ID:

dan_1618

 Coordinate:

scaffold_13250:1734125-1734275 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.8 -32.8 -32.7

Flybase annnotation

CDS [Dana\GF12325-cds]; exon [dana_GLEANR_1233:1]; intron [Dana\GF12325-in]

No Repeatable elements found

mature
  1. scaffold_109:554-580 +
  2. scaffold_7787:902-928 -
  3. scaffold_7845:2888-2914 +
  4. scaffold_8713:49035-49061 -
  5. scaffold_9757:3992-4018 +
  6. scaffold_9757:5486-5512 +
  7. scaffold_12947:355807-355833 +
  8. scaffold_13082:484876-484902 +
  9. scaffold_13082:698358-698384 +
  10. scaffold_13082:1690646-1690672 +
  11. scaffold_13110:81507-81533 -
  12. scaffold_13140:27034-27060 +
  13. scaffold_13250:408747-408773 +
  14. scaffold_13250:724894-724920 +
  15. dan_1618  scaffold_13250:1734161-1734187 +
  16. scaffold_13250:2591096-2591122 +
  17. scaffold_13250:2599188-2599214 +
  18. scaffold_13260:824843-824869 -
  19. scaffold_13280:735926-735952 +
  20. scaffold_13335:2833773-2833799 +
  21. scaffold_13045:83951-83977 -
  22. scaffold_13230:1448009-1448035 -
  23. scaffold_13339:2158924-2158950 -
  24. scaffold_13499:665986-666012 -
  25. scaffold_5650:4612-4638 -
  26. scaffold_9643:955-981 -
  27. scaffold_12943:2051217-2051243 -
  28. scaffold_12947:123514-123540 -
  29. scaffold_13010:126003-126029 -
  30. scaffold_13045:538049-538075 -
  31. scaffold_13082:595311-595337 -
  32. scaffold_13082:2561999-2562025 -
  33. scaffold_13165:88787-88813 -
  34. scaffold_13230:2345725-2345751 -
  35. scaffold_13230:3120413-3120439 -
  36. scaffold_13235:12132-12158 -
  37. scaffold_13250:1235990-1236016 -
  38. scaffold_13339:592239-592265 -
  39. scaffold_13339:1688918-1688944 -
  40. scaffold_13339:4474408-4474434 -
star
  1. scaffold_3897:5128-5149 +
  2. scaffold_7845:2975-2996 +
  3. scaffold_9619:7144-7165 +
  4. scaffold_10452:7009-7030 +
  5. scaffold_12023:377-398 +
  6. scaffold_13082:1690737-1690758 +
  7. scaffold_13140:27125-27146 +
  8. scaffold_13176:6221-6242 +
  9. scaffold_13230:2915468-2915489 +
  10. scaffold_13230:3420325-3420346 +
  11. scaffold_13239:386133-386154 +
  12. scaffold_13250:408838-408859 +
  13. scaffold_13250:724985-725006 +
  14. dan_1618  scaffold_13250:1734252-1734273 +
  15. scaffold_13250:2591187-2591208 +
  16. scaffold_13250:2599279-2599300 +
  17. scaffold_13280:736017-736038 +
  18. scaffold_13335:2833864-2833885 +
  19. scaffold_13417:2973527-2973548 +
  20. scaffold_13469:593469-593490 +
  21. scaffold_300:381-402 +
  22. scaffold_3802:4649-4670 +
  23. scaffold_12944:203953-203974 +
  24. scaffold_12947:355898-355919 +
  25. scaffold_1708:772-793 -
  26. scaffold_8713:48949-48970 -
  27. scaffold_12943:2051131-2051152 -
  28. scaffold_12947:123422-123443 -
  29. scaffold_13010:125917-125938 -
  30. scaffold_13045:82881-82902 -
  31. scaffold_13045:537963-537984 -
  32. scaffold_13082:595225-595246 -
  33. scaffold_13082:820220-820241 -
  34. scaffold_13099:535419-535440 -
  35. scaffold_13112:35592-35613 -
  36. scaffold_13230:3120327-3120348 -
  37. scaffold_13235:12046-12067 -
  38. scaffold_13250:1235904-1235925 -
  39. scaffold_13260:824757-824778 -
  40. scaffold_13272:205326-205347 -
  41. scaffold_13339:592153-592174 -
  42. scaffold_13339:4474322-4474343 -
  43. scaffold_13467:44563-44584 -
  44. scaffold_13744:26684-26705 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCATAATGAGGTCAAGGCTGCAGTGCAGAAGGGAGATTTGACCATCATGGTACTGGAGCCGTTGGAAATTGCGTTGCGGAAGAAATTCACCACACTCCAGGATGAGTTAGAGCGATTGAGCTCTAGCGAAATTGGGAGCGAATTATTCTGAAAGTTCTCCCAGCTTGCCGCTAAAGTGCGCGTTGATATTCAGGTGGGAATGGCAAGGTACTCCATGAGGGTGCCTAAACACTCCACTCGTCTCGACGGC
**************************************************************************************....((((((((......))))((((((......))))))((((..((((((..(((((........))))))))))).))))(((......)))..((((...)))))))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
.......TGAGGTCAAGGCTGCAGTGC................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
.......TGAGGTCAAGGCTGCAGTGCAGA............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
......................................................................................TTCACCACACTCCAGGATGAGTTAGAG.......................................................................................................................................... 27 0 20 0.65 13 9 4 0 0 0 0
...........................................................CCGTTGGAAATTGCGTTGCGGAAGA....................................................................................................................................................................... 25 0 20 0.60 12 3 9 0 0 0 0
......................................................................................TTCACCACACTCCAGGATGAGTTAGAGC......................................................................................................................................... 28 0 20 0.50 10 10 0 0 0 0 0
...................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAAT................................................. 23 0 20 0.50 10 10 0 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTAC....................................... 25 0 20 0.45 9 5 4 0 0 0 0
......................................................................................TTCACCACACTCCAGGATGAGTTAG............................................................................................................................................ 25 0 20 0.40 8 5 1 0 2 0 0
...............................................................................................................................................................................................................................GCCTAAACACTCCACTCGTCTCGACGGC 28 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TAAACACTCCACTCGTCTCGACGGC 25 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................TTATTCTGAAAGTTCTCCCGGCTTGCCGC............................................................................... 29 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGGC.............................................. 22 0 20 0.30 6 1 0 5 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCA............................................. 23 0 20 0.30 6 5 1 0 0 0 0
................................................................................................TCCAGGATGAGTTAGAGCGATTGAGCTC............................................................................................................................... 28 0 20 0.30 6 6 0 0 0 0 0
.............................................................................................CACTCCAGGATGAGTTAGAGCGATTG.................................................................................................................................... 26 0 20 0.30 6 6 0 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGG.......................................... 22 0 20 0.25 5 0 3 2 0 0 0
........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCAAGG.......................................... 25 0 20 0.25 5 4 1 0 0 0 0
................................................................................................TCCAGGATGAGTTAGAGCGATTG.................................................................................................................................... 23 0 20 0.25 5 5 0 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAAGG.......................................... 26 0 20 0.25 5 0 4 1 0 0 0
...................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAATGGC.............................................. 26 0 20 0.25 5 5 0 0 0 0 0
.........................................................................................................................................................................................................TGGCAAGGTACTCCATGAGGGTGC.......................... 24 0 20 0.20 4 0 4 0 0 0 0
................................GGAGATTTGACCATCATGGTACTGGA................................................................................................................................................................................................. 26 0 20 0.20 4 4 0 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTA........................................ 24 0 20 0.20 4 3 0 1 0 0 0
................................................................................................TCCAGGATGAGTTAGAGCGATT..................................................................................................................................... 22 0 20 0.20 4 4 0 0 0 0 0
...................TGCAGTGCAGAAGGGAGATTTGACC............................................................................................................................................................................................................... 25 0 20 0.20 4 0 4 0 0 0 0
.........................................................................................................................................................................................GATATTCAGGTGGGAATGGCAAGGTAC....................................... 27 0 20 0.20 4 4 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGG.................................................... 22 0 20 0.20 4 2 2 0 0 0 0
........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCA............................................. 22 0 20 0.20 4 3 1 0 0 0 0
.................................................................................................CCAGGATGAGTTAGAGCGATTGAG.................................................................................................................................. 24 0 20 0.20 4 4 0 0 0 0 0
...................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAATGG............................................... 25 0 20 0.20 4 4 0 0 0 0 0
................................GGAGATTTGACCATCATGGTAC..................................................................................................................................................................................................... 22 0 20 0.20 4 0 4 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAG........................................... 21 0 20 0.20 4 4 0 0 0 0 0
..........................................................................................................................TCTAGCGAAATTGGGAGCGAATTATT....................................................................................................... 26 0 13 0.15 2 1 1 0 0 0 0
............TCAAGGCTGCAGTGCAGAAGGGAG....................................................................................................................................................................................................................... 24 0 20 0.15 3 0 3 0 0 0 0
.......................................................................................TCACCACACTCCAGGATGAGTTAGAGC......................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................................................................GATATTCAGGTGGGAATGGCAAGGTA........................................ 26 0 20 0.15 3 3 0 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACT...................................... 26 0 20 0.15 3 0 3 0 0 0 0
................................GTAGATTTGACCATCATGGTACTGGA................................................................................................................................................................................................. 26 1 20 0.15 3 0 3 0 0 0 0
...................................................TACTGGAGCCGTTGGAAATTGCGTT............................................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
...........................................................CCGTTGGAAATTGCGTTGCGGAAGAA...................................................................................................................................................................... 26 0 20 0.15 3 2 1 0 0 0 0
...........................................CATCATGGTACTGGAGCCGTTG.......................................................................................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................................................................GATATTCAGGTGGGAATGGCAAGG.......................................... 24 0 20 0.15 3 2 1 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGG............................................... 21 0 20 0.15 3 3 0 0 0 0 0
...........................AGAAGGGAGATTTGACCATCATGG........................................................................................................................................................................................................ 24 0 20 0.15 3 2 1 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGT......................................... 23 0 20 0.15 3 2 0 0 1 0 0
......................................................................................TTCACCACACTCCAGGATGAG................................................................................................................................................ 21 0 20 0.10 2 0 2 0 0 0 0
........................................................................................CACCACACTCCAGGATGAGTTAGA........................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................................................GCGTTGATATTCAGGTGGGAATGG............................................... 24 0 20 0.10 2 1 1 0 0 0 0
..............................AGGGAGATTTGACCATCATGGTAC..................................................................................................................................................................................................... 24 0 20 0.10 2 0 1 1 0 0 0
......................................................................TGCGTTGCGGAAGAAATTC.................................................................................................................................................................. 19 0 20 0.10 2 0 2 0 0 0 0
........................................................................................CACCACACTCCAGGATGAGTTAGAGCGA....................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
...........................................................CCGTTGGAAATTGCGTTGCGGA.......................................................................................................................................................................... 22 0 20 0.10 2 1 0 0 1 0 0
........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCAAG........................................... 24 0 20 0.10 2 1 0 1 0 0 0
...................TGCAGTGCAGAAGGGAGATTTGACCA.............................................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
.........................GCAGAAGGGAGATTTGACCATC............................................................................................................................................................................................................ 22 0 20 0.10 2 1 1 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAATGGC.............................................. 28 0 20 0.10 2 2 0 0 0 0 0
.......................................................GGAGCCGTTGGAAATTGCGTTGC............................................................................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0 0
...........................................................CCGTTGGAAATTGCGTTGCGGAA......................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAAG........................................... 25 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTC..................................... 25 0 20 0.10 2 2 0 0 0 0 0
........................................GACCATCATGGTACTGGAGCCGT............................................................................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0 0
.......................................................................................TCACCACACTCCAGGATGAGTTAGAG.......................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
................................GGAGATTTGACCATCATGGTACTGGAG................................................................................................................................................................................................ 27 0 20 0.10 2 0 2 0 0 0 0
..........................................................GCCGTTGGAAATTGCGTTGCGG........................................................................................................................................................................... 22 0 20 0.10 2 1 0 1 0 0 0
...........GGCAAGGCTGCAGTGCAGAAGGGAGAT..................................................................................................................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0 0
................................................................................................TCCAGGATGAGTTAGAGC......................................................................................................................................... 18 0 20 0.10 2 0 0 0 0 2 0
....................................................................................................................................................................................................................................AACACTCCACTCGTCTCGACGG. 22 0 20 0.10 2 2 0 0 0 0 0
................................................................................................TCCAGGATGAGTTAGAGCGATTGAGCT................................................................................................................................ 27 0 20 0.10 2 0 1 0 1 0 0
...........................AGAAGGGAGATTTGACCATCATGGTAC..................................................................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACT...................................... 24 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAA.................................................. 24 0 20 0.10 2 0 2 0 0 0 0
......................................................................................TGCACCACACTCCAGGATGAGTTAGAGC......................................................................................................................................... 28 1 20 0.10 2 0 2 0 0 0 0
....................................................................................................................TTGAGCTCTAGCGAAATTTGGAG................................................................................................................ 23 1 13 0.08 1 0 0 1 0 0 0
....................................................................................................................TTGAGCTCTAGCGAAATTGGGA................................................................................................................. 22 0 13 0.08 1 0 1 0 0 0 0
.....................................................................................................................TGAGCTCTAGCGAAATTGGGA................................................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0
..........................................................................................................................TCTAGCGAAATTGGGAGCGA............................................................................................................. 20 0 13 0.08 1 1 0 0 0 0 0
....................................................................................................................TTGAGCTCTAGCGAAATTGGGAGC............................................................................................................... 24 0 13 0.08 1 0 0 1 0 0 0
............................................................................................................................TAGCGAAATTGGGAGCGAATTATTGT..................................................................................................... 26 1 13 0.08 1 0 0 1 0 0 0
.....................................................................................................................TGAGCTCTAGCGAAATTGGGAGC............................................................................................................... 23 0 13 0.08 1 0 1 0 0 0 0
..........................................................................................................................TCTAGCGAAATTGGGAGCGAATTATTC...................................................................................................... 27 0 13 0.08 1 1 0 0 0 0 0
..........................................................................................................................TGTAGCGAAATTGGGAGCGAATTATTC...................................................................................................... 27 1 13 0.08 1 0 1 0 0 0 0
..................................................................................................................GATTGAGCTCTAGCGAAATTGGGAG................................................................................................................ 25 0 13 0.08 1 1 0 0 0 0 0
............................................................................................................................TAGCGAAATTGGGAGCGAATTATTCTG.................................................................................................... 27 0 13 0.08 1 1 0 0 0 0 0
................................................................................................................GCGATTGAGCTCTAGCGAAATTG.................................................................................................................... 23 0 14 0.07 1 0 1 0 0 0 0
..................................................................................................................GATTGAGCTCTAGCGAAATTG.................................................................................................................... 21 0 14 0.07 1 0 0 0 1 0 0
...............................................................................GAAGAAATTCACCACACTCCAGGATG.................................................................................................................................................. 26 0 18 0.06 1 1 0 0 0 0 0
..........................................................GCCGTTGGAAATTGCGTTGCGGAAGA....................................................................................................................................................................... 26 0 18 0.06 1 1 0 0 0 0 0
..........................................................GCCGTTGGAAATTGCGTTGCGGA.......................................................................................................................................................................... 23 0 19 0.05 1 1 0 0 0 0 0
..........................................................GCCGTTGGAAATTGCGTTGCGGAA......................................................................................................................................................................... 24 0 19 0.05 1 0 1 0 0 0 0
....................GCAGTGCAGAAGGGAGATTTGACC............................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
.......................................................GGAGCCGTTGGAAATTGCGTTGCGG........................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAAGGTA........................................ 28 0 20 0.05 1 0 1 0 0 0 0
............................................................................................CCACTCCAGGATGAGTTAGAGCGA....................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..............................AGGGAGATTTGACCATCATGGTACTGGA................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................ACTCCAGGATGAGTTAGAGCGATTGA................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................TTCGCGTTGATATTCAGGTGGGA................................................... 23 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................ACTCCAGGCTGAGTTAGAGCGATTGAGC................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
................................GGAGATTTGACCATCATGGTACT.................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
..........................................................................TTGCGGAAGAAATTCACCACACTCCAG...................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................CACTCCACTCGTCTCGACGGC 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CTCGTTGATATTCAGGTGGGAATG................................................ 24 1 20 0.05 1 0 1 0 0 0 0
..................................................................AAATTGCGTTGCGGAAGAAATTCAC................................................................................................................................................................ 25 0 20 0.05 1 0 0 1 0 0 0
...........................................................CCGTTGGAAATTGCGTTGCGG........................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................CACTCCAGTATGAGTTAGAGCGATT..................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
...................................................TACTGGAGCCGTTGGAAATTGCGTTG.............................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
...........................AGAAGGGAGATTTGACCATCATGGTACT.................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
......................................................................................TTCACCACACTCCAGGATGAGTTA............................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
............................GAAGGGAGATTTGACCATCATGGTAC..................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...........................TGATGGGAGATTTGACCATCATGGT....................................................................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................................................TGGCAAGGTACTCCATGAGGGTG........................... 23 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................GTTGATATTCAGGTGGGACTG................................................ 21 1 20 0.05 1 0 0 0 1 0 0
....................................................................................................................................................................................GCGTTGATATTCAGGTGGGAATG................................................ 23 0 20 0.05 1 1 0 0 0 0 0
................................................................................AAGAAATTCACCACACTCCAGGAC................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
......................................................TGGAGCCGTTGGAAATTGCGTTGC............................................................................................................................................................................. 24 0 20 0.05 1 0 0 1 0 0 0
..............................................................TTGGAAATTGCGTTGCGGAAGAAATT................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................................TGCAGGTGGGAATGGCAAGGTACTCC.................................... 26 1 20 0.05 1 0 1 0 0 0 0
......................................TTGACCATCATGGTACTGGAGC............................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................ATATTCAGGTGGGAATGGCAAGGTA........................................ 25 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ACACTCCACTCGTCTCGACGG. 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................................TCCAGGATGAGTTAGAGCGATTGA................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0
........................................................................................CACCACACTCCAGGATGAGTTAGAGC......................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGG.......................................... 20 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................GTGCGCGTTGATATTCAGGTGGGA................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................TCAGGTGGGAATGGCAAGG.......................................... 19 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................GAATGGCAAGGTACTCCATGAGGGT............................ 25 0 20 0.05 1 0 1 0 0 0 0
...................................................................................AAATTCACCACACTCCAGGAT................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
...........GTCAAGGCTGCAGTGCAGAAGGGAC....................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................GGTCTCCCAGCTTGCCGC............................................................................... 18 1 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTAGGAATGGCAAGG.......................................... 26 1 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCAAGGT......................................... 26 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAAA................................................. 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................TTGCAAATTGCGTTGCTGAAGAAATT................................................................................................................................................................... 26 2 20 0.05 1 0 0 1 0 0 0
...............................................................................................CTCCAGGATGAGTTAGAGCGA....................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................TTAGCGTTGATATTCAGGTGGGAATGGC.............................................. 28 2 20 0.05 1 0 1 0 0 0 0
....................................................................................AATTCACCACACTCCAGGATGAGTTAG............................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
...................................................TACTGGAGCCGTTGGAAATTGCGT................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
............................GAAGGGAGATTTGACCATCATGGT....................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
........................................................................................CACCACACTCCAGGATGAGTTAGAG.......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
................................GGAGATTTGACCATCATGGTACTGC.................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
..............AAGGCTGCAGTGCAGAAGGGAGA...................................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................................GGCAAGGTACTCCATGAGGGTGCC......................... 24 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................ATTCAGGTGGGAATGGCAAGGTACTCC.................................... 27 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................TCACCACACTCCAGGATGAGTTAG............................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
...................TGCAGTGCAGAAGGGAGATTTGACCATCA........................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGT......................................... 21 0 20 0.05 1 1 0 0 0 0 0
...........................................................CCGTTGGAAATTGCGTTGCGGAAG........................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
........................TGGAGAAGGGAGATTTGACCATCATG......................................................................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................................................GCGCGTTGATATTCAGGTG...................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CGCGTTGATATTCAGGTGGGA................................................... 21 0 20 0.05 1 0 0 1 0 0 0
.....................................................................TTCCGTTGCGGAAGAAATTCACCACACC.......................................................................................................................................................... 28 2 20 0.05 1 0 1 0 0 0 0
.............................AAGGGAGATTTGACCATCATGGTACTGG.................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
...................TGCAGTGCAGAAGGGAGATTTGAC................................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
................................GGAGATTTGACCATCATGGTACTGG.................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................TGGATATTCAGGTGGGAATGGC.............................................. 22 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................ATATTCAGGTGGGAATGGCAAGGT......................................... 24 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................AACACTCCACTCGTCTCGACGGC 23 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................TTCGCGTTGATATTCAGGTGGGAAC................................................. 25 2 20 0.05 1 0 1 0 0 0 0
......................................TTGACCATCATGGTACTGGAGCCGTTG.......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
....................GCAGTGCAGAAGGGAGATTTGAC................................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0
...................................................................AATTGCGTTGCGGAAGAAATTCACCA.............................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................CGGAAGAAATTAACCACACTCCAGG..................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACTC..................................... 27 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................ATTCACCACACTCCAGGATGA................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................TTGATATTGAGGTGGGAATGGCA............................................. 23 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................AATGGCAAGGTACTCCATGAGGGTG........................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAATGG............................................... 27 0 20 0.05 1 0 1 0 0 0 0
..........................CAGAAGGGAGATTTGACCATCATGGTAC..................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................ATATTCAGGTGGGAATGGCAAG........................................... 22 0 20 0.05 1 1 0 0 0 0 0
..............................................................................AGAAGAAACTCACCACACCC......................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................................ATTCAGGTGGGAATGGCAAGGTA........................................ 23 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CGCGTTGAGATTCAGGTGGGAATG................................................ 24 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CTCGTTGATATTCAGGTGGGAA.................................................. 22 1 20 0.05 1 0 1 0 0 0 0
..................................................................................GAAATTCACCACACTCCAGGAT................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................................TGTCAGGTGGGAATGGCAAGGTAC....................................... 24 2 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTCTAA.................................. 28 2 20 0.05 1 1 0 0 0 0 0
...............................CGGAGATTTGACCATCATGGTACTGGA................................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
......................................................................................TTAACCACACTCCAGGATGAGTTAGAGC......................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACTCC.................................... 28 0 20 0.05 1 0 1 0 0 0 0
......................................................................................TTCACCACACTCCAGGATGAGTTAGAGT......................................................................................................................................... 28 1 20 0.05 1 0 0 0 1 0 0
........................................................................................................................................................................................TGATATTCGGGTGGGAATGGCAAG........................................... 24 1 20 0.05 1 1 0 0 0 0 0
............................GAAGGGAGATTTGACCATCATGGTACTG................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
......................................................TGCAGCCGTTGGAAATTGCGTTGC............................................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................GAGTTAGAGCGATTGAGCTC............................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................TCAGGTGGGAATGGCAAGGTAC....................................... 22 0 20 0.05 1 1 0 0 0 0 0
..........GGTCAAGGGTGCAGTGCAGAAGGG......................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................TATTCAGGAGGGAATGGCAAGGTAC....................................... 25 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTCCA................................... 27 0 20 0.05 1 1 0 0 0 0 0
......................................................................................TTCACCACGCTCCAGGATGAGTTAG............................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0
......................AGTGCAGAAGGGAGATTTGACCATC............................................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................................................TGGCAAGGTACTCCATGAGGGC............................ 22 1 20 0.05 1 0 1 0 0 0 0
................................GGAGATTTGACCATCATGGCACTGG.................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................TTTTCAGGTGGGAATGGCAAGG.......................................... 22 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................CATTCAGGTGGGAATGGCAAGGTACTC..................................... 27 1 20 0.05 1 0 1 0 0 0 0
............................................................CGTTGGAAATTGCGTTGCGGAAGA....................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
....................................ATTTGACCATCATGGTACTGGAGCCG............................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
......................................................................................TTCACCACACTCCAGGATGGGTTAG............................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0
................................................................................................TCCAGGATGAGTTAGTGCGATTGAGCT................................................................................................................................ 27 1 20 0.05 1 0 0 0 1 0 0
...........................................................................................CACACTCCAGGATGAGTTAGAGCGAT...................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...............................GGGTGATTTGACCATCATGGTACTGGA................................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................ATGAGTTAGAGCGATTGAGCT................................................................................................................................ 21 0 20 0.05 1 0 0 0 1 0 0
..............................................................TTGGAAATTGCGTTGCGGAAGAAA..................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAA............................................ 24 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACC...................................... 26 1 20 0.05 1 0 1 0 0 0 0
................GGCTGCAGTGCAGAAGGGAGATTTG.................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................ATTCAGGTGGGAATGGCAAGGT......................................... 22 0 20 0.05 1 1 0 0 0 0 0
................................TGAGATTTGACCATCATGGTACTGG.................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................TATTCAGGTGGGAATGGCCAGG.......................................... 22 1 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................................................................................................TGGCAAGGTACCCCATGAGGGTGCCT........................ 26 1 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAATG................................................ 24 0 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................................................................................................TTGCAAGGTACTCCATGAGGGTGCC......................... 25 1 20 0.05 1 0 1 0 0 0 0
.................................GAGATTTGACCATCATGGTA...................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAATG................................................ 26 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................GTTGATATTCAGGTGGGAATGG............................................... 22 0 20 0.05 1 0 0 1 0 0 0
.......................................TGACCATCATGGTACTGGAGCCGT............................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
............TGAAGGCTGCAGTGCAGAAGGGAGA...................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.....................................................................TTGCGTTGCGGAAGAAATTCACCACA............................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAA.................................................. 18 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................CACTCCAGGATGAGTTAGAGCGAT...................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
...................TGCAGTGCAGAAGGGAGATTTGA................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 1 0 0 0
......................................................................................................ATGAGTTGGAGCGATTGG................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1
.............................AAGGGAGATTTGACCATCATGGTACTG................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.....................................................................TTGCGTTGCGGAAGAAATTCACCA.............................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................GCGTTGATGTTCAGGTGGGAATGG............................................... 24 1 20 0.05 1 1 0 0 0 0 0
........................................................................................CACCACACTCCAGGATGAGTTA............................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................TGCGCGTTGATATTCAGG........................................................ 18 0 20 0.05 1 0 1 0 0 0 0
......................................TTGACCATGATGGTACTGGAGCCGTTG.......................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................TTGATATTCAGGTGGGAATTGCAACG.......................................... 26 2 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTCCAT.................................. 28 0 20 0.05 1 1 0 0 0 0 0
.........................................ACCGTCATGGTACTGGAGCCG............................................................................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0
.......................................TGACCATCATGGTACTGGAGCCGTTG.......................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
.................................GAGATTTGACCATCATGGTACTGGAG................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................CAGGTGGGAATGGCAAGGTACTCC.................................... 24 0 20 0.05 1 0 1 0 0 0 0
...............................................................................GAAGAAATTCACCACACTCCAGG..................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ACGTATTACTCCAGTTCCGACGTCACGTCTTCCCTCTAAACTGGTAGTACCATGACCTCGGCAACCTTTAACGCAACGCCTTCTTTAAGTGGTGTGAGGTCCTACTCAATCTCGCTAACTCGAGATCGCTTTAACCCTCGCTTAATAAGACTTTCAAGAGGGTCGAACGGCGATTTCACGCGCAACTATAAGTCCACCCTTACCGTTCCATGAGGTACTCCCACGGATTTGTGAGGTGAGCAGAGCTGCCG
****************************************************....((((((((......))))((((((......))))))((((..((((((..(((((........))))))))))).))))(((......)))..((((...)))))))).************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V039
embryo
..............................................................................................................................CGCTTTAACCCTCGCTTAATAAGACTT.................................................................................................. 27 0 1 3.00 3 3 0 0 0
.CGTATTACTCCAGTTCCGACGTCACGT............................................................................................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0
...........................................................................................................................................................................................................................CCCACGGATTTGTGAGGTGAGCAGAG...... 26 0 4 1.25 5 0 5 0 0
............................................................................................................................................................................................................................CCACGGATTTGTGAGGTGAGCAGAG...... 25 0 4 1.00 4 0 4 0 0
......................................................................................................................................................................ACGGCGATTTCACGCGCAACTATAAGTC......................................................... 28 0 1 1.00 1 1 0 0 0
................................................................................................................................................................GGTCGAACGGCGATTTCACGCGCAACT................................................................ 27 0 1 1.00 1 1 0 0 0
................................................................................................................................CTTTAACCCTCGCTTAGTAAGACTT.................................................................................................. 25 1 1 1.00 1 0 1 0 0
........................................................................................................................................................................GGCGATTTCACGCCCAACTATA............................................................. 22 1 1 1.00 1 1 0 0 0
..........................................................................................................................................CGCTTAATAAGACTTTCAAGAGGGT........................................................................................ 25 0 1 1.00 1 0 1 0 0
..............................................................................................................................................................................................................................ACGGATTTGTGAGGTGAGCAGAGCT.... 25 0 3 1.00 3 2 1 0 0
........CTCCAGTTCCGACGTCACGTCTTCCCT........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
........................................................................................................................CGAGATCGCTTTAACCCTCGCTTAAT......................................................................................................... 26 0 13 0.85 11 3 7 1 0
..........CCAGTTCCGACGTCACGTCTTCCCTCT...................................................................................................................................................................................................................... 27 0 20 0.80 16 0 16 0 0
....................................................................................................................................................................................................CCCTTACCGTTCCATGAGGTACTCCC............................. 26 0 20 0.70 14 14 0 0 0
.........................................................................................................................................................................................................................CTCCCACGGATTTGTGAGGTGAGCAGAG...... 28 0 4 0.50 2 1 1 0 0
...............................................................................................................................................................................................................................CGGATTTGTGAGGTGAGCAGAG...... 22 0 4 0.50 2 1 1 0 0
.............................................AGTACCATGACCTCGGCAACCTTT...................................................................................................................................................................................... 24 0 20 0.35 7 7 0 0 0
................................................................................................................................................................................................................................GGATTTGTGAGGTGAGCAGAGCTG... 24 0 3 0.33 1 1 0 0 0
...........................................................................................................................................................................................................................CCCACGGATTTGTGAGGTGAGCAGAGCTG... 29 0 3 0.33 1 0 1 0 0
............................................................................................................................................................................................................................CCACGGATTTGTGAGGTGTGCAGAGCT.... 27 1 3 0.33 1 1 0 0 0
...............................................................................................................................................................................................................................CGGATTTGTGAGGTGAGCAGAGC..... 23 0 3 0.33 1 1 0 0 0
................................................................................................................................................................................................................................GGATTTGTGAGGTGAGCAGAGCTGC.. 25 0 3 0.33 1 1 0 0 0
...............................................................................................................................................................................................................................CGGATTTGTGAGGTGAGCAGAGCT.... 24 0 3 0.33 1 1 0 0 0
............................................................................CGCCTTCTTTAAGTGGTGTGAGGTCCT.................................................................................................................................................... 27 0 20 0.30 6 6 0 0 0
...................................................................................................................................................................................................ACCCTTACCGTTCCATGAGGTACTCCC............................. 27 0 20 0.30 6 6 0 0 0
..........................................................................................................................................................................................................................TCCCACGGATTTGTGAGGTGAGCAG........ 25 0 4 0.25 1 0 1 0 0
.........TCCAGTTCCGACGTCACGTCTTCCCTCT...................................................................................................................................................................................................................... 28 0 20 0.25 5 0 5 0 0
........................................................................................................................................................................................................................ACTCCCACGGATTTGTGAGGTGAGCAG........ 27 0 4 0.25 1 1 0 0 0
............................................................................................................................................................................................................................CCACGGATTTGTGAGGTGAGCAGA....... 24 0 4 0.25 1 0 1 0 0
.............................................................................................................................................................................................................................CACGGATTTGTGAGGTGAGCACAG...... 24 1 4 0.25 1 0 1 0 0
.........................................................................................................................GAGATCGCTTTAACCCTCGCTTAAT......................................................................................................... 25 0 13 0.23 3 2 1 0 0
........................................................................................................................CGAGATCGCTTTAACCCTCGCTTAA.......................................................................................................... 25 0 13 0.23 3 3 0 0 0
.............GTTCCGACGTCACGTCTTCCC......................................................................................................................................................................................................................... 21 0 20 0.20 4 4 0 0 0
................CCGACGTCACGTCTTCCCTCTAAACTG................................................................................................................................................................................................................ 27 0 20 0.20 4 0 4 0 0
............................................................................................................................ATCGCTTTAACCCTCGCTTAATAAGAC.................................................................................................... 27 0 13 0.15 2 1 1 0 0
.......................................................................................................................TCGAGATCGCTTTAACCCTCGCTTAAT......................................................................................................... 27 0 13 0.15 2 2 0 0 0
...............................................................................................................TCGCTAACTCGAGATCGCTTT....................................................................................................................... 21 0 14 0.14 2 2 0 0 0
...................................................................TTAACGCAACGCCTTCTTTAAGTGGT.............................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0
...............CCCGACGTCACGTCTTCCCTCTAAA................................................................................................................................................................................................................... 25 1 20 0.10 2 0 2 0 0
...................ACGTCACGTCTTCCCTCTAAACT................................................................................................................................................................................................................. 23 0 20 0.10 2 2 0 0 0
...................................CTAAACTGGTAGTACCATGACCT................................................................................................................................................................................................. 23 0 20 0.10 2 0 2 0 0
..............TTCCGACGTCACGTCTTCCCTCT...................................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
.................................................CCATGACCTCGGCAACCTTTAACGCAA............................................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0
....................................................TGACCTCGGCAACCTTTAACGCAAC.............................................................................................................................................................................. 25 0 20 0.10 2 0 2 0 0
............AGTTCCGACGTCACGTCTTCCCTCTAAA................................................................................................................................................................................................................... 28 0 20 0.10 2 2 0 0 0
.........................................TGGTAGTACCATGACCTCGGCAACCTT....................................................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0
..........................................GGTAGTACCATGACCTCGGCAACC......................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
.................................................................................................................................................................................................CCACCCTTACCGTTCCATGAGGTACTCCC............................. 29 0 20 0.10 2 2 0 0 0
........................................................................................................................CGAGATCGCTTTAACTCTCGCTTAA.......................................................................................................... 25 1 13 0.08 1 1 0 0 0
.................................................................................................................GCTAACTCGAGATCGCTTTAACCCT................................................................................................................. 25 0 13 0.08 1 1 0 0 0
..........................................................................................................................AGATCGCTTTAACCCTCGCTTAATAGG...................................................................................................... 27 1 13 0.08 1 0 1 0 0
............................................................................................................................ATCGCTTTAACCCTCGCTTAAGAAGAC.................................................................................................... 27 1 13 0.08 1 0 1 0 0
......................................................................................................................CTCGAGATCGCTTTAACCCTC................................................................................................................ 21 0 13 0.08 1 1 0 0 0
................................................................................................................CGCTAACTCGAGATCGCTTTAACCC.................................................................................................................. 25 0 13 0.08 1 0 1 0 0
...................................................................................................................TAACTCGAGATCGCTTTAACCCT................................................................................................................. 23 0 13 0.08 1 0 1 0 0
.....................................................................................................................ACTCGAGATCGCTTTAACCCT................................................................................................................. 21 0 13 0.08 1 1 0 0 0
.....................................................................................................................ACTCGAGATCGCTTTAACCCTC................................................................................................................ 22 0 13 0.08 1 1 0 0 0
................................................................................................................CGCTAACTCGAGATCGCTTTAACCCT................................................................................................................. 26 0 13 0.08 1 0 1 0 0
..........................................................................................................................AGATCGCTTTAACCCTCGCTTAAT......................................................................................................... 24 0 13 0.08 1 0 1 0 0
.........................................................................................................................GAGATCGCTTTAACCCGCGCTTAAT......................................................................................................... 25 1 13 0.08 1 1 0 0 0
..............................................................................................................................CGCTTTAACCCTCGCTTA........................................................................................................... 18 0 14 0.07 1 1 0 0 0
................................................................................................................CGCTAACTCGAGATCGCTTTAA..................................................................................................................... 22 0 14 0.07 1 1 0 0 0
..............................................................................................................................CGCTTTAACCCTCGCTTAATAAGACGT.................................................................................................. 27 1 14 0.07 1 0 1 0 0
.............................................................................................................................TCGCTTTAACCCTCGCTTAATAAG...................................................................................................... 24 0 14 0.07 1 1 0 0 0
.............................................................................................................................CCGCTTTAACCCTCGCTTA........................................................................................................... 19 1 14 0.07 1 0 1 0 0
...............................................................................CTTCTTTAAGTGGTGTGAGGTCCTACT................................................................................................................................................. 27 0 18 0.06 1 1 0 0 0
.............................................................................GCCTTCTTTAAGTGGTGTGAGGTCCTACT................................................................................................................................................. 29 0 18 0.06 1 1 0 0 0
..........................................................CGGCAACCTTTAACGCAACGCCTTCTT...................................................................................................................................................................... 27 0 18 0.06 1 1 0 0 0
..........................................................CGGCAACCTTTAACGCAACGCCTTCTTT..................................................................................................................................................................... 28 0 18 0.06 1 1 0 0 0
..............................................................................CCTTCTTTAAGTGGTGTGAGGTCCTACT................................................................................................................................................. 28 0 18 0.06 1 1 0 0 0
................................................................CCTTTAACGCAACGCCTTCTTTAA................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
.........................................................................................TGGTGTGAGGTCCTACTCAAT............................................................................................................................................. 21 0 20 0.05 1 0 0 1 0
..................................................................................................................................................................................CGCGCAACTATAAGTCCACCC.................................................... 21 0 20 0.05 1 0 1 0 0
.........TCCAGTTCCGACGTCACGTCTTCCCTC....................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................CCACCCTTACCGTTCCATGAGGTACT................................ 26 0 20 0.05 1 1 0 0 0
...............CCCGACGTCACGTCTTCCCTTT...................................................................................................................................................................................................................... 22 2 20 0.05 1 0 1 0 0
.............................................................................GCCTTCTTTAAGTGGTGTGAGGTCCT.................................................................................................................................................... 26 0 20 0.05 1 0 0 0 1
..........................................................................................................................................................................................TATAAGTCCACCCTTAGCGTTCCAT........................................ 25 1 20 0.05 1 1 0 0 0
.........................................................................................................................................................................................................ACCGTTCCATGAGGTACTCCCAC........................... 23 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................CACCCTTACCGTTCCATGAGGTACTACC............................. 28 1 20 0.05 1 0 1 0 0
...........CAGTTCCGACGTCACGTCTGCCCTCTAA.................................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0
...........................TCTTCCCTCTAAACTGGTAGTACCAT...................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
.......................................................................................AGTGGTGTGAGGTCCTACTCAATGT........................................................................................................................................... 25 1 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................CCCTTACCGTTCCATGAGGTACTCCCA............................ 27 0 20 0.05 1 0 1 0 0
.....................GTCACGTCTTCCCTCTAAACT................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0
...............CCCGACGTCACGTCTTCCCTCTGA.................................................................................................................................................................................................................... 24 2 20 0.05 1 0 1 0 0
.........TCCAGTTCCGACGTCACGTCTTCCCTGT...................................................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0
.................................................................................................................................................................................ACGCGCGACTATAAGTCCACCCTTACCG.............................................. 28 1 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................CCCTTACCGTTCCATGAGGTACTCC.............................. 25 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................CATGAGGTACTCCCACGGA........................ 19 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................GTCCACCCTTACCGTTCCAT........................................ 20 0 20 0.05 1 0 1 0 0
.............................................AGTACCATGCCCTCGGCAACCTTT...................................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 1
..................................................................................................................................................................................................CACCCTTACCGTTCCATGAGGTACTCCC............................. 28 0 20 0.05 1 1 0 0 0
.........AAAAGTTCCGACGTCACGTCTTCCCTCT...................................................................................................................................................................................................................... 28 3 20 0.05 1 1 0 0 0
.................CGACGTCACGTCTTCCATCTAAACT................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................GCAACTATAAGTCCACCCTTAC................................................ 22 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................................TTACCGTTCCATGAGGTACTCCC............................. 23 0 20 0.05 1 0 1 0 0
.............................................................CAACCTTTAACGCAACGCCTTCTTT..................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
..............................TCCCTCTAAACTGGTAGTACCATGACC.................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
.................................................................................TCTTTAAGTGGTGTGAGGGC...................................................................................................................................................... 20 1 20 0.05 1 0 1 0 0
............................................................................CGCCTTCTTTAAGTGGTGTG........................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0
............................................................................CGCCTTCTTTAAGTGGTGGGAGGTCCT.................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
..................................................................................................................................................................................CGCGCAACTATAAGTCCACCCTTACCGTT............................................ 29 0 20 0.05 1 1 0 0 0
...............TCCGACGTCACGTCTTCCCTCTTAAC.................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0
................CCGACGTCACGTCTTCCCTCAG..................................................................................................................................................................................................................... 22 2 20 0.05 1 0 1 0 0
............................................................................CGCCTTCTTTAAGTGGTGTGAGGTCCTA................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
.........................................................TCGGCAACCTTTAACGCAACGCCGT......................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0
.................................................................................CCTTTAAGTGGTGTGAGGTCCTA................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0
...........CAGTTCCGACGTCACGTCTTCCCCCT...................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0
.................................................................................TCTTTAAGTGGTGTGAGGTC...................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0
.............TTTCCGACGTCACGTCTTCCCT........................................................................................................................................................................................................................ 22 1 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................GCAACTATAAGTCCACCCTTA................................................. 21 0 20 0.05 1 1 0 0 0
................CCGACGTCACGTCTTCCCTCTAAACTGG............................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
................CCGACGTCACGTCTTCCCTCTAAACGGGT.............................................................................................................................................................................................................. 29 1 20 0.05 1 0 1 0 0
...............................CCCTCTAAACTGGTAGTACCATGAC................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0
..........................................GGTAGTACCATGACCTCGACAACCTTT...................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
..................................................................................................................................................................................................CACCCTTACCGTTCCATAAGGTACTCCC............................. 28 1 20 0.05 1 0 1 0 0
................................................................CCTTTAACGCAACGCCTTCT....................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0
.......................................................................CGCAACGCCTTCTTTAAGTG................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
...............................................................................CTTCTTTAAGTGGTGTGAGGTCGT.................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0
...............................................................................CTTCTTTAAGTGGTGTGAGGTCCT.................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
.................................................CCATGACCTCGGCAACCTTTA..................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
......................................................................ACGCAACGCCTTCTTTAAGT................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0
................CCGACGTCACGTATTCCCTCT...................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
..............................TCCCTCTAAACTGGTAGTACCATGACCT................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0
...........................................................................ACGCCTTCTTTAAGTGGTGTGAGGTC...................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................GTCCACCCTTACCGTTCCATGAGGT................................... 25 0 20 0.05 1 0 1 0 0
................CCGACGTCACGTCTTCCCTCTAAACTGTT.............................................................................................................................................................................................................. 29 1 20 0.05 1 0 1 0 0
.............................................................................GCCTTCTTTAAGTGGTGTGAGGTCCTT................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
..................................................................................................GTCCTACTCAATCTCGCTAAA.................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
.................................................................CTTTAACGCAACGCCTTCTTTAAGT................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
...............TCCGACGTCACGTCTTCCCTCTAA.................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
...........CAGTTCCGACGTCACGTCTTCCCTCG...................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13250:1734075-1734325 + dan_1618 TGCATAATGAGGTCAAGGCTGCAGTGCAGAAGGGAGATTTGACCATCATGGTACTGGAGCCGTTGGAAATTGCGT---TGCGGAAGAAATTCACCACACTCCAGGATGAGTTAGAGCGATTGAGCTCTAGCGAAATTGGGAGCGAATTATTCTGAAAGTTCTCCCAGCTTGCCGCTAAAGTGCGCGTTGATATTCAGGTGGGAATGGCAAGGTACTCCATGAGGGTGCC-------TAAACACTCCACTCGTCTCGACGGC
droBip1 scf7180000394742:10416-10642 - TGCATCAGAAGGTCAAGGCTGCA------------------AGCATTATGACCCTCGAGTCAATGGAGAA---GCGTCTGTAA----GATTCACCACGCTTCAGGAGAAATTGGAGGAGCTAAACTATTGCAAAATCGCAATAGATTTATATTGAAAATTCTCTCAGCTTGTCACGGACGTGCACGTTGATTTCCAGGTGGACGTTGACAAGCGCTCCATGA--GTATC-------TGCCCACTCTACGCTTTTGAATGAT
droEug1 scf7180000408808:2951-3192 - TGCATCACAAGGTCAAGGCTGCGATGCGGACCGAGGTCTTGACCATTATGACCTTCGAGACAATGGAGAA---GCGTCTGCGTGACTGATTTGCCACGCTTCAGGAAGAGTTGGAGGAGCTGAATTATAGTGAAATCGGAAGTGATTTGTGTTGGAAATTCTTTCAGCTCGCCACGGACGTGCACGTCGACATCCAGGTGGAAGTTGAT-GGTACC----AGTGGTGCTGGTATTTCACTCACTCTATA-----------C
droSec2 scaffold_8088:654-804 - TGAGG------------------------------------------------CTGGAGCAGATTGA---TGAGC---TGCAAAGTGCCTTCAATGTTCTGCATACAGAACTGGAGGAATTGGACTTCGGCGAAATTGGCAGTGAAATGAGCGAGTCTTTCGATGAATTCATCGTTGAATTCAAGGCTAGTGTGCGCGCGGAAAT--------------------------------------------------------
droYak3 X:20909591-20909739 + C-----------------------------------------------------TGGAGCAGATTGA---TGAGT---TGCAAAGTGCCTTCAATGTTCTGCATACAGAACTGGAGGAATTGGATTTCGACGAAATTGGCAGTGAAATGAGCGAGAGATTCGATGAATTCATCGTTAAATTCAAGGCTAGTGTGCGCGCGGAAATAGC-----------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGCATAATGAGGTCAAGGCTGCAGTGCAGAAGGGAGATTTGACCATCATGGTACTGGAGCCGTTGGAAATTGCGT---TGCGGAAGAAATTCACCACACTCCAGGATGAGTTAGAGCGATTGAGCTCTAGCGAAATTGGGAGCGAATTATTCTGAAAGTTCTCCCAGCTTGCCGCTAAAGTGCGCGTTGATATTCAGGTGGGAATGGCAAGGTACTCCATGAGGGTGCC-------TAAACACTCCACTCGTCTCGACGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......TGAGGTCAAGGCTGCAGTGC..........................................................................................................................................................................................................................................2011.001010000
.......TGAGGTCAAGGCTGCAGTGCAGA.......................................................................................................................................................................................................................................2311.001100000
.........................................................................................TTCACCACACTCCAGGATGAGTTAGAG.................................................................................................................................................27200.6513940000
...........................................................CCGTTGGAAATTGCGT---TGCGGAAGA..............................................................................................................................................................................25200.6012390000
.........................................................................................TTCACCACACTCCAGGATGAGTTAGAGC................................................................................................................................................28200.50101000000
......................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAAT........................................................23200.50101000000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTAC..............................................25200.459540000
.........................................................................................TTCACCACACTCCAGGATGAGTTAG...................................................................................................................................................25200.408510020
..................................................................................................................................................................................................................................GCC-------TAAACACTCCACTCGTCTCGACGGC2830.331100000
............................................................................................................................................................................................................................................TAAACACTCCACTCGTCTCGACGGC2530.331100000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGGC.....................................................22200.306105000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCA....................................................23200.306510000
...................................................................................................TCCAGGATGAGTTAGAGCGATTGAGCTC......................................................................................................................................28200.306600000
................................................................................................CACTCCAGGATGAGTTAGAGCGATTG...........................................................................................................................................26200.306600000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGG.................................................22200.255032000
...........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCAAGG.................................................25200.255410000
...................................................................................................TCCAGGATGAGTTAGAGCGATTG...........................................................................................................................................23200.255500000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAAGG.................................................26200.255041000
......................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAATGGC.....................................................26200.255500000
............................................................................................................................................................................................................TGGCAAGGTACTCCATGAGGGTGC.................................24200.204040000
................................GGAGATTTGACCATCATGGTACTGGA...........................................................................................................................................................................................................26200.204400000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTA...............................................24200.204301000
...................................................................................................TCCAGGATGAGTTAGAGCGATT............................................................................................................................................22200.204400000
...................TGCAGTGCAGAAGGGAGATTTGACC.........................................................................................................................................................................................................................25200.204040000
............................................................................................................................................................................................GATATTCAGGTGGGAATGGCAAGGTAC..............................................27200.204400000
....................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGG...........................................................22200.204220000
...........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCA....................................................22200.204310000
....................................................................................................CCAGGATGAGTTAGAGCGATTGAG.........................................................................................................................................24200.204400000
......................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAATGG......................................................25200.204400000
................................GGAGATTTGACCATCATGGTAC...............................................................................................................................................................................................................22200.204040000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAG..................................................21200.204400000
.............................................................................................................................TCTAGCGAAATTGGGAGCGAATTATT..............................................................................................................26130.152110000
............TCAAGGCTGCAGTGCAGAAGGGAG.................................................................................................................................................................................................................................24200.153030000
..........................................................................................TCACCACACTCCAGGATGAGTTAGAGC................................................................................................................................................27200.153300000
............................................................................................................................................................................................GATATTCAGGTGGGAATGGCAAGGTA...............................................26200.153300000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACT.............................................26200.153030000
...................................................TACTGGAGCCGTTGGAAATTGCGT---T......................................................................................................................................................................................25200.153300000
...........................................................CCGTTGGAAATTGCGT---TGCGGAAGAA.............................................................................................................................................................................26200.153210000
...........................................CATCATGGTACTGGAGCCGTTG....................................................................................................................................................................................................22200.153300000
............................................................................................................................................................................................GATATTCAGGTGGGAATGGCAAGG.................................................24200.153210000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGG......................................................21200.153300000
...........................AGAAGGGAGATTTGACCATCATGG..................................................................................................................................................................................................................24200.153210000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGT................................................23200.153200010
.........................................................................................TTCACCACACTCCAGGATGAG.......................................................................................................................................................21200.102020000
...........................................................................................CACCACACTCCAGGATGAGTTAGA..................................................................................................................................................24200.102200000
.......................................................................................................................................................................................GCGTTGATATTCAGGTGGGAATGG......................................................24200.102110000
..............................AGGGAGATTTGACCATCATGGTAC...............................................................................................................................................................................................................24200.102011000
......................................................................TGCGT---TGCGGAAGAAATTC.........................................................................................................................................................................19200.102020000
...........................................................................................CACCACACTCCAGGATGAGTTAGAGCGA..............................................................................................................................................28200.102200000
...........................................................CCGTTGGAAATTGCGT---TGCGGA.................................................................................................................................................................................22200.102100010
...........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCAAG..................................................24200.102101000
...................TGCAGTGCAGAAGGGAGATTTGACCA........................................................................................................................................................................................................................26200.102200000
.........................GCAGAAGGGAGATTTGACCATC......................................................................................................................................................................................................................22200.102110000
....................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAATGGC.....................................................28200.102200000
.......................................................GGAGCCGTTGGAAATTGCGT---TGC....................................................................................................................................................................................23200.102200000
...........................................................CCGTTGGAAATTGCGT---TGCGGAA................................................................................................................................................................................23200.102200000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAAG..................................................25200.102200000
................................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTC............................................25200.102200000
........................................GACCATCATGGTACTGGAGCCGT......................................................................................................................................................................................................23200.102200000
..........................................................................................TCACCACACTCCAGGATGAGTTAGAG.................................................................................................................................................26200.102200000
................................GGAGATTTGACCATCATGGTACTGGAG..........................................................................................................................................................................................................27200.102020000
..........................................................GCCGTTGGAAATTGCGT---TGCGG..................................................................................................................................................................................22200.102101000
...................................................................................................TCCAGGATGAGTTAGAGC................................................................................................................................................18200.102000002
..............................................................................................................................................................................................................................................AACACTCCACTCGTCTCGACGG.22200.102200000
...................................................................................................TCCAGGATGAGTTAGAGCGATTGAGCT.......................................................................................................................................27200.102010010
...........................AGAAGGGAGATTTGACCATCATGGTAC...............................................................................................................................................................................................................27200.102020000
................................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACT.............................................24200.102200000
....................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAA.........................................................24200.102020000
.......................................................................................................................TTGAGCTCTAGCGAAATTGGGA........................................................................................................................22130.081010000
........................................................................................................................TGAGCTCTAGCGAAATTGGGA........................................................................................................................21130.081100000
.............................................................................................................................TCTAGCGAAATTGGGAGCGA....................................................................................................................20130.081100000
.......................................................................................................................TTGAGCTCTAGCGAAATTGGGAGC......................................................................................................................24130.081001000
........................................................................................................................TGAGCTCTAGCGAAATTGGGAGC......................................................................................................................23130.081010000
.............................................................................................................................TCTAGCGAAATTGGGAGCGAATTATTC.............................................................................................................27130.081100000
.....................................................................................................................GATTGAGCTCTAGCGAAATTGGGAG.......................................................................................................................25130.081100000
...............................................................................................................................TAGCGAAATTGGGAGCGAATTATTCTG...........................................................................................................27130.081100000
...................................................................................................................GCGATTGAGCTCTAGCGAAATTG...........................................................................................................................23140.071010000
.....................................................................................................................GATTGAGCTCTAGCGAAATTG...........................................................................................................................21140.071000010
..................................................................................GAAGAAATTCACCACACTCCAGGATG.........................................................................................................................................................26180.061100000
..........................................................GCCGTTGGAAATTGCGT---TGCGGAAGA..............................................................................................................................................................................26180.061100000
..........................................................GCCGTTGGAAATTGCGT---TGCGGA.................................................................................................................................................................................23190.051100000
..........................................................GCCGTTGGAAATTGCGT---TGCGGAA................................................................................................................................................................................24190.051010000
....................GCAGTGCAGAAGGGAGATTTGACC.........................................................................................................................................................................................................................24200.051010000
.......................................................GGAGCCGTTGGAAATTGCGT---TGCGG..................................................................................................................................................................................25200.051010000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAAGGTA...............................................28200.051010000
..............................AGGGAGATTTGACCATCATGGTACTGGA...........................................................................................................................................................................................................28200.051100000
.................................................................................................ACTCCAGGATGAGTTAGAGCGATTGA..........................................................................................................................................26200.051010000
................................GGAGATTTGACCATCATGGTACT..............................................................................................................................................................................................................23200.051010000
..........................................................................T---TGCGGAAGAAATTCACCACACTCCAG.............................................................................................................................................................27200.051010000
................................................................................................................................................................................................................................................CACTCCACTCGTCTCGACGGC21200.051100000
..................................................................AAATTGCGT---TGCGGAAGAAATTCAC.......................................................................................................................................................................25200.051001000
...........................................................CCGTTGGAAATTGCGT---TGCGG..................................................................................................................................................................................21200.051100000
...................................................TACTGGAGCCGTTGGAAATTGCGT---TG.....................................................................................................................................................................................26200.051010000
...........................AGAAGGGAGATTTGACCATCATGGTACT..............................................................................................................................................................................................................28200.051010000
.........................................................................................TTCACCACACTCCAGGATGAGTTA....................................................................................................................................................24200.051100000
............................GAAGGGAGATTTGACCATCATGGTAC...............................................................................................................................................................................................................26200.051010000
............................................................................................................................................................................................................TGGCAAGGTACTCCATGAGGGTG..................................23200.051010000
.......................................................................................................................................................................................GCGTTGATATTCAGGTGGGAATG.......................................................23200.051100000
...................................................................................AAGAAATTCACCACACTCCAGGAC..........................................................................................................................................................24200.051010000
......................................................TGGAGCCGTTGGAAATTGCGT---TGC....................................................................................................................................................................................24200.051001000
..............................................................TTGGAAATTGCGT---TGCGGAAGAAATT..........................................................................................................................................................................26200.051001000
......................................TTGACCATCATGGTACTGGAGC.........................................................................................................................................................................................................22200.051010000
.............................................................................................................................................................................................ATATTCAGGTGGGAATGGCAAGGTA...............................................25200.051100000
...............................................................................................................................................................................................................................................ACACTCCACTCGTCTCGACGG.21200.051100000
...................................................................................................TCCAGGATGAGTTAGAGCGATTGA..........................................................................................................................................24200.051000010
...........................................................................................CACCACACTCCAGGATGAGTTAGAGC................................................................................................................................................26200.051100000
................................................................................................................................................................................................TTCAGGTGGGAATGGCAAGG.................................................20200.051010000
...................................................................................................................................................................................GTGCGCGTTGATATTCAGGTGGGA..........................................................24200.051100000
.................................................................................................................................................................................................TCAGGTGGGAATGGCAAGG.................................................19200.051100000
.........................................................................................................................................................................................................GAATGGCAAGGTACTCCATGAGGGT...................................25200.051010000
......................................................................................AAATTCACCACACTCCAGGAT..........................................................................................................................................................21200.051010000
...........GTCAAGGCTGCAGTGCAGAAGGGAC.................................................................................................................................................................................................................................25200.051010000
...........................................................................................................................................................................................TGATATTCAGGTGGGAATGGCAAGGT................................................26200.051010000
....................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAAA........................................................25200.051010000
..................................................................................................CTCCAGGATGAGTTAGAGCGA..............................................................................................................................................21200.051100000
.......................................................................................AATTCACCACACTCCAGGATGAGTTAG...................................................................................................................................................27200.051100000
...................................................TACTGGAGCCGTTGGAAATTGCGT---.......................................................................................................................................................................................24200.051100000
............................GAAGGGAGATTTGACCATCATGGT.................................................................................................................................................................................................................24200.051010000
...........................................................................................CACCACACTCCAGGATGAGTTAGAG.................................................................................................................................................25200.051100000
................................GGAGATTTGACCATCATGGTACTGC............................................................................................................................................................................................................25200.051010000
..............AAGGCTGCAGTGCAGAAGGGAGA................................................................................................................................................................................................................................23200.051010000
.............................................................................................................................................................................................................GGCAAGGTACTCCATGAGGGTGCC-------.........................24200.051100000
...............................................................................................................................................................................................ATTCAGGTGGGAATGGCAAGGTACTCC...........................................27200.051100000
..........................................................................................TCACCACACTCCAGGATGAGTTAG...................................................................................................................................................24200.051100000
...................TGCAGTGCAGAAGGGAGATTTGACCATCA.....................................................................................................................................................................................................................29200.051100000
................................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGT................................................21200.051100000
...........................................................CCGTTGGAAATTGCGT---TGCGGAAG...............................................................................................................................................................................24200.051010000
.....................................................................................................................................................................................GCGCGTTGATATTCAGGTG.............................................................19200.051100000
......................................................................................................................................................................................CGCGTTGATATTCAGGTGGGA..........................................................21200.051001000
.............................AAGGGAGATTTGACCATCATGGTACTGG............................................................................................................................................................................................................28200.051100000
...................TGCAGTGCAGAAGGGAGATTTGAC..........................................................................................................................................................................................................................24200.051010000
................................GGAGATTTGACCATCATGGTACTGG............................................................................................................................................................................................................25200.051100000
.............................................................................................................................................................................................ATATTCAGGTGGGAATGGCAAGGT................................................24200.051100000
..............................................................................................................................................................................................................................................AACACTCCACTCGTCTCGACGGC23200.051010000
......................................TTGACCATCATGGTACTGGAGCCGTTG....................................................................................................................................................................................................27200.051100000
....................GCAGTGCAGAAGGGAGATTTGAC..........................................................................................................................................................................................................................23200.051010000
...................................................................AATTGCGT---TGCGGAAGAAATTCACCA.....................................................................................................................................................................26200.051100000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACTC............................................27200.051010000
........................................................................................ATTCACCACACTCCAGGATGA........................................................................................................................................................21200.051010000
..........................................................................................................................................................................................................AATGGCAAGGTACTCCATGAGGGTG..................................25200.051100000
....................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAATGG......................................................27200.051010000
..........................CAGAAGGGAGATTTGACCATCATGGTAC...............................................................................................................................................................................................................28200.051100000
.............................................................................................................................................................................................ATATTCAGGTGGGAATGGCAAG..................................................22200.051100000
...............................................................................................................................................................................................ATTCAGGTGGGAATGGCAAGGTA...............................................23200.051100000
.....................................................................................GAAATTCACCACACTCCAGGAT..........................................................................................................................................................22200.051010000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACTCC...........................................28200.051010000
.........................................................................................TTCACCACACTCCAGGATGAGTTAGAGT................................................................................................................................................28200.051000010
............................GAAGGGAGATTTGACCATCATGGTACTG.............................................................................................................................................................................................................28200.051100000
...........................................................................................................GAGTTAGAGCGATTGAGCTC......................................................................................................................................20200.051100000
.................................................................................................................................................................................................TCAGGTGGGAATGGCAAGGTAC..............................................22200.051100000
................................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTCCA..........................................27200.051100000
......................AGTGCAGAAGGGAGATTTGACCATC......................................................................................................................................................................................................................25200.051010000
............................................................................................................................................................................................................TGGCAAGGTACTCCATGAGGGC...................................22200.051010000
............................................................CGTTGGAAATTGCGT---TGCGGAAGA..............................................................................................................................................................................24200.051010000
....................................ATTTGACCATCATGGTACTGGAGCCG.......................................................................................................................................................................................................26200.051100000
..............................................................................................CACACTCCAGGATGAGTTAGAGCGAT.............................................................................................................................................26200.051100000
.........................................................................................................ATGAGTTAGAGCGATTGAGCT.......................................................................................................................................21200.051000010
..............................................................TTGGAAATTGCGT---TGCGGAAGAAA............................................................................................................................................................................24200.051100000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAATGGCAA...................................................24200.051100000
..............................................................................................................................................................................................TATTCAGGTGGGAATGGCAAGGTACC.............................................26200.051010000
................GGCTGCAGTGCAGAAGGGAGATTTG............................................................................................................................................................................................................................25200.051100000
...............................................................................................................................................................................................ATTCAGGTGGGAATGGCAAGGT................................................22200.051100000
......................................................................................................................................................................................CGCGTTGATATTCAGGTGGGAATG.......................................................24200.051000001
.................................GAGATTTGACCATCATGGTA................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................TGCGCGTTGATATTCAGGTGGGAATG.......................................................26200.051100000
.........................................................................................................................................................................................GTTGATATTCAGGTGGGAATGG......................................................22200.051001000
.......................................TGACCATCATGGTACTGGAGCCGT......................................................................................................................................................................................................24200.051100000
.....................................................................TTGCGT---TGCGGAAGAAATTCACCACA...................................................................................................................................................................26200.051010000
..........................................................................................................................................................................................TTGATATTCAGGTGGGAA.........................................................18200.051010000
................................................................................................CACTCCAGGATGAGTTAGAGCGAT.............................................................................................................................................24200.051010000
...................TGCAGTGCAGAAGGGAGATTTGA...........................................................................................................................................................................................................................23200.051001000
.............................AAGGGAGATTTGACCATCATGGTACTG.............................................................................................................................................................................................................27200.051100000
.....................................................................TTGCGT---TGCGGAAGAAATTCACCA.....................................................................................................................................................................24200.051100000
...........................................................................................CACCACACTCCAGGATGAGTTA....................................................................................................................................................22200.051100000
....................................................................................................................................................................................TGCGCGTTGATATTCAGG...............................................................18200.051010000
................................................................................................................................................................................................TTCAGGTGGGAATGGCAAGGTACTCCAT.........................................28200.051100000
.......................................TGACCATCATGGTACTGGAGCCGTTG....................................................................................................................................................................................................26200.051001000
.................................GAGATTTGACCATCATGGTACTGGAG..........................................................................................................................................................................................................26200.051010000
..................................................................................................................................................................................................CAGGTGGGAATGGCAAGGTACTCC...........................................24200.051010000
..................................................................................GAAGAAATTCACCACACTCCAGG............................................................................................................................................................23200.051010000
droBip1
TGCATCAGAAGGTCAAGGCTGCA------------------AGCATTATGACCCTCGAGTCAATGGAGAA---GCGTCTGTAA----GATTCACCACGCTTCAGGAGAAATTGGAGGAGCTAAACTATTGCAAAATCGCAATAGATTTATATTGAAAATTCTCTCAGCTTGTCACGGACGTGCACGTTGATTTCCAGGTGGACGTTGACAAGCGCTCCATGA--GTATC-------TGCCCACTCTACGCTTTTGAATGATSizeHit CountTotal NormTotal
No Reads
droEug1
TGCATCACAAGGTCAAGGCTGCGATGCGGACCGAGGTCTTGACCATTATGACCTTCGAGACAATGGAGAA---GCGTCTGCGTGACTGATTTGCCACGCTTCAGGAAGAGTTGGAGGAGCTGAATTATAGTGAAATCGGAAGTGATTTGTGTTGGAAATTCTTTCAGCTCGCCACGGACGTGCACGTCGACATCCAGGTGGAAGTTGAT-GGTACC----AGTGGTGCTGGTATTTCACTCACTCTATA-----------CSizeHit CountTotal NormTotal
No Reads
droSec2
TGAGG------------------------------------------------CTGGAGCAGATTGA---TGAGC---TGCAAAGTGCCTTCAATGTTCTGCATACAGAACTGGAGGAATTGGACTTCGGCGAAATTGGCAGTGAAATGAGCGAGTCTTTCGATGAATTCATCGTTGAATTCAAGGCTAGTGTGCGCGCGGAAAT--------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................TTCATCGTTGAATTCAAGGCTAGTGT....................................................................26200.951900181
..........................................................................C---TGCAAAGTGCCTTCAATGTTCT.................................................................................................................................................................23200.601212000
...................................................................................................TGCATACAGAACTGGAGGAATTGGAC........................................................................................................................................26200.4599000
..........................................................................................................................................................................ATCGTTGAATTCAAGGCTAGTGTGCG.................................................................26200.3066000
......................................................................TGAGC---TGCAAAGTGCCTTCAATGTTC..................................................................................................................................................................26200.1533000
...........................................................................................................................................................................TCGTTGAATTCAAGGCTAGTGTGC..................................................................24200.1022000
.......................................................................................................................................TTGGCAGTGAAATGAGCGAGTC........................................................................................................22200.1022000
....G------------------------------------------------CTGGAGCAGATTGA---TGAGC---TGCAAAG................................................................................................................................................................................27200.1020002
......................................................TGGAGCAGATTGA---TGAGC---TGCAAAGTGC.............................................................................................................................................................................28200.1020200
..........................................................................................................................................................................ATCGTTGAATTCAAGGCTAGTGTGCGCG...............................................................28200.0510100
......................................................................................................ATACAGAACTGGAGGAATTGGAC........................................................................................................................................23200.0511000
..........................................................................................................................................................................ATCGTTGAATTCAAGGCTAGTGTG...................................................................24200.0510010
.............................................................................................................................................................................GTTGAATTCAAGGCTAGTGTGCGCGCG.............................................................27200.0511000
TGAGG------------------------------------------------CTGGAGCAGATTGA---TG.............................................................................................................................................................................................21200.0510010
droYak3
C-----------------------------------------------------TGGAGCAGATTGA---TGAGT---TGCAAAGTGCCTTCAATGTTCTGCATACAGAACTGGAGGAATTGGATTTCGACGAAATTGGCAGTGAAATGAGCGAGAGATTCGATGAATTCATCGTTAAATTCAAGGCTAGTGTGCGCGCGGAAATAGC-----------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................TGAAATGAGCGAGAGATTCGATGAAT.............................................................................................2611.00100000010000
........................................................................................................................................................................TCATCGTTAAATTCAAGGCTAGTGTGCG.................................................................2841.00400000000004
............................................................................................................................................AGTGAAATGAGCGAGAGATTCGATG................................................................................................2511.00101000000000
..............................................................................................................................................TGAAATGAGCGAGAGATTCGATGAATT............................................................................................2711.00101000000000
...............................................................................................................................................GAAATGAGCGAGAGATTCGATGAAT.............................................................................................2511.00101000000000
..........................................................GCAGATTGA---TGAGT---TGCAAAGTGCCT...........................................................................................................................................................................2620.50101000000000
........................................................................................................................................................................................GGCTAGTGTGCGCGCGGAAATAGC-----------------------------------------------------24200.45909000000000
.......................................................................................................................TTGGATTTCGACGAAATTGGCAGTGA....................................................................................................................26200.40801000000007
.......................................................................................................................TTGGATTTCGACGAAATTGGCAGTG.....................................................................................................................25200.40801000000007
......................................................................................................................ATTGGATTTCGACGAAATTGGCAGTG.....................................................................................................................26200.35700000000007
...................................................................................................TGCATACAGAACTGGAGGAATTGGAT........................................................................................................................................26200.25503000020000
.......................................................................................................................TTGGATTTCGACGAAATTGGCAGTGAA...................................................................................................................27200.25501000010003
........................................................................................................................................................................TCATCGTTAAATTCAAGGCTAGTGT....................................................................2540.25100100000000
...............................................................................................................................................................................TAAATTCAAGGCTAGTGTGCGCGCG.............................................................2540.25101000000000
...........................................................................................CAATGTTCTGCATACAGAACTGGAGG................................................................................................................................................26200.15300300000000
......................................................................................................................................................................................AAGGCTAGTGTGCGCGCGGAAATAGC-----------------------------------------------------26200.15302000010000
.......................................................................................................................TTGGATTTCGACGAAATTGGCAGC......................................................................................................................24200.10200200000000
.....................................................................................TGCCTTCAATGTTCTGCATACAGAACT.....................................................................................................................................................27200.10202000000000
.............................................................................................................................TTCGACGAAATTGGCAGTGAAATG................................................................................................................24200.10202000000000
............................................................................................................................TTTCGACGAAATTGGCAGTGAAATG................................................................................................................25200.05101000000000
............................................................................................AATGTTCTGCATACAGAACTGGAGG................................................................................................................................................25200.05101000000000
........................................................................................................................................................................................GGCTAGTGTGCGCGCGGAAATAG......................................................23200.05101000000000
................................................................................................................................GACGAAATTGGCAGTGAAATGAGCG............................................................................................................25200.05101000000000
..............................................................................TGCAAAGTGCCTTCAATGTTCTGCATA............................................................................................................................................................27200.05101000000000
.......................................................................................................TACAGAACTGGAGGAATTGGATTTC.....................................................................................................................................25200.05101000000000
.................................................................................................................................................................................AATTCAAGGCTAGTGTGCGCGCGG............................................................24200.05101000000000
..............................................................................................................................TCGACGAAATTGGCAGTGAAATGAG..............................................................................................................25200.05101000000000
..................................................................................................................................CGAAATTGGCAGTGAAATGAGC.............................................................................................................22200.05101000000000
.......................................................................................................TACAGAACTGGAGGAATTGGATTTCG....................................................................................................................................26200.05101000000000
...............................................................................................GTTCTGCATACAGAACTGGAGG................................................................................................................................................22200.05101000000000
.....................................................................................................CATACAGAACTGGAGGAATTGGA.........................................................................................................................................23200.05101000000000
.............................................................................................................................TTCGACGAAATTGGCAGTGAAATGAG..............................................................................................................26200.05101000000000
..............................................................................................TGTTCTGCATACAGAACTGGAGGAATT............................................................................................................................................27200.05101000000000
.......................................................................................................................TTGGATTTCGACGAAATTGGCAGTGAAA..................................................................................................................28200.05101000000000
.......................................................................................................................TTGGATTTCGACGAAATTGGCAGT......................................................................................................................24200.05101000000000
................................................................................................................GGAGGAATTGGATTTCGACGAAATTGG..........................................................................................................................27200.05101000000000

Generated: 05/18/2015 at 02:33 AM