dan_1665

Name	Class	Family	Strand
Hoana1	DNA	hAT-hobo	+
Helitron-2N1_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTTTGGAAGAGGACGGTAGAAGTTTTCGCGACTTCAAAAACGAGCTTAAAGTAAGAAGTATTTTTATACCCTTGCAGAAGTTTTTAAAATTTTGGTTGAAAGTGTGAAACGCAGTGAAGAAGAAATCTCCGAACCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCTATCTATCTGTCTTTTTCTACGCAAAATAATCTCTCTGTTTTAAAGCTATCT ************************************************************************************************....((......((((....((......(((........................((((((((((.....)))))).))))...)))....))...)))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	M044 female body
.......................TTTCGCGACTTCAAAAACGAGC..............................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0
.TTTGGAAGAGGACGGTAGAAGT....................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0
......................................GACGAGCTTAAAGTAAGC...................................................................................................................................................................................................	18	2	7	0.14	1	0	1	0
..............................................................TATATACCCTTGCAGTACTTTTT......................................................................................................................................................................	23	3	7	0.14	1	1	0	0
...................................................................................................................................................................................TATGAGCATGTCCGTCTGTCTA..................................................	22	0	9	0.11	1	1	0	0
........................................................................................ATTTTGCTTGACAGTGTGAT...............................................................................................................................................	20	3	15	0.07	1	0	1	0
.........................TCGCGACTCCAAAAACAAAC..............................................................................................................................................................................................................	20	3	19	0.05	1	1	0	0
..................................................................................................AAAGTGTGAAACGCAGTGAAG....................................................................................................................................	21	0	20	0.05	1	0	0	1

GAAACCTTCTCCTGCCATCTTCAAAAGCGCTGAAGTTTTTGCTCGAATTTCATTCTTCATAAAAATATGGGAACGTCTTCAAAAATTTTAAAACCAACTTTCACACTTTGCGTCACTTCTTCTTTAGAGGCTTGGATATTTCATATATATAAGAACTAGTCCTAGTGGAGGACTCAGCTATACTCGTACAGGCAGACAGATAGATAGACAGAAAAAGATGCGTTTTATTAGAGAGACAAAATTTCGATAGA ************************************************....((......((((....((......(((........................((((((((((.....)))))).))))...)))....))...)))).))************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V105 male body	M044 female body	V055 head	V106 head	V039 embryo
......................................................................................................................................................................GGAGGACTCAGCTATACTCGTACAG............................................................	25	0	20	0.55	11	11	0	0	0	0	0
.................................................................................................ATTTCACACATTGCGTCACTTCTTCTT...............................................................................................................................	27	2	5	0.20	1	1	0	0	0	0	0
........................................................................................................................................................................................................................GATGCGTTTTACTATAGAG................	19	2	5	0.20	1	0	1	0	0	0	0
...........................................CGAATTCCATGCATCATAAA............................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	1	0	0
....................................................................................................................................................................................................CAGATCGATAGACAGAGAA....................................	19	2	10	0.10	1	1	0	0	0	0	0
............................................................................................................................................................................CTCAGCTATACTCGTACAGGCAGAC......................................................	25	0	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................AGGACTCAGCTATACTCGT................................................................	19	0	20	0.10	2	0	0	2	0	0	0
..............CCCTCTTAAAAAGCGGTGAA.........................................................................................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	1	0
.....................................................................................................................................GGATATTTCATATATATAAGAACTAGTC..........................................................................................	28	0	20	0.10	2	0	0	2	0	0	0
................................AAGTTGATGCTCGAATTTGA.......................................................................................................................................................................................................	20	3	14	0.07	1	0	1	0	0	0	0
...........................................................TAAAAATATGGGAACGTCTT............................................................................................................................................................................	20	0	15	0.07	1	0	1	0	0	0	0
.........................................................................................GAGACCAACTTTCACATTTT..............................................................................................................................................	20	3	16	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................................................................AAAAGATGCGGGTTATTA.....................	18	2	18	0.06	1	0	0	0	0	1	0
.............................................................................................................................AGACGCTTGGATATTTCATATAT.......................................................................................................	23	1	20	0.05	1	0	0	0	0	0	1
..................................................................................................TTTCACACTTTGAGTCACTTC....................................................................................................................................	21	1	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................AGTGGAGGACTCAGCTATACTC..................................................................	22	0	20	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................................AGAGAGCTAGATAAACAGAA......................................	20	3	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................GTGGAGGACTCAGCTATACTCGTACAG............................................................	27	0	20	0.05	1	0	0	0	0	0	1
..................................................................................................TTTCACACTTTGCGTCACTTC....................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................GAGGCTTGTATATTTCATATATAT.....................................................................................................	24	1	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................AGAGGCTTGGATATTTCATAT.........................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13260:1192282-1192532 -	dan_1665	CTTTGGAAGA------GGACGG-TAG-----A----------AGTTTTCGCGAC----TT-----------CAAAAA---------------------------------------CGAGCTTAAAGTAA-------------G--------------A-----AGTATTTTTA--TACCCTTG-----CA-----------------GAAGTTTTTAAAATTTTGGT--TG-----AAAGTG-----------------------TGAAACGCAGTGAAGAAGAAATCT-CCGAACCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGT-CTATC----TATCT----G----TC----TTTTTCTACGCAAAATAATCTCTCTG----TTTTAAAGCT-ATCT
droBip1	scf7180000395981:176-419 -		GATGTTG--------------G-TGTAATCT-TTAAAACTTT------------------------------CCATA--------------------------------------ATCAGTTTACACTCA-------------GT-------------A-----ATTATTTTTA--TACCCTTG-----CA-----------------GAGGGTATTATAATTTTGGT--CA-----AAAGTG-----------------------TGCAACGCAGTGAAGGAGACATCT-CCGACCCTATAAAGTAT----------ATATATTTTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGT-CCGTC----TGTCT----G----TC----TGTTTCTACGCGAACTAGTCTCTCAG----TTTTAAAGCT-AGCG
droKik1	scf7180000302378:5948-6183 -		TGACCA-----------------T---------TCA------AATTT-----------------------------------------------------------CTGTCGTTAAACAGCCT-----AA-------------AA-------------A---GTATTTTTTTTA--TACCCTTG-----CA-----------------GA--GTATTATAATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACCTTT-CCGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGT-CCGTC----TGTCT----G----TCTGTCTATTTCTACGCAAACTAGTCCCTCAG----TTTTAAAGCT-ATCT
droFic1	scf7180000453308:12152-12414 -		TATTAAAAAA------GTACAA-GCT-----A----------AGGTTCCTATAC----TG-----------TGAAAAAG-------T-------CA-TTGATGGTG----------------------A--------------------T-AC-----------AGAATTTTTA--TACCCTTG-----CAGA------GCAA-----AAGGGTATTATAATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACACCT-CAGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCACGATCAGAATCCAAATCCGTCTGTACGTCTGT-CCGTC----TGTCC----T----CCTGTCGGTTTCTATGTAAACTAGTCTCTCAG----TTTTAAAGCT-ATCT
droEle1	scf7180000488435:23290-23541 +		TTTTCTAAAA------GGATCG-CTT-----A----------AGTGTC-----------------------------------GCCTGAACGAGCGTTATAAGATT----------------------A--------------------T-------AA-----GAGATTTTTA--TACCCTTG-----CA-----------------GAGGGTATTATACTTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACATCT-CTGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAGCCATGTCCGTCTGT-CCGTC----CGTCT----G----TCCGTCCGTTTATATGCAAACTAGTCTCTCAG----TTTTAAAGCT-ATCT
droRho1	scf7180000776138:44696-44940 +		CTATAGACTA------GGAGTG-AGG-----A----------AGTTCTATCGATTTCATTTTTT-AGG--------------------------CAT-------------TGTT-------------------------------------ACAC----------AACTTTTTA--TACCCTTG-----CA-----------------GAGGGTATTATAATTTTGGT--CA-----AAAGTG-----------------------TGCAACGCAGTGAAGGAGTCATCT-CCGACCCTATA-AGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGT-CCGTC----TGTCT----------------GTTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGCT-ATCG
droBia1	scf7180000301523:15602-15845 -		TCGGAAAA--------GGC----------------------------------------------------------------------------G-TAGAAGGTTATA-TGTTAAAAAACAC-----CA-------------GA-------------G---ATTTTATTTTTA--TACCCTTG-----CA-----------------GAGGGTATAATAATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAATGAAGACGACGTTTGCCGACTCCATAAAGTAT----------TTATATTCATGATCAGCGTCACTAGACGAGTAGATCTAGCCATGTCCGTCTGT-CCGTC----CGTCT----G----TCTGTCCGTTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGCT-ATCG
droTak1	scf7180000415878:9894-10126 +		GGAGGA----------GGATAA-TAA-----C----------AATTTTTA--------TT-----------TAA-------------------------------------------TAAC-------TA-------------T--------C--TTATTCTATCTTATATTTA--TACCCTTG-----CA-----------------GAGGGTATTATGATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACGTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCTGT-CCGTC------------------------CGTTTCTACGCAAACTAGTCTCTCAG----TTTTCAAGCT-ATCG
droEug1	scf7180000409359:1388-1606 -		GACGGAT------------------G-----T----------CGTTATCGCGAT----TT--TC-TGGCAACG-------------------ATTCT-------------TTGA------------GAAAGTGGTTCTTCTGAGC-------------G-----ATT----------------------------------------------TTTACTAGATTCGTT--GA-----AAAGTA-----------------------TGTAACAGATAGAAGGAGGCGTTT-GCGACCCTATAAAGTAT----------ATATATTCTTGATCAGAATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGT-CCGTC----CGTCC----G----TCCGTCCGTATGAACG----CTGAGATCTC---------------------
dm3	chr4:216462-216700 +		ACAGTA-------------------A-----A----------AATTT-----AG----TT-----------TACAAA--------------------------------------AGAATTATATATCAA-------------GT-------------A-----ACAGTGTTTA--TACCCGTTACTCGTAAA------ATAA-----AAATGTACACTACATTCGTT--GA-----AAAGTT-----------------------TGTAACGGGCAAAAGGAAGCGTTT-AAGACCATGTAAAGTATA------TGTATATATTCTTGATAAGGATCAATAACCGAGTCGATCTAGCCATTTCCGTCTGT-CCGTA----TGAAC----G----TC----GAG----------------ATCTCAGGAACTATAAAAGCT-ATAA
droSim2	3r:24773787-24774012 -		ATTTCAAAAA------CAATAG-TAA-----A----------G-AATTCA---------------CAGTTTCG-------------------CGTCT-------------TATA------------ACAAAAGTATCTTTTAATCGGTAT-ACAT----------CAGTTTTTA--TATACTTG-------------------------------------ATTCCAT--GA-----AGAGTA--------------------------------------------TGT-CAAAACTCA-CAAGTAT----------ATATATTTTTGATCAGGGTCACTAACCGAGTCTATCTGGCCATGTCTGCCTAT-CTGTC----CGGCC----GTCTGTCTGTCCTTATAAG--------CGTTTTTTTA----TTATAAG----ATCT
droSec2	scaffold_31:513099-513282 -		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTA--TACCCTTG-----CA-----------------CAGGATACATTGATTTCAGT--CA-----GTATTT-----------------------CGCAACGTAGTAAAGGAGACATTT-ACAACCTTAAACAGTAT----------ATATATTCTTGATCAGTATCAAAACCCGAGTCTATGTAA-CATGACTGACTGT-CCCTT----C-TCC----A----TC----CTTTTGTACGCAAAC-------TCTG----CTATAAAGCAGATTT
droYak3	v2_chrUn_1340:511-773 +		TTTTTGAAGT------GGACAA-TTG------CTAA------AAATT--G---------------------CGAA------------------------------------------AAAC-------CA-------------A--------C--AAAA-----TATATATTTA--TACCCGTTACTCGTAGA------GTAA-----AAGGGTATACTAGATTCGTT--GA-----AAAGTA-----------------------TGTAACAGGCAGAAGGAAGGGTTT-CCGACCATATAAAGTAT----------ATATATTCTTGATCAGGACCAATAGCCGAGTCGATATGACCATGTCCGTCTGT-CCGTCTGCCCGGCTGTCTG----TCCGTCCGTATGAAC----GCTGTGATCTCAGGAACTACAAAAGCT-AGAA
droEre2	scaffold_4845:18046386-18046617 +		AAATTT--------------------------TCAAAATTTA------------------------------AAATAACTGAATCC---------------------------------------------------------AA-------------A-----ATTAATTTTA--TATACT-------------------------------------AGATTCGTT--GA-----AAAGTATGTAAGGTATGAATATAAAAGTATGAAAGGC--AGAAGGAAGCGTTT-CCGACCATATAAAGTAT----------TTATATTCGTGATCAGGATCAATAGCTGAGTCGAACTGGCCATGTCCATTTTAACTAAT----TATGG----G----CC----ATAGCCCATGGGAATTAATCAC---A----TTTTAAACAT-ACTT
dp5	Unknown_group_1:53934-54172 +		CATAAATAGAGTAAAACTTTAA-TAA------TTAAGACTTA----------G-----CT--TAGCTAATTCA-------------------AATAT-------------AG------------------------CTTAA--ATAAAATAAAAT---C-----GAAATTTTTA--TACCCGATACTTAA----AATTAT---T-ATAG-GGGTG---------------TG-----GATGTA-----------------------TGTAACGTCCAGAAGGAAGCGTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTGTGT-CTGTC----TGTCC----G----TCTGTTCGT----C-----------------------------------CG
droPer2	scaffold_79:220988-221205 -		GAAGGAGAGA-----------G-TGA----------------AATTTTCT---------------CGGCATCG-------------------AG--------ACG---------------C-------T--------------------T-AC-----------TCAATTTTTA--TACCCGATGCTCAA----AATGAG---T-AT-TGGGGTATATTAGATTTGTGGTGAAAATGGATGTG-----------------------TGTAACGTCCAGAAGGAATCGTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGT-CCGTC------------------------CCTATCAGCGC----------------------------------
droWil2	scf2_1100000004950:131028-131287 +		TATTTTAAGA------GCTCAG---G-----C----------AGCTTTTTCTAC----TT-----------TGAAAC---------------------------------------TAAATTAAAG----TTTTTCCTTTT--GA-------------G-----GTGTTTTTTA--TACCCTTG-----CA-----------------GAGGGTATTAAAAAT-TGGT--CA-----GATGTT-----------------------TGTAACGCACAGAAGGAGACTTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATGAGAAGCTGAGTCGATATAGCCATGTCTGTCTGT-CCGTC----TGTCC----G----TCCGTCTGTGCGAATGCGTTTTAC----TCAGCCGTCTTAAGAGCT-ATCG
droVir3	scaffold_12736:387848-388099 +		GTTGAGTAGAG----GCA---G-TGG-----C----------AATTGATGCGG-----TTTATCGCGGGATCG-------------------AGCGT-------------TGCC------------AAAA-------------GG-------------A-----ACTTTTTTGA--TACCCTTG-----CA-----------------GAGGTTATTATAATTTTGTC--GT-----GAGGTG-----------------------TGTAACGCATAGAAGGAGACATCT-CCGAACCCATAAAGTAT----------ATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGT-CCGTG----TGTC----------------GGTTTCTATGCGAACTAGCCCCTCAG----TTTTAAAGCT-ATCT
droMoj3	scaffold_6358:40284-40556 -		ACATAGAAGC------AAAACAGTAA-----A----------ACTATTTG-----------------------CAAA---------------------------------------TAAACTTAAA----TTGTTGCTTAA--AA-------------A-----ATTTTTATTA--TACCCTGAACCCATTGAAAATGGG---AAAT-CAGGGTATAATGGTTTT-GT--GA-----AATGTA-----------------------TGTAACAGGCAGAAGGAATCATCG-CAGACCCCATAAAGTAT----------ATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGT-CCGTC----CGTCC----G----TCCGTCCGTATGAG--CA--AAAGGATCTCAGAAGATATAAGAGCT-AGAG
droGri2	scaffold_14853:2342574-2342807 +		GGA----------------------------------------ATTCTTTCCAC----TT-----------TGCAAA---------------------------------------CGGGCAAACTTTAA-------------TT-------------A-----ATTTTTTTTATACACACTTG-----AA-----------------GAGGGTATAGAAATTATGTA--GT-----TAAGCT-----------------------TGCAGCGCATTGAAGGAGACGTCT-CCGACCCCATCAATTATATATATATATATATATTCATGATCAGCATCATTGCAACAGTCGATATAGCCATGTCTGTCTAT-CTCT----------------------------TTATATGTGAACTTGTTGCTCTG----TTCTACAGCT-ATCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CTTTGGAAGA------GGACGG-TAG-----A----------AGTTTTCGCGAC----TT-----------CAAAAA---------------------------------------CGAGCTTAAAGTAA-------------G--------------A-----AGTATTTTTA--TACCCTTG-----CA-----------------GAAGTTTTTAAAATTTTGGT--TG-----AAAGTG-----------------------TGAAACGCAGTGAAGAAGAAATCT-CCGAACCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGT-CTATC----TATCT----G----TC----TTTTTCTACGCAAAATAATCTCTCTG----TTTTAAAGCT-ATCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................TTTCGCGAC----TT-----------CAAAAA---------------------------------------CGAGC.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.TTTGGAAGA------GGACGG-TAG-----A----------AGT.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGT-CTA.......................................................................	22	9	0.11	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................AAAGTG-----------------------TGAAACGCAGTGAAG.....................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droBip1

GATGTTG--------------G-TGTAATCT-TTAAAACTTT------------------------------CCATA--------------------------------------ATCAGTTTACACTCA-------------GT-------------A-----ATTATTTTTA--TACCCTTG-----CA-----------------GAGGGTATTATAATTTTGGT--CA-----AAAGTG-----------------------TGCAACGCAGTGAAGGAGACATCT-CCGACCCTATAAAGTAT----------ATATATTTTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGT-CCGTC----TGTCT----G----TC----TGTTTCTACGCGAACTAGTCTCTCAG----TTTTAAAGCT-AGCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGACCA-----------------T---------TCA------AATTT-----------------------------------------------------------CTGTCGTTAAACAGCCT-----AA-------------AA-------------A---GTATTTTTTTTA--TACCCTTG-----CA-----------------GA--GTATTATAATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACCTTT-CCGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGT-CCGTC----TGTCT----G----TCTGTCTATTTCTACGCAAACTAGTCCCTCAG----TTTTAAAGCT-ATCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATTAAAAAA------GTACAA-GCT-----A----------AGGTTCCTATAC----TG-----------TGAAAAAG-------T-------CA-TTGATGGTG----------------------A--------------------T-AC-----------AGAATTTTTA--TACCCTTG-----CAGA------GCAA-----AAGGGTATTATAATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACACCT-CAGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCACGATCAGAATCCAAATCCGTCTGTACGTCTGT-CCGTC----TGTCC----T----CCTGTCGGTTTCTATGTAAACTAGTCTCTCAG----TTTTAAAGCT-ATCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTTCTAAAA------GGATCG-CTT-----A----------AGTGTC-----------------------------------GCCTGAACGAGCGTTATAAGATT----------------------A--------------------T-------AA-----GAGATTTTTA--TACCCTTG-----CA-----------------GAGGGTATTATACTTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACATCT-CTGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAGCCATGTCCGTCTGT-CCGTC----CGTCT----G----TCCGTCCGTTTATATGCAAACTAGTCTCTCAG----TTTTAAAGCT-ATCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTATAGACTA------GGAGTG-AGG-----A----------AGTTCTATCGATTTCATTTTTT-AGG--------------------------CAT-------------TGTT-------------------------------------ACAC----------AACTTTTTA--TACCCTTG-----CA-----------------GAGGGTATTATAATTTTGGT--CA-----AAAGTG-----------------------TGCAACGCAGTGAAGGAGTCATCT-CCGACCCTATA-AGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGT-CCGTC----TGTCT----------------GTTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGCT-ATCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGGAAAA--------GGC----------------------------------------------------------------------------G-TAGAAGGTTATA-TGTTAAAAAACAC-----CA-------------GA-------------G---ATTTTATTTTTA--TACCCTTG-----CA-----------------GAGGGTATAATAATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAATGAAGACGACGTTTGCCGACTCCATAAAGTAT----------TTATATTCATGATCAGCGTCACTAGACGAGTAGATCTAGCCATGTCCGTCTGT-CCGTC----CGTCT----G----TCTGTCCGTTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGCT-ATCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGAGGA----------GGATAA-TAA-----C----------AATTTTTA--------TT-----------TAA-------------------------------------------TAAC-------TA-------------T--------C--TTATTCTATCTTATATTTA--TACCCTTG-----CA-----------------GAGGGTATTATGATTTCAGT--CA-----GAAGTT-----------------------TGCAACGCAGTGAAGGAGACGTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCTGT-CCGTC------------------------CGTTTCTACGCAAACTAGTCTCTCAG----TTTTCAAGCT-ATCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GACGGAT------------------G-----T----------CGTTATCGCGAT----TT--TC-TGGCAACG-------------------ATTCT-------------TTGA------------GAAAGTGGTTCTTCTGAGC-------------G-----ATT----------------------------------------------TTTACTAGATTCGTT--GA-----AAAGTA-----------------------TGTAACAGATAGAAGGAGGCGTTT-GCGACCCTATAAAGTAT----------ATATATTCTTGATCAGAATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGT-CCGTC----CGTCC----G----TCCGTCCGTATGAACG----CTGAGATCTC---------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACAGTA-------------------A-----A----------AATTT-----AG----TT-----------TACAAA--------------------------------------AGAATTATATATCAA-------------GT-------------A-----ACAGTGTTTA--TACCCGTTACTCGTAAA------ATAA-----AAATGTACACTACATTCGTT--GA-----AAAGTT-----------------------TGTAACGGGCAAAAGGAAGCGTTT-AAGACCATGTAAAGTATA------TGTATATATTCTTGATAAGGATCAATAACCGAGTCGATCTAGCCATTTCCGTCTGT-CCGTA----TGAAC----G----TC----GAG----------------ATCTCAGGAACTATAAAAGCT-ATAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT-CCGTA----TGAAC----G----TC----GAG----------------A.........................	26	20	22.15	443	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	5	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	1	10	5	0	0	2	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	2	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	27	0	85	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	15	8	17	170	0	0	0	0	18
..................................................................................................................................................................................................................................................................................................................................................................................T-CCGTA----TGAAC----G----TC----GAG----------------ATCTCAGGAAC...............	28	20	5.85	117	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	12	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................T-CCGTA----TGAAC----G----TC----GAG----------------ATCTCAGG..................	25	20	4.85	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	4	0	4	0	0	0	0	0	0	0	0	0	13	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	23	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	24	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT-CCGTA----TGAAC----G----TC----GAG----------------ATC.......................	28	20	4.65	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	17	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	16	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCTGT-CCGTA----TGAAC----G----TC----GAG----------------ATCTCA....................	27	20	3.20	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TC----GAG----------------ATCTCAGGAACTATAAAAGC......	25	20	3.15	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	8	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	1	0	8	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	10	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGGATCAATAACCGAGTCGATCTAGC........................................................................................	26	3	3.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGT-CCGTA----TGAAC----G----TC----GAG----------------..........................	25	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	2	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	3	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................CGTCTGT-CCGTA----TGAAC----G----T..................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................GATCAATAACCGAGTCGATC............................................................................................	20	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AAC----G----TC----GAG----------------ATCTCAGGAACTATAAAAG.......	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCT-....	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GAAC----G----TC----GAG----------------ATCTCAGG..................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGGATCAATAACCGAGTCGA..............................................................................................	20	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CATTTCCGTCTGT-CCGTA----TGAAC----G----...................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCCATTTCCGTCTGT-CCGTA----T................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TATTCTTGATAAGGATCAATA........................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATTTCAAAAA------CAATAG-TAA-----A----------G-AATTCA---------------CAGTTTCG-------------------CGTCT-------------TATA------------ACAAAAGTATCTTTTAATCGGTAT-ACAT----------CAGTTTTTA--TATACTTG-------------------------------------ATTCCAT--GA-----AGAGTA--------------------------------------------TGT-CAAAACTCA-CAAGTAT----------ATATATTTTTGATCAGGGTCACTAACCGAGTCTATCTGGCCATGTCTGCCTAT-CTGTC----CGGCC----GTCTGTCTGTCCTTATAAG--------CGTTTTTTTA----TTATAAG----ATCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTTTTGATCAGGGTCA...........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AT--GA-----AGAGTA--------------------------------------------TGT-CAAAAA.....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTTTTGATCAGGGTTG...........................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTA--TACCCTTG-----CA-----------------CAGGATACATTGATTTCAGT--CA-----GTATTT-----------------------CGCAACGTAGTAAAGGAGACATTT-ACAACCTTAAACAGTAT----------ATATATTCTTGATCAGTATCAAAACCCGAGTCTATGTAA-CATGACTGACTGT-CCCTT----C-TCC----A----TC----CTTTTGTACGCAAAC-------TCTG----CTATAAAGCAGATTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTTTTGAAGT------GGACAA-TTG------CTAA------AAATT--G---------------------CGAA------------------------------------------AAAC-------CA-------------A--------C--AAAA-----TATATATTTA--TACCCGTTACTCGTAGA------GTAA-----AAGGGTATACTAGATTCGTT--GA-----AAAGTA-----------------------TGTAACAGGCAGAAGGAAGGGTTT-CCGACCATATAAAGTAT----------ATATATTCTTGATCAGGACCAATAGCCGAGTCGATATGACCATGTCCGTCTGT-CCGTCTGCCCGGCTGTCTG----TCCGTCCGTATGAAC----GCTGTGATCTCAGGAACTACAAAAGCT-AGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................TCGTAGA------GTAA-----AAGGGTATACTAGA................................................................................................................................................................................................................................	25	20	4.30	86	0	0	86	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGGGTTT-CC.........................................................................................................................................................	26	20	2.35	47	0	47	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTT-CCGACCATAT.................................................................................................................................................	26	20	0.85	17	0	0	0	17	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATGACCATGTCCGTCTGT-CCGTC.....................................................................	24	20	0.70	14	0	0	14	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGACCATGTCCGTCTGT-CCGTCTGC..................................................................	25	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TATGACCATGTCCGTCTGT-CCGTCTGC..................................................................	27	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GGCTGTCTG----TCCGTCCGTATGAAC----................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TAAAGTAT----------ATATATTCTTGATCAGGAC.............................................................................................................	27	20	0.45	9	0	0	0	0	0	0	0	0	0	0	9
...............................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGACCAATAGCC.....................................................................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGGGTTT-CCGAC......................................................................................................................................................	29	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTT-CCGACCA....................................................................................................................................................	23	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGGGTTT-CCGACC.....................................................................................................................................................	29	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGGGTT.............................................................................................................................................................	23	20	0.20	4	0	3	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGAGT.................................................................................................	26	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATATGACCATGTC..................................................................................	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGGGTTT-CCGAC......................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTCGATATGACCATGTCCGTCTGT-CC........................................................................	26	20	0.15	3	0	1	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGGGTTT-CCGACC.....................................................................................................................................................	28	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGTCTG----TCCGTCCGTATGAAC----GCTGTGATC.......................	30	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
................................................................................................................................................................................................................................................................................................................................................................TATGACCATGTCCGTCTGT-CCGTCTG...................................................................	26	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TAT----------ATATATTCTTGATCAGGACCAA..........................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GA-----AAAGTA-----------------------TGTAACAGGCAGAAGGAAGG................................................................................................................................................................	28	20	0.10	2	0	0	1	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATGAAC----GCTGTGATCTCAGG..................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................ACCAATAGCCGAGTCGATATGACCATG....................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAC----GCTGTGATCTCAGGA.................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TG----TCCGTCCGTATGAAC----GCTGTGATCTC.....................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CGAGTCGATATGACCATGTCCGTC..............................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGGACC............................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGGG...............................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AGTA-----------------------TGTAACAGGCAGAAGGAAGGG...............................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGGGTTT-CC.........................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGGGTTT-CCGACCA....................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGGGTTT-CCGA.......................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TA-----------------------TGTAACAGGCAGAAGGAAGGGT..............................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................TATTTA--TACCCGTTACTCGTAG..............................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGGGTTT-CCGACCATATAAAGTAT----------ATA.............................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCAATAGCCGAGTCGATATGACCATGTC..................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACCAATAGCCGAGTC................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCAATAGCCGAGTCGATATGAC........................................................................................	22	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GAAGGGTTT-CCGACCATATAA...............................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGT.................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTATGAAC----GCTGTGATCTCAG...................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATTTA--TACCCGTTACTCGTAGA------GTAA-----..............................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGTCG...............................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTTA--TACCCGTTACTCGTAGA------GTAA-----AAG...........................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGGGTTT-CCGAC......................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTATGAAC----GCTGTGATCTCAGG..................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................CCGTATGAAC----GCTGTGATCTCAGGA.................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATATGACCATGTCC.................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATATGACCATGT...................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AAATTT--------------------------TCAAAATTTA------------------------------AAATAACTGAATCC---------------------------------------------------------AA-------------A-----ATTAATTTTA--TATACT-------------------------------------AGATTCGTT--GA-----AAAGTATGTAAGGTATGAATATAAAAGTATGAAAGGC--AGAAGGAAGCGTTT-CCGACCATATAAAGTAT----------TTATATTCGTGATCAGGATCAATAGCTGAGTCGAACTGGCCATGTCCATTTTAACTAAT----TATGG----G----CC----ATAGCCCATGGGAATTAATCAC---A----TTTTAAACAT-ACTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................AAAGGC--AGAAGGAAGCGTT.............................................................................................................................................................	19	5	0.20	1	0	0	0	0	1	0	0
.................................................................................................................................................................................ATACT-------------------------------------AGATTCGTT--GA-----AAAGTATG.........................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0

dp5

CATAAATAGAGTAAAACTTTAA-TAA------TTAAGACTTA----------G-----CT--TAGCTAATTCA-------------------AATAT-------------AG------------------------CTTAA--ATAAAATAAAAT---C-----GAAATTTTTA--TACCCGATACTTAA----AATTAT---T-ATAG-GGGTG---------------TG-----GATGTA-----------------------TGTAACGTCCAGAAGGAAGCGTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTGTGT-CTGTC----TGTCC----G----TCTGTTCGT----C-----------------------------------CG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................TAA----AATTAT---T-ATAG-GGGTG---------------TG-----GATG.............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGAT.............................................................................................	23	20	0.45	9	0	9	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCGAGT.................................................................................................	27	20	0.40	8	0	0	0	0	0	0	0	8	0	0
..........................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAG.........................................................................................	27	20	0.25	5	0	1	0	0	0	0	0	0	4	0
.......................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAG..................................................................................................	21	20	0.20	4	0	0	0	0	0	4	0	0	0	0
.............................................................................................................................................................................................................................................GATGTA-----------------------TGTAACGTCCAGAA......................................................................................................................................................................	20	11	0.18	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................ATTTTTA--TACCCGATACTT..................................................................................................................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGAT.............................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGTCTGTGTGT-CTGTC----TGTCC----G----...................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGATTGA..........................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................T-CTGTC----TGTCC----G----TCTGTTCG...........................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TAAAGTAT----------ATATATTCTTGATCAG................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTG...........................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CCAGAAGGAAGCGTTT-CCGACC.....................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGAGCCATG....................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGTCTGTGTGT-CTGTC----TGTCC----........................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCCATGTCT.................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CCAGAAGGAAGCGTTT-CCGA.......................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CCATAAAGTAT----------ATATATTCTT......................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AACGTCCAGAAGGAAGCGTTT-CCG........................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGAGC........................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAG.........................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GTCCAGAAGGAAGCGTTT-CCG........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................CCAGAAGGAAGCGTTT-CCGACCC....................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TCCAGAAGGAAGCGTTT-CCGA.......................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCATGTCTGT...............................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................AGAAGGAAGCGTTT-CCGACC.....................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GAAGGAAGCGTTT-CCGACCCCA..................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCATCAA..........................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GTCCAGAAGGAAGCGTTT-CC.........................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCC.....................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GAAGGAGAGA-----------G-TGA----------------AATTTTCT---------------CGGCATCG-------------------AG--------ACG---------------C-------T--------------------T-AC-----------TCAATTTTTA--TACCCGATGCTCAA----AATGAG---T-AT-TGGGGTATATTAGATTTGTGGTGAAAATGGATGTG-----------------------TGTAACGTCCAGAAGGAATCGTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGT-CCGTC------------------------CCTATCAGCGC----------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................TTTGTGGTGAAAATGGATG.............................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3
.......................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAATGGA...............................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................TGAAAATGGATGTG-----------------------TGTAAC..............................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2
........................................................................................................................................................................................GCTCAA----AATGAG---T-AT-TGGGGT........................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AAATGGATGTG-----------------------TGTAACGTCC..........................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGG................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................AGATTTGTGGTGAAAATGGATGTG-----------------------T...................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTG-----------------------TGTAA...............................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................TTGTGGTGAAAATGGATGT............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droWil2

TATTTTAAGA------GCTCAG---G-----C----------AGCTTTTTCTAC----TT-----------TGAAAC---------------------------------------TAAATTAAAG----TTTTTCCTTTT--GA-------------G-----GTGTTTTTTA--TACCCTTG-----CA-----------------GAGGGTATTAAAAAT-TGGT--CA-----GATGTT-----------------------TGTAACGCACAGAAGGAGACTTTT-CCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATGAGAAGCTGAGTCGATATAGCCATGTCTGTCTGT-CCGTC----TGTCC----G----TCCGTCTGTGCGAATGCGTTTTAC----TCAGCCGTCTTAAGAGCT-ATCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................T-----------------------TGTAACGCACAGAAGGAGACTTT.............................................................................................................................................................	24	14	2.43	34	0	4	0	29	1
..................................................................................................................................................................................................................................................T-----------------------TGTAACGCACAGAAGGAGACTTTT-...........................................................................................................................................................	25	14	0.50	7	0	1	0	6	0
................................................................................................................................................................................................................................................................................................................................................TGAGAAGCTGAGTCGATATAGCCATG....................................................................................	26	20	0.30	6	0	0	0	6	0
..........................................................................................................................................................................................................................AAAAT-TGGT--CA-----GATGTT-----------------------TGTAACGC............................................................................................................................................................................	25	20	0.15	3	0	0	0	3	0
...............................................................................................................................................................................................................................................TGTT-----------------------TGTAACGCACAGAAGGAGACTTT.............................................................................................................................................................	27	14	0.14	2	0	1	0	1	0
...............................................................................................................................................................................................................................................TGTT-----------------------TGTAACGCACAGAAGGAGACTT..............................................................................................................................................................	26	14	0.14	2	0	1	0	1	0
.............................................................................................................................................................................................................................................GATGTT-----------------------TGTAACGCACAGAAGGAGACT...............................................................................................................................................................	27	15	0.13	2	0	0	0	2	0
...............................................................................................................................................................................................................................................TGTT-----------------------TGTAACGCACAGAAGGAGACT...............................................................................................................................................................	25	16	0.13	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................TAT----------ATATATTCTTGATCAGCATGAG..........................................................................................................	25	20	0.10	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................TCAGCATGAGAAGCTGAGTCG...............................................................................................	21	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................TAT----------ATATATTCTTGATCAGCATGAGA.........................................................................................................	26	20	0.10	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................AACGCACAGAAGGAGACTTTT-CCGACCC....................................................................................................................................................	28	11	0.09	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................CGCACAGAAGGAGACTTTT-CCG........................................................................................................................................................	22	13	0.08	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................TAACGCACAGAAGGAGACTTTT-C..........................................................................................................................................................	23	14	0.07	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................TGTAACGCACAGAAGGAGACTTTT-...........................................................................................................................................................	24	14	0.07	1	0	0	0	1	0
.......................................................................................................................................................................................................................................A-----GATGTT-----------------------TGTAACGCACAGAAGGAGACT...............................................................................................................................................................	28	15	0.07	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................ACGCACAGAAGGAGACTTTT-...........................................................................................................................................................	20	15	0.07	1	0	0	1	0	0
..............................................................................................................................................................................................................................................ATGTT-----------------------TGTAACGCACAGAAGGAGACT...............................................................................................................................................................	26	15	0.07	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................TGTAACGCACAGAAGGAGACT...............................................................................................................................................................	21	17	0.06	1	0	1	0	0	0
..................................................................................................................................................................................................................................................T-----------------------TGTAACGCACAGAAGGAGACT...............................................................................................................................................................	22	17	0.06	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGT-CCGTC----.................................................................	18	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----TCAGCCGTCTTAAGAGC......	20	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................TGTTTTTTA--TACCCTTG-----CA-----------------G.............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................CATGAGAAGCTGAGTCGATAT...........................................................................................	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................T--CA-----GATGTT-----------------------TGTAACGCACAGAAG.....................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................TGAGTCGATATAGCCATGTC..................................................................................	20	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................TGGT--CA-----GATGTT-----------------------TGTAACGCACA.........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................TGAGAAGCTGAGTCGATATA..........................................................................................	20	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................A-----GATGTT-----------------------TGTAACGCACAGAAGG....................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................GGT--CA-----GATGTT-----------------------TGTAACGCACAGA.......................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................TGTT-----------------------TGTAACGCACAGAAGGAGAC................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATGAGAAGC......................................................................................................	21	20	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................ATGAGAAGCTGAGTCGATATAG.........................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TGTCC----G----TCCGTCTGTGCGAATGCGT................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCTGT-CCGTC----TGTCC----G----TCCGTCTGTGC........................................	27	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCTGTCT.............................................................................	20	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................T-----------------------TGTAACGCACAGAAGGAGACTTTA-...........................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCTGTCTG............................................................................	22	20	0.05	1	0	1	0	0	0

droVir3

GTTGAGTAGAG----GCA---G-TGG-----C----------AATTGATGCGG-----TTTATCGCGGGATCG-------------------AGCGT-------------TGCC------------AAAA-------------GG-------------A-----ACTTTTTTGA--TACCCTTG-----CA-----------------GAGGTTATTATAATTTTGTC--GT-----GAGGTG-----------------------TGTAACGCATAGAAGGAGACATCT-CCGAACCCATAAAGTAT----------ATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGT-CCGTG----TGTC----------------GGTTTCTATGCGAACTAGCCCCTCAG----TTTTAAAGCT-ATCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGATA............................................................................................	27	20	0.75	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	7	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAG.......................................................................................................	24	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCCG....................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGCCCCTCAG----TT.............	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGAACTAGCCCCTCAG----TTT............	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAAC.........................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GTTGAGTAGAG----GCA---G-TGG-----C----------....................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGTCTGT-CC........................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT-CC........................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGA..............................................................................................	26	20	0.15	3	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGC......................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................G-----------------------TGTAACGCATAGAAGGAGACATC.............................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGTCT.............................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACAGCCGAGTCGATATAGCCATGT...................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT-CCGT......................................................................	21	20	0.10	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTG-----CA-----------------GAGGTTATTATAATTTTGTC--........................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGTC..............................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCATCAACAGCCGAGTCGATATAGCC.......................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................G-----------------------TGTAACGCATAGAAGGAGACA...............................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAG.........................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................CTTAATCAGCATCAACAGCC.....................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCG...............................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TATTCTTAATCAGCATCAACAGCCG....................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TAACGCATAGAAGGAGACATCT-CC.........................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGTCTGT-CCG.......................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACAGCCGAGTCGATATAGCC.......................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATATAGCCATGTCCGTCT.............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGTCGATATAGCCATGTCCGTCT.............................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................ATTCTTAATCAGCATCAACAGCCGAG..................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATAGCCATGTCCGTCTGT-CCG.......................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TATTCTTAATCAGCATCAACAGCC.....................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCG....................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCATGT...................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TG-----------------------TGTAACGCATAGAAGGAGAC................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATA............................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTAATCAGCATCAACA........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATGTCCGT...............................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATATATTCTTAATCAGCATCAACAGC......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TGTAACGCATAGAAGGAGACAT..............................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TAAAGTAT----------ATATATTCTTAATCAGCA..............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTAATCAGCATCAACAGCCG....................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTAATCAGCATC............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGCATCAACAGCCGAGTCGATA............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGCATCAACAGCCGAGTC................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACATAGAAGC------AAAACAGTAA-----A----------ACTATTTG-----------------------CAAA---------------------------------------TAAACTTAAA----TTGTTGCTTAA--AA-------------A-----ATTTTTATTA--TACCCTGAACCCATTGAAAATGGG---AAAT-CAGGGTATAATGGTTTT-GT--GA-----AATGTA-----------------------TGTAACAGGCAGAAGGAATCATCG-CAGACCCCATAAAGTAT----------ATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGT-CCGTC----CGTCC----G----TCCGTCCGTATGAG--CA--AAAGGATCTCAGAAGATATAAGAGCT-AGAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................ACAGGCAGAAGGAATCATCG-C..........................................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
......................................................................................................................................................................TTTTATTA--TACCCTGAACCCA.................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

GGA----------------------------------------ATTCTTTCCAC----TT-----------TGCAAA---------------------------------------CGGGCAAACTTTAA-------------TT-------------A-----ATTTTTTTTATACACACTTG-----AA-----------------GAGGGTATAGAAATTATGTA--GT-----TAAGCT-----------------------TGCAGCGCATTGAAGGAGACGTCT-CCGACCCCATCAATTATATATATATATATATATTCATGATCAGCATCATTGCAACAGTCGATATAGCCATGTCTGTCTAT-CTCT----------------------------TTATATGTGAACTTGTTGCTCTG----TTCTACAGCT-ATCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-11.8	-11.8	-11.7	-11.6

dan_1665

scaffold_13260:1192332-1192482 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads