dan_1664

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTGCTATTTTTAAGGATGCTTGGGTCTGTATTATAAATTTTTATTAGAAAATGGATTTGATAGTGAAATACGATCTGATATATATAAAATTATATAATCTGCTTCATAACTGCAAGGGTATATCACCTTCGGCTCCGTCCGAAGTTAAACTTTCCTTTCTTGTTTTGGGTTATTCCATCTTCTAATAATTTTAAATTTTAGGACGTTGAAGAGCGCTTTAGGAAAGCCATGATAACAAATGCGCAGTTAGA ************************************************(((((.((((..((((.((((.......((((((......)))))).(((((.........)).))))))).))))..)))).)))))..((((.........(((..........))).........))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V105 male body	V106 head	M058 embryo	M044 female body	V039 embryo
..................................................................................................................................................................................................................................CCATGATAACAAATGCGCA......	19	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................AGACGTTGAAGAGCGCTTTAGGAAAGCC.......................	28	1	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................TTAGGAAAGCCATGATAACA..............	20	0	1	1.00	1	0	1	0	0	0	0
..................................................................................................................AGGGTATATCACCTTCGGCTC....................................................................................................................	21	0	7	0.14	1	0	0	0	0	1	0
....................................................GGATTTGGTAGTAAAATACC...................................................................................................................................................................................	20	3	17	0.06	1	0	0	0	1	0	0
..................................................ATAGAATTGCTAGTGAAATA.....................................................................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................GTAGTTAAACTTGCCCTTC............................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................TAATTTTGAATTTGAGGAC...............................................	19	2	20	0.05	1	0	0	0	1	0	0
...................................................TGGATTTGGTAGTAAAAAAC....................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0
....................................................................................................................................................ACTTGCGTTCCTTGTTTTGG...................................................................................	20	3	20	0.05	1	1	0	0	0	0	0

AACGATAAAAATTCCTACGAACCCAGACATAATATTTAAAAATAATCTTTTACCTAAACTATCACTTTATGCTAGACTATATATATTTTAATATATTAGACGAAGTATTGACGTTCCCATATAGTGGAAGCCGAGGCAGGCTTCAATTTGAAAGGAAAGAACAAAACCCAATAAGGTAGAAGATTATTAAAATTTAAAATCCTGCAACTTCTCGCGAAATCCTTTCGGTACTATTGTTTACGCGTCAATCT ************************************************(((((.((((..((((.((((.......((((((......)))))).(((((.........)).))))))).))))..)))).)))))..((((.........(((..........))).........))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M058 embryo
...................................................................................................................................CGAGGCAGGTTTCTATTT......................................................................................................	18	2	6	0.17	1	1	0
....................ACCCACACATAATCTTTAA....................................................................................................................................................................................................................	19	2	9	0.11	1	0	1
......................................................................................................ATGTATTGACGTTCCCATATAGTGG............................................................................................................................	25	1	20	0.05	1	0	1
...........................................................................................................................................................................TAAGGTAGACGGTTATTA..............................................................	18	2	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13260:1191675-1191925 -	dan_1664	TTGCT-------------------------------------------ATTTTTAAGGA-------TGC------------------------------------TTGGGTCTGT---------------------------------ATTATAAA------------TTTT------------------TATTAGAAA--------------------------ATGGATTTGATAGTG----AAATACGATCTG-ATA-TAT----------ATAAA-------------------------------ATTATATAATCTGCTTCA-TAACTGCAAGGGTATATCACCTTCGGCTCCGTCCGAAGTTAAACTTT--CCTTTCTTGTTTT-GG-GTTAT-T---------CC----------A-----------------------TCT-----TCTAATAATTT----TAAATTTT---------AGGAC-----GTT-----GAAGAGCG--------------C----------------TTTAGGAAAGCCATGAT-AACAAATGCGCAG-TTA--------GA
droBip1	scf7180000395290:8372-8622 -		TTCGT-------------------------------------------ATTTTTGAAGA-------TAAAAG-----C---------------------------TTGGGACTTT---------------------------------TTTTAGAT------------TTTG------------------TATTGT------------------------ACTTAATTGGTTTTATTATGAT-----------------A-TTATCATAAGGATCGG--TAAACATAT--A----------------TC------------CG-GTTT-TAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAG--CTTT-CCTTTCTTGTTTT-TAAT--AG-T-------------------GTT-----------------------TGA-----TTTACTTTTTT----TAAATTAC---------CGTACTTTTTACA-----AATGAACG--------------C----------------CGTCGAAAAATGGTTTT-CACAAATTCTTAG--------------
droKik1	scf7180000302486:346155-346418 -		TTGCA-------------------------------------------AACTGTAAACA-------TAATAA-----GTATAGATAAAATGTAATGAAAC-----TT----TGCT---------------------------------TTG------------------TGAGTGTTTTCAGCATTTAAA------------------------------------------------------------------------------------TCT--ATATTATAAACATCGA-----------------------------AA-CCAATCTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTAG--CTT--CATTTCTTGTTTT-CA-TTAA--T-------------------ATTTGAAATTTTTTTAGGAAAATTCAAT-----TATTGCCCATC-------------------------AA-----G-----------AAACAAGTCTAGTTACTTTCACTGAGGGCACATGCC---------ATTTGAT-AACAAATCCGTAA-CAT--------GA
droFic1	scf7180000451926:3819-4042 -		TGCCA-------------------------------------------TATGAAC----------A--ATATGAAAAATTAA----------TAGAAAA-------------------------------------GTCGTCATAGCT----TCAATGTTGTTAGCCTT------------------------------------------------------------------------------------------------------------------------------------TATGTAT--TTTGTTCGACATGTTTGA-TGACTGCAAGGGTATATAAGCTTGGGCTT--GCCGAAGCTAG--CTT--CCTTTCTTGTTTT-AT-T--AT-T-------------------GCT-----------------------TTC-----TCCACTTTTT-TATTTGAGTTTT---------TGCAC---------------------------------TGCTGCATGG--------TTTTTT-----GCATGCT-AAAAATCGTGTCA-TTT--------GG
droEle1	scf7180000491356:48167-48404 -		TAACT-------------------------------------------ATCTAATAATTGAGCTG--------------------------------------------------------------------CAAATCATCATAGTT----TCAATGTTTTTCAGC------------------------------AT-------------------ATACTCA-----------AGTA----AATCATAATTTAAATG-TTT----------TCAAAAGTATTTAA--T-T----------------------------CATGCAA-TAGCTGCAAGGGTATATGAACTTCGGCTT--GCCGAAGTTTG--CTT--TCTTTCTTGTTTT-TAGTTTAGATTTTGCTGTAAGACATTTTCG-----------------------------------------------------------------------------T-----TTAAAAAG--------------T----------------TTATGGAAAAATATAGT-CAAGAATGTGCAC-ACA--------AA
droRho1	scf7180000771164:3680-3898 -		TTGGT-------------------------------------------GTTTTTAAAGT-------TAGGAA-----GT--------------------------TTGGA-TTTT---------------------------------TTA--------------------------------------------------------------TGAGTA----------------TTAAGAATGCATCATAG---GAATAATTT----------TGG--AGAATATAA--T-T-----------------------------ATAGAGTATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGCTAG--CTTT-CCTTTCTTGTTTT-TAATTTAT-TTTCGCTTTAAAATAT----A---------------------------------------------------------------------------TTT-----TAAGTATG-------------------------------TTTAATAAAATCTTTAT-AATGAATTCCGAA-TAA--------GA
droBia1	scf7180000301162:9108-9333 +		AGCTT-------------------------------------------T---GG--GGC-------TTT------------------------------------TTGACATTATCTTATAATATTGGAAATATACATTTTTATATTT----TTA------------------------------------------------------------------------------------------------------------------AGA----------------ATTTCGAATTCAACTTAATAAAATTATTGATT-ATTTTTA-CAACTGCAAGGGTATATAAACTTCGGCTT--GCCGAAGTTAA--CTT--CCTTTCTTGTTTTTTAACTTC------------------------C-----------------------TT-----TCTTGTTTTTTT----TTAATTAC---------------------------ATACATTG--------------C----------------TTTTGGAACACAGTCA--------TGTCAAG-TAT--------GC
droTak1	scf7180000412684:1030-1287 -		TCGATTTTAATTTTTAAAAAATCGAACTACTATATCATATAGCTGTGATAGAAAC----------G--AT-CGAAAAATTAA----------TGTG-AA-------------------------------------ATAATAAGAAAT----TTAACATTTTTGCGATTTG-----------------------------------------------------------------------------------------------------------------TAAA--T-T----------------------------AATAGAATGATCTGCAAGGGTATATAAGCTTCGGTTT--GCCGAAGCTAG--CTT--CCTTTCTTGTTTT-AG-TTTAC-T---------AC----------A-----------------------TAC-----C---------T----TGAACTTTAGAAAATGGGGAACTTGTTTCAAAACAGGTAAAAT--------------C----------------CAACAAA------ACT--------TCGCAAT-TAT--------AA
droEug1	scf7180000405574:52484-52568 -		TATAA-------------------------------------------TATATATATAT------ATATATA-----ATATATATATAATATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----ATAATATA--------------T----------------AA---------TATATT-ATATATAAAATTATATAAATGGCATCA
dm3	chr3R:19712800-19712925 -		TAATA-------------------------------------------AATTACGGTCT------A--ATAAAAA---------TAAAATAATATAAAA---------------------------------------------------------------------------------------------------------------------------------------------------TTAA---------------------------------CCTAC--A----------------CA------------CA-TATA-TTACTGACAGGGTGCAGAGAATTCGGCTT--TTCGCACTTAA--CTT--CTCCTCTCGTTTT-CC-ATTAC-T---------TT----------G-----------------------T--------------------------------------------------------------------------------------------------------------------------------------------C
droSim2	x:14908677-14908732 +		TTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTG-----GAGGAGCG--------------G----------------TTTCGCAAAGCCATGAT-AACGAACGCCCAG-TTG--------GA
droSec2	scaffold_37:316492-316547 +		TTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTT-----GAGGAGCG--------------G----------------TTTCGCAAAGCCATGAT-AACGAACGCCCAG-TTG--------GA
droYak3	3R:1026395-1026503 -		TTTTT-------------------------------------------ATCATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG----------------TGTTCTTATTCGGTATACATCCGTTGTTTAAAAAA-TTTA-TTACTGTAAGAGTATATAATCTTCGGCTT--TCCGCAGCTAG--CTT--CCTTTCCGATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:11308104-11308165 -		TTTTG-------------------------------------------CTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTT-----GAGGAGCG--------------G----------------TTTCGAAAAGCCATGAT-AACGAACGCCCAG-TTG--------GA
dp5	Unknown_group_137:2584-2639 +		TTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGCTATGAT-AACAAATGCACAA-CTT--------GA
droPer2	scaffold_162:76189-76244 -		TTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGCTATGAT-AACAAATGCACAG-CTT--------GA
droWil2	scf2_1100000004909:3202375-3202606 -		TCGTT-------------------------------------------ATTTCCTATGTAGGCCG------------------------------------------------------TTCTTTCGGAAACATTAGCCTTTTTAGCT----TAAACGTTTTTCCACTTTGATGGCTTTAGGTAAGGAAA------------------------------------------------------------------------------------GAG--TT----------------------------------------ACCATAA-AAGTTGCAAGGGTATACAAACTTTGACGC-GGTCGAAGTTAG--CCCCGGCCCTCTGGTTTT-TC-TTTAT-T---------TC----------A-----------------------A------------AAAGTT----TGA-TGTT---------ATGTT-----ATC-----GAAAAT------------------------------------TTGAATGCAATGAGAAACAAAAGCTTAG-ATT--------GA
droVir3	scaffold_12776:7210-7415 +		ATTTT-------------------------------------------GTTTATCAAGA-------TATCTT-----G-------------------AC-CAAACTCGGC-------------------------------------A----TTTACTATTTTCCACTTACT------------------TATTAGATAGAGGCAAAGCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGCAAGGGTATTAGATCTTTGGCGT--GCCGAAGATAG--CCCT-TCTTTCTCGTTTT-AC-TTAAA-T---------TT----------A-----------------------TTT-----T--------A-TATTACAATTTT---------TATAC---------------------------------CCTTGCAGAG--------------------------------------GG-TAT--------TA
droMoj3	scaffold_6541:1063371-1063514 -		TGAAT-------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTCCGCAGTCGGTAACGCCCGACTGCAA--CGT--TCTTACTTGTTTT-AA-ATTAT-T---------TA----------T-----------------------TACCTTTTTGTGTTTTTTT----TTTTCTCC---------AGGAA-----GTC-----GAGGAACG--------------T----------------TTTCGAAAAGCTATGAT-AACGAATGCCCAA-CTT--------GA
droGri2	scaffold_15074:3464101-3464232 +		ACTTG-------------------------------------------ATATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAATATACA-TAA-TAC----------ATAAT-------------------------------ATTATTTATGTGGCTTAT-TATTTAATGTGATTTCCAATCTTAGGCTCGGAACTAACTGACAATTT--TATTTCTAAGTTT-TG-TCTGT-T---------AA----------A-----------------------TCT-----T------------------------------------------------------------------------------------------------------------------------CTG--------GT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TTGCT-------------------------------------------ATTTTTAAGGA-------TGC------------------------------------TTGGGTCTGT---------------------------------ATTATAAA------------TTTT------------------TATTAGAAA--------------------------ATGGATTTGATAGTG----AAATACGATCTG-ATA-TAT----------ATAAA-------------------------------ATTATATAATCTGCTTCA-TAACTGCAAGGGTATATCACCTTCGGCTCCGTCCGAAGTTAAACTTT--CCTTTCTTGTTTT-GG-GTTAT-T---------CC----------A-----------------------TCT-----TCTAATAATTT----TAAATTTT---------AGGAC-----GTT-----GAAGAGCG--------------C----------------TTTAGGAAAGCCATGAT-AACAAATGCGCAG-TTA--------GA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAT-AACAAATGCGCA...............	19	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAAAGCCATGAT-AACA.......................	20	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................AGGGTATATCACCTTCGGCTC.......................................................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0

droBip1

TTCGT-------------------------------------------ATTTTTGAAGA-------TAAAAG-----C---------------------------TTGGGACTTT---------------------------------TTTTAGAT------------TTTG------------------TATTGT------------------------ACTTAATTGGTTTTATTATGAT-----------------A-TTATCATAAGGATCGG--TAAACATAT--A----------------TC------------CG-GTTT-TAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAG--CTTT-CCTTTCTTGTTTT-TAAT--AG-T-------------------GTT-----------------------TGA-----TTTACTTTTTT----TAAATTAC---------CGTACTTTTTACA-----AATGAACG--------------C----------------CGTCGAAAAATGGTTTT-CACAAATTCTTAG--------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGCA-------------------------------------------AACTGTAAACA-------TAATAA-----GTATAGATAAAATGTAATGAAAC-----TT----TGCT---------------------------------TTG------------------TGAGTGTTTTCAGCATTTAAA------------------------------------------------------------------------------------TCT--ATATTATAAACATCGA-----------------------------AA-CCAATCTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTAG--CTT--CATTTCTTGTTTT-CA-TTAA--T-------------------ATTTGAAATTTTTTTAGGAAAATTCAAT-----TATTGCCCATC-------------------------AA-----G-----------AAACAAGTCTAGTTACTTTCACTGAGGGCACATGCC---------ATTTGAT-AACAAATCCGTAA-CAT--------GA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCCA-------------------------------------------TATGAAC----------A--ATATGAAAAATTAA----------TAGAAAA-------------------------------------GTCGTCATAGCT----TCAATGTTGTTAGCCTT------------------------------------------------------------------------------------------------------------------------------------TATGTAT--TTTGTTCGACATGTTTGA-TGACTGCAAGGGTATATAAGCTTGGGCTT--GCCGAAGCTAG--CTT--CCTTTCTTGTTTT-AT-T--AT-T-------------------GCT-----------------------TTC-----TCCACTTTTT-TATTTGAGTTTT---------TGCAC---------------------------------TGCTGCATGG--------TTTTTT-----GCATGCT-AAAAATCGTGTCA-TTT--------GG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAACT-------------------------------------------ATCTAATAATTGAGCTG--------------------------------------------------------------------CAAATCATCATAGTT----TCAATGTTTTTCAGC------------------------------AT-------------------ATACTCA-----------AGTA----AATCATAATTTAAATG-TTT----------TCAAAAGTATTTAA--T-T----------------------------CATGCAA-TAGCTGCAAGGGTATATGAACTTCGGCTT--GCCGAAGTTTG--CTT--TCTTTCTTGTTTT-TAGTTTAGATTTTGCTGTAAGACATTTTCG-----------------------------------------------------------------------------T-----TTAAAAAG--------------T----------------TTATGGAAAAATATAGT-CAAGAATGTGCAC-ACA--------AA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGGT-------------------------------------------GTTTTTAAAGT-------TAGGAA-----GT--------------------------TTGGA-TTTT---------------------------------TTA--------------------------------------------------------------TGAGTA----------------TTAAGAATGCATCATAG---GAATAATTT----------TGG--AGAATATAA--T-T-----------------------------ATAGAGTATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGCTAG--CTTT-CCTTTCTTGTTTT-TAATTTAT-TTTCGCTTTAAAATAT----A---------------------------------------------------------------------------TTT-----TAAGTATG-------------------------------TTTAATAAAATCTTTAT-AATGAATTCCGAA-TAA--------GA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCTT-------------------------------------------T---GG--GGC-------TTT------------------------------------TTGACATTATCTTATAATATTGGAAATATACATTTTTATATTT----TTA------------------------------------------------------------------------------------------------------------------AGA----------------ATTTCGAATTCAACTTAATAAAATTATTGATT-ATTTTTA-CAACTGCAAGGGTATATAAACTTCGGCTT--GCCGAAGTTAA--CTT--CCTTTCTTGTTTTTTAACTTC------------------------C-----------------------TT-----TCTTGTTTTTTT----TTAATTAC---------------------------ATACATTG--------------C----------------TTTTGGAACACAGTCA--------TGTCAAG-TAT--------GC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGATTTTAATTTTTAAAAAATCGAACTACTATATCATATAGCTGTGATAGAAAC----------G--AT-CGAAAAATTAA----------TGTG-AA-------------------------------------ATAATAAGAAAT----TTAACATTTTTGCGATTTG-----------------------------------------------------------------------------------------------------------------TAAA--T-T----------------------------AATAGAATGATCTGCAAGGGTATATAAGCTTCGGTTT--GCCGAAGCTAG--CTT--CCTTTCTTGTTTT-AG-TTTAC-T---------AC----------A-----------------------TAC-----C---------T----TGAACTTTAGAAAATGGGGAACTTGTTTCAAAACAGGTAAAAT--------------C----------------CAACAAA------ACT--------TCGCAAT-TAT--------AA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TATAA-------------------------------------------TATATATATAT------ATATATA-----ATATATATATAATATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----ATAATATA--------------T----------------AA---------TATATT-ATATATAAAATTATATAAATGGCATCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAATA-------------------------------------------AATTACGGTCT------A--ATAAAAA---------TAAAATAATATAAAA---------------------------------------------------------------------------------------------------------------------------------------------------TTAA---------------------------------CCTAC--A----------------CA------------CA-TATA-TTACTGACAGGGTGCAGAGAATTCGGCTT--TTCGCACTTAA--CTT--CTCCTCTCGTTTT-CC-ATTAC-T---------TT----------G-----------------------T--------------------------------------------------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................TTACTGACAGGGTGCAGAGAATTCGGC.........................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GACAGGGTGCAGAGAATTCGG..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GACAGGGTGCAGAGAATTCG...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAGAGAATTCGGCTT--TTCGCA...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGACAGGGTGCAGAGAATTCGG..........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CA------------CA-TATA-TTACTGACAGGGT.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACAGGGTGCAGAGAATTCGGC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGACAGGGTGCAGAGAATTCGGCTT--.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CGTTTT-CC-ATTAC-T---------TT----------G-----------------------T--------------------------------------------------------------------------------------------------------------------------------------------.	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................A----------------CA------------CA-TATA-TTACTGACAGGG........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................A--ATAAAAA---------TAAAATAATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TA-TTACTGACAGGGTAAG....................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTG-----GAGGAGCG--------------G----------------TTTCGCAAAGCCATGAT-AACGAACGCCCAG-TTG--------GA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAACGCCCAG-TTG--------GA	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTT-----GAGGAGCG--------------G----------------TTTCGCAAAGCCATGAT-AACGAACGCCCAG-TTG--------GA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTTTT-------------------------------------------ATCATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG----------------TGTTCTTATTCGGTATACATCCGTTGTTTAAAAAA-TTTA-TTACTGTAAGAGTATATAATCTTCGGCTT--TCCGCAGCTAG--CTT--CCTTTCCGATTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TTTTG-------------------------------------------CTTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTT-----GAGGAGCG--------------G----------------TTTCGAAAAGCCATGAT-AACGAACGCCCAG-TTG--------GA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------G----------------TTTCGAAAAGCCATGAT-AACGAAC....................	26	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----GTT-----GAGGAGCG--------------G----------------TTTCGAAAA....................................	23	1	1.00	1	0	0	0	0	1	0	0

dp5

TTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGCTATGAT-AACAAATGCACAA-CTT--------GA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGCC.................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GTC-----GAAGAACG--------------T----------------TTTCGGAAA....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGC..................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG--------------T----------------TTTCGGAAAGCTATGAT-AAC........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAAAGCTATGAT-AACAAATGC..................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACG--------------T----------------TTTCGGAAAG...................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACG--------------T----------------TTTCGGAAAGCTATGA.............................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

TTGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAT-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGCTATGAT-AACAAATGCACAG-CTT--------GA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC-----GAAGAACG--------------T----------------TTTCGGAAAGCT.................................	24	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GTC-----GAAGAACG--------------T----------------TTTCGGAAAGC..................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

TCGTT-------------------------------------------ATTTCCTATGTAGGCCG------------------------------------------------------TTCTTTCGGAAACATTAGCCTTTTTAGCT----TAAACGTTTTTCCACTTTGATGGCTTTAGGTAAGGAAA------------------------------------------------------------------------------------GAG--TT----------------------------------------ACCATAA-AAGTTGCAAGGGTATACAAACTTTGACGC-GGTCGAAGTTAG--CCCCGGCCCTCTGGTTTT-TC-TTTAT-T---------TC----------A-----------------------A------------AAAGTT----TGA-TGTT---------ATGTT-----ATC-----GAAAAT------------------------------------TTGAATGCAATGAGAAACAAAAGCTTAG-ATT--------GA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................GTCGAAGTTAG--CCCCGGCCC...............................................................................................................................................................................................................	20	20	0.45	9	9	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CATAA-AAGTTGCAAGGGTATACAAACT..............................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	3	0
........................................................................................................................TCTTTCGGAAACATTAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................GGCTTTAGGTAAGGAAA------------------------------------------------------------------------------------GAG--TT----------------------------------------ACC.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....T-------------------------------------------ATTTCCTATGTAGGCCG------------------------------------------------------TTCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................TTTGATGGCTTTAGGTAAGGAAA------------------------------------------------------------------------------------GAG--......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0

droVir3

ATTTT-------------------------------------------GTTTATCAAGA-------TATCTT-----G-------------------AC-CAAACTCGGC-------------------------------------A----TTTACTATTTTCCACTTACT------------------TATTAGATAGAGGCAAAGCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGCAAGGGTATTAGATCTTTGGCGT--GCCGAAGATAG--CCCT-TCTTTCTCGTTTT-AC-TTAAA-T---------TT----------A-----------------------TTT-----T--------A-TATTACAATTTT---------TATAC---------------------------------CCTTGCAGAG--------------------------------------GG-TAT--------TA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGAAGAT............................................................................................................................................................................................................................	26	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGC.........................................................................................................................................................................................................................................	23	20	0.45	9	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTC................................................................................................................................................................................................................................................................	21	12	0.42	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGC.............................................................................................................................................................................................................................................................	24	12	0.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCAAGA-------TATCTT-----G-------------------AC-CAAACTCGGC-------------------------------------A----T....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTC................................................................................................................................................................................................................................................................	26	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TATGAAAA---------------------------------------------------GG--T-TTGGTCTGCAAGG.........................................................................................................................................................................................................................................................	24	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTT................................................................................................................................................................................................................................................................	26	11	0.18	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCT...............................................................................................................................................................................................................................................................	22	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCGT--GC...................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCG.................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGC.............................................................................................................................................................................................................................................................	27	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCT...............................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTC................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTG..............................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGG..................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGT.................................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGG..................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TATGAAAA---------------------------------------------------GG--T-TTGGTCTGCAAGGG........................................................................................................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGT.................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TATGAAAA---------------------------------------------------GG--T-TTGGTCTGCAAGGGT.......................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGAA...............................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-T.....................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TATCTT-----G-------------------AC-CAAACTCGGC-------------------------------------A----TTTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGCAAGG.........................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCGT--G....................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTTTGGCGT--GCCGAAGATAG--C.......................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGA................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGCGT--GCCGAAGA.............................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTG..............................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTC................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TATGAAAA---------------------------------------------------GG--T-TTGGTCTGC.............................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGCA............................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGG..................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................ATCAAGA-------TATCTT-----G-------------------AC-CAAACTCGGC-------------------------------------A----T....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGCGT--GCCGAAG..............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCGT--.....................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TCTT-----G-------------------AC-CAAACTCGGC-------------------------------------A----TTTACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TAGATAGAGGCAAAGCACTATGA.....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGCGT--GCCGAAGATAG--CCC.....................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GTCTGCAAGGGTATTAGATCTTTG...........................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTAGATAGAGGCAAAGCACTATGAGC...................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAG--CCCT-TCTTTCTCGTT........................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GCGT--GCCGAAGATAG--CCCT-TCTTTC.............................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GAGGCAAAGCACTATGAGCA------------------------------------------TTATG...................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-T.....................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GATAGAGGCAAAGCACTATGAGC...................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-......................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-T.....................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTAGATCTTTGGCGT--GCCGAAGATA...........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCAAGA-------TATCTT-----G-------------------AC-CAAACTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTTTGGCGT--GCCGAAGATAG--CCCT-TC.................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCTTTGGCGT--GCCGAAGATAG--C.......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TCTGCAAGGGTATTAGATCTTTGGC.........................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGCACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TAGATCTTTGGCGT--GCCGAAGATAG--C.......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCAAGGGTATTAGATCTTTGGCGT--GC...................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GT--GCCGAAGATAG--CCCT-TCTTTCTCGT.........................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................TTTGGCGT--GCCGAAGATAG--CCCT-TCTTT..............................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTAGATAGAGGCAAAGCACTATGAGCA------------------------------------------........................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCTTTGGCGT--GCCGAAGATAG--CCCT-...................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................TTATCAAGA-------TATCTT-----G-------------------AC-CAAACTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TAGATAGAGGCAAAGCACTATGAGCA------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CACTATGAGCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-......................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AGGGTATTAGATCTTTGGCGT--GCC..................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ATTAGATCTTTGGCGT--GCCGA................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CGAAGATAG--CCCT-TCTTTC.............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCA------------------------------------------TTATGAAAA---------------------------------------------------GG--T-TTGGTCTGCATA..........................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCGT--GCCGAAGA.............................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGAAT-------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTCCGCAGTCGGTAACGCCCGACTGCAA--CGT--TCTTACTTGTTTT-AA-ATTAT-T---------TA----------T-----------------------TACCTTTTTGTGTTTTTTT----TTTTCTCC---------AGGAA-----GTC-----GAGGAACG--------------T----------------TTTCGAAAAGCTATGAT-AACGAATGCCCAA-CTT--------GA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAAGCTATGAT-AACGAAT....................	23	1	1.00	1	0	0	1	0	0	0
..AAT-------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTCCGCAGTCGGT.........................................................................................................................................................................................................................................	21	20	0.60	12	12	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TGCAA--CGT--TCTTACTTGTTTT-AA-AT................................................................................................................................................................................................	25	19	0.05	1	1	0	0	0	0	0
....T-------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTCCGCAGTCGGTAACGC....................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................GTAACGCCCGACTGCAA--CGT--TCT................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0

droGri2

ACTTG-------------------------------------------ATATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAATATACA-TAA-TAC----------ATAAT-------------------------------ATTATTTATGTGGCTTAT-TATTTAATGTGATTTCCAATCTTAGGCTCGGAACTAACTGACAATTT--TATTTCTAAGTTT-TG-TCTGT-T---------AA----------A-----------------------TCT-----T------------------------------------------------------------------------------------------------------------------------CTG--------GT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_1664

scaffold_13260:1191725-1191875 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.1	-22.0	-21.9