ID:

dan_1642

 Coordinate:

scaffold_13258:808115-808265 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.9

Flybase annnotation

exon [dana_GLEANR_6982:1]; CDS [Dana\GF22760-cds]; intron [Dana\GF22760-in]

Repeatable elements

NameClassFamilyStrand
BEL-6_DTa-I-intLTRPao-
mature
star
  1. scaffold_12911:1133496-1133519 -
  2. scaffold_12948:502560-502583 -
  3. scaffold_13010:613974-613997 +
  4. scaffold_13043:146087-146110 -
  5. scaffold_13082:2958373-2958396 +
  6. scaffold_13082:3045755-3045778 -
  7. scaffold_13099:2903059-2903082 +
  8. scaffold_13230:2669118-2669141 +
  9. scaffold_13250:419281-419304 +
  10. scaffold_13250:890839-890862 +
  11. dan_1642  scaffold_13258:808189-808212 +
  12. scaffold_13258:1370525-1370548 -
  13. scaffold_13339:710777-710800 -
  14. scaffold_13339:1655107-1655130 -
  15. scaffold_13417:2797239-2797262 -

Sense Strand Reads

--------------------##############################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTATTCGACCCGATTAGCAATGTCGGCTGGGCAGAATAGGACTCTAGCGGTAAGTCTCACAAATGCTGGAATCTGTTACGTAGTTCTTTCATCTCGATTGTCTGTTTTGGCAGTGCTAGGTTCTGAACGGTCTGGACGTTGTTCAGCCAATAAAATCTATCGGAATTGGATTCCGAGTTTTGGACTGATGCTTTCACGGATTCACTCTCAAGTTGTCTCGAGTTGTTTCTGCGGTTCACTGTAAACACAT
*********************************************************........((((((...((((.....((((....((((..((((((......))))))...))))...))))......))))...))))))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body
.........................................................TCACAAATGCTGGAATCTGTTACGTAG....................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................................TTACGTAGTTCTTTCATCTCGATTGTC.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................................................................................TGAACGGTCTGGACGTTGTTCAGC....................................................................................................... 24 0 15 0.60 9 2 4 2 0 1
..........................................................................................................TTTGGCAGTGCTAGGTTCTGAACGG........................................................................................................................ 25 0 20 0.40 8 6 0 1 0 1
...........................................................................................................TTGGCAGTGCTAGGTTCTGAACGG........................................................................................................................ 24 0 20 0.35 7 6 0 0 0 1
.............................................................AAATGCTGGAATCTGTTACGTAGTTC.................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................TAGGTTCTGAACGGTCTGGACGTT.............................................................................................................. 24 0 20 0.30 6 0 4 0 1 1
...........................................................................................................................................................................TTCCGAGGTTTGGATTGATGC........................................................... 21 2 8 0.25 2 0 0 0 2 0
..........................................................................................................TTTGGCAGTGCTAGGTTCTGAACG......................................................................................................................... 24 0 20 0.25 5 2 1 1 1 0
............................................................................................................................................................................TCCGAGGTTTGGATTGATGC........................................................... 20 2 8 0.25 2 0 0 0 2 0
...........................................................................................................................................................................TTCCGAGGTTTGGATTGATGCC.......................................................... 22 3 9 0.22 2 0 0 0 2 0
..................................................................................................................TGCTAGGTTCTGAACGGTCTGGAC................................................................................................................. 24 0 20 0.20 4 3 0 1 0 0
.....................TGTCGGCTGGGCAGAATAGGACTC.............................................................................................................................................................................................................. 24 0 20 0.20 4 4 0 0 0 0
..........................................................................................................................TCTGAACGGTCTGGACGTTGTTCAGC....................................................................................................... 26 0 15 0.20 3 1 1 1 0 0
...........................................................................................................TTGGCAGTGCTAGGTTCTGAACGGT....................................................................................................................... 25 0 20 0.20 4 2 0 0 0 2
...............TAGCAATGTCGGCTGGGCAGAATAGG.................................................................................................................................................................................................................. 26 0 20 0.15 3 3 0 0 0 0
..................................................................................................................TGCTAGGTTCTGAACGGTCTGGACGT............................................................................................................... 26 0 20 0.15 3 3 0 0 0 0
..TATTCGACCCGATTAGCAATGTCGGC............................................................................................................................................................................................................................... 26 0 20 0.15 3 1 1 0 0 1
..................................................................................................................TGCTAGGTTCTGAACGGTCTGGACG................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
...............TAGCAATGTCGGCTGGGCAGAATAG................................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
..................................................................................................................TGCTAGGTTCTGAACGGTCTGG................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0
..........................GCTGGGCAGAATAGGACTCTAGCGG........................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
......CGACCCGATTAGCAATGTCGGCTGG............................................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
............................TGGGCAGAATAGGACTCTAGCGGTA...................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
..TATTCGACCCGATTAGCAATGTCGGCT.............................................................................................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0 0
............................................................................................................TGGCAGTGCTAGGTTCTGAACGGTC...................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
.......................................................................................................TGTTTTGGCAGTGCTAGGTTCTGAA........................................................................................................................... 25 0 20 0.10 2 1 1 0 0 0
..........................................................................................................TTTGGCAGTGCTAGGTTCTGAAC.......................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................TAGGTTCTGAACGGTCTGGACGTTG............................................................................................................. 25 0 20 0.10 2 2 0 0 0 0
...............TAGCAATGTCGGCTGGGCAGAATA.................................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................................................................................TTCGAGTTGTTTCTGCGGTTCAC........... 23 1 12 0.08 1 0 1 0 0 0
..........................................................................................................................TCTGAACGGTCTGGACGTTGTTCAGCC...................................................................................................... 27 0 14 0.07 1 0 1 0 0 0
.........................................................................................................................TTCTGAACGGTCTGGACGTTGTTCAGC....................................................................................................... 27 0 14 0.07 1 0 0 1 0 0
............................................................................................................................TTAACGGTCTGGACGTTGTTCAGCC...................................................................................................... 25 1 15 0.07 1 0 1 0 0 0
............................................................................................................................TGAACCGTCTGGACGTTGTTCAGC....................................................................................................... 24 1 16 0.06 1 0 0 1 0 0
............................................................................................................................................TGTTCAGCCAATAAAATCTATCGGA...................................................................................... 25 0 16 0.06 1 0 1 0 0 0
...........CGATTAGCAATGTCGGCTGGGCAGA....................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..........CCGATTAGCAATGTCGGCTGGGCAG........................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................TCTGTTTTGGCAGTGCTAGGTTCTGAA........................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..................................................................................................................TGCTAGGTTCTGAACGGTCTGGACGTTG............................................................................................................. 28 0 20 0.05 1 0 1 0 0 0
............................................................................................................TGGCAGTGCTAGGTTCTGAACGGT....................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..................................GAATAGGACTCTAGCGGTAAGTC.................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..............................GGCAGAATAGGACTCTAGCGGTAA..................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..................................................................................................................TGCTAGGTTCTGAATGGTCTGGACG................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
..................................................................................................................TGCTAGGTACTGAACGGTCTGGACG................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
...ATTCGACCAGATTAGCAATGTCGG................................................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
.......................TCGGCTGGGCAGAATAGGAC................................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
...........................................................................................................TTGGCAGTGCTAGGTTCTGAACGGTCTG.................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
....TTCGACCCGATTAGCAATGTCGG................................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................TTTGGCAGTGCTAGGTTCTGAACGGTC...................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.........CCCGATTAGCAATGTCGGCTGG............................................................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0
..............................GGCAGAATAGGACTCTAGCGGTAAG.................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.......................................................................................................TGTTTTGGCAGTGCTAGGTTCTGAACG......................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................TTTGGCAGTGCTAGGTTCTTAACGT........................................................................................................................ 25 2 20 0.05 1 0 0 1 0 0
............GATTAGCAATGTCGGCTGGGCAGAA...................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.........................................................................................................TTTTGGCAGTGCTAGGTTCTGAA........................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................AGAATAGGACTCTAGCGGTAAGTCTC................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
..........CCGATTAGCAATGTCGGCTGGGCAGAA...................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..................................................................................................................TGCTAGGTTCTGAACGGTC...................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
...................AATGTCGGCTGGGCAGAATAGGACT............................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................GCTAGGTTCTGAACGGTCTGGACG................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
................................CAGAATAGGACTCTAGCGGTAAGTCTC................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
...............................................................................................................CAGTGCTAGGTTCTGAACGGTCTGG................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
............................TGGGCAGAATAGGACTCTAGCGG........................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
..........................................................................................................TTTGGCAGTGCTATGTTCTTAACGT........................................................................................................................ 25 3 20 0.05 1 0 0 1 0 0
...................................................................................................................GCTAGGTTCTGAACGGTCTGGAC................................................................................................................. 23 0 20 0.05 1 0 0 1 0 0
...............................................................................................................CAGTGCTAGGTTCTGAACGGTCTG.................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..................................GAATAGGACTCTAGCGGTAA..................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................................TTTTGGCAGTGCTAGGTTCTGAACG......................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
............GATTAGCAATGTCGGCTGGGCA......................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
........................................................................................................................GTTCTGAACGGTCTGGACGTTGT............................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
.....TCGACCCGATTAGCAATGTCGGCTGG............................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
...............TAGCAATGTCGGCTGGGCAGA....................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................CTGAACGGTCTGGACGTTGTTCA......................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................TTGGCAGTGCTAGGTTCTGAAC.......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
......................GTCGGCTGGGCAGAATAGGACTC.............................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................TGTGGCAGTGCTAGGTTCTGAACGGTC...................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
..........................................................................................................TTTGGCAGTGCTAGGTTCTTAACCG........................................................................................................................ 25 2 20 0.05 1 0 0 1 0 0
ATTATTCGACCCGATTAGCAATG.................................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.....................TGTCGGCTGGGCAGAATAGGAC................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
..TATTCGACCCGATTAGCAATGTC.................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
............................................................GAAATGCTTGAATCTGTT............................................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0
.........................................................................................................................TTCTGAACGGTCTGGACGTTGTTC.......................................................................................................... 24 0 20 0.05 1 0 0 1 0 0
...........................................................................................................TTGGCAGTGCTAGGTTCTGAACGGTC...................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
......................................................................................................CTGTTTTGGCAGTGCTAGGTTCTGAAC.......................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1
............................TGGGCAGAATAGGACTCTAGCGGTAAG.................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
............................TGGGCAGAATAGGACTCTAGCGGTAAA.................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................TGGCAGTGCTAGGTTCTGAACGG........................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................TAGGTTCTGAACGGTCTGGACGTC.............................................................................................................. 24 1 20 0.05 1 0 1 0 0 0
...........................................................................................................TTGGCAGTGCTAGGTTCTCAACCG........................................................................................................................ 24 2 20 0.05 1 0 0 1 0 0
...............TAGCAATGTCGGCTGGGCAGAAT..................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...................................................................................................................GCTAGGTTCTGAACGGTCTGGACGTTG............................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.......................TCGGCTGGGCAGAATAGGACTCTAG........................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................CGGCTGGGCAGAATAGGACTCTAG........................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TAATAAGCTGGGCTAATCGTTACAGCCGACCCGTCTTATCCTGAGATCGCCATTCAGAGTGTTTACGACCTTAGACAATGCATCAAGAAAGTAGAGCTAACAGACAAAACCGTCACGATCCAAGACTTGCCAGACCTGCAACAAGTCGGTTATTTTAGATAGCCTTAACCTAAGGCTCAAAACCTGACTACGAAAGTGCCTAAGTGAGAGTTCAACAGAGCTCAACAAAGACGCCAAGTGACATTTGTGTA
*******************************************************************************************************........((((((...((((.....((((....((((..((((((......))))))...))))...))))......))))...))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
 V106
head
..............................................................................................................................................AAGTCGGTTATTTTAGATAGCCTTAACCT................................................................................ 29 0 1 1.00 1 1 0 0 0 0
......................................TCCTGAGATCGCCATTCAGAGTGTTT........................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................................................................CTTAGACAATGCATCAAGAAAG................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.................................................................CGACCTTAGACAATGCATCAAGAAAG................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................TAAGGCTCAAAACCTGACTACGAAAG....................................................... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................TCACGATCCAAGACTTGCCAGACCTG................................................................................................................. 26 0 20 0.10 2 1 1 0 0 0
............................................................................................................ACCGTCACGATCCAAGACTTGCC........................................................................................................................ 23 0 20 0.10 2 0 2 0 0 0
............................ACCCGTCTTATCCTGAGATCGCCAT...................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
..........................................................................................................................................CAACAAGTCGGTTATTTTAGATA.......................................................................................... 23 0 16 0.06 1 1 0 0 0 0
...........................................................................................................................................AACAAGTCGGTTATTTTAGATA.......................................................................................... 22 0 17 0.06 1 1 0 0 0 0
...................................................................................................................CGATCCAAGACTTGCCAGACCTGCAAC............................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
.........................CCGACCCGTCTTATCCTGAGATCGCCAT...................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
....................................................................CCTTAGACCATGCATCAATAAAGT............................................................................................................................................................... 24 2 20 0.05 1 0 0 1 0 0
..................................................................................................................ACGATCCAAGACTTGCCAGACCTG................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
.........................CCGACCCGTCTTATCCTGAAATCGCCAT...................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................CCAAGACTTGCCAGACCCGCAACAAG.......................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...........................GACCCGTCTTATCCTGAGATCGCCAT...................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
...................................................................................................ACAGACAAAACCGTCACGATCCAAGACT............................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
...........................GACCCGTCTTATCCTGAGGTCGCCATT..................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
............................ACCCGTCTTATCCTGAGATCGCCATT..................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
............................ACCCGTCTTATCCTGAGATCGCCATTC.................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
..............................................................................................................CGTCACGATCCAAGACTTGACAGTCCT.................................................................................................................. 27 2 20 0.05 1 1 0 0 0 0
.........................CCGACCCGTCTTATCCTGAGAT............................................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0
.................................................................................................................CACGATCCAAGACTTGCCAGACCT.................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
.................................................................................................................CACGATCCAAGACTTGCCAGACGT.................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
.............................................................................................................CCGTCACGATCCAAGACTTGCCAGAC.................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................TACGAAAATGCCAAAGTGAA........................................... 20 3 20 0.05 1 0 0 0 1 0
..........................................................................................................AAACCGTCACGATCCAAGACTTGCCA....................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................AAGACGTGCCAGTCCTGCA............................................................................................................... 19 2 20 0.05 1 0 0 0 0 1
...........................................................................................................AACCGTCACGATCCAAGACTTGCCAGA..................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
.................................................................................................................CACGATCCAAGACTTGCCAG...................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.....AGCTGGGCTAATCGTTACAGCCGAC............................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
..................GTTACAGCCGACCCGTCTTATCCTGA............................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.............................................................................................................CCGTCACGATCCAAGACTTGCC........................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13258:808065-808315 + dan_1642 ATTATTCGACCCGATTAGCAATGTCGGCTGGGCA---GAATAGGACTCTAGCGGTAAGTCTCACAAATGCTGGAATCTGTTACGTAGTTCTTTCATCTCGATTGTCTGTTTTGGCAGTGCTAGGTTCTGAACGGTCTGGACGTTGTTCAGCCAATAAAATCTATCGGAATTGGATTCCGAGTTTTGGACTGATGCTTTCACGGATTCACTCTCAAGTTGTCTCGAGTTGTTTCTGCGGTTCACTGTAAACACAT
droBip1 scf7180000396803:3259-3504 + GTTATTGGTTCCGATTAGCAAAGTCGGCTGGGCA---GAGTAGGACCGTAGCGGCAAGTCTTTCAAATGCTGGAATCTGTCGCATAGCTCCTTCATGTTGACTGTCTGTCTCGGTAGTGCTAGGTTCTGAACGGTCTGGACGTTGTTCAACCAGTAAACCTTATCGCAGTTCATTTCCGAGATTTGGAAAGATGCTTTCACGGATCCACTCTCGAG-----TCGAGTCGTCTCTGCGGTCCACTGCAAACACAT
droKik1 scf7180000302582:2135-2380 - ATTGTTTGTTCCGATTAACAAGGTTGGCTGCGCA---GAATAAGACTTTAGTGGCAGGTTCTTCAGGTAGCTATACTTACTGCGCAGTTCCTCTATATCAACAGTTTGTTTTGGCAGCGCGATGTTTTTTACAGTCTGAACATTGTTGAGCCAGAACCGTTTTTCTGAATTTTCCGCGGAAATCTGAATTGATGCGCGCACGGAAGTATCTTCGAA-----TCGTGTGGTTTCCCCAGTCCATTGTAAGCATAT
droEle1 scf7180000490474:6024-6271 + ATTATTTGTTCCAATCAGAAGCATTGGTTCAGCACTTGAATAAGACTTTAAGGGTATTCCATTTAGGTGCGGGTATTTGGCGGTTAACGTAAG-TCGTTGACAGTTTGTCTTGGTAGGCCCAAATTTTTGACTGTGTAAACGTTATTTAGCCAGTATGATTTTTGGTCGTCTGTTCCTGAGATTCGAATATTAAAGCGCACAGAGTTCCTTTCCAT-----TCTGTTGGTTTGATTAGTCCACTGCATACATAT
droRho1 scf7180000779524:338775-339020 + ATTGTTTGTTCCAATTAATAACATTGGCTGCGCG---GAGTAGGTCTCTAATGGCAGGTCCTTTAGATAGCTGTACTTACTGCGCAACTCATCCATATCAACTGTTTGCTTTGGCAGTGCAATGTTTTTCACAGTATGAACGTTGTTGAGCCAGTAACGTGTTTCGGAGCTAACGCCTGAGATTTGGATTGATGCTTGCACGGATGTATTTTCGAA-----CCGGGTTGTTTCTCCAGTCCACTGTAAACAAAT
droBia1 scf7180000301695:23534-23691 + GTTATTCACTCCAACGATTATAGTTGGTCGCACGTTGGCATATGTGGAAATTGGTGTTCCTTAAAGGTACGGGAACTTCATGACGAGCTCCTCCATGTTGGCAGACTGCAATAGTAAGTTTAGGCTTCTGACGCTGCGAACATCTCTCTGTTTAAAAT------------------------------------------------------------------------------------------------
droTak1 scf7180000414084:1555-1800 + GTTGTTTGTTCCAATTAATAACATTGGCTGCGTG---GAGTAGGTCTCTAATGGCAGGTCGTTTAGATAGCTGTACTTACTGCGCAACTCATCCATATCGACGGTTTGCTTTGGCAGTGCAATGTTTTGGACAGTCTGAACGTTGTTGAGCCAGTAACGTTTTTCTGAGCTAACGCCTGAGATTTGGATTGATGCTCGCACGGAAGTATTTTCGAA-----CCGGGTTGTTTCTCCAGTCCACTGCAAACAAAT
dm3 chr2R:514595-514756 + GTTATTCGTACCAATCAAGAGCATTGGTTCAGCGTTCCAATAGGATTTCAAAGGAATTCCATTTATATGTTGGTATTTGGTGATCAGCTCATTTACGTTGACGGCCTGCTTGGGTAAACCCAAGTTTTTGAAGGCGTGAACGTCATTTAGCCAGTAAGATTT--------------------------------------------------------------------------------------------
droSim2 2r:1437903-1438060 + GTTATTCGTACCAATCAAGAGCATTGGTTCAGCATTCCAATAGGATTTCAAAGGAATTCCATTTAAATGTTGGTATTTGGTGATCAGCACATTTACGTTGACGACCTGCT-----AAACCCAAGTTATTGACGGTGTGAACGTCATTTTGCCAGTAAGATTTA-------------------------------------------------------------------------------------------
droSec2 scaffold_170:50474-50630 + GTTATTCGTACCAATCAAGAGCATTGGTTCAGCATTCCAATAGGATTTCAAAGGAATTCCATTTAAATGTTGTTATTTGGTGATCAGCACATTTACGTTGACGACCTGCT-----AAACCCAAGTTCTTGACGGTGTGAACGTCATTTTGCCAGTAAAATTT--------------------------------------------------------------------------------------------
droYak3 v2_chrUh_007:58513-58761 + GTTGTTTGCGCCAATTAGAAGCATCGGTGAAGCATTCCAATATGATTTTATGGGCAATCCATGTAGGTGCTTGTATTTGCTGCCAAGTTTATGTGCGTCAATGGTTTGCTTAGGTAGGGCAAGGTGTTTGATTGAGTGCACGTTGTTGAGCCACAGTTTTCTTCCACTCCCCATCTCCGATATTTTTACCTGGGCTTTGAGAGACGTTTCCTCCGT-----ACGGGTGGTGTCTCCGGTCCACTGCAGACAAAG
droEre2 scaffold_4929:22504702-22504936 - GTTATTCGTACCAATCAATAT--------------TGCAATATGATTTTAAAGGAATTCCATTTAAATGTGGGTATTTGGTGATCAGCTCATTAACGTTGACGGTTTGCTGTGGTAAACCCAAGTTATTGACGGTGGGAACGTCATTTAGTCAGTAAGTTTTTGTATTGTCTGCCCCAGAGACTCGTATATTGAAGCGAACTGAGTTTCTTCCCAT-----CCTTGTGGTTTGATTGGTCCACTGCATGCATAA
droWil2 scf2_1100000004961:3189077-3189324 + ATTGTTGCTGCCGATGAAAATTAGTGGTGTACCGTTTTGGTACGACTTTAGCGGCAAACCACGCAAATAAGGATATTGCTTGGATAGTTCTTCAACATTGATGGTTTGTTTCGGCAATCCTAATTTCTTTACTGAGTGGACGTTGTAGAGCCAT-ACCTTTTGTCAGTTCCCGCTTCCGAGATTTGTAGGTGGGTCTTAACGGAGTCCTCTTCGTT-----TCTGGTTTCTTCACCGGTCCATTGCAGGCAAAT
droVir3 scaffold_13324:1867720-1867734 + GTTGTCCTAGCCGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATTATTCGACCCGATTAGCAATGTCGGCTGGGCA---GAATAGGACTCTAGCGGTAAGTCTCACAAATGCTGGAATCTGTTACGTAGTTCTTTCATCTCGATTGTCTGTTTTGGCAGTGCTAGGTTCTGAACGGTCTGGACGTTGTTCAGCCAATAAAATCTATCGGAATTGGATTCCGAGTTTTGGACTGATGCTTTCACGGATTCACTCTCAAGTTGTCTCGAGTTGTTTCTGCGGTTCACTGTAAACACATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................TCACAAATGCTGGAATCTGTTACGTAG.......................................................................................................................................................................2711.001100000
...............................................................................TTACGTAGTTCTTTCATCTCGATTGTC....................................................................................................................................................2711.001100000
...............................................................................................................................TGAACGGTCTGGACGTTGTTCAGC.......................................................................................................24150.609242010
.............................................................................................................TTTGGCAGTGCTAGGTTCTGAACGG........................................................................................................................25200.408601010
..............................................................................................................TTGGCAGTGCTAGGTTCTGAACGG........................................................................................................................24200.357600010
................................................................AAATGCTGGAATCTGTTACGTAGTTC....................................................................................................................................................................2630.331100000
........................................................................................................................TAGGTTCTGAACGGTCTGGACGTT..............................................................................................................24200.306040011
.............................................................................................................TTTGGCAGTGCTAGGTTCTGAACG.........................................................................................................................24200.255211001
.....................................................................................................................TGCTAGGTTCTGAACGGTCTGGAC.................................................................................................................24200.204301000
.....................TGTCGGCTGGGCA---GAATAGGACTC..............................................................................................................................................................................................................24200.204400000
.............................................................................................................................TCTGAACGGTCTGGACGTTGTTCAGC.......................................................................................................26150.203111000
..............................................................................................................TTGGCAGTGCTAGGTTCTGAACGGT.......................................................................................................................25200.204200020
...............TAGCAATGTCGGCTGGGCA---GAATAGG..................................................................................................................................................................................................................26200.153300000
.....................................................................................................................TGCTAGGTTCTGAACGGTCTGGACGT...............................................................................................................26200.153300000
..TATTCGACCCGATTAGCAATGTCGGC..................................................................................................................................................................................................................................26200.153110010
.....................................................................................................................TGCTAGGTTCTGAACGGTCTGGACG................................................................................................................25200.153300000
...............TAGCAATGTCGGCTGGGCA---GAATAG...................................................................................................................................................................................................................25200.102200000
.....................................................................................................................TGCTAGGTTCTGAACGGTCTGG...................................................................................................................22200.102200000
..........................GCTGGGCA---GAATAGGACTCTAGCGG........................................................................................................................................................................................................25200.102200000
......CGACCCGATTAGCAATGTCGGCTGG...............................................................................................................................................................................................................................25200.102200000
............................TGGGCA---GAATAGGACTCTAGCGGTA......................................................................................................................................................................................................25200.102200000
..TATTCGACCCGATTAGCAATGTCGGCT.................................................................................................................................................................................................................................27200.102020000
...............................................................................................................TGGCAGTGCTAGGTTCTGAACGGTC......................................................................................................................25200.102200000
..........................................................................................................TGTTTTGGCAGTGCTAGGTTCTGAA...........................................................................................................................25200.102110000
.............................................................................................................TTTGGCAGTGCTAGGTTCTGAAC..........................................................................................................................23200.102200000
........................................................................................................................TAGGTTCTGAACGGTCTGGACGTTG.............................................................................................................25200.102200000
...............TAGCAATGTCGGCTGGGCA---GAATA....................................................................................................................................................................................................................24200.102200000
.............................................................................................................................TCTGAACGGTCTGGACGTTGTTCAGCC......................................................................................................27140.071010000
............................................................................................................................TTCTGAACGGTCTGGACGTTGTTCAGC.......................................................................................................27140.071001000
...............................................................................................................................................TGTTCAGCCAATAAAATCTATCGGA......................................................................................25160.061010000
...........CGATTAGCAATGTCGGCTGGGCA---GA.......................................................................................................................................................................................................................25200.051100000
..........CCGATTAGCAATGTCGGCTGGGCA---G........................................................................................................................................................................................................................25200.051100000
........................................................................................................TCTGTTTTGGCAGTGCTAGGTTCTGAA...........................................................................................................................27200.051100000
.....................................................................................................................TGCTAGGTTCTGAACGGTCTGGACGTTG.............................................................................................................28200.051010000
...............................................................................................................TGGCAGTGCTAGGTTCTGAACGGT.......................................................................................................................24200.051100000
.....................................GAATAGGACTCTAGCGGTAAGTC..................................................................................................................................................................................................23200.051100000
..............................GGCA---GAATAGGACTCTAGCGGTAA.....................................................................................................................................................................................................24200.051100000
.......................TCGGCTGGGCA---GAATAGGAC................................................................................................................................................................................................................20200.051100000
..............................................................................................................TTGGCAGTGCTAGGTTCTGAACGGTCTG....................................................................................................................28200.051100000
....TTCGACCCGATTAGCAATGTCGG...................................................................................................................................................................................................................................23200.051100000
.............................................................................................................TTTGGCAGTGCTAGGTTCTGAACGGTC......................................................................................................................27200.051100000
.........CCCGATTAGCAATGTCGGCTGG...............................................................................................................................................................................................................................22200.051010000
..............................GGCA---GAATAGGACTCTAGCGGTAAG....................................................................................................................................................................................................25200.051100000
..........................................................................................................TGTTTTGGCAGTGCTAGGTTCTGAACG.........................................................................................................................27200.051100000
............GATTAGCAATGTCGGCTGGGCA---GAA......................................................................................................................................................................................................................25200.051100000
............................................................................................................TTTTGGCAGTGCTAGGTTCTGAA...........................................................................................................................23200.051100000
.................................A---GAATAGGACTCTAGCGGTAAGTCTC................................................................................................................................................................................................26200.051100000
..........CCGATTAGCAATGTCGGCTGGGCA---GAA......................................................................................................................................................................................................................27200.051100000
.....................................................................................................................TGCTAGGTTCTGAACGGTC......................................................................................................................19200.051010000
...................AATGTCGGCTGGGCA---GAATAGGACT...............................................................................................................................................................................................................25200.051100000
......................................................................................................................GCTAGGTTCTGAACGGTCTGGACG................................................................................................................24200.051100000
................................CA---GAATAGGACTCTAGCGGTAAGTCTC................................................................................................................................................................................................27200.051100000
..................................................................................................................CAGTGCTAGGTTCTGAACGGTCTGG...................................................................................................................25200.051100000
............................TGGGCA---GAATAGGACTCTAGCGG........................................................................................................................................................................................................23200.051010000
......................................................................................................................GCTAGGTTCTGAACGGTCTGGAC.................................................................................................................23200.051001000
..................................................................................................................CAGTGCTAGGTTCTGAACGGTCTG....................................................................................................................24200.051100000
.....................................GAATAGGACTCTAGCGGTAA.....................................................................................................................................................................................................20200.051100000
............................................................................................................TTTTGGCAGTGCTAGGTTCTGAACG.........................................................................................................................25200.051010000
............GATTAGCAATGTCGGCTGGGCA---.........................................................................................................................................................................................................................22200.051010000
...........................................................................................................................GTTCTGAACGGTCTGGACGTTGT............................................................................................................23200.051010000
.....TCGACCCGATTAGCAATGTCGGCTGG...............................................................................................................................................................................................................................26200.051100000
...............TAGCAATGTCGGCTGGGCA---GA.......................................................................................................................................................................................................................21200.051100000
..............................................................................................................................CTGAACGGTCTGGACGTTGTTCA.........................................................................................................23200.051100000
..............................................................................................................TTGGCAGTGCTAGGTTCTGAAC..........................................................................................................................22200.051100000
......................GTCGGCTGGGCA---GAATAGGACTC..............................................................................................................................................................................................................23200.051100000
ATTATTCGACCCGATTAGCAATG.......................................................................................................................................................................................................................................23200.051100000
.....................TGTCGGCTGGGCA---GAATAGGAC................................................................................................................................................................................................................22200.051100000
..TATTCGACCCGATTAGCAATGTC.....................................................................................................................................................................................................................................23200.051010000
............................................................................................................................TTCTGAACGGTCTGGACGTTGTTC..........................................................................................................24200.051001000
..............................................................................................................TTGGCAGTGCTAGGTTCTGAACGGTC......................................................................................................................26200.051010000
.........................................................................................................CTGTTTTGGCAGTGCTAGGTTCTGAAC..........................................................................................................................27200.051000010
............................TGGGCA---GAATAGGACTCTAGCGGTAAG....................................................................................................................................................................................................27200.051100000
............................TGGGCA---GAATAGGACTCTAGCGGTAAA....................................................................................................................................................................................................27200.051100000
...............................................................................................................TGGCAGTGCTAGGTTCTGAACGG........................................................................................................................23200.051100000
........................................................................................................................TAGGTTCTGAACGGTCTGGACGTC..............................................................................................................24200.051010000
...............TAGCAATGTCGGCTGGGCA---GAAT.....................................................................................................................................................................................................................23200.051100000
......................................................................................................................GCTAGGTTCTGAACGGTCTGGACGTTG.............................................................................................................27200.051100000
.......................TCGGCTGGGCA---GAATAGGACTCTAG...........................................................................................................................................................................................................25200.051100000
........................CGGCTGGGCA---GAATAGGACTCTAG...........................................................................................................................................................................................................24200.051100000
droBip1
GTTATTGGTTCCGATTAGCAAAGTCGGCTGGGCA---GAGTAGGACCGTAGCGGCAAGTCTTTCAAATGCTGGAATCTGTCGCATAGCTCCTTCATGTTGACTGTCTGTCTCGGTAGTGCTAGGTTCTGAACGGTCTGGACGTTGTTCAACCAGTAAACCTTATCGCAGTTCATTTCCGAGATTTGGAAAGATGCTTTCACGGATCCACTCTCGAG-----TCGAGTCGTCTCTGCGGTCCACTGCAAACACATSizeHit CountTotal NormTotal
No Reads
droKik1
ATTGTTTGTTCCGATTAACAAGGTTGGCTGCGCA---GAATAAGACTTTAGTGGCAGGTTCTTCAGGTAGCTATACTTACTGCGCAGTTCCTCTATATCAACAGTTTGTTTTGGCAGCGCGATGTTTTTTACAGTCTGAACATTGTTGAGCCAGAACCGTTTTTCTGAATTTTCCGCGGAAATCTGAATTGATGCGCGCACGGAAGTATCTTCGAA-----TCGTGTGGTTTCCCCAGTCCATTGTAAGCATATSizeHit CountTotal NormTotal
No Reads
droEle1
ATTATTTGTTCCAATCAGAAGCATTGGTTCAGCACTTGAATAAGACTTTAAGGGTATTCCATTTAGGTGCGGGTATTTGGCGGTTAACGTAAG-TCGTTGACAGTTTGTCTTGGTAGGCCCAAATTTTTGACTGTGTAAACGTTATTTAGCCAGTATGATTTTTGGTCGTCTGTTCCTGAGATTCGAATATTAAAGCGCACAGAGTTCCTTTCCAT-----TCTGTTGGTTTGATTAGTCCACTGCATACATATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTGTTTGTTCCAATTAATAACATTGGCTGCGCG---GAGTAGGTCTCTAATGGCAGGTCCTTTAGATAGCTGTACTTACTGCGCAACTCATCCATATCAACTGTTTGCTTTGGCAGTGCAATGTTTTTCACAGTATGAACGTTGTTGAGCCAGTAACGTGTTTCGGAGCTAACGCCTGAGATTTGGATTGATGCTTGCACGGATGTATTTTCGAA-----CCGGGTTGTTTCTCCAGTCCACTGTAAACAAATSizeHit CountTotal NormTotal
No Reads
droBia1
GTTATTCACTCCAACGATTATAGTTGGTCGCACGTTGGCATATGTGGAAATTGGTGTTCCTTAAAGGTACGGGAACTTCATGACGAGCTCCTCCATGTTGGCAGACTGCAATAGTAAGTTTAGGCTTCTGACGCTGCGAACATCTCTCTGTTTAAAAT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTTGTTTGTTCCAATTAATAACATTGGCTGCGTG---GAGTAGGTCTCTAATGGCAGGTCGTTTAGATAGCTGTACTTACTGCGCAACTCATCCATATCGACGGTTTGCTTTGGCAGTGCAATGTTTTGGACAGTCTGAACGTTGTTGAGCCAGTAACGTTTTTCTGAGCTAACGCCTGAGATTTGGATTGATGCTCGCACGGAAGTATTTTCGAA-----CCGGGTTGTTTCTCCAGTCCACTGCAAACAAATSizeHit CountTotal NormTotal
No Reads
dm3
GTTATTCGTACCAATCAAGAGCATTGGTTCAGCGTTCCAATAGGATTTCAAAGGAATTCCATTTATATGTTGGTATTTGGTGATCAGCTCATTTACGTTGACGGCCTGCTTGGGTAAACCCAAGTTTTTGAAGGCGTGAACGTCATTTAGCCAGTAAGATTT--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................TATATGTTGGTATTTGGTGATCAGC......................................................................................................................................................................2516.0060000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........CCAATCAAGAGCATTGGTTCAGCGTT..........................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000005
............................................................................................TTACGTTGACGGCCTGCTTGGGTAA.........................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..TATTCGTACCAATCAAGAGCATTGGT..................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000
..............................................................TTATATGTTGGTATTTGGTGATCAGC......................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010
.........ACCAATCAAGAGCATTGGTTCAGCGT...........................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TATTTGGTGATCAGCTCATTTACGTT...........................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000100000
............................................................ATTTATATGTTGGTATTTGGT.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000
...........................................................................TTTGGTGATCAGCTCATTTACGTT...........................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................TACGTTGACGGCCTGCTTGGGTAAA........................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................TACGTTGACGGCCTGCTTGGGTAAACC......................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000
............................................................................................................................TTTTTGAAGGCGTGAACGTCATTTAGC.......................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
....TTCGTACCAATCAAGAGCATTGGTT.................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TATGTTGGTATTTGGTGATCAGCTCATT.................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TAAACCCAAGTTTTTGAAGGCGTG....................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................TGGGTAAACCCAAGTTTTTGAAGGCGTG....................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTCGTACCAATCAAGAGCATTGGT..................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTCAAAGGAATTCCATTTATATGTTGGT....................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................ACCCAAGTTTTTGAAGGCGTGAACGTCA.............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................TACGTTGACGGCCTGCTTGGGTAA.........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TGTTGGTATTTGGTGATCAGCTCATT.................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.TTATTCGTACCAATCAAGAGC........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................TTGGGTAAACCCAAGTTTTTGAAGGCGTG....................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCAAGAGCATTGGTTCAGCGTTCCA.......................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGATCAGCTCATTTACGTTGACGGCC....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAAGTTTTTGAAGGCGTGAACG................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................TATATGTTGGTATTTGGTGATCAG.......................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................TTTTGAAGGCGTGAACGTCATTTAGCCA.....................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TTTATATGTTGGTATTTGGTGATCAG.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TTTGGTGATCAGCTCATTTACGT............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................TATTTGGTGATCAGCTCATTTACGT............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTATTCGTACCAATCAAGAGCATTGGT..................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTAAACCCAAGTTTTTGAAGGCGTG....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TTGGGTAAACCCAAGTTTTTGAAGGCG......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TAAACCCAAGTTTTTGAAGGCGTGAACG................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TACGTTGACGGCCTGCTTGGGTAAAC.......................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCATTGGTTCAGCGTTCCAATAGGA.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTTACGTTGACGGCCTGCTTGGG............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................TTACGTTGACGGCCTGCTTGGGTA..........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................TATTTGGTGATCAGCTCATTTACGTTG..........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................TTATATGTTGGTATTTGGTGATCAG.......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTTACGTTGACGGCCTGCTTGGGTAAA........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGAGCATTGGTTCAGCGTTCCA.......................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................TGGGTAAACCCAAGTTTTTGAAGGCG......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................GTAAACCCAAGTTTTTGAAGGCGTGAA..................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................GAACGTCATTTAGCCAGTAAGATT.............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GTTGGTATTTGGTGATCAGC......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................GAACGTCATTTAGCCAGTAAG................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................ATTGGTTCAGCGTTCCAATAGGA.................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCAAGAGCATTGGTTCAGCGTTCCA.......................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TATGTTGGTATTTGGTGATCAGCTCA...................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................TTTACGTTGACGGCCTGCTTGGGTAA.........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................CGTGAACGTCATTTAGCCAGT...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
GTTATTCGTACCAATCAAGAGCATTGGTTCAGCATTCCAATAGGATTTCAAAGGAATTCCATTTAAATGTTGGTATTTGGTGATCAGCACATTTACGTTGACGACCTGCT-----AAACCCAAGTTATTGACGGTGTGAACGTCATTTTGCCAGTAAGATTTA-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................TTTACGTTGACGACCTGCT-----AAACCCAAG..................................................................................................................................2811.00100000000100000000
droSec2
GTTATTCGTACCAATCAAGAGCATTGGTTCAGCATTCCAATAGGATTTCAAAGGAATTCCATTTAAATGTTGTTATTTGGTGATCAGCACATTTACGTTGACGACCTGCT-----AAACCCAAGTTCTTGACGGTGTGAACGTCATTTTGCCAGTAAAATTT--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............TCAAGAGCATTGGTTCAGCATTCCAA......................................................................................................................................................................................................................2620.5011000
droYak3
GTTGTTTGCGCCAATTAGAAGCATCGGTGAAGCATTCCAATATGATTTTATGGGCAATCCATGTAGGTGCTTGTATTTGCTGCCAAGTTTATGTGCGTCAATGGTTTGCTTAGGTAGGGCAAGGTGTTTGATTGAGTGCACGTTGTTGAGCCACAGTTTTCTTCCACTCCCCATCTCCGATATTTTTACCTGGGCTTTGAGAGACGTTTCCTCCGT-----ACGGGTGGTGTCTCCGGTCCACTGCAGACAAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................TGTCTCCGGTCCACTGCAGACAAAG25101.0010000000000010
.....................................................................................................................................................................................................TGAGAGACGTTTCCTCCGT-----ACGGGTGG.........................2711.00101000000000
...................................................................................................................................................................................................TTTGAGAGACGTTTCCTCCGT-----ACGGG............................2611.00101000000000
.........................................................................................................................................................CAGTTTTCTTCCACTCCCCATCTCC............................................................................25100.90909000000000
.........................................................................................................................................................CAGTTTTCTTCCACTCCCCATCTCCGA..........................................................................27100.80807100000000
...............................................................................................................................................................................................................TTCCTCCGT-----ACGGGTGGTGTCTCCGG................26110.73802000000006
............................................................................................................................TGTTTGATTGAGTGCACGTTGTTGAGC.......................................................................................................2760.33202000000000
..........................................................................................................TGCTTAGGTAGGGCAAGGTGTTTGAT..........................................................................................................................2670.29202000000000
.........................................................TCCATGTAGGTGCTTGTATTTGCTGCC..........................................................................................................................................................................2750.20101000000000
.........................................................................................................................................................CAGTTTTCTTCCACTCCCCATCTCCG...........................................................................26100.20202000000000
..........................................................................................................................................................AGTTTTCTTCCACTCCCCATCTCCGA..........................................................................26100.20202000000000
.........................................................................................................................................................CAGTTTTCTTCCACTCCCCATCTC.............................................................................24100.20202000000000
................................................................................................................................................................................................................TCCTCCGT-----ACGGGTGGTGTCTCCGGTC..............27110.18202000000000
...................................TCCAATATGATTTTATGGGCAATCCATG...............................................................................................................................................................................................2860.17101000000000
..............................................................................................................................TTTGATTGAGTGCACGTTGTTGAGCCA.....................................................................................................2760.17100000010000
..............................................................................................................................TTTGATTGAGTGCACGTTGTTGAGCC......................................................................................................2660.17101000000000
..TGTTTGCGCCAATTAGAAGCATCGGTG.................................................................................................................................................................................................................................2760.17101000000000
................................................TATGGGCAATCCATGTAGGTGCTTGTA...................................................................................................................................................................................2760.17101000000000
..............................................................................................................................................................................................................TTTCCTCCGT-----ACGGGTGGTGTCTCC..................25120.17201100000000
...............................................TTATGGGCAATCCATGTAGGTGCTTG.....................................................................................................................................................................................2660.17101000000000
........................................TATGATTTTATGGGCAATCCATG...............................................................................................................................................................................................2360.17101000000000
........................................TATGATTTTATGGGCAATCCATGTA.............................................................................................................................................................................................2560.17101000000000
................................................................................................................................TGATTGAGTGCACGTTGTTGAG........................................................................................................2260.17100000010000
................................................TATGGGCAATCCATGTAGGTGC........................................................................................................................................................................................2270.14100010000000
....................................................................................................................................TGAGTGCACGTTGTTGAGCCACAGTT................................................................................................2670.14101000000000
.......................................................................TGTATTTGCTGCCAAGTTTATGTG...............................................................................................................................................................2480.13101000000000
..TGTTTGCGCCAATTAGAAGCA.......................................................................................................................................................................................................................................2180.13101000000000
....................................................................................................................................................................................TATTTTTACCTGGGCTTTGAGAGA..................................................2490.11100100000000
...............................................................................................................................................................................TCCGATATTTTTACCTGGGCTTTGAGA....................................................2790.11101000000000
.......................................................................................................................................................................................TTTTACCTGGGCTTTGAGAGA..................................................2190.11101000000000
....................................................................................................................................................................................................................................GTGTCTCCGGTCCACTGCAGACAAAG26100.10101000000000
........................................................................................................................................................ACAGTTTTCTTCCACTCCCCATCTCC............................................................................26100.10101000000000
........................................................................................................................................TGCACGTTGTTGAGCCACAGTTTTCT............................................................................................26100.10101000000000
...........................................................................................................................................................GTTTTCTTCCACTCCCCATCTC.............................................................................22100.10101000000000
.................................................................................................................................................................TTCCACTCCCCATCTCCGATATTTT....................................................................25100.10101000000000
...............................................................................................................................................................................TCCGATATTTTTACCTGGGCTTTG.......................................................24100.10101000000000
.......................................................................................................................................................CACAGTTTTCTTCCACTCCCCATCTCCGA..........................................................................29100.10101000000000
.......................................................................................................................................................................................................................T-----ACGGGTGGTGTCTCCGGTCCACTGCA.......27100.10101000000000
...................................................................................................................................................................................................................TCCGT-----ACGGGTGGTGTCTCCGGTCC.............25110.09100100000000
................................................................................................................................................................................................................TCCTCCGT-----ACGGGTGGTGTCTCCGG................25110.09101000000000
.............................................................................................................................................................TTTCTTCCACTCCCCATCTCC............................................................................21110.09101000000000
...................................................................................................................................................................................................................TCCGT-----ACGGGTGGTGTCTCCGGTC..............24110.09101000000000
..............................................................................................................................................................................................................TTTCCTCCGT-----ACGGGTGGTGTCTCCGG................27110.09101000000000
.........................................................................................................................................................CAGTTTTCTTCCACTCCC...................................................................................18110.09101000000000
...............................................................................................................................................................................................................TTCCTCCGT-----ACGGGTGGTGTCTCCGGTC..............28110.09101000000000
...............................................................................................................................................................................................................TTCCTCCGT-----ACGGGTGGTGTCTCCGT................26110.09100000000001
...................................................................................................................................................................................................................TCCGT-----ACGGGTGGTGTCTCCGGTCCA............26110.09101000000000
.......................................................................................................................................................................................................................T-----ACGGGTGGTGTCTCCGGTCCAC...........23120.08101000000000
...............................................................................................................................................................................................................TTCCTCCGT-----ACGGGTGGTGTCTCC..................24120.08100100000000
.......................................................................................................................................................................................................................T-----ACGGGTGGTGTCTCCGGTCCACT..........24120.08101000000000
...............................................................................................................................................................................................................TTCCTCCGT-----ACGGGTGGTGTC.....................21120.08101000000000
droEre2
GTTATTCGTACCAATCAATAT--------------TGCAATATGATTTTAAAGGAATTCCATTTAAATGTGGGTATTTGGTGATCAGCTCATTAACGTTGACGGTTTGCTGTGGTAAACCCAAGTTATTGACGGTGGGAACGTCATTTAGTCAGTAAGTTTTTGTATTGTCTGCCCCAGAGACTCGTATATTGAAGCGAACTGAGTTTCTTCCCAT-----CCTTGTGGTTTGATTGGTCCACTGCATGCATAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................TGAGTTTCTTCCCAT-----CCTTGTGGTT.......................2511.0011000000
droWil2
ATTGTTGCTGCCGATGAAAATTAGTGGTGTACCGTTTTGGTACGACTTTAGCGGCAAACCACGCAAATAAGGATATTGCTTGGATAGTTCTTCAACATTGATGGTTTGTTTCGGCAATCCTAATTTCTTTACTGAGTGGACGTTGTAGAGCCAT-ACCTTTTGTCAGTTCCCGCTTCCGAGATTTGTAGGTGGGTCTTAACGGAGTCCTCTTCGTT-----TCTGGTTTCTTCACCGGTCCATTGCAGGCAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGCCA.....................................................................................................2684.88390152202
...............................................................................................................................................TGTAGAGCCAT-ACCTTTTGTCAGT......................................................................................2413.00302010
..TGTTGCTGCCGATGAAAATTAGTGG...................................................................................................................................................................................................................................2512.00200020
................................................................................TGGATAGTTCTTCAACATTGATGGTT....................................................................................................................................................2652.001008020
....................................................................................TAGTTCTTCAACATTGATGGTTTGTT................................................................................................................................................2651.20605001
....................................................................................................................................TGAGTGGACGTTGTAGAGCCAT-ACCT...............................................................................................2611.00101000
..............TGAAAATTAGTGGTGTACCGTTTTGG......................................................................................................................................................................................................................2611.00101000
.........................................................................................................................................................T-ACCTTTTGTCAGTTCCCGCTTCCG...........................................................................2511.00101000
...............................................................................................................................................TGTAGAGCCAT-ACCTTTTGTCAGTT.....................................................................................2511.00100010
........................................TACGACTTTAGCGGCAAACCACGCA.............................................................................................................................................................................................2541.00404000
................................................................................TGGATAGTTCTTCAACATTGATGGT.....................................................................................................................................................2550.80404000
....................................................................................TAGTTCTTCAACATTGATGGTTTGT.................................................................................................................................................2550.80401120
...................................................................TAAGGATATTGCTTGGATAGTTCT...................................................................................................................................................................2440.75302010
.................................................................................................................................TACTGAGTGGACGTTGTAGAGCCA.....................................................................................................2480.63503110
..............................................................................................................................................................................................TGGGTCTTAACGGAGTCCTCTTCGT.......................................2590.56503020
........................................................................................................................................................................................TGTAGGTGGGTCTTAACGGAGTCCT.............................................2590.56501130
...................................................................TAAGGATATTGCTTGGATAGTTCTTCA................................................................................................................................................................2740.50202000
................................................................................................................................TTACTGAGTGGACGTTGTAGAGCCA.....................................................................................................2580.50402020
...................................................................TAAGGATATTGCTTGGATAGTTCTTC.................................................................................................................................................................2640.50201010
.............................................................................................................................................................................................................TCCTCTTCGTT-----TCTGGTTTCTTCACCGG................2880.50404000
............................................................................................................................TTCTTTACTGAGTGGACGTTGTAGAG........................................................................................................2690.44404000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGC.......................................................................................................2490.44402020
........................................................................................................................................................................................TGTAGGTGGGTCTTAACGGAGTCC..............................................2490.44401030
..............................................................................................................................................................TTTTGTCAGTTCCCGCTTCCGAGATT......................................................................26100.40404000
................................................................................................................................................................................................................TCTTCGTT-----TCTGGTTTCTTCACCGG................2580.38303000
.....................................................................................................................TCCTAATTTCTTTACTGAGTGGACGTTG.............................................................................................................2860.33202000
............................................................................................................................TTCTTTACTGAGTGGACGTTGTAGA.........................................................................................................2590.33303000
.....................................................................................................................TCCTAATTTCTTTACTGAGTGGACG................................................................................................................2560.33202000
..............................................................................................................................................................TTTTGTCAGTTCCCGCTTCCGAGAT.......................................................................25100.30302010
..........................................................................................TTCAACATTGATGGTTTGTTTCGGCA..........................................................................................................................................2670.29202000
..........................................................................................TTCAACATTGATGGTTTGTTTCGGCAA.........................................................................................................................................2770.29201010
................................................TAGCGGCAAACCACGCAAATAAGGATAT..................................................................................................................................................................................2840.25101000
...................................................................TAAGGATATTGCTTGGATAG.......................................................................................................................................................................2040.25101000
....................................................................AAGGATATTGCTTGGATAGTTCTTC.................................................................................................................................................................2540.25101000
........................................TACGACTTTAGCGGCAAACCACGCAAA...........................................................................................................................................................................................2740.25101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGCC......................................................................................................2580.25202000
........................................TACGACTTTAGCGGCAAACCACG...............................................................................................................................................................................................2340.25101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGCCAT-...................................................................................................2780.25200020
........................................TACGACTTTAGCGGCAAACCACGCAA............................................................................................................................................................................................2640.25101000
...............................................................................................................................................................................................................................TGGTTTCTTCACCGGTCCATTGCAGG.....2680.25202000
...............................................................................................................................................................................TCCGAGATTTGTAGGTGGGTCTTAAC.....................................................2690.22202000
......................................................................................................................................................................................TTTGTAGGTGGGTCTTAACGGAGTCC..............................................2690.22202000
.......................................................................................................................................................................................TTGTAGGTGGGTCTTAACGGAGTCC..............................................2590.22201010
..................................................................................GATAGTTCTTCAACATTGATGGTT....................................................................................................................................................2450.20101000
...............................................................................TTGGATAGTTCTTCAACATTGATGGT.....................................................................................................................................................2650.20100010
................................................................................TGGATAGTTCTTCAACATTGATGGTTG...................................................................................................................................................2750.20101000
................................................................................TGGATAGTTCTTCAACATTGATGGTTT...................................................................................................................................................2750.20100010
............................................................................TGCTTGGATAGTTCTTCAACATTGATGG......................................................................................................................................................2850.20101000
................................CGTTTTGGTACGACTTTAGCGGCAA.....................................................................................................................................................................................................2550.20101000
............................................................................TGCTTGGATAGTTCTTCAACA.............................................................................................................................................................2150.20101000
...............................................................................TTGGATAGTTCTTCAACATTGATGG......................................................................................................................................................2550.20100010
................................................................................TGGATAGTTCTTCAACATTGATGGTTAA..................................................................................................................................................2850.20101000
....................................................................................TAGTTCTTCAACATTGATGGTTTGTTT...............................................................................................................................................2750.20101000
................................................................................TGGATAGTTCTTCAACATTGATGGTTC...................................................................................................................................................2750.20100010
.................................................................................................................................................................TGTCAGTTCCCGCTTCCGAGATTTG....................................................................25100.20201010
.............................TACCGTTTTGGTACGACTTTAGCGGCA......................................................................................................................................................................................................2750.20101000
................................................................................TGGATAGTTCTTCAACATTGATGG......................................................................................................................................................2450.20100010
.....................................................................................................................TCCTAATTTCTTTACTGAGTGGACGT...............................................................................................................2660.17101000
..........................................................................................................TGTTTCGGCAATCCTAATTTCTTTACTGA.......................................................................................................................2960.17101000
.............................................................................................................TTCGGCAATCCTAATTTCTTTACTGAG......................................................................................................................2760.17101000
.....................TAGTGGTGTACCGTTTTGGTACGACT...............................................................................................................................................................................................................2660.17100010
....................TTAGTGGTGTACCGTTTTGG......................................................................................................................................................................................................................2060.17101000
.........................................................................................................TTGTTTCGGCAATCCTAATTTCTTTAC..........................................................................................................................2760.17101000
..........................................................................................................TGTTTCGGCAATCCTAATTTCTTTA...........................................................................................................................2560.17101000
..........................................................................................................TGTTTCGGCAATCCTAATTTCTTTAC..........................................................................................................................2660.17101000
.............................................................................................................TTCGGCAATCCTAATTTCTTTACTGAGT.....................................................................................................................2860.17101000
.............................................................................................AACATTGATGGTTTGTTTCGGCAATC.......................................................................................................................................2670.14100010
.............................................................................................................................................................................................................................TCTGGTTTCTTCACCGGTCCATTGCAG......2770.14101000
.............................................................................................AACATTGATGGTTTGTTTCGGC...........................................................................................................................................2270.14101000
..........................................................................................TTCAACATTGATGGTTTGTTTCGGC...........................................................................................................................................2570.14101000
........................................................................................TCTTCAACATTGATGGTTTGTTTCGGCA..........................................................................................................................................2870.14101000
...........................................................................................TCAACATTGATGGTTTGTTTCGGCAA.........................................................................................................................................2670.14101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGCCT.....................................................................................................2680.13100010
..............................................................................................................................CTTTACTGAGTGGACGTTGTAGAGCCAT-...................................................................................................2880.13101000
...................................................................................................................................................................................................................................TTCTTCACCGGTCCATTGCAGGCA...2480.13101000
...................................................................................................................................................................................................................TCGTT-----TCTGGTTTCTTCACCGGTCCA............2680.13101000
..............................................................................................................................CTTTACTGAGTGGACGTTGTAGAGCCA.....................................................................................................2780.13101000
.....................................................................................................................................................................................................TAACGGAGTCCTCTTCGTT-----TCTGG............................2480.13101000
............................................................................................................................TTCTTTACTGAGTGGACGTTGTAGAGCC......................................................................................................2880.13101000
...............................................................................................................................................................................................................................TGGTTTCTTCACCGGTCCATTGCAG......2580.13101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGCCAA-...................................................................................................2780.13101000
.................................................................................................................................TACTGAGTGGACGTTGTAGAGCCAT-TA.................................................................................................2780.13101000
..................................................................................................................................................................................................................TTCGTT-----TCTGGTTTCTTCACCGGTCC.............2680.13101000
.................................................................................................................................TACTGAGTGGACGTTGTAGAGCC......................................................................................................2380.13101000
...................................................................................................................................................................................................................TCGTT-----TCTGGTTTCTTCACCGGTCCAT...........2780.13101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAGCCTA-...................................................................................................2780.13101000
...................................................................................................................................................................................................................TCGTT-----TCTGGTTTCTTCACCGGTCC.............2580.13101000
.............................................................................................................................................................................................................................TCTGGTTTCTTCACCGGTCCATTGC........2580.13101000
.......................................................................................................................................................................................................................T-----TCTGGTTTCTTCACCGGTCCAT...........2380.13101000
.................................................................................................................................TACTGAGTGGACGTTGTAGAGCCAT-A..................................................................................................2680.13100010
...........................................................................................................................................................................................AGGTGGGTCTTAACGGAGTCCTCTTCGT.......................................2890.11101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGAG........................................................................................................2390.11101000
...........................................................................................................................TTTCTTTACTGAGTGGACGTTGTAG..........................................................................................................2590.11101000
........................................................................................................................................................................................TGTAGGTGGGTCTTAACGGAGTCCTCT...........................................2790.11101000
..............................................................................................................................................................................TTCCGAGATTTGTAGGTGGGTCTTAA......................................................2690.11101000
...............................................................................................................................................................................................GGGTCTTAACGGAGTCCTCTTCGT.......................................2490.11101000
........................................................................................................................................................................................TGTAGGTGGGTCTTAACGGAGTCCTC............................................2690.11101000
......................................................................................................................................................................................TTTGTAGGTGGGTCTTAACGGAGTCCTT............................................2890.11100100
.............................................................................................................................TCTTTACTGAGTGGACGTTGTAGAG........................................................................................................2590.11101000
.......................................................................................................................................................................................TTGTAGGTGGGTCTTAACGGAGTCCTC............................................2790.11101000
...............................................................................................................................TTTACTGAGTGGACGTTGTAGA.........................................................................................................2290.11100010
.......................................................................................................................................................................................TTGTAGGTGGGTCTTAACGGAGTCCT.............................................2690.11101000
.......................................................................................TTCTTCAACATTGATGGTTTGTTT...............................................................................................................................................2490.11101000
.......................................................................................................................................................................................TTGTAGGTGGGTCTTAACGGAGTC...............................................2490.11101000
..........................................................................................................................................................................................TAGGTGGGTCTTAACGGAGTCCTCT...........................................2590.11101000
........................................................................................................................................................................TCCCGCTTCCGAGATTTGTAGGTG..............................................................24100.10101000
......................................................................................................................................................................................TTTGTAGGTGGGTCTTAACGGAG.................................................23100.10100010
...............................................................................................................................................................TTTGTCAGTTCCCGCTTCCGAGATTTG....................................................................27100.10101000
..................................................................................................................................................................GTCAGTTCCCGCTTCCGAGATTTG....................................................................24100.10101000
................................................................................................................................................................TTGTCAGTTCCCGCTTCCGAGATT......................................................................24100.10101000
........................................................................................................................................................................TCCCGCTTCCGAGATTTGTAGGT...............................................................23100.10101000
..............................................................................................................................................................TTTTGTCAGTTCCCGCTTCCGAGATTG.....................................................................27100.10101000
.........................................................................................................................AATTTCTTTACTGAGTGGACGTTG.............................................................................................................24100.10101000
.......................................................................................................................................................................................TTGTAGGTGGGTCTTAACGGA..................................................21100.10101000
.................................................................................................................................................................TGTCAGTTCCCGCTTCCGAGATT......................................................................23100.10101000
..............................................................................................................................................................TTTTGTCAGTTCCCGCTTCCGAGATTTG....................................................................28100.10101000
.................................................................................................................................................................TGTCAGTTCCCGCTTCCGAGATTTGTA..................................................................27100.10101000
........................................................................................................................................................................TCCCGCTTCCGAGATTTGTAGG................................................................22100.10100010
...................................................................................................................................................................TCAGTTCCCGCTTCCGAGATTTGTAGG................................................................27100.10101000
..............................................................................................................................................................................TTCCGAGATTTGTAGGTGGGTCT.........................................................23110.09101000
...............................................................................................................................................................................TCCGAGATTTGTAGGTGGGTCT.........................................................22110.09101000
..............................................................................................................................................................................TTCCGAGATTTGTAGGTGGGT...........................................................21110.09100010
droVir3
GTTGTCCTAGCCGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads

Generated: 05/18/2015 at 02:35 AM