ID:

dan_1663

 Coordinate:

scaffold_13260:861664-861814 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.8 -4.6 -4.1 -4.1

Flybase annnotation

CDS [Dana\GF18210-cds]; exon [dana_GLEANR_1947:2]; intron [Dana\GF18210-in]

Repeatable elements

NameClassFamilyStrand
BEL1_I_Dpse-intLTRPao+
mature
  1. scaffold_13260:859393-859418 +
  2. dan_1663  scaffold_13260:861676-861701 +
star
  1. scaffold_12943:146255-146279 -
  2. scaffold_13205:5707-5731 +
  3. scaffold_13260:859423-859447 +
  4. dan_1663  scaffold_13260:861706-861730 +
  5. scaffold_13260:894795-894819 +
  6. scaffold_13260:913129-913153 +
  7. scaffold_13417:3502644-3502668 +
  8. scaffold_13417:4994994-4995018 -
  9. scaffold_13469:319497-319521 -
  10. scaffold_13744:59056-59080 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAAACCGTCAAGGAAACCGTCAAGGAAACCGTCAAGGAAAAAAAATGTGTAAGTTGCTCCTTCAGACGAGCACAACCACTGCCACCGGAAATGGGATATCTACCAAAGGAACGTATATCACCATATACCTTGCCCTTCACGTACACTGGAGTCGATTACTTCGGACCAATAGAAGTCGCTGTTGGGAGACGACGACAGAAAAGATGGGGAGTATTATTCACGTGTATGACAGTTCGCGCAGTACATTTG
**************************************************************...................((..........(((........)))........))************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V055
head
 V106
head
 V039
embryo
...............................................................................................................................................................................AGGCGCTGGTGGGATACGAC........................................................ 20 3 6 1.67 10 8 1 0 0 1 0
..............................................................TTCAGACGAGCACAACCACTGCCACC................................................................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0
................................................................................................................................................................................GTCGCTGGTGGGATACGACC....................................................... 20 3 2 0.50 1 0 1 0 0 0 0
..................................................................................................................................................................................CGCTGTTGGGATACGACC....................................................... 18 2 2 0.50 1 1 0 0 0 0 0
............................................................................................ATGGGATATCTACCAAAGGAACGTA...................................................................................................................................... 25 0 10 0.20 2 2 0 0 0 0 0
...............................................................................................................................TACCTTGCCCTTCACGTACACTG..................................................................................................... 23 0 12 0.17 2 2 0 0 0 0 0
...............................................................TCAGACGAGCACAACCACTGCCACCGG................................................................................................................................................................. 27 0 12 0.17 2 1 0 1 0 0 0
................................................................................................................................................................................................................GGGAGTATTATTCACGTGTATGACAGT................ 27 0 12 0.17 2 2 0 0 0 0 0
...............................................................TCAGACGAGCACAACCACTGCCACCG.................................................................................................................................................................. 26 0 12 0.17 2 2 0 0 0 0 0
........................................................................................................................................................................................................................TATTCACGTGTATGACAGTTCGCGCA......... 26 0 9 0.11 1 1 0 0 0 0 0
.............................................................................................TGGGATATCTACCAAAGGAACGTATA.................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................GACGCTGGTGGGATACGAC........................................................ 19 3 10 0.10 1 0 1 0 0 0 0
........................................................................................................................CACCATATACCTTGCCCTTCACGTAC......................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0
.................................................................................TGCCACCGGAAATGGGATATCTACCAAA.............................................................................................................................................. 28 0 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................TCACCATATACCTTGCCCTTCACG............................................................................................................ 24 0 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................................CCTTCACGTACACTGGAGTCGATTAC.......................................................................................... 26 0 11 0.09 1 1 0 0 0 0 0
........................................................................................................................CACCATATACCTTGCCCTTCACG............................................................................................................ 23 0 11 0.09 1 1 0 0 0 0 0
...............................................................TCAGACGAGCACAACCACTGCCAC.................................................................................................................................................................... 24 0 12 0.08 1 1 0 0 0 0 0
...............................................................TCAGACGAGCACAACCACTGCCACCGGA................................................................................................................................................................ 28 0 12 0.08 1 1 0 0 0 0 0
................................................................................................................................................................................................................GGGAGTATTATTCACGTGTATG..................... 22 0 12 0.08 1 1 0 0 0 0 0
.............................................................................................................................................................................................................ATGGGGAGTATTATTCACGTGTATGACA.................. 28 0 12 0.08 1 1 0 0 0 0 0
..................................................................GACGAGCACAACCACTGCCACCGGA................................................................................................................................................................ 25 0 13 0.08 1 1 0 0 0 0 0
..................................................................................................................................................................................CGCTGTTGGCAGACTTCGAC..................................................... 20 3 15 0.07 1 0 0 0 1 0 0
..........................................................................................AAAAGGGATACCTACCAATGG............................................................................................................................................ 21 3 16 0.06 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................TATGACGGTTCGCGCGGCA...... 19 3 17 0.06 1 0 0 1 0 0 0
...........AAGGAAAGGGTCAAGGAA.............................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0
.............GGAAACCGTCATGGAAGGC........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.......................AAGGAAAGGGTCAAGGAA.................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GTATGACGGTTCGCGGCG........ 18 3 20 0.05 1 0 0 0 0 1 0
.GGAAACCGTCATGGAAGGC....................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.................................................................................................ATATCTACCAGAAGACCGT....................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
...........................................................................AACCACAGCCACCGGAACGGGG.......................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TCCTTTGGCAGTTCCTTTGGCAGTTCCTTTGGCAGTTCCTTTTTTTTACACATTCAACGAGGAAGTCTGCTCGTGTTGGTGACGGTGGCCTTTACCCTATAGATGGTTTCCTTGCATATAGTGGTATATGGAACGGGAAGTGCATGTGACCTCAGCTAATGAAGCCTGGTTATCTTCAGCGACAACCCTCTGCTGCTGTCTTTTCTACCCCTCATAATAAGTGCACATACTGTCAAGCGCGTCATGTAAAC
**************************************************************************************************************************************...................((..........(((........)))........))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
.....................................................................................................................................CGGGAAGTGCATGTGACCTCAGCTAAT........................................................................................... 27 0 9 1.89 17 11 2 1 2 1 0
......................................................................................................................................GGGAAGTGCATGTGACCTCAGCTAAT........................................................................................... 26 0 10 1.80 18 14 4 0 0 0 0
.......................................................................................................................................GGAAGTGCATGTGACCTCAGCTAAT........................................................................................... 25 0 11 1.73 19 15 2 2 0 0 0
...............................................................................................................................................................................................GCTGCTGTCTTTTCTACCCCTCATAAT................................. 27 0 2 1.00 2 2 0 0 0 0 0
....................................................................................................................................................................CCTGGTTATCTTCAGCGACAACCCTCT............................................................ 27 0 2 1.00 2 1 1 0 0 0 0
....................................................................................................................................ACGGGAAGTGCATGTGACCTCAGCTAAT........................................................................................... 28 0 9 0.56 5 5 0 0 0 0 0
....................................................................GCTCGTGTTGGTGACGGTGGCCTT............................................................................................................................................................... 24 0 13 0.54 7 6 0 0 0 1 0
..................GGCAGTTCCTTTGGCAGTTCCTTTTT............................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................CTGCTGTCTTTTCTACCCCTCATAAT................................. 26 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................GGAACGGGAAGTGCATGTGACCT................................................................................................... 23 0 9 0.44 4 3 1 0 0 0 0
...........................................................................................TTACCCTATAGATGGTTTCCTTGCAT...................................................................................................................................... 26 0 10 0.40 4 4 0 0 0 0 0
.................TGGCAGTTCCTTTGGCAGTTCCT................................................................................................................................................................................................................... 23 0 3 0.33 1 0 1 0 0 0 0
.....TGGCAGTTCCTTTGGCAGTTCCT............................................................................................................................................................................................................................... 23 0 3 0.33 1 0 1 0 0 0 0
................TTGGCAGTTCCTTTGGCAGTTCCTT.................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
....TTGGCAGTTCCTTTGGCAGTTCCTT.............................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
............................................................................................TACCCTATAGATGGTTTCCTTGCAT...................................................................................................................................... 25 0 10 0.30 3 1 2 0 0 0 0
.....................................................................................................................................CGGGAAGTGCATGTGACCTCAGCT.............................................................................................. 24 0 9 0.22 2 0 2 0 0 0 0
...............................................................................................................................................................................................GCGGCTGTCTTCCCTACCC......................................... 19 3 19 0.21 4 2 0 0 0 1 1
......................................................................................................ATGGTTTCCTTGCATATAGTGGTAT............................................................................................................................ 25 0 10 0.20 2 2 0 0 0 0 0
........................................................................GTGTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 21 0 15 0.20 3 3 0 0 0 0 0
......................................................................................................ATGGTTTCCTTGCATATAGTGGTATAT.......................................................................................................................... 27 0 10 0.20 2 2 0 0 0 0 0
.....................................................................................................GATGGTTTCCTTGCATATAGTGGTAT............................................................................................................................ 26 0 10 0.20 2 2 0 0 0 0 0
......................................................................................................................................GGGAAGTGCATGTGACCTCAGCTAA............................................................................................ 25 0 10 0.20 2 2 0 0 0 0 0
.............................................................................GGTGACGGTGGCCTTTACCCTATAG..................................................................................................................................................... 25 0 11 0.18 2 2 0 0 0 0 0
.......................................................................................................................................GGAAGTGCATGTGACCGCAGCTAAT........................................................................................... 25 1 11 0.18 2 2 0 0 0 0 0
........................................................................................................................................GAAGTGCATGTGACCTCAGCTAAT........................................................................................... 24 0 12 0.17 2 2 0 0 0 0 0
...........................................................................................................................................GTGCATGTGACCTCAGCTAATGAAGC...................................................................................... 26 0 12 0.17 2 2 0 0 0 0 0
....................................................................GCTCGTGTTGGTGACGGTGGCCT................................................................................................................................................................ 23 0 13 0.15 2 2 0 0 0 0 0
..........................................................................GTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 19 0 15 0.13 2 2 0 0 0 0 0
.........................................................................TGTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 20 0 15 0.13 2 2 0 0 0 0 0
.......................................................................................................................................................ACAGCTAATGAAGCCTGGTTATCTTCAG........................................................................ 28 1 9 0.11 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GTCCACATACTGTCAAGCGCGTCAT...... 25 1 9 0.11 1 0 0 1 0 0 0
.....................................................................................................................................CGGGATGTGCATGTGACCGCAGCTAAT........................................................................................... 27 2 9 0.11 1 1 0 0 0 0 0
................................................................................................................................TGGAACGGGAAGTGCATGTGACCT................................................................................................... 24 0 9 0.11 1 0 1 0 0 0 0
.....................................................................................................................................CGGAAAGTGCATGTGACCTCAGCTAAT........................................................................................... 27 1 9 0.11 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................AGTGCACATACTGTCAAGCGCGTCATG..... 27 0 9 0.11 1 1 0 0 0 0 0
..................................................................................................................................................................AGCCTGGTTATCTTCAGCGACAACC................................................................ 25 0 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................GGGAAGTGCATGTGACCTCATCTAAT........................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................GGGAAGTGCATGGGACCTCAGCTAAG........................................................................................... 26 2 10 0.10 1 0 0 1 0 0 0
.............................................................................................ACCCTATAGATGGTTTCCTTGCATAT.................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0
.....................................................................................................................................TGGGAAGTGCATGTGACCTCAGCTAA............................................................................................ 26 1 10 0.10 1 1 0 0 0 0 0
......................................................................................GGCCTTTACCCTATAGATGGTTTCCTT.......................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................GGGAAGTGCATGTGACCTCAGCTAATG.......................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................GGGAAGTGCATGTGACCTCAGCTAGT........................................................................................... 26 1 10 0.10 1 0 1 0 0 0 0
......................................................................................................................................GGGAAGTGCATGTGACCACAGCTAAT........................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0
.....................................................................................TGGCCTTTACCCTATAGATGGTTTCC............................................................................................................................................ 26 0 10 0.10 1 0 1 0 0 0 0
............................................................................................TACCCTATAGATGGTTTCCTTGCATAT.................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0 0
........................................................................................................GGTTTCCTTGCATATAGTGGTATATG......................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0
..................................................................................................ATAGATGGTTTCCTTGCATATAGTGGTAT............................................................................................................................ 29 0 10 0.10 1 1 0 0 0 0 0
......................................................................................................................TAGTGGTATATGGAACGGGAAGTGCATG......................................................................................................... 28 0 10 0.10 1 0 1 0 0 0 0
................................................................................GACGGTGGCCTTTACCCTATGGATGGTTT.............................................................................................................................................. 29 1 11 0.09 1 1 0 0 0 0 0
.........................................................................TGTTGGTGACGGTGGCCTGTACCCTAT....................................................................................................................................................... 27 1 11 0.09 1 1 0 0 0 0 0
.....................................................................................................GATGGTTTCCTTGCATATAGTGGT.............................................................................................................................. 24 0 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................................GGAAGCGCATGTGACCTCAGCTAAT........................................................................................... 25 1 11 0.09 1 1 0 0 0 0 0
........................................................................................................................GTGGTATATGGAACGGGAAGTGCAT.......................................................................................................... 25 0 11 0.09 1 0 1 0 0 0 0
.....................................................................................................GATGGTTTCCTTGCATATAGTGGTA............................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................................GGAAGTGCATGTGACCTCAGCTAA............................................................................................ 24 0 11 0.09 1 1 0 0 0 0 0
................................................................................GACGGTGGCCTTTACCCTATAGATGGT................................................................................................................................................ 27 0 11 0.09 1 1 0 0 0 0 0
............................................................................................................................TATATGGAACGGGAAGTGCATGT........................................................................................................ 23 0 11 0.09 1 1 0 0 0 0 0
...................................................................................GGTGGCCTTTACCCTATAGATGGTT............................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................GTATATGGAACGGGAAGTGCATGTG....................................................................................................... 25 0 11 0.09 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................ATACTGTCAAGCGCGCCATGTAAA. 24 1 11 0.09 1 1 0 0 0 0 0
................................................................................................................................................................................................................CCCTCATAATAAGTGCACATACTGTCAA............... 28 0 11 0.09 1 1 0 0 0 0 0
......................................................................................................ATGGTTTCCTTGCATATAGTGGTA............................................................................................................................. 24 0 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................GTGCATGTGACCTCAGCTAATGAAG....................................................................................... 25 0 12 0.08 1 1 0 0 0 0 0
..............................................................................GTGACGGTGGCCTTTACCCTAT....................................................................................................................................................... 22 0 12 0.08 1 1 0 0 0 0 0
.................................................................TCTGCTCGTGTTGGTGACGGTGGCCTT............................................................................................................................................................... 27 0 12 0.08 1 1 0 0 0 0 0
................................................................................GACGGTGGCCTTTACCCTATAGAT................................................................................................................................................... 24 0 12 0.08 1 1 0 0 0 0 0
............................................................................................................................................................................................................CTACCCCTCATAATAAGTGCACATAC..................... 26 0 12 0.08 1 1 0 0 0 0 0
.....................................................................CTCGTGTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 24 0 13 0.08 1 0 1 0 0 0 0
.................................................................................................................................GGAACGGGAATTGCATGAG....................................................................................................... 19 2 13 0.08 1 0 0 0 0 0 1
..................................................................CTGCTCGTGTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 27 0 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................TGCATGTGACCTCAGCTAAT........................................................................................... 20 0 13 0.08 1 0 1 0 0 0 0
..................................................................CTGCTCGTGTTGGTGACGGTGGCCTTTA............................................................................................................................................................. 28 0 13 0.08 1 1 0 0 0 0 0
....................................................................GCTCGTGTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 25 0 13 0.08 1 1 0 0 0 0 0
........................................................................GTGTTGGTGACGGTGGCCTT............................................................................................................................................................... 20 0 15 0.07 1 1 0 0 0 0 0
.......................................................................CGTGTTGGTGACGGTGGCCTTT.............................................................................................................................................................. 22 0 15 0.07 1 0 1 0 0 0 0
.........................................................................TGTTGGTGACGTGGGCCTT............................................................................................................................................................... 19 2 17 0.06 1 1 0 0 0 0 0
............................................................................................................................................TGGATGTGAGATCAGCTAA............................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1
...................................................................TGCACGTGTTGGTGACAA...................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13260:861614-861864 + dan_1663 AGG--------AAACCGTCAAGGAAACCGTCAAGGAAACCGTCAAGGAAAAAAAATGTGTAAGTTGCTCCTTCAGACGAGCACAACCACTGCCACCGGAAATGGGATATCTACCAAAGGAACGTATATCACCATATACCTTGCCCTTCACGTACACTGGAGTCGATTACTTCGGACCAATAGAAGTCGCTGTTGGGAGACGACGACAGAAAAGATGGGGAGTATTATTCACGTGTATGACAGTTCGCGCAGTACATT-TG
droBip1 scf7180000393203:10952-11178 - CAGTGTACGCCACATGAC------------------------------GAGGAAATTCCAGAGATGCTGGACTAATCGAGCGACGCCAGAGAACTCCGAGGTGGGCGCCCTACTGTAGGATCGATTGGCGATAAACGAACTGCCGTTTACACACACTGGAATCAACTTCTTTGGATCGCTCGAAGTCAACGTAGGAAGGCCCCGCGAGAAACGATTGGGAGTGCTGTTCACGTGT--TACAGTTACAGCAGTACACA-TC
droKik1 scf7180000301782:2344-2564 - AGG--------ACATCGT------------------------------GGAAAACTGTTCGGCTTGCTGCATCAGACGCGCACAGCCGCTTCCACCAATAATGGGAAATTTACCCAAGGAACGTCTTTCACCGTTCACTCTGCATTTCACGTACACAGGAGTGGACTATTTCGGACCAATGGAAATCGCCGTGGGAAGACGTAGGGAGAAAAGATGGGGAGTATTGTTCACCTGTCTAACAGTTCGTGCTGTCCATT-TA
droFic1 scf7180000450006:5823-6051 + ATTGGCTAGAACCATTAA------------------------------GTCCAACTGCCAGGTATGCAAAAACCTATTTGCAATGCCGAAACCGCCTTTGATGGGACAGCTGCCTATGGACAGAGTTACGGCCTACGTCAGACCTTTTACATACACTGGACTAGATTACCTCGGTCCCTTTTTGGTAGCTATTGGAAGACGTCGTGAAAAAAGATGGGTCGCGTTATTCACCTGTTTGACTACAAGGGCTATACACC-TA
droEle1 scf7180000491313:17050-17270 - AGC--------AAATCAT------------------------------TAAAAACTGTCCGAAGAGTTGCATCAGACGAGCACAGCCGCTTTAATCATTGATGGGAAGTTTGCCGAAGGAAAGTTTATCGCCATATACCCTACCATTCACGTATACTGGAGTGAACTACTTCGGGCAGATTGAAGTCGTCGTGGGACGGCGCCGCGAGAAGAGATGGGGAGTTCTGTTCACCTGTCTCACAGTTCGAGCTGTCCATT-TG
droRho1 scf7180000772251:810-1031 + AGG--------AAATCAT------------------------------CAATAACTGTCCCGTGTGCTGCATCAGGCGAGCACAACCCATTCCACCGATGATGGGAGCTTTACCAAAGGAACGTCTATCGGCACATACACTACCATTTACGTTTACTGGAGTAGACTACTTTGGACCCATTGAAGTTGCTGTAGGAAGGCGTCGCGAGAAGAGATGGGGAGTTTTATTTACTTGCCTGACAGTTCGCGCTGTTCATTTTA
droBia1 scf7180000301504:10787-11003 + AGC--------A-CTAGC------------------------------AAACGCTTGTCAGACGTGCAA---TAAGAAAACGCCTCCGGAGCCACCGGAGACGGGAGATATTCCGCCAGAAAGACTTGCTATTATTGAGATACCTTTCACGAACACTGATATCGACTACCTCGGACCGATCGAGGTGAACGTTGGAAAACGACGACAGAAACGGTGGGGCGTACTGTTCACTTGTCTCACTGTAAGAGCGGTACACA-TC
droTak1 scf7180000413896:1050-1270 + AGG--------AAATCAT------------------------------CAAAAACTGCCCCGTGTGCTGTATCAGGCGAGCACAACCCATTCCACCGATGATGGGAATTTTGCCAAAGGAACGTCTGTCGCCGTATACACTGCCATTTACGTTTACTGGAGTAGACTACTTTGGACCGATTGAAGTTGCTGTAGGGAGGCGTCGCGAGAAGAGATGGGGAGTTTTATTTACCTGTCTAACAGTTCGCGCTGTTCATT-TA
droEug1 scf7180000407242:61933-62166 + AGG--------AGAGTT------------TTACGGAGTGTTAT-----GGCAACCTGTAACTTATGCAAACTCCGGAGAGTACGACCAATTCCGCCATTGATGGGTCCGTTGCCAGAGGACCGGCTGGAGCCGAATGGATGGCCATTCAAGTATACTGGCTTGGACTACTTTGGTCCGCTGTTTGTGACGATTGGACGTCGCACTGAGAAGAGGTGGGTCGCACTCTTTACTTGTCTAACCACCAGGGCTGTCCACC-TG
dm3 chrYHet:269846-270070 + AAC--------CATAAGG-----AGACTGCTACAGA------------GACTAAATTTAAC--------GTTGCGCAGGGCGCGACTAACGCAGCCTGAGATGGGC-CCCTGCTAGAGGATCGACTTGAGGCAAAGGAATGGCCGTTTAAGTATACTGGCCTGGATTATTTCGGATCATTGCATGTGACAATTGGACGACGTACAGAGAAGAGATGGGTGGTGTAATTCACATGCCTAACAACCAGAGCAAAACATT-TG
droSim2 3r:351257-351486 - AAG--------GAGACTG-----------CTACAGAAGTTGGT-----GACTAAATGCAACGTCTGCAAGTTGCGGATGGCGCGATTGACGCAGCCTGAGATAAGC--CCTGCCGGAGAATCGACTTGAGGCAAATGGATGGCCCATTAAGTATACTGGCCTCGATTACTTCGGACCATTGCATGTGACAATTGGGCGACGTACAAAGAAGAGATGGGG---GTTATTCACATGCCTAACAACCAAAGCAATCCATT-GG
droSec2 scaffold_66:155762-155993 + GAG--------GCTT--------------TTACGGAAGGTGTT-----GGCTAACTGTAACGTATGCAAGTTGCGGAAGGCACGACCGACACAACCGAAAATGGGCCCATTGCCAGAGGATCGGCTTGAGGCAAATGGATGGCCATTTAAGTTCACTGGCCTGGACTATTTCGGACCATTGCTTGTGTCGATTGGGCGCCGAACAGAGAAGAGGTGGGTGGCGCTATTCACCTGCTTAACTACGAGAGCCGTCCACT-TG
droYak3 v2_chrUn_690:53473-53701 - AAG--------AAACTC------------CTATGTAAAGTAAT-----GCATGAATGTAATAGATGCATCTTAGATAAAAGCGCACCTAAGACTCCACGTATGGGTCAACTACCGCCAGACCGAATAACACCGTATGTGAGACCATTCACTTATACTGGA-----TTTGTTAGGCCCACTTACCGTAACTGTGGGACGTCACCACGAGAAGCGCTGGGGAGTAATATTTACCTGCATGACTGTCAGAGCTGCTCATA-TA
droEre2 scaffold_4929:25546650-25546870 - GAG--------AGGAGGC------------------------------CAACTACTGTCCGGCGTGCCGTATACGGAACGCCCGGCTTGAGCCACCAGATATGGCAGGTCTGCCTCAAGAGCGGCTTTCTCCATACACATAACCGTTTACCTTCACAGGGGTGGACTATTTCGGACCCGTCGACATCGCTATGGGACGTCGAAGTGCGAAACGATGGGGCGTGCTGTTTACATGTCTCACAACCCACGCTCTCCATC-TA
dp5 Unknown_group_362:6238-6458 - GCG--------CCGTAGC------------------------------GAAAACCTGCCAAAGATACCGCAATAAAAGAGCGCTTCCAGAGGCACCGGAGATGGGAAGCCTACCACCAGAGAGGCTAGCAATCAACGAATTGCCATTCACAAACACAGGTATCGACTACTTCGGACCACTGGAGGTAAACGTAGGAAGACGACGCGAGAAACGATGGGGAGTACTATTCACGTGCCTCACCGTGCGAGCAGTACACA-TC
droPer2 scaffold_133:79830-80050 + GCG--------CCGTAGC------------------------------GAAAACCTGCCAAAGATGCCGCAATAAAAAAGCGCTTCCAGAGGCACCGGAGATGGGAAGCCTACCACCAGAGAGGCTAGCAATCAACGAATTGCCATTCACAAACACAGGTATCGACTACTTCGGACCACTGGAGGTAAACGTAGGAAGACGACGCGAGAAACGATGGGGAGTACTATTCACGTGCCTCACCGTGCGAGCAGTACACA-TC
droWil2 scf2_1100000004501:2438-2658 + GAA--------AAGTCGC------------------------------GAACGCCTGTGTAGCGTGCCTTATACGAGTGGCTCGACCAGTGCCACCAAAGATGGGCGATTTACCAAAAGAGAGGTTATCGCCGTACACACAACCATTCACCTTTACTGGAGTGGACTGCTTCGGCCCATTTGAAGTCGCAGTGGGCAGCAGACACGAGAAGAGATGGGGCGTGTTATTCACATGCCTTACTACCCGAGCGGTACACC-TA
droVir3 scaffold_12961:108793-109013 + GAG--------AAGTTTC------------------------------CAATACCTGCCCAGCGTGCCGCATAAGACGCGCCCGCCCAAAGCCGCCAGGGATGGGCGACCTGCCAATCGAACGATTATCGCCCTATACTCCACCGTTCACATATACTGGAGTGGATTACTTCGGCCCCTACGACATTGTCGTTGGACGGCGTCGTGAGAAGCGCTCGGGGGTGTTATTTACATGCCTCACGGTGCGCGCCGTTCATC-TG
droMoj3 scaffold_4340:1745-1965 + AAC--------AAGCAAA------------------------------GAAAAATTGTCAATATTGCAAAAATGCAAATGCAAAGCCGGAGGCGCCGTTTATGGGGCAACTGCCCATAGATCGTGTGACGCCATACATGAGACCGTTTTCATACACGGGTCTCGATTACTTTGGTCCAGTAATGGTAACAGTAGGACGACGTCGAGAGAAAAGATGGGTCGCGTTGTTCACATGTTTGACAGTACGAGCAGTTCACC-TG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGG--------AAACCGTCAAGGAAACCGTCAAGGAAACCGTCAAGGAAAAAAAATGTGTAAGTTGCTCCTTCAGACGAGCACAACCACTGCCACCGGAAATGGGATATCTACCAAAGGAACGTATATCACCATATACCTTGCCCTTCACGTACACTGGAGTCGATTACTTCGGACCAATAGAAGTCGCTGTTGGGAGACGACGACAGAAAAGATGGGGAGTATTATTCACGTGTATGACAGTTCGCGCAGTACATT-TGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................TTCAGACGAGCACAACCACTGCCACC....................................................................................................................................................................2620.501010000
....................................................................................................ATGGGATATCTACCAAAGGAACGTA.......................................................................................................................................25100.202200000
.......................................................................................................................................TACCTTGCCCTTCACGTACACTG......................................................................................................23120.172200000
.......................................................................TCAGACGAGCACAACCACTGCCACCGG..................................................................................................................................................................27120.172110000
........................................................................................................................................................................................................................GGGAGTATTATTCACGTGTATGACAGT.................27120.172200000
.......................................................................TCAGACGAGCACAACCACTGCCACCG...................................................................................................................................................................26120.172200000
................................................................................................................................................................................................................................TATTCACGTGTATGACAGTTCGCGCA..........2690.111100000
.....................................................................................................TGGGATATCTACCAAAGGAACGTATA.....................................................................................................................................26100.101100000
................................................................................................................................CACCATATACCTTGCCCTTCACGTAC..........................................................................................................26100.101100000
.........................................................................................TGCCACCGGAAATGGGATATCTACCAAA...............................................................................................................................................28110.091100000
...............................................................................................................................TCACCATATACCTTGCCCTTCACG.............................................................................................................24110.091100000
...............................................................................................................................................CCTTCACGTACACTGGAGTCGATTAC...........................................................................................26110.091100000
................................................................................................................................CACCATATACCTTGCCCTTCACG.............................................................................................................23110.091100000
.......................................................................TCAGACGAGCACAACCACTGCCAC.....................................................................................................................................................................24120.081100000
.......................................................................TCAGACGAGCACAACCACTGCCACCGGA.................................................................................................................................................................28120.081100000
........................................................................................................................................................................................................................GGGAGTATTATTCACGTGTATG......................22120.081100000
.....................................................................................................................................................................................................................ATGGGGAGTATTATTCACGTGTATGACA...................28120.081100000
..........................................................................GACGAGCACAACCACTGCCACCGGA.................................................................................................................................................................25130.081100000
droBip1
CAGTGTACGCCACATGAC------------------------------GAGGAAATTCCAGAGATGCTGGACTAATCGAGCGACGCCAGAGAACTCCGAGGTGGGCGCCCTACTGTAGGATCGATTGGCGATAAACGAACTGCCGTTTACACACACTGGAATCAACTTCTTTGGATCGCTCGAAGTCAACGTAGGAAGGCCCCGCGAGAAACGATTGGGAGTGCTGTTCACGTGT--TACAGTTACAGCAGTACACA-TCSizeHit CountTotal NormTotal
No Reads
droKik1
AGG--------ACATCGT------------------------------GGAAAACTGTTCGGCTTGCTGCATCAGACGCGCACAGCCGCTTCCACCAATAATGGGAAATTTACCCAAGGAACGTCTTTCACCGTTCACTCTGCATTTCACGTACACAGGAGTGGACTATTTCGGACCAATGGAAATCGCCGTGGGAAGACGTAGGGAGAAAAGATGGGGAGTATTGTTCACCTGTCTAACAGTTCGTGCTGTCCATT-TASizeHit CountTotal NormTotal
No Reads
droFic1
ATTGGCTAGAACCATTAA------------------------------GTCCAACTGCCAGGTATGCAAAAACCTATTTGCAATGCCGAAACCGCCTTTGATGGGACAGCTGCCTATGGACAGAGTTACGGCCTACGTCAGACCTTTTACATACACTGGACTAGATTACCTCGGTCCCTTTTTGGTAGCTATTGGAAGACGTCGTGAAAAAAGATGGGTCGCGTTATTCACCTGTTTGACTACAAGGGCTATACACC-TASizeHit CountTotal NormTotal
No Reads
droEle1
AGC--------AAATCAT------------------------------TAAAAACTGTCCGAAGAGTTGCATCAGACGAGCACAGCCGCTTTAATCATTGATGGGAAGTTTGCCGAAGGAAAGTTTATCGCCATATACCCTACCATTCACGTATACTGGAGTGAACTACTTCGGGCAGATTGAAGTCGTCGTGGGACGGCGCCGCGAGAAGAGATGGGGAGTTCTGTTCACCTGTCTCACAGTTCGAGCTGTCCATT-TGSizeHit CountTotal NormTotal
No Reads
droRho1
AGG--------AAATCAT------------------------------CAATAACTGTCCCGTGTGCTGCATCAGGCGAGCACAACCCATTCCACCGATGATGGGAGCTTTACCAAAGGAACGTCTATCGGCACATACACTACCATTTACGTTTACTGGAGTAGACTACTTTGGACCCATTGAAGTTGCTGTAGGAAGGCGTCGCGAGAAGAGATGGGGAGTTTTATTTACTTGCCTGACAGTTCGCGCTGTTCATTTTASizeHit CountTotal NormTotal
No Reads
droBia1
AGC--------A-CTAGC------------------------------AAACGCTTGTCAGACGTGCAA---TAAGAAAACGCCTCCGGAGCCACCGGAGACGGGAGATATTCCGCCAGAAAGACTTGCTATTATTGAGATACCTTTCACGAACACTGATATCGACTACCTCGGACCGATCGAGGTGAACGTTGGAAAACGACGACAGAAACGGTGGGGCGTACTGTTCACTTGTCTCACTGTAAGAGCGGTACACA-TCSizeHit CountTotal NormTotal
No Reads
droTak1
AGG--------AAATCAT------------------------------CAAAAACTGCCCCGTGTGCTGTATCAGGCGAGCACAACCCATTCCACCGATGATGGGAATTTTGCCAAAGGAACGTCTGTCGCCGTATACACTGCCATTTACGTTTACTGGAGTAGACTACTTTGGACCGATTGAAGTTGCTGTAGGGAGGCGTCGCGAGAAGAGATGGGGAGTTTTATTTACCTGTCTAACAGTTCGCGCTGTTCATT-TASizeHit CountTotal NormTotal
No Reads
droEug1
AGG--------AGAGTT------------TTACGGAGTGTTAT-----GGCAACCTGTAACTTATGCAAACTCCGGAGAGTACGACCAATTCCGCCATTGATGGGTCCGTTGCCAGAGGACCGGCTGGAGCCGAATGGATGGCCATTCAAGTATACTGGCTTGGACTACTTTGGTCCGCTGTTTGTGACGATTGGACGTCGCACTGAGAAGAGGTGGGTCGCACTCTTTACTTGTCTAACCACCAGGGCTGTCCACC-TGSizeHit CountTotal NormTotal
No Reads
dm3
AAC--------CATAAGG-----AGACTGCTACAGA------------GACTAAATTTAAC--------GTTGCGCAGGGCGCGACTAACGCAGCCTGAGATGGGC-CCCTGCTAGAGGATCGACTTGAGGCAAAGGAATGGCCGTTTAAGTATACTGGCCTGGATTATTTCGGATCATTGCATGTGACAATTGGACGACGTACAGAGAAGAGATGGGTGGTGTAATTCACATGCCTAACAACCAGAGCAAAACATT-TGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................AACAACCAGAGCAAAACA.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TTGAGGCAAAGGAATGGG.....................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droSim2
AAG--------GAGACTG-----------CTACAGAAGTTGGT-----GACTAAATGCAACGTCTGCAAGTTGCGGATGGCGCGATTGACGCAGCCTGAGATAAGC--CCTGCCGGAGAATCGACTTGAGGCAAATGGATGGCCCATTAAGTATACTGGCCTCGATTACTTCGGACCATTGCATGTGACAATTGGGCGACGTACAAAGAAGAGATGGGG---GTTATTCACATGCCTAACAACCAAAGCAATCCATT-GGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................TACTTCGGACCATTGCATGTGACAAT....................................................................2614.00400000001100020000
................................................................................................................................................................................................TGGGCGACGTACAAAGAAGAGATGGGG---......................................2713.00300000010200000000
........................................................................................................................TCGACTTGAGGCAAATGGATGGCCCAT.................................................................................................................2713.00300000010200000000
.......................................................................................................................................................................................TGTGACAATTGGGCGACGTACAAAGA...................................................2613.00300000020000010000
................................................................................................................................................................................................TGGGCGACGTACAAAGAAGAGATGGG..........................................2612.00200000011000000000
................................................................TGCAAGTTGCGGATGGCGCGATTGA...........................................................................................................................................................................2512.00200000000002000000
......................................................................TTGCGGATGGCGCGATTGACGCA.......................................................................................................................................................................2311.00100000010000000000
.......................................................................TGCGGATGGCGCGATTGACGCAGCCTG..................................................................................................................................................................2711.00100000000001000000
......................................................................TTGCGGATGGCGCGATTGACGCAGCC....................................................................................................................................................................2611.00100000000001000000
..........................................................AACGTCTGCAAGTTGCGGATGGCGC.................................................................................................................................................................................2511.00100000000001000000
.......................................................................................................AGC--CCTGCCGGAGAATCGACT......................................................................................................................................2111.00100000000001000000
.......................................................................................GACGCAGCCTGAGATAAGC--CC......................................................................................................................................................2111.00100000000001000000
.......................................................................................................................ATCGACTTGAGGCAAATGGATGGCCCAT.................................................................................................................2811.00100000000001000000
..............................................................................................................TGCCGGAGAATCGACTTGAGG.................................................................................................................................2111.00100000000001000000
................TG-----------CTACAGAAGTTGGT-----GACTAAATG...........................................................................................................................................................................................................2511.00100000000001000000
.......................................TGGT-----GACTAAATGCAACGTCTGCAAGT.............................................................................................................................................................................................2711.00100010000000000000
................................................................................................TGAGATAAGC--CCTGCCGGAGAATCGACT......................................................................................................................................2811.00100000010000000000
...............................................................................................................................................................................................TTGGGCGACGTACAAAGAAGAGATGGG..........................................2711.00100000010000000000
.............................................................................................GCCTGAGATAAGC--CCTGCCGGAGAA............................................................................................................................................2511.00100000010000000000
...................................................................................................GATAAGC--CCTGCCGGAGAATCGACT......................................................................................................................................2511.00100000000001000000
................................................................TGCAAGTTGCGGATGGCGCGAT..............................................................................................................................................................................2211.00100000000001000000
........................................................................................................................................................................................................GTACAAAGAAGAGATGGGG---GTTAT.................................2411.00100000000000010000
..............................................................................................................TGCCGGAGAATCGACTTGAGGC................................................................................................................................2211.00100000000001000000
................................................................TGCAAGTTGCGGATGGCGC.................................................................................................................................................................................1911.00100000000001000000
................................................................................................................................................................................................TGGGCGACGTACAAAGAAGAGATGG...........................................2511.00100000000000010000
.......................................................................................................................ATCGACTTGAGGCAAATGGATGGC.....................................................................................................................2411.00100000010000000000
............................................................................................AGCCTGAGATAAGC--CCTGCCGGAGAA............................................................................................................................................2611.00100000001000000000
................................................................TGCAAGTTGCGGATGGCG..................................................................................................................................................................................1811.00100000000001000000
............................................................................................AGCCTGAGATAAGC--CCTGCCGGAGA.............................................................................................................................................2511.00100000000001000000
................................................................TGCAAGTTGCGGATGGCGCGATTGACGC........................................................................................................................................................................2811.00100000000001000000
.............................................................................................................................TTGAGGCAAATGGATGGC.....................................................................................................................1880.13100000000001000000
..............................................................................................................................TGAGGCAAATGGATGGCC....................................................................................................................1880.13100000000001000000
droSec2
GAG--------GCTT--------------TTACGGAAGGTGTT-----GGCTAACTGTAACGTATGCAAGTTGCGGAAGGCACGACCGACACAACCGAAAATGGGCCCATTGCCAGAGGATCGGCTTGAGGCAAATGGATGGCCATTTAAGTTCACTGGCCTGGACTATTTCGGACCATTGCTTGTGTCGATTGGGCGCCGAACAGAGAAGAGGTGGGTGGCGCTATTCACCTGCTTAACTACGAGAGCCGTCCACT-TGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................TAACGTATGCAAGTTGCGGAAGGC...................................................................................................................................................................................2494.674230363
.........................................................TAACGTATGCAAGTTGCGGAAGGCA..................................................................................................................................................................................2591.441313000
.................................................................................................................................................................TGGACTATTTCGGACCATTGCTTG...........................................................................24111.361515000
.........................................................TAACGTATGCAAGTTGCGGAAGGCAC.................................................................................................................................................................................2691.331212000
.....................................................................................................TGGGCCCATTGCCAGAGGATCGGCT......................................................................................................................................2581.1391053
.........................................................TAACGTATGCAAGTTGCGGAAGG....................................................................................................................................................................................2390.8988000
.................................................................................................................................................................TGGACTATTTCGGACCATTGCTTGTGT........................................................................27110.6474111
.................................................................................................................................................................TGGACTATTTCGGACCATTGCTTGT..........................................................................25110.5560240
.........................................................TAACGTATGCAAGTTGCGGAAGGCACGA...............................................................................................................................................................................2890.4444000
................................................................................................................................................................................................TGGGCGCCGAACAGAGAAGAGGTGG...........................................2590.3332010
..........................................................AACGTATGCAAGTTGCGGAAGGC...................................................................................................................................................................................2390.3333000
.........................................................TAACGTATGCAAGTTGCGGAAGGT...................................................................................................................................................................................2490.3333000
........................................................................................................................................................................................................................................TGCTTAACTACGAGAGCCGTCCAC....2470.2922000
...........................................................................................................................................................................................................................................TTAACTACGAGAGCCGTCCACT-TG2470.2921010
...........................................................................................................................................................................................................................................TTAACTACGAGAGCCGTCCACT-T.2370.2922000
.................................................................................................................................................................TGGACTATTTCGGACCATTGCTT............................................................................23110.2733000
................................................................................................................................................................................................TGGGCGCCGAACAGAGAAGAGGTGGGT.........................................2790.2221010
...........................................................................................................................................................................................TCGATTGGGCGCCGAACAGAGAAGAGG..............................................27100.2022000
.......................................................................................GACACAACCGAAAATGGGCCCATTGC...................................................................................................................................................2670.1411000
....................................................................................ACCGACACAACCGAAAATGGGCCC........................................................................................................................................................2470.1411000
....................................................................................................................................................................................................................................CACCTGCTTAACTACGAGAGCCGTCCACT-..2970.1411000
......................................................................................CGACACAACCGAAAATGGGCCCATTGCC..................................................................................................................................................2870.1411000
..............................................................................................................TGCCAGAGGATCGGCTTGAGGCAAA.............................................................................................................................2580.1310010
..........................................................................................................CCATTGCCAGAGGATCGGCTTGAGGC................................................................................................................................2680.1311000
....................................................................................................ATGGGCCCATTGCCAGAGGATCGGC.......................................................................................................................................2580.1310010
.................................................GCTAACTGTAACGTATGCAAGTTG...........................................................................................................................................................................................2480.1311000
....................................................................................................ATGGGCCCATTGCCAGAGGATCGGCT......................................................................................................................................2680.1310010
.........................................................TAACGTATGCAAGTTGCGGAAGGCAA.................................................................................................................................................................................2690.1110010
.................................................................GCAAGTTGCGGAAGGCACGAC..............................................................................................................................................................................2190.1110001
.........................................................TAACGTATGCAAGTTGCGGAAGGCAT.................................................................................................................................................................................2690.1111000
.......................................................................................................................................TGGATGGCCATTTAAGTTCACTGGCC...................................................................................................2690.1111000
..................................................................................................................AGAGGATCGGCTTGAGGCAAATGGA.........................................................................................................................2590.1111000
.................................................................................................................CAGAGGATCGGCTTGAGGCAAATGGA.........................................................................................................................2690.1111000
..............................................................TATGCAAGTTGCGGAAGGCACGACCGA...........................................................................................................................................................................2790.1111000
.........................................................TAACGTATGCAAGTTGCGGAAGGCC..................................................................................................................................................................................2590.1111000
..........................................................AACGTATGCAAGTTGCGGAAGGCACGA...............................................................................................................................................................................2790.1111000
.........................................................TAACGTATGCAAGTTGCGGAAGGCTTC................................................................................................................................................................................2790.1111000
................................................................TGCAAGTTGCGGAAGGCACGACCGACA.........................................................................................................................................................................2790.1111000
................................................................................................................................................................................................TGGGCGCCGAACAGAGAAGAGGTGGG..........................................2690.1111000
................................................................................................................................................................................................TGGGCGCCGAACAGAGAAGAGGTG............................................24100.1010010
................................................................................................................................................................................................TGGGCGCCGAACAGAGAAGAG...............................................21100.1010010
.........................................................................................................................................................................................TGTCGATTGGGCGCCGAACAGAGAA..................................................25100.1010010
..............................................................................................................................................................................................ATTGGGCGCCGAACAGAGAAGAGGTG............................................26100.1010010
..............................................................................................................................................................................................ATTGGGCGCCGAACAGAGAAGAGG..............................................24100.1011000
...............................................................................................................................................................................................TTGGGCGCCGAACAGAGAAGAGG..............................................23100.1011000
.......................................................................................................................................................................................TGTGTCGATTGGGCGCCGAACAGAGA...................................................26100.1010010
................................................................................................................................................................................................TGGGCGCCGAACAGAGAAGAGG..............................................22100.1010001
.....................................................................................................................................................................................................GCCGAACAGAGAAGAGGTGGGTGGC......................................25100.1010010
.........................................................................................................................................................................TTCGGACCATTGCTTGTGTCGATTGGGC...............................................................28100.1011000
............................................................................................................................................................TGGCCTGGACTATTTCGGACCATTG...............................................................................25100.1011000
.................................................................................................................................................................TGGACTATTTCGGACCATTGCTTGTGTC.......................................................................28110.0910001
..................................................................................................................................................................GGACTATTTCGGACCATTGCTTG...........................................................................23110.0911000
.................................................................................................................................................................TGGACTATTTCGGACCATTGCT.............................................................................22110.0911000
.................................................................................................................................................................TGGACTATTTCGGACCATTGCTTGA..........................................................................25110.0911000
droYak3
AAG--------AAACTC------------CTATGTAAAGTAAT-----GCATGAATGTAATAGATGCATCTTAGATAAAAGCGCACCTAAGACTCCACGTATGGGTCAACTACCGCCAGACCGAATAACACCGTATGTGAGACCATTCACTTATACTGGA-----TTTGTTAGGCCCACTTACCGTAACTGTGGGACGTCACCACGAGAAGCGCTGGGGAGTAATATTTACCTGCATGACTGTCAGAGCTGCTCATA-TASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GAG--------AGGAGGC------------------------------CAACTACTGTCCGGCGTGCCGTATACGGAACGCCCGGCTTGAGCCACCAGATATGGCAGGTCTGCCTCAAGAGCGGCTTTCTCCATACACATAACCGTTTACCTTCACAGGGGTGGACTATTTCGGACCCGTCGACATCGCTATGGGACGTCGAAGTGCGAAACGATGGGGCGTGCTGTTTACATGTCTCACAACCCACGCTCTCCATC-TASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GCG--------CCGTAGC------------------------------GAAAACCTGCCAAAGATACCGCAATAAAAGAGCGCTTCCAGAGGCACCGGAGATGGGAAGCCTACCACCAGAGAGGCTAGCAATCAACGAATTGCCATTCACAAACACAGGTATCGACTACTTCGGACCACTGGAGGTAAACGTAGGAAGACGACGCGAGAAACGATGGGGAGTACTATTCACGTGCCTCACCGTGCGAGCAGTACACA-TCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................GTATCGACTACTTCGGACCACTGG..............................................................................24104.004003200001430
..............................................................................................................................................................GTATCGACTACTTCGGACCACTG...............................................................................23113.093403200000200
..............................................................................................................................................................GTATCGACTACTTCGGACCACTGGAGG...........................................................................27101.501501300000020
.......................................................................................................................................................................................GGTAAACGTAGGAAGACGACGCGA.....................................................2491.11100300000610
.....................................................................................................TGGGAAGCCTACCACCAGAGAGGC.......................................................................................................................................2490.8980500100200
..............................................................................................................................................................GTATCGACTACTTCGGACCACTGGA.............................................................................25100.7070700000000
...............................................................................................................................................................................................TAGGAAGACGACGCGAGAAACGATGG...........................................2690.6760400000200
..............................................................................................................................................................GTATCGACTACTTCGGACCACT................................................................................22110.6470700000000
.........................................................................................................................................................................................TAAACGTAGGAAGACGACGCGAGAAAC................................................2790.5650200000300
..............................................................................................................................................................GTATCGACTACTTCGGACCAC.................................................................................21110.5560510000000
..............................................................................................................................................................GTATCGACTACTTCGGACCACTGGAG............................................................................26100.5050400000100
......................................................................................................................................................................TACTTCGGACCACTGGAGGTAAACG.....................................................................25100.5050100000040
........................................................................TAAAAGAGCGCTTCCAGAGGC.......................................................................................................................................................................21110.4550200000300
...............................................................................................................................................................................................TAGGAAGACGACGCGAGAAACGATG............................................2590.4440000000400
................................................................................................................................................................................................................................TATTCACGTGCCTCACCGTGCGAGCAG.........2790.4440400000000
........................................................................TAAAAGAGCGCTTCCAGAGGCACCGG..................................................................................................................................................................2670.4330100000020
...............................................................................................................................................................TATCGACTACTTCGGACCACTGGAGG...........................................................................26100.4040300000010
.......................................................................................................................................................................................GGTAAACGTAGGAAGACGACGCGAGA...................................................2690.3330300000000
...................................................................................................................................TCAACGAATTGCCATTCACAAACACAGG.....................................................................................................2890.3330300000000
..................................................................................................................................................................................CTGGAGGTAAACGTAGGAAGACGA..........................................................2490.3330000000030
............................................................................................................................................................................................ACGTAGGAAGACGACGCGAGAAACGA..............................................2690.3330000000030
.........................................................................................................................................................................................TAAACGTAGGAAGACGACGCGAGAAA.................................................2690.3330000000210
.......................................................................................................................................................................................GGTAAACGTAGGAAGACGACGC.......................................................2290.3330200000010
..............................................................................................................................................................GTATCGACTACTTCGGACC...................................................................................19110.2730300000000
........................................................................TAAAAGAGCGCTTCCAGAGG........................................................................................................................................................................20110.2730300000000
........................................................................TAAAAGAGCGCTTCCAGAGGCACC....................................................................................................................................................................2480.2520200000000
................................................................................................GGAGATGGGAAGCCTACCACCAG.............................................................................................................................................2380.2520200000000
............................................................................................................................CTAGCAATCAACGAATTGCCATTC................................................................................................................2490.2220200000000
...................................................................................................................................................................................TGGAGGTAAACGTAGGAAGACGACGC.......................................................2690.2220000000020
...................................................................................................................................................................................................AAGACGACGCGAGAAACGATGG...........................................2290.2220000000020
..................................................................................................................................................................................CTGGAGGTAAACGTAGGAAGACGACG........................................................2690.2220000000110
...................................................................................................................................................................................TGGAGGTAAACGTAGGAAGACGAC.........................................................2490.2220000000020
.........................................................................................................................................................................................TAAACGTAGGAAGACGACGCGAGA...................................................2490.2220100000100
........................................................................................................................................................................................GTAAACGTAGGAAGACGACGCGA.....................................................2390.2220200000000
.............................................................................................ACCGGAGATGGGAAGCCTACCAC................................................................................................................................................2350.2010100000000
............................................................................................CACCGGAGATGGGAAGCCTACCACC...............................................................................................................................................2550.2010000100000
...............................................................................................................................................................TATCGACTACTTCGGACCACTGG..............................................................................23100.2020200000000
....................................................................................TCCAGAGGCACCGGAGATGGGAAGCC......................................................................................................................................................2650.2010100000000
.................................................................................................................................................................TCGACTACTTCGGACCACTGGAGG...........................................................................24100.2020200000000
...............................................................................................................................................................TATCGACTACTTCGGACCACTG...............................................................................22110.1820200000000
...........................................................................................................................................................CAGGTATCGACTACTTCGGACC...................................................................................22110.1820200000000
..............................................................................................CCGGAGATGGGAAGCCTACC..................................................................................................................................................2070.1410100000000
............................................................................AGAGCGCTTCCAGAGGCACCGGAGA...............................................................................................................................................................2570.1410100000000
........................................................................................................................................................................................................GACGCGAGAAACGATGGGGAGTACTA..................................2670.1410100000000
..............................................................................................CCGGAGATGGGAAGCCTA....................................................................................................................................................1870.1410100000000
........................................................................................................................................................................................................GACGCGAGAAACGATGGGGAGTAC....................................2470.1410100000000
........................................................................TAAAAGAGCGCTTCCAGAGGCACCG...................................................................................................................................................................2570.1410100000000
.........................................................................AAAAGAGCGCTTCCAGAGGCACCGG..................................................................................................................................................................2570.1410000000100
................................................................................................GGAGATGGGAAGCCTACCA.................................................................................................................................................1980.1310100000000
.........................................................................................................................................................................................................ACGCGAGAAACGATGGGGAGTA.....................................2280.1310100000000
.........................................................................AAAAGAGCGCTTCCAGAGGCAC.....................................................................................................................................................................2280.1310100000000
........................................................................TAAAAGAGCGCTTCCAGAGGCAC.....................................................................................................................................................................2380.1310100000000
............................................................................................................................................................................................................CGAGAAACGATGGGGAGTACTATTCA..............................2680.1310100000000
......................................................................................................................................................................................................ACGACGCGAGAAACGATGGGG.........................................2180.1310100000000
............................................................................................................................................................................................................CGAGAAACGATGGGGAGTACTAT.................................2380.1310100000000
....................................................................................TCCAGAGGCACCGGAGATGGGA..........................................................................................................................................................2280.1310000001000
................................................................................................GGAGATGGGAAGCCTACCACCAGAG...........................................................................................................................................2580.1310100000000
..................................................................................................................................................................................................GAAGACGACGCGAGAAACGATGGGGA........................................2680.1310100000000
.................................................................................................................................................................................................................AACGATGGGGAGTACTATTCACGTGCC........................2780.1310000001000
........................................................................................................................................................................................................GACGCGAGAAACGATGGGGA........................................2080.1310100000000
.................................................................................................GAGATGGGAAGCCTACCACCAGA............................................................................................................................................2390.1110100000000
.............................................................................................................................................GCCATTCACAAACACAGGTATCGACT.............................................................................................2690.1110100000000
..................................................................................................................................................................................CTGGAGGTAAACGTAGGAAGACGAC.........................................................2590.1110000000010
...........................................................................................................................................................................................AACGTAGGAAGACGACGCGAGAAAC................................................2590.1110000000100
..........................................................................................................................................................................TCGGACCACTGGAGGTAAACGTAGG.................................................................2590.1110000000010
..........................................................................................................................................................................................AAACGTAGGAAGACGACGCGAGA...................................................2390.1110100000000
........................................................................................................................GAGGCTAGCAATCAACGAATTG......................................................................................................................2290.1110100000000
...............................................................................................................................................................................................TAGGAAGACGACGCGAGAAACG...............................................2290.1110100000000
................................................................................................................................................................................................AGGAAGACGACGCGAGAAACGA..............................................2290.1110100000000
...................................................................................................................................................................................TGGAGGTAAACGTAGGAAGACGG..........................................................2390.1110000000010
...............................................................................................................................................................................................TAGGAAGACGACGCGAGAAACGAT.............................................2490.1110000000010
...............................................................................................................................................................................................TAGGAAGACGACGCGAGAAAA................................................2190.1110100000000
............................................................................................................................................TGCCATTCACAAACACAGGTATCGA...............................................................................................2590.1110100000000
.......................................................................................................................................................................................GGTAAACGTAGGAAGACGACG........................................................2190.1110000000010
.....................................................................................................TGGGAAGCCTACCACCAGAGAGG........................................................................................................................................2390.1110100000000
........................................................................................................................................................................................................GACGCGAGAAACGATGGG..........................................1890.1110100000000
.............................................................................................................................................GCCATTCACAAACACAGGTATCG................................................................................................2390.1110100000000
.......................................................................................................................AGAGGCTAGCAATCAACGAAT........................................................................................................................21100.1010010000000
........................................................................................................................................................ACACAGGTATCGACTACTTCGGA.....................................................................................23100.1010100000000
.................................................................................................................CACCAGAGAGGCTAGCAATCAACGAAT........................................................................................................................27100.1010000000100
..................................................................................................................................................TCACAAACACAGGTATCGACTACT..........................................................................................24100.1010100000000
.......................................................................................................................................................AACACAGGTATCGACTACTTCG.......................................................................................22100.1010100000000
.......................................................................................................................................................AACACAGGTATCGACTACTTCGGACC...................................................................................26100.1010100000000
..................................................................................................................................................TCACAAACACAGGTATCGACTAC...........................................................................................23100.1010100000000
..................................................................................................................................................................CGACTACTTCGGACCACTGGAGGT..........................................................................24100.1010100000000
GCG--------CCGTAGC------------------------------GAAAACCTGCCAAAGA....................................................................................................................................................................................................26100.1010000000010
.......................................................................................................................................................AACACAGGTATCGACTACTTCGG......................................................................................23100.1010000000010
.......................................................................................................................................................................ACTTCGGACCACTGGAGG...........................................................................18100.1010000000100
..............................................................................................................................................................GTATCGACTACTTCGGAC....................................................................................18110.0910000100000
.................................................................................................................CACCAGAGAGGCTAGCAATCAACGAA.........................................................................................................................26110.0910100000000
.......................................................................ATAAAAGAGCGCTTCCAGAGG........................................................................................................................................................................21110.0910100000000
...............................................................................................................ACCACCAGAGAGGCTAGCAATCAAC............................................................................................................................25110.0910100000000
.........................................................................AAAAGAGCGCTTCCAGAGG........................................................................................................................................................................19110.0910100000000
..............................................................................................................................................................................................................................ACTATTCACGTGCCTCACCGT.................21110.0910100000000
......................................................................AATAAAAGAGCGCTTCCAGA..........................................................................................................................................................................20110.0910100000000
..............................................................................................................................................................GTATCGACTACTTCGGACCA..................................................................................20110.0910100000000
................................................................................................................CCACCAGAGAGGCTAGCAATCAACG...........................................................................................................................25110.0910100000000
................................................................................................................CCACCAGAGAGGCTAGCAATCA..............................................................................................................................22110.0910100000000
..............................................................................................................TACCACCAGAGAGGCTAGCA..................................................................................................................................20110.0910100000000
......................................................................AATAAAAGAGCGCTTCCAGAGG........................................................................................................................................................................22110.0910100000000
...................................................................................................................................TCAACGAATTGCCATTCACAAACA.........................................................................................................24110.0910100000000
...............................................................................................................................................................TATCGACTACTTCGGACCACT................................................................................21110.0910100000000
...............AGC------------------------------GAAAACCTGCCAAAG.....................................................................................................................................................................................................18120.0810100000000
droPer2
GCG--------CCGTAGC------------------------------GAAAACCTGCCAAAGATGCCGCAATAAAAAAGCGCTTCCAGAGGCACCGGAGATGGGAAGCCTACCACCAGAGAGGCTAGCAATCAACGAATTGCCATTCACAAACACAGGTATCGACTACTTCGGACCACTGGAGGTAAACGTAGGAAGACGACGCGAGAAACGATGGGGAGTACTATTCACGTGCCTCACCGTGCGAGCAGTACACA-TCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................GTACTATTCACGTGCCTCACCGTGC...............25200.255050000
..................................................................................................................................................TCACAAACACAGGTATCGACTACT..........................................................................................24200.204040000
........................................................................................................................................................................................................GACGCGAGAAACGATGGGGA........................................20200.153000003
..................................................................................................................................................TCACAAACACAGGTATCGACTAC...........................................................................................23200.102020000
..................................................................................................................................................TCACAAACACAGGTATCGACTA............................................................................................22200.102020000
..................................................AAACCTGCCAAAGATGCCGCA.............................................................................................................................................................................................21130.081010000
....................................................................................................................................................ACAAACACAGGTATCGACTACTT.........................................................................................23200.051010000
................................................................................................................................................................................CACTGGAGGTAAACGTAGGAAGACGA..........................................................26200.051010000
................................................................................................GGAGATGGGAAGCCTACCACCAGAG...........................................................................................................................................25200.051000001
................................................................................................GGAGATGGGAAGCCTACCACCAGAGAG.........................................................................................................................................27200.051010000
................................................................................................................................................................................CACTGGAGGTAAACGTAGGAAGAC............................................................24200.051000001
................................................................................................................................................................ATCGACTACTTCGGACCACTGGAGG...........................................................................25200.051010000
................................................................................................GGAGATGGGAAGCCTACCACCT..............................................................................................................................................22200.051010000
...................................................................................................................................TCAACGAATTGCCATTCACAAACACAGG.....................................................................................................28200.051010000
..................................................................................................................................................TCACAAACACAGGTATCGACTACTT.........................................................................................25200.051010000
................................................................................................GGAGATGGGAAGCCTACCACCAG.............................................................................................................................................23200.051000001
.......................................................................................................................................................................................................................................GTGCCTCACCGTGCGAGCAG.........20200.051010000
.................................................................................................................CACCAGAGAGGCTAGCAATCAACGA..........................................................................................................................25200.051010000
.............................................................................................................................................................................................CGTAGGAAGACGACGCGAGAAACGATG............................................27200.051010000
...................................................................................................................................................................................TGGAGGTAAACGTAGGAAGACGACGC.......................................................26200.051010000
...............................................................................................................................................................TATCGACTACTTCGGACCACTGGATA...........................................................................26200.051010000
............................................................................................................................................................................................................................GTACTATTCACGTGCCTCACCGTG................24200.051010000
.............................................................................................................................................................................................................................TACTATTCACGTGCCTCACCGTG................23200.051010000
droWil2
GAA--------AAGTCGC------------------------------GAACGCCTGTGTAGCGTGCCTTATACGAGTGGCTCGACCAGTGCCACCAAAGATGGGCGATTTACCAAAAGAGAGGTTATCGCCGTACACACAACCATTCACCTTTACTGGAGTGGACTGCTTCGGCCCATTTGAAGTCGCAGTGGGCAGCAGACACGAGAAGAGATGGGGCGTGTTATTCACATGCCTTACTACCCGAGCGGTACACC-TASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................TGCTTCGGCCCATTTGAAGTCGCAG.....................................................................25170.18302010
.................................................................................................................................................................TGGACTGCTTCGGCCCATTTGAAGT..........................................................................25160.06101000
........................................................................................................................................................................CTTCGGCCCATTTGAAGTCGCAG.....................................................................23170.06101000
.....................................................................................................................................................CCTTTACTGGAGTGGACTGCTTCGGCC....................................................................................27170.06101000
...........................................................................................CCACCAAAGATGGGCGATTTACCA.................................................................................................................................................24180.06101000
............................................................................................................................................................TGGAGTGGACTGCTTCGGCCCATT................................................................................24180.06100010
.................................................................................................................................................................TGGACTGCTTCGGCCCATTTGAAG...........................................................................24180.06101000
...........................................................................................................................................................CTGGAGTGGACTGCTTCGGCCCATT................................................................................25180.06101000
..........................................................................................GCCACCAAAGATGGGCGATTTACCAA................................................................................................................................................26180.06101000
......................................................................................................................................................CTTTACTGGAGTGGACTGCTTCGGC.....................................................................................25190.05101000
..............................................................................................................................................................GAGTGGACTGCTTCGGCCCA..................................................................................20190.05110000
...........................................................................................................................................................CTGGAGTGGACTGCTTCGGCCCA..................................................................................23190.05101000
....................................................................................ACCAGTGCCACCAAAGATGGGCGATT......................................................................................................................................................26200.05101000
..................................................................................................................................................................................................................GAGATGGGGCGTGTTATTCACATGCC........................26200.05101000
droVir3
GAG--------AAGTTTC------------------------------CAATACCTGCCCAGCGTGCCGCATAAGACGCGCCCGCCCAAAGCCGCCAGGGATGGGCGACCTGCCAATCGAACGATTATCGCCCTATACTCCACCGTTCACATATACTGGAGTGGATTACTTCGGCCCCTACGACATTGTCGTTGGACGGCGTCGTGAGAAGCGCTCGGGGGTGTTATTTACATGCCTCACGGTGCGCGCCGTTCATC-TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................CCCTATACTCCACCGTTCACATATACTGGAG...................................................................................................31150.071000000000000000000000000000000000000000000000000000100000000000
......................................................................................CAAAGCCGCCAGGGATGGGCGT........................................................................................................................................................22190.051000000000000000000000000000100000000000000000000000000000000000
.....................................................................................CCAAAGCCGCCAGGGATGGGC..........................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...............TTC------------------------------CAATACCTGCCCAGCGTG..................................................................................................................................................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ACATGCCTCACGGTGCGCGCC..........21200.051000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................TTACATGCCTCACGGTGCGCG............21200.051000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................TTACTTCGGCCCCTACGACAT..........................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................GACATTGTCGTTGGACGGCGTC.........................................................22200.051000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................ATACTGGAGTGGATTACTTCG.......................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................CGTTCACATATACTGGAGTGGATTAC...........................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................TATACTGGAGTGGATTACTTCGGCCCC..................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
AAC--------AAGCAAA------------------------------GAAAAATTGTCAATATTGCAAAAATGCAAATGCAAAGCCGGAGGCGCCGTTTATGGGGCAACTGCCCATAGATCGTGTGACGCCATACATGAGACCGTTTTCATACACGGGTCTCGATTACTTTGGTCCAGTAATGGTAACAGTAGGACGACGTCGAGAGAAAAGATGGGTCGCGTTGTTCACATGTTTGACAGTACGAGCAGTTCACC-TGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................TCGAGAGAAAAGATGGGTCGC......................................2160.332000002
..................................................................................................................................................................................GTAATGGTAACAGTAGGACGACGTC.........................................................2560.332000002
..........................................................................................................................................................................................................................TCGCGTTGTTCACATGTTTGA.....................2140.251000001
............................................................................................................................................................................................................AGAGAAAAGATGGGTCGCGTTGTTCA..............................2650.201000001
........................................................................................................................................................................................................GTCGAGAGAAAAGATGGGTCG.......................................2160.171100000
.....................................................................................................................................................................................................................................ACATGTTTGACAGTACGAGCAGTTCACC-..2860.171000001
........................................................................................................................................................................................GTAACAGTAGGACGACGTCGA.......................................................2160.171000001
..........................................................................................................................................................................................................................................TTTGACAGTACGAGCAGTTCA.....2160.171000001
.........................................................................................................................................................................................................................................GTTTGACAGTACGAGCAGTTC......2160.171000001
..................................................................................................................................................................................................................................TTCACATGTTTGACAGTACGAGCA..........2460.171000001
...............................................................................................................................................CGTTTTCATACACGGGTCTCG................................................................................................2160.171000001
........................................................................TGCAAATGCAAAGCCGGAGGCGCCG...................................................................................................................................................................2570.141000001
................................................................TGCAAAAATGCAAATGCAAAGCCGGA..........................................................................................................................................................................2680.131100000

Generated: 05/18/2015 at 02:43 AM