAG-GCGCCGCTGATCTGAGTA--GACTGTTTGCCAAAAAGTCGCCCCATCGCATTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:48 AM