dan_1627

Name	Class	Family	Strand
R1B_DAn	LINE	R1	-
R1B_DAn	LINE	R1	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAGACGAGGACTTTTCCTTCCTCTTCGGCAAACCGCGGCAATCACTGCTGGTCAGTGACCATACCGCTCGAAAACGCCCAACTGTGTTCCCAAAAACCCCTAAGGGGCTTGTGACAAGGCGGAGTTGGAACACCATTTCCGTAGTTTCTTATCACCCGTGCCAAGTGCCGATTATGTAAGAATGCATTCAGCAATCCATGGCCAGTCAACAGGAATCCGACACTGAGGTTAAAACCAAAGTCCGGTCGGTC ********************************************************************************.....................((.((..((((.(((((((((.(((....))).)))))).....))).))))..)).))...************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V055 head	V106 head	V039 embryo	V105 male body
......................................................................................................................................................................................TGCATTCAGCAATCCATGGCCAGTCA...........................................	26	0	1	2.00	2	1	1	0	0	0	0
.........................................................................................................................................TCCGTAGTTTCTTATCACCCGTGCCAAG......................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................GACAAGGCGGAGTTGGAACACCATT..................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
........GACTTTTCCTTCCTCTTCGGCAAA...........................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.............................................................................................................TGCGACAAGGCGGAGTTGGAACACCAT...................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TTATCACCCGTGCCAAGTGCCGATT..............................................................................	25	0	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TTATCACCCGTGCCAAGTGCCGATTATG...........................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.................TTACTCTTCGGCAAACCGCGGCAATC................................................................................................................................................................................................................	26	1	1	1.00	1	0	1	0	0	0	0
..................................................................................TGTGTTCCCAAAAACCCCTAAGGGGCTT.............................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................CAGTCAACAGGAATCCGACACTGAGG.......................	26	0	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................ATTGCCGTGGTTTCTTATC..................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0
................................CCGCGGTAATCACCGCTGG........................................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0
...........................................AATGATGGTCAGTAACCATA............................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0
...........................................................................................................................GTTGTAACACAGTTTCCGTA............................................................................................................	20	3	10	0.10	1	0	0	0	0	1	0
..................................................................................................................................................................................................TCCATGGCCAGTCAACAGGAAACC.................................	24	1	12	0.08	1	0	1	0	0	0	0
..................................................................................................GCTAAGGGGTGTGTGACAA......................................................................................................................................	19	3	15	0.07	1	0	0	1	0	0	0
............................................................................................................TTGTGACAAGGCGGAGTTGG...........................................................................................................................	20	0	17	0.06	1	0	0	0	0	0	1
.............................................................................................................TGTGACAAGGCGGAGTTGG...........................................................................................................................	19	0	17	0.06	1	0	1	0	0	0	0

CTCTGCTCCTGAAAAGGAAGGAGAAGCCGTTTGGCGCCGTTAGTGACGACCAGTCACTGGTATGGCGAGCTTTTGCGGGTTGACACAAGGGTTTTTGGGGATTCCCCGAACACTGTTCCGCCTCAACCTTGTGGTAAAGGCATCAAAGAATAGTGGGCACGGTTCACGGCTAATACATTCTTACGTAAGTCGTTAGGTACCGGTCAGTTGTCCTTAGGCTGTGACTCCAATTTTGGTTTCAGGCCAGCCAG ************************************************************************************.....................((.((..((((.(((((((((.(((....))).)))))).....))).))))..)).))...********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V055 head	M044 female body	V039 embryo	V106 head
.........................................................................................................................................................................CTAATACATTCTTACGTAAGTCGTTA........................................................	26	0	1	1.00	1	1	0	0	0	0
..............................................................TGGCGACATTTTGCGGGTT..........................................................................................................................................................................	19	2	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................CGGTCAGTTGTCCTTAGGCTGTGACT.........................	26	0	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................TCACGGCTAATACATTCTTACGTAAG..............................................................	26	0	1	1.00	1	1	0	0	0	0
..................................................................................................GGATTCCCCGAACACTGTTCATC..................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0
.................................GCGCCGTTAGTGACGACCAGTC....................................................................................................................................................................................................	22	0	2	0.50	1	0	0	0	1	0
.......................................................................TTTGGGGGTCGACACAAGG.................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0
............AAAGGAAGGGGAAGTCGTTT...........................................................................................................................................................................................................................	20	2	4	0.25	1	1	0	0	0	0
.....................................................................................................................................................................ACGGATAATTCATTGTTACG..................................................................	20	3	4	0.25	1	0	1	0	0	0
....................GAGAAGCAGATTGGCGCC.....................................................................................................................................................................................................................	18	2	4	0.25	1	0	1	0	0	0
......TCCTGAAAATGAAGGAGA...................................................................................................................................................................................................................................	18	1	5	0.20	1	0	1	0	0	0
...............................................................GGCGACCGTTTGCGGGTT..........................................................................................................................................................................	18	2	7	0.14	1	0	1	0	0	0
......................................................................CTTTGCGCGTCGACACAAGG.................................................................................................................................................................	20	3	11	0.09	1	0	1	0	0	0
...........................................................GTATGGGGATCTGTTGCGG.............................................................................................................................................................................	19	3	14	0.07	1	0	0	1	0	0
......TGCAGAAAAGGAAGGAGA...................................................................................................................................................................................................................................	18	2	18	0.06	1	0	1	0	0	0
............AAAGGAAGGAGAAGGTGTT............................................................................................................................................................................................................................	19	2	20	0.05	1	0	0	1	0	0
................................................................................................................................TGGTGGTAAGGGCATCAAC........................................................................................................	19	3	20	0.05	1	0	0	0	0	1
.......................................................................................................................................................AGTGGGCAAGGGGCACGGC.................................................................................	19	3	20	0.05	1	0	1	0	0	0
.............................................CCGACCAAACACTGGTATG...........................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13250:3448272-3448522 +	dan_1627	GAGACGAGGACTTTTCCTTCCTCTTCGGCAAACCGCGGCAATCACT-GCTGGTCAGTGACCATACCGCTCGAAAACGCCCAACTG-TGTTCCCAAAAACCCCTAAGGGGCTTGTG---------ACAA---GGCGGAGTTGGAACACCATTTCCGTAGTTT--------------------------------------------------------------------------------------C--TT------------------------------------------ATCACCCGTGCCAAGTGCCGATTATGTAAGAATGCATTCAGCAATCCATGGC-CAGTCAACAGGAATCCGACACTGAGGTTAAAACCAAAGTCCGGTCGGTC
droBip1	scf7180000393531:53985-54278 -		AAGGCTAGAACTATTCCTTCCTCTGCCACAACTCGCGGCACTCGCT-GCTGGCCAATGACCAGACCGTTCGAAGACGGCCAGCTA-TGTTCTCAACAATCATTAAG-----------------AACAA---GGCGGAGTTGGG-CCCGATCTCCGTAGTT-----------GATATATTGGTACTAGTCCTCTG------------GTCAGGTTTGTGCAACTAAAAGAAGAACCCTTAGAAGAACCC--TG------------------------------------------GTCACCTC-----GGCGGTGGGAACGCAAGAATGCAGTCAGCAAA------C-CAGTCAACCGGAACCCGGCGCTGAGGCTATAACCAAAGTCCGGTCGGTA
droKik1	scf7180000300773:409-487 +		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAGGAAATCATTCAGAGACCCATGAC-CAGTCAGCAAAAAACCTAAACTAAGGTTGAACCCAAAGTCTTGGCAATT
droFic1	scf7180000452029:1280-1368 -		AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCTCTCATAGAGAAATGCGTTCAGCGATCCGTGAC-CCGTCAGCAAGAAATCGGCCCGTAGGTTAAAACCGAAGTCTTTCCTGTG
droEle1	scf7180000486864:3104-3177 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATGCGTTCAGCGACCCATGTC-CTGTCAGCAAAAATCCGGCTCTTAGGGTAAAACCAAAGTCTTTCCTATT
droBia1	scf7180000298243:886-980 +		GTGCTGAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACCATGAAGGAAAGCGTTGAACGACCCGTGTC-CTGTCAGCAAGAATCCGGCTCTTAAGGTGAAGACAAAGTCCTTCCTCTT
droTak1	scf7180000411220:1246-1274 -		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGGGTAAAACCAAAGTCTTTCCTATT
droEug1	scf7180000407679:1610-1688 +		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGAAATGCATTGAACGACCCATGCC-CTGTCATCAGGAATCCTGCGCGCATCGAAAAACCGAAATTCCGATTCCG
dm3	chr3LHet:486007-486088 +		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCAGGAATGCGTTCAACGATACGTGCCCCCGTCAACAGGAATCCGGCGCGTAGTGAAAACCCGAAGTCTCGCTCGCT
droSim2	node_38189:17798-17887 -		CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCTATTATGTAGGAATGCGTTCAACGATCCGTTGC-CTGTCAGCAAGAATCCGGCGTGTAGTGAAAAACCGAAGTCTCGCTCGCT
droSec2	scaffold_123:66846-66926 -		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCAGGAATGAGTTCCACGATCCGTGGC-CCGTCAGAAAGAATCCGGCGCGTAGTGAAAAACCGAAGTCTCGCTCGCT
droYak3	X:20901701-20901777 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAAATGCATTAAACGACCCGTGCC-CAGTAAGCAGGAAAGACGCCTTCATCGAGAAACCAAGATTTGGATCCCG
dp5	Unknown_singleton_3450:8-85 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGGAATGCATTGAGAGAGCCGTGAC-CAGTCAAGAGGAACCCAGAACTAAGGTTTAAACCAAACTCCGGTCGACA
droPer2	scaffold_623:6-83 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGGAATGCATTGAAAGAACCGTGAC-CAGTCAAGAGGAACCCAGAACTAAGGTTTAAACCAAACTCCGGTCGACA
droWil2	scf2_1100000005572:194-273 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATACAGGAATGCATTCAGCGATCCATGGC-CAGTCAGCAAGAATCCACCGTGAAGTCCAAAACCAAAGTCCTTCCGGCT
droVir3	scaffold_13036:436596-436842 -		GAG-GGAGGCTTATTCCTGCCTCTTCCGCAAATGACGGCAATTTCAAGTTGATCACAGATCAAACCGCT---ATGCGGCCAGCTAGTGTCCCCAACAAGTCCCAAAAGACT-ATGGCGGAGGGAGCAGATAGCCG--------AGACCGCCTCTAT-GTTCCCTAACGCCAGACCAGTCAGACAAAACACACTCTTTCACCAATCTCTT---------------------GCATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------ATCCCTACCCGCTAGCCAATCATTC
droMoj3	scaffold_6499:263908-263985 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAGAATGCATTGAGGGAACCGTGAC-CAGTCAACAGGAATCCAAGACTCAGGCCGAACCCAAAGTCTGGTCGGCT
droGri2	scaffold_9914:2924-3256 +		GAG-CGAGGCCTATTCCTTCCTCTTCCGCAAACACCGGCATTCATA-ACTGAACGAA-----------TTCAGACCGGCGAGCTGATATCCCCAACAAC---------------AGCGCTGAGAGCCGAGGGTCG--------AGACCGCCCCTGA-ACACCCCA------AACGCGTTATCCCAAGCACACTTA------GATCTCTCAGATCTGCAT----ACAAAGGGCACTCACAG--AGAACA--TGTTCCCATGTCTCTCCCACCCAGCCACAAGGGCATTCCGGGCTATCACAAA-----GTCGTCTTGAATGCAAGAATGCGTTCAGAGACCCGTGGC-CCGTCAACAAAAATCCAAAACTCAGGTGAAGCCTGAAGTCTGGACGGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GAGACGAGGACTTTTCCTTCCTCTTCGGCAAACCGCGGCAATCACT-GCTGGTCAGTGACCATACCGCTCGAAAACGCCCAACTG-TGTTCCCAAAAACCCCTAAGGGGCTTGTG---------ACAA---GGCGGAGTTGGAACACCATTTCCGTAGTTT--------------------------------------------------------------------------------------C--TT------------------------------------------ATCACCCGTGCCAAGTGCCGATTATGTAAGAATGCATTCAGCAATCCATGGC-CAGTCAACAGGAATCCGACACTGAGGTTAAAACCAAAGTCCGGTCGGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCAATCCATGGC-CAGTCA...........................................	26	1	2.00	2	1	1	0	0	0	0
.......................................................................................................................................................TCCGTAGTTT--------------------------------------------------------------------------------------C--TT------------------------------------------ATCACCCGTGCCAAG.......................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................G---------ACAA---GGCGGAGTTGGAACACCATT.....................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........GACTTTTCCTTCCTCTTCGGCAAA............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................TT------------------------------------------ATCACCCGTGCCAAGTGCCGATT...............................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................TT------------------------------------------ATCACCCGTGCCAAGTGCCGATTATG............................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................TG-TGTTCCCAAAAACCCCTAAGGGGCTT............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAGTCAACAGGAATCCGACACTGAGG.......................	26	1	1.00	1	0	1	0	0	0	0
..............................................................................................................TTGTG---------ACAA---GGCGGAGTTGG..............................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	1	0
...............................................................................................................TGTG---------ACAA---GGCGGAGTTGG..............................................................................................................................................................................................................................................................	19	17	0.06	1	0	1	0	0	0	0

droBip1

AAGGCTAGAACTATTCCTTCCTCTGCCACAACTCGCGGCACTCGCT-GCTGGCCAATGACCAGACCGTTCGAAGACGGCCAGCTA-TGTTCTCAACAATCATTAAG-----------------AACAA---GGCGGAGTTGGG-CCCGATCTCCGTAGTT-----------GATATATTGGTACTAGTCCTCTG------------GTCAGGTTTGTGCAACTAAAAGAAGAACCCTTAGAAGAACCC--TG------------------------------------------GTCACCTC-----GGCGGTGGGAACGCAAGAATGCAGTCAGCAAA------C-CAGTCAACCGGAACCCGGCGCTGAGGCTATAACCAAAGTCCGGTCGGTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAGGAAATCATTCAGAGACCCATGAC-CAGTCAGCAAAAAACCTAAACTAAGGTTGAACCCAAAGTCTTGGCAATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCTCTCATAGAGAAATGCGTTCAGCGATCCGTGAC-CCGTCAGCAAGAAATCGGCCCGTAGGTTAAAACCGAAGTCTTTCCTGTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATGCGTTCAGCGACCCATGTC-CTGTCAGCAAAAATCCGGCTCTTAGGGTAAAACCAAAGTCTTTCCTATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTGCTGAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACCATGAAGGAAAGCGTTGAACGACCCGTGTC-CTGTCAGCAAGAATCCGGCTCTTAAGGTGAAGACAAAGTCCTTCCTCTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGGGTAAAACCAAAGTCTTTCCTATT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGAAATGCATTGAACGACCCATGCC-CTGTCATCAGGAATCCTGCGCGCATCGAAAAACCGAAATTCCGATTCCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCAGGAATGCGTTCAACGATACGTGCCCCCGTCAACAGGAATCCGGCGCGTAGTGAAAACCCGAAGTCTCGCTCGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................TGCAGGAATGCGTTCAACGATACGTGC...................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAAACCCGAAGTCTCG......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................ACGATACGTGCCCCCGTCAAC.........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATGCAGGAATGCGTTCAACG...........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TCCGGCGCGTAGTGAAAACCCGAAGTC.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CCGGCGCGTAGTGAAAACCCGAAGTC.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATGCGTTCAACGATACGTGCC..................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTCAACAGGAATCCGGCGC............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATCCGGCGCGTAGTGAAAACC................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCTATTATGTAGGAATGCGTTCAACGATCCGTTGC-CTGTCAGCAAGAATCCGGCGTGTAGTGAAAAACCGAAGTCTCGCTCGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................TCTATTATGTAGGAATGCGTTCAACGA..........................................................	27	1	3.00	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TGC-CTGTCAGCAAGAATCCGGCGTG...........................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGTCAGCAAGAATCCGGCGTGTAGTGA.....................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGTAGTGAAAAACCGAAGTCTCGCT....	25	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CTCTATTATGTAGGAATGCGTTCAACGA..........................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTGTAGTGAAAAACCGAAGTCTCGCT....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGTCAGCAAGAATCCGGCGTGTA.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AAGAATCCGGCGTGTAGTGAAAAACC...............	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTATGTAGGAATGCGTTCAACGATC........................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CAACGATCCGTTGC-CTGTCAGCAAGAA....................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAAACCGAAGTCTCGCTCGCA	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCGTTCAACGATCCGTTGC-CTGT.............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CTCTATTATGTAGGAATGCGTTCAAC............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TTGC-CTGTCAGCAAGAATCCGGCGTG...........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCAGGAATGAGTTCCACGATCCGTGGC-CCGTCAGAAAGAATCCGGCGCGTAGTGAAAAACCGAAGTCTCGCTCGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAAATGCATTAAACGACCCGTGCC-CAGTAAGCAGGAAAGACGCCTTCATCGAGAAACCAAGATTTGGATCCCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................GTAAGCAGGAAAGACGCCTTCATCGAG....................	27	6	2.17	13	0	0	0	0	0	0	0	0	0	0	13
...........................................................................................................................................................................................................................................................................................................................................TAAACGACCCGTGCC-CAGTAAGCAGGT.....................................	27	8	1.63	13	0	0	0	0	0	0	0	0	0	0	13
...........................................................................................................................................................................................................................................................................................................................................................CAGTAAGCAGGAAAGACGCCTTCATCG......................	27	7	1.43	10	0	0	0	0	0	0	0	0	0	0	10
..........................................................................................................................................................................................................................................................................................................................................TTAAACGACCCGTGCC-CAGTAAGCAGG......................................	27	8	1.25	10	0	3	0	0	0	0	0	0	0	0	7
..............................................................................................................................................................................................................................................................................................................................................................TAAGCAGGAAAGACGCCTTCATCGAGA...................	27	6	1.17	7	0	5	0	0	0	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................CAGTAAGCAGGAAAGACGCCTTCATCGA.....................	28	7	1.14	8	0	1	0	0	0	0	0	0	0	0	7
...............................................................................................................................................................................................................................................................................................................................................................................TTCATCGAGAAACCAAGATTTGGAC....	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCATCGAGAAACCAAGATTTGGATCC..	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TCGAGAAACCAAGATTTGGATCC..	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TAAACGACCCGTGCC-CAGTAAGCAGG......................................	26	8	0.63	5	0	3	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GAAAGACGCCTTCATCGAGAAACCA..............	25	7	0.43	3	0	3	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AAACGACCCGTGCC-CAGTAAGCAGG......................................	25	8	0.38	3	0	2	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGCC-CAGTAAGCAGGAAAGACGCCTTCA.........................	28	7	0.29	2	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGCC-CAGTAAGCAGGAAAGACGCCTT...........................	26	7	0.29	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GGAAAGACGCCTTCATCGAGAAACCAA.............	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GAAAGACGCCTTCATCGAGAAACC...............	24	8	0.25	2	0	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TAAGCAGGAAAGACGCCTTCATCGAG....................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAAGACGCCTTCATCGAGAAACCA..............	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................GAAAGACGCCTTCATCGAGAAACCAA.............	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGCC-CAGTAAGCAGGAAAGACGCCTTC..........................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CC-CAGTAAGCAGGAAAGACGCCTTCA.........................	26	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................AGTAAGCAGGAAAGACGCCTTCATC.......................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGCC-CAGTAAGCAGGAAAGACGCCT............................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAGTAAGCAGGAAAGACGCCTTCATC.......................	26	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AACGACCCGTGCC-CAGTAAGCAGGAA....................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TAAACGACCCGTGCC-CAGTAAGCA........................................	24	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TAAACGACCCGTGCC-CAGTAAGCAGGA.....................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTAAACGACCCGTGCC-CAGTAAGC.........................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AAACGACCCGTGCC-CAGTAAGCAGGA.....................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTAAACGACCCGTGCC-CAGTAAG..........................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TAAACGACCCGTGCC-CAGTAAGCAG.......................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AAGACGCCTTCATCGAGAAACCA..............	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GTGCC-CAGTAAGCAGGAA....................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................TGCATTAAACGACCCGTGCC-CAGT.............................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0

dp5

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGGAATGCATTGAGAGAGCCGTGAC-CAGTCAAGAGGAACCCAGAACTAAGGTTTAAACCAAACTCCGGTCGACA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................TCAAGAGGAACCCAGAACTAAGG.......................	23	3	6.00	18	0	2	0	0	0	0	0	7	9	0
...........................................................................................................................................................................................................................................................................................................................................TGAGAGAGCCGTGAC-CAGTCAAGAGG......................................	26	2	3.00	6	0	0	0	0	0	0	0	3	3	0
..............................................................................................................................................................................................................................................................................................................................................................TCAAGAGGAACCCAGAACTAAGGTT.....................	25	3	2.67	8	0	4	0	0	0	0	0	2	2	0
......................................................................................................................................................................................................................................................................................................................................................TGAC-CAGTCAAGAGGAACCCAGAAC............................	25	2	2.00	4	0	1	0	0	0	0	0	0	3	0
...........................................................................................................................................................................................................................................................................................................................................TGAGAGAGCCGTGAC-CAGTCAAGA........................................	24	2	2.00	4	0	0	0	0	0	0	0	0	4	0
..................................................................................................................................................................................................................................................................................................................................................GCCGTGAC-CAGTCAAGAGGAACCCA................................	25	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTCAAGAGGAACCCAGAACTAAGGTTT....................	27	2	1.50	3	0	0	0	0	0	0	0	0	3	0
...........................................................................................................................................................................................................................................................................................................................................TGAGAGAGCCGTGAC-CAGTCAAGAG.......................................	25	2	1.50	3	0	0	0	0	0	0	0	2	1	0
..................................................................................................................................................................................................................................................................................................................................................................GAGGAACCCAGAACTAAGGTTTAAAC................	26	3	1.00	3	0	0	0	0	0	0	0	0	3	0
..................................................................................................................................................................................................................................................................................................................................................GCCGTGAC-CAGTCAAGAGGAACC..................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GAGCCGTGAC-CAGTCAAGAGGAACC..................................	25	2	1.00	2	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAGTCAAGAGGAACCCAGAACTAAG........................	25	2	1.00	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................TCAAGAGGAACCCAGAACTAAGGT......................	24	3	0.67	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................CAAGAGGAACCCAGAACTAAGG.......................	22	3	0.67	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................AGTCAAGAGGAACCCAGAACTAAGGTT.....................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................C-CAGTCAAGAGGAACCCAGAACTAAGG.......................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAGTCAAGAGGAACCCAGAACTAAGG.......................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................CCGTGAC-CAGTCAAGAGGAAC...................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGCAGGAATGCATTGAGAGAGC........................................................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GAGGAACCCAGAACTAAGGTTTAAA.................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CAAGAGGAACCCAGAACTAAGGTT.....................	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CAAGAGGAACCCAGAACTAAG........................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TCAAGAGGAACCCAGAACTAAG........................	22	3	0.33	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CAAGAGGAACCCAGAACTAAGGA......................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAGAGGAACCCAGAACTAAGGTT.....................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AACCCAGAACTAAGGTTTAAACCAAAC...........	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................GAGGAACCCAGAACTAAGGTTTAAACC...............	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0

droPer2

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAGGAATGCATTGAAAGAACCGTGAC-CAGTCAAGAGGAACCCAGAACTAAGGTTTAAACCAAACTCCGGTCGACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATACAGGAATGCATTCAGCGATCCATGGC-CAGTCAGCAAGAATCCACCGTGAAGTCCAAAACCAAAGTCCTTCCGGCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGC.	28	14	53.43	748	0	742	0	6	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGG..	27	14	34.36	481	0	457	0	24	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCG...	26	14	8.86	124	0	95	0	29	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCCGGC.	27	14	5.00	70	0	70	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCC....	25	14	3.21	45	0	44	0	1	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTCAG..........................................	27	9	2.56	23	0	5	0	18	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTCA...........................................	26	9	2.56	23	0	7	0	16	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAG..............................................	23	12	2.25	27	0	9	0	18	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCCGG..	26	14	2.21	31	0	31	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTC............................................	25	9	2.00	18	0	7	0	11	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTC.....	24	14	1.64	23	0	17	0	6	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGT.............................................	24	10	1.50	15	0	2	0	13	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCAAGA.....................................	27	9	1.33	12	0	1	0	11	0
...........................................................................................................................................................................................................................................................................................................................TCATACAGGAATGCATTCAGCGATCCA......................................................	27	9	1.22	11	0	11	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGCT	29	14	1.21	17	0	17	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGGC-CAGTCAGCAAGAATCCACCG.............................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................TCATACAGGAATGCATTCAGCGATCC.......................................................	26	9	1.00	9	0	4	0	5	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCAAG......................................	26	10	0.90	9	0	3	1	5	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCC.......................................................	23	9	0.78	7	0	0	0	7	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACCAAAGTCCTTCCGGC.	23	14	0.71	10	0	10	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCCG...	25	14	0.71	10	0	10	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTCAGC.........................................	28	9	0.67	6	0	6	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCCAT.....................................................	25	9	0.67	6	0	5	0	1	0
...........................................................................................................................................................................................................................................................................................................................TCATACAGGAATGCATTCAGCGATC........................................................	25	9	0.67	6	0	3	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTT......	23	14	0.64	9	0	6	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGA.	28	14	0.64	9	0	8	0	1	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGC.........................................	23	10	0.60	6	0	3	0	3	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CA...............................................	22	12	0.50	6	0	3	0	3	0
...........................................................................................................................................................................................................................................................................................................................TCATACAGGAATGCATTCAGCGATCCAT.....................................................	28	9	0.44	4	0	4	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTCAGCA........................................	29	9	0.44	4	0	4	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGTCCAAAACCAAAGTCCTTCCGGC.	25	14	0.43	6	0	5	0	1	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAG..........................................	22	10	0.40	4	0	0	0	4	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCAA.......................................	25	10	0.40	4	0	2	0	2	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCCATGG...................................................	27	8	0.38	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCC....	24	14	0.36	5	0	5	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAGTCCAAAACCAAAGTCCTTCCGGC.	26	14	0.36	5	0	5	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCCA......................................................	24	9	0.33	3	0	3	0	0	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTCAGCAAGA.....................................	26	9	0.33	3	0	1	0	2	0
.......................................................................................................................................................................................................................................................................................................................................GCATTCAGCGATCCATGGC-CAGTCAG..........................................	26	9	0.33	3	0	2	0	1	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCAAGAA....................................	28	9	0.33	3	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCA........................................	24	10	0.30	3	0	2	0	1	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTC............................................	19	10	0.30	3	0	3	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGTCCAAAACCAAAGTCCTTCCGGCT	26	14	0.29	4	0	3	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCC........	21	14	0.29	4	0	2	1	1	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACCAAAGTCCTTCCGGCT	24	14	0.29	4	0	3	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCT.......	22	14	0.29	4	0	1	2	1	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGTCAGCAAGA.....................................	28	9	0.22	2	0	1	0	1	0
.............................................................................................................................................................................................................................................................................................................................ATACAGGAATGCATTCAGCGATCCAT.....................................................	26	9	0.22	2	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................CATACAGGAATGCATTCAGCGATCC.......................................................	25	9	0.22	2	0	1	0	1	0
.............................................................................................................................................................................................................................................................................................................................ATACAGGAATGCATTCAGCGATCCA......................................................	25	9	0.22	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................CATACAGGAATGCATTCAGCGATCCA......................................................	26	9	0.22	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCCATT....................................................	26	9	0.22	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................CCAAAACCAAAGTCCTTCCGGC.	22	14	0.21	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAGTCCAAAACCAAAGTCCTTCCGG..	25	14	0.21	3	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGCA	29	14	0.21	3	0	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGT..	27	14	0.21	3	0	1	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................GTGAAGTCCAAAACCAAAGTCCTTCCGG..	28	14	0.21	3	0	3	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTT............................................	25	10	0.20	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................CATTCAGCGATCCATGGC-CAGTCAGC.........................................	26	10	0.20	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCCATGGC-CAGTCAGCAAGAATCCA................................	25	10	0.20	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATGCATTCAGCGATCCATGGC-CAG..............................................	24	12	0.17	2	0	1	0	1	0
.......................................................................................................................................................................................................................................................................................................................................GCATTCAGCGATCCATGGC-CAG..............................................	22	12	0.17	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAGTCCAAAACCAAAGTCCTT......	21	14	0.14	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTGAAGTCCAAAACCAAAGTCCTTCC....	26	14	0.14	2	0	1	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAACCAAAGTCCTTCCGGCT	25	14	0.14	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAACCAAAGTCCTTCCGGC.	24	14	0.14	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................AAGTCCAAAACCAAAGTCCTTCCG...	24	14	0.14	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTGAAGTCCAAAACCAAAGTCCT.......	24	14	0.14	2	0	1	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACCAAAGTCCTTCCGG..	22	15	0.13	2	0	1	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCCGGTA	28	15	0.13	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AAAACCAAAGTCCTTCCGG..	19	15	0.13	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGTCCAAAACCAAAGTCCTTCCGG..	24	15	0.13	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCCATG....................................................	26	8	0.13	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATCCATGGC-.................................................	28	8	0.13	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAATGCATTCAGCGATCCATGGC-C................................................	24	8	0.13	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................CATACAGGAATGCATTCAGCGA..........................................................	22	9	0.11	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-CAGTCAGT.........................................	28	9	0.11	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTCAGCAAGAT....................................	27	9	0.11	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGAT.........................................................	21	9	0.11	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................CATACAGGAATGCATTCAGCGATCCATT....................................................	28	9	0.11	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGATC........................................................	22	9	0.11	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCGATCCATGGC-CAGTCAGCAAGAATC..................................	28	9	0.11	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................CATACAGGAATGCATTCAGCGATC........................................................	24	9	0.11	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATACAGGAATGCATTCAGCGATCC.......................................................	24	9	0.11	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................GCATTCAGCGATCCATGGC-CAGTCAGCA........................................	28	9	0.11	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGGAATGCATTCAGCGATC........................................................	19	9	0.11	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................TCATACAGGAATGCATTCAGCGA..........................................................	23	9	0.11	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................CAGGAATGCATTCAGCGATC........................................................	20	9	0.11	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCG...........................................................	19	9	0.11	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................TACAGGAATGCATTCAGCGA..........................................................	20	9	0.11	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................CATACAGGAATGCATTCAGCGATCCAT.....................................................	27	9	0.11	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCATTCAGCGATCCATGGC-CAGTCA...........................................	25	9	0.11	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCAAGT.....................................	27	9	0.11	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATACAGGAATGCATTCAGCGA..........................................................	21	9	0.11	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTCAGCAT.......................................	25	10	0.10	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTCAGCAAT......................................	25	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGTCAGCAA.......................................	26	10	0.10	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTCAGC.........................................	22	10	0.10	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGTCAGCAAG......................................	27	10	0.10	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTCAGCAA.......................................	24	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGTCAGCT........................................	25	10	0.10	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................CATTCAGCGATCCATGGC-CAGTCAGCA........................................	27	10	0.10	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCCATGGC-CAGTCAGCAAGAATCC.................................	24	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGTCAGC.........................................	24	10	0.10	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................TCCATGGC-CAGTCAGCAAGAAT...................................	22	10	0.10	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TCAGCGATCCATGGC-CAGTC............................................	20	10	0.10	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................CAGCGATCCATGGC-CAGTCAG..........................................	21	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGTCAGCA........................................	25	10	0.10	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTCAGCGATCCATGGC-CAGT.............................................	20	11	0.09	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AATGCATTCAGCGATCCATGGC-CAG..............................................	25	12	0.08	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-.................................................	20	12	0.08	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATGCATTCAGCGATCCATGG...................................................	20	12	0.08	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGG...................................................	19	12	0.08	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCATTCAGCGATCCATGGC-C................................................	21	12	0.08	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACCAAAGTCCTTCCGGCA	24	14	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCCGGCA	28	14	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCGA...	25	14	0.07	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACCAAAGTCCTTCCGGC.	18	14	0.07	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTGAAGTCCAAAACCAAAGTCC........	23	14	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTT......	22	14	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTT.....	24	14	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGCC	29	14	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGCG	29	14	0.07	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTGAAGTCCAAAACCAAAGTCCTT......	25	14	0.07	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTGAAGTCCAAAACCAAAGTCCTTCCGGC.	29	14	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCAA..	27	14	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCT.......	21	14	0.07	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AAACCAAAGTCCTTCCGGC.	19	14	0.07	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CCAAAACCAAAGTCCTTC.....	18	15	0.07	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CAAAACCAAAGTCCTTCCGG..	20	15	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGT.	28	15	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCAAAACCAAAGTCCTTCCT...	25	15	0.07	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAACCAAAGTCCTTCCGG..	23	15	0.07	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCAAAACCAAAGTCCTTCCG...	21	15	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGTG.	28	15	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAGTCCTTCCGGTG	29	15	0.07	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CCAAAACCAAAGTCCTTCCGG..	21	15	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGAAGTCCAAAACCAAAG...........	18	16	0.06	1	0	1	0	0	0

droVir3

GAG-GGAGGCTTATTCCTGCCTCTTCCGCAAATGACGGCAATTTCAAGTTGATCACAGATCAAACCGCT---ATGCGGCCAGCTAGTGTCCCCAACAAGTCCCAAAAGACT-ATGGCGGAGGGAGCAGATAGCCG--------AGACCGCCTCTAT-GTTCCCTAACGCCAGACCAGTCAGACAAAACACACTCTTTCACCAATCTCTT---------------------GCATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------ATCCCTACCCGCTAGCCAATCATTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------A........................	27	1	8.00	8	0	0	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCTCC...........................................................................................................................................	24	3	3.33	10	3	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCTCCA..........................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCATTCACTA--AGACCTAAACTCTCCA..........................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------.........................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CACAGATCAAACCGCT---ATGCGGCC............................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GTCAGACAAAACACACTCTTTC......................................................................................................................................................................................................	22	20	1.35	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TTTCAAGTTGATCACAGATCAAACCGC........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------A........................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------ATCCC....................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------A........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCTCCAC----------------------------------------------------------------------------------------------------------------AT.......................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TTTCAAGTTGATCACAGATCAAACC..........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCTC............................................................................................................................................	23	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACTCT.............................................................................................................................................	22	3	0.67	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CATTCACTA--AGACCTAAACT...............................................................................................................................................	20	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GTCAGACAAAACACACTCTTTCACCAAT................................................................................................................................................................................................	28	20	0.35	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATTCACTA--AGACCTAAACTCTC............................................................................................................................................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CTCTT---------------------GCATTCACTA--AGACCTAAACTC..............................................................................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GTCCCAAAAGACT-ATGGCGGAGG..................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCATTCACTA--AGACCTAAACTCTC............................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATTCACTA--AGACCTAAACTCTCC...........................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ACCAATCTCTT---------------------GCATTCACTA--AGAC......................................................................................................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCATTCACTA--AGACCTAAACTCTTT...........................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TAGTGTCCCCAACAAGTCCCAAAAGAC..............................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATTCACTA--AGACCTAAACTCTA............................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GTCAGACAAAACACACTCTTT.......................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AGTCAGACAAAACACACTCTTTG......................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GTCAGACAAAACACACTCTTTCATGT..................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAAGAATGCATTGAGGGAACCGTGAC-CAGTCAACAGGAATCCAAGACTCAGGCCGAACCCAAAGTCTGGTCGGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................TCAACAGGAATCCAAGACTCAGGCC.....................	25	3	0.33	1	1	0	0	0	0	0

droGri2

GAG-CGAGGCCTATTCCTTCCTCTTCCGCAAACACCGGCATTCATA-ACTGAACGAA-----------TTCAGACCGGCGAGCTGATATCCCCAACAAC---------------AGCGCTGAGAGCCGAGGGTCG--------AGACCGCCCCTGA-ACACCCCA------AACGCGTTATCCCAAGCACACTTA------GATCTCTCAGATCTGCAT----ACAAAGGGCACTCACAG--AGAACA--TGTTCCCATGTCTCTCCCACCCAGCCACAAGGGCATTCCGGGCTATCACAAA-----GTCGTCTTGAATGCAAGAATGCGTTCAGAGACCCGTGGC-CCGTCAACAAAAATCCAAAACTCAGGTGAAGCCTGAAGTCTGGACGGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................................T----ACAAAGGGCACTCACAG--AGAACA--TGT...............................................................................................................................................	27	16	0.50	8	0	8
..........................................................................................................................................................................................................................T----ACAAAGGGCACTCACAG--AGAACA--TG................................................................................................................................................	26	16	0.19	3	0	3
..............................................................................................................................................................................................................................................................................................................................TGCAAGAATGCGTTCAGAGACCCGT.....................................................	25	16	0.13	2	1	1
......................................................................................................................................................................................................................TGCAT----ACAAAGGGCACTCACAG--A.........................................................................................................................................................	23	20	0.10	2	0	2
....................................................................................................................................TCG--------AGACCGCCCCTGA-ACACCCCA------AA...............................................................................................................................................................................................................................	26	20	0.10	2	2	0
.....................................................................................................................................................................................................................................................................................................TATCACAAA-----GTCGTCTTGAATGCAAGAA......................................................................	28	20	0.10	2	0	2
...................................................................................TGATATCCCCAACAAC---------------AGCGCTGA..................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2
....................................................................................................................................................................................................................................................................................................................TCGTCTTGAATGCAAGAATGCGTT................................................................	24	20	0.10	2	0	2
...........................................................................................................................................................................................................................................................................................................................................................CCGTCAACAAAAATCCAAAACTCAGG.......................	26	20	0.10	2	2	0
......................................................................................................................................................................................................................TGCAT----ACAAAGGGCACTCACAG--AGAACA--..................................................................................................................................................	28	16	0.06	1	0	1
.............................................................................................................................................................................................................................................................................................................................ATGCAAGAATGCGTTCAGAGACCCGTG....................................................	27	16	0.06	1	0	1
..............................................................................................................................................................................................................................................................................................................................TGCAAGAATGCGTTCAGAGACCCG......................................................	24	16	0.06	1	0	1
..........................................................................................................................................................................................................................T----ACAAAGGGCACTCACAG--AGAACA--..................................................................................................................................................	24	16	0.06	1	0	1
..............................................................................................................................................................................................................................................................................................................................TGCAAGAATGCGTTCAGAGACCCCCC....................................................	26	16	0.06	1	0	1
..........................................................................................................................................................................................................................T----ACAAAGGGCACTCACAG--AGAAC.....................................................................................................................................................	23	16	0.06	1	1	0
..................................................................................................................................................................................................................................AAGGGCACTCACAG--AGAACA--..................................................................................................................................................	20	17	0.06	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGCCTGAAGTCTGGACGGT.	24	20	0.05	1	0	1
.................................................................................GCTGATATCCCCAACAAC---------------AGCGCTG...................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0
.......................................................................................................................................................................................................................................................................CTCCCACCCAGCCACAAGGGC................................................................................................................	21	20	0.05	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAGCCTGAAGTCTGGACGG..	21	20	0.05	1	1	0
........................................................................................................................................................................................................................................................................TCCCACCCAGCCACAAGGGCATTCCG..........................................................................................................	26	20	0.05	1	1	0
........................................................................................TCCCCAACAAC---------------AGCGCTGAGAGCCGAGG.........................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1
.......................................ATTCATA-ACTGAACGAA-----------TTCAGACC................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0
...........................................................................................................................................................................................................TCTCTCAGATCTGCAT----ACAAAGGGC....................................................................................................................................................................	25	20	0.05	1	0	1
............................................................................................................................................................................................................................................................TTCCCATGTCTCTCCCACCCAGCCACA.....................................................................................................................	27	20	0.05	1	1	0
.............TTCCTTCCTCTTCCGCAAACACCGGC.....................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0
.................TTCCTCTTCCGCAAACACCGGCATTCA................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0
.............................................................................................................................................................................................................................................................................................TTCCGGGCTATCACAAA-----GTCGTCTTGA...............................................................................	27	20	0.05	1	0	1
......................................................................................................................................................................................................................TGCAT----ACAAAGGGCACTCACAG--AG........................................................................................................................................................	24	20	0.05	1	0	1
...................................................................................TGATATCCCCAACAAC---------------AGCGCTGAGA................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0
..........................................................................................CCCAACAAC---------------AGCGCTGAGAGCCGAGG.........................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0
...........TATTCCTTCCTCTTCCGCAAACACC........................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0
..................................................................................................................................................................................TATCCCAAGCACACTTA------GATCTCTCA..........................................................................................................................................................................................	26	20	0.05	1	0	1
.....................................................................................................................................................................................................................................................................................CAAGGGCATTCCGGGCTATCACAAA-----G........................................................................................	26	20	0.05	1	1	0

dan_1627

scaffold_13250:3448322-3448472 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.2	-20.3	-20.2