ID:

dan_16

 Coordinate:

scaffold_13250:3108686-3108748 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.5

Flybase annnotation

utr3 [utr3_minus_10826]

No Repeatable elements found

Sense Strand Reads

ACTAGACTGGCTTAGCTTCGGTAGATCATAAAAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCATATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAATGTGTTTTCATAAATACAACACAAAAAGTT

***********************************.((((((...((.((((((((((((..(((((((.((................)).)))))))..))))))))))))))...))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V106

head

 M058

embryo

 V055

head

 M044

female body

 V105

male body		 V039

embryo
..................................................TTTAGAATTCCTACGCTTTACC........................................................................................... 22 0 1 4574.00 4574 2091 1897 140 372 36 38
..........................................................................................CAAAGCGTTTGGATTCTGGAAC................................................... 22 0 1 2484.00 2484 1321 288 484 119 260 12
..................................................TTTAGAATTCCTACGCTTTAC............................................................................................ 21 0 1 854.00 854 294 501 23 27 2 7
..........................................................................................CAAAGCGTTTGGATTCTGGAACA.................................................. 23 1 1 389.00 389 328 2 23 4 32 0
..................................................TGTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 243.00 243 0 241 2 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAA.................................................... 21 0 1 199.00 199 103 7 50 11 26 2
..................................................TTTAGAATTCCTACGCTTTACA........................................................................................... 22 1 1 89.00 89 10 74 0 2 0 3
..........................................................................................CAAAGCGTTTGGATTCTGGA..................................................... 20 0 1 87.00 87 52 1 21 4 9 0
..................................................TTTAGAATTCCTACGCTTTACCG.......................................................................................... 23 0 1 83.00 83 64 9 0 9 0 1
..................................................TGTAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 51.00 51 0 51 0 0 0 0
...................................................TTAGAATTCCTACGCTTTACC........................................................................................... 21 0 1 49.00 49 9 12 0 28 0 0
..................................................TTTAGAATTCCTACGCTTTA............................................................................................. 20 0 1 48.00 48 32 11 3 1 1 0
..........................................................................................CAAAGCGTTTGGATTCTGG...................................................... 19 0 1 48.00 48 37 0 7 1 3 0
..........................................................................................CAAAGCGTTTGGATTCTGGAACT.................................................. 23 1 1 45.00 45 37 0 4 1 3 0
..........................................................................................CAAAGCGTTTGGATTCTGGAAA................................................... 22 1 1 35.00 35 27 3 0 2 3 0
..................................................TTCAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 35.00 35 1 34 0 0 0 0
..................................................TTTTGAATTCCTACGCTTTACC........................................................................................... 22 1 1 33.00 33 0 33 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAAC................................................... 22 1 1 30.00 30 2 26 1 0 0 1
...........................................................................................AAAGCGTTTGGATTCTGGAAC................................................... 21 0 1 29.00 29 14 0 1 12 2 0
..................................................TTTAGAATTCCTACGCTTTGCC........................................................................................... 22 1 1 28.00 28 21 1 3 3 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGAA.................................................... 22 0 1 27.00 27 23 0 1 3 0 0
........................................................................GTTGCATATGAAATTAGG......................................................................... 18 0 1 25.00 25 24 0 0 0 0 1
..................................................TTTAGAATTCCTACGCTTTACCA.......................................................................................... 23 1 1 25.00 25 0 23 0 0 0 2
..................................................TTTAGAATTCCTACGCTTTACAA.......................................................................................... 23 2 1 24.00 24 0 23 0 0 0 1
..................................................TTTGGAATTCCTACGCTTTACC........................................................................................... 22 1 1 23.00 23 19 2 2 0 0 0
..........................................................................................CGAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 23.00 23 3 20 0 0 0 0
..........................................................................................CAAATCGTTTGGATTCTGGAAC................................................... 22 1 1 21.00 21 17 0 0 0 4 0
..........................................................................................CAAAGCGTTTGGATTCTGGAGC................................................... 22 1 1 20.00 20 12 0 3 0 5 0
..................................................CTTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 19.00 19 5 11 1 2 0 0
..................................................TTTAGAATTCCTACGATTTACC........................................................................................... 22 1 1 18.00 18 18 0 0 0 0 0
..................................................TTGAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 18.00 18 16 0 2 0 0 0
..................................................TTTAGAATGCCTACGCTTTACC........................................................................................... 22 1 1 18.00 18 1 0 0 17 0 0
..................................................TTTAGAATTCCTACGCTTT.............................................................................................. 19 0 1 16.00 16 12 3 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGTAAC................................................... 22 1 1 16.00 16 10 2 2 0 2 0
..................................................TTTAGAATTCCTACTCTTTACC........................................................................................... 22 1 1 15.00 15 12 1 1 1 0 0
..................................................TGTAGAATTCCTACGCTTTACA........................................................................................... 22 2 1 15.00 15 0 15 0 0 0 0
..................................................TTTAGAATTCATACGCTTTACC........................................................................................... 22 1 1 14.00 14 6 7 1 0 0 0
..................................................TGTTGAATTCCTACGCTTTACC........................................................................................... 22 2 1 14.00 14 0 14 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTAA............................................................................................ 21 1 1 14.00 14 2 12 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCGT......................................................................................... 24 0 1 13.00 13 12 0 1 0 0 0
..........................................................................................CAATGCGTTTGGATTCTGGAAC................................................... 22 1 1 12.00 12 1 11 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 12.00 12 7 0 5 0 0 0
..................................................TTTAGAATTCCTACGCTTTATC........................................................................................... 22 1 1 12.00 12 11 0 1 0 0 0
..................................................GTTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 12.00 12 1 10 0 1 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGA..................................................... 21 0 1 12.00 12 7 0 4 1 0 0
.................................................CTTTAGAATTCCTACGCTTTACC........................................................................................... 23 1 1 12.00 12 0 12 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAAT................................................... 22 1 1 11.00 11 7 0 3 0 1 0
..................................................TTTATAATTCCTACGCTTTACC........................................................................................... 22 1 1 11.00 11 8 0 2 0 0 1
..................................................TTCAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 11.00 11 0 11 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTAAC........................................................................................... 22 1 1 10.00 10 9 1 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGG...................................................... 20 0 1 10.00 10 9 0 0 0 1 0
..........................................................................................CAAAGCGTTTGTATTCTGGAAC................................................... 22 1 1 10.00 10 7 0 2 0 1 0
..........................................................................................CAAAGCGTTTGGATTATGGAAC................................................... 22 1 1 10.00 10 5 0 5 0 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGGAAC................................................... 22 1 1 9.00 9 0 0 8 0 1 0
..................................................TTTAGAATCCCTACGCTTTACC........................................................................................... 22 1 1 9.00 9 2 2 1 4 0 0
..........................................................................................CAAAGCGTTTTGATTCTGGAAC................................................... 22 1 1 9.00 9 6 0 0 0 3 0
..........................................................................................CAAAGAGTTTGGATTCTGGAAC................................................... 22 1 1 9.00 9 4 0 2 0 3 0
..................................................TTTAGAATTCCTACGCTTTAGC........................................................................................... 22 1 1 9.00 9 6 0 0 0 2 1
..........................................................................................CAAGGCGTTTGGATTCTGGAAC................................................... 22 1 1 9.00 9 5 1 2 0 1 0
..........................................................................................CAAAGCGTTTGGATTCTGGATC................................................... 22 1 1 9.00 9 2 0 4 0 3 0
..................................................TTTAGAATTCCTACGCTTTACT........................................................................................... 22 1 1 8.00 8 4 4 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTAGAAC................................................... 22 1 1 8.00 8 4 0 3 1 0 0
..................................................TTTAGGATTCCTACGCTTTACC........................................................................................... 22 1 1 8.00 8 3 5 0 0 0 0
..................................................ATTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 8.00 8 0 6 2 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTGAAC................................................... 22 1 1 8.00 8 5 0 2 0 0 1
..................................................TTTAGAATTCCTGCGCTTTACC........................................................................................... 22 1 1 8.00 8 5 0 1 0 2 0
..................................................TTTTGAATTCCTACGCTTTAC............................................................................................ 21 1 1 8.00 8 0 8 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGGAAC................................................... 22 1 1 7.00 7 4 1 1 1 0 0
..........................................................................................TAAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 7.00 7 2 3 2 0 0 0
...................................................TTAGAATTCCTACGCTTTAC............................................................................................ 20 0 1 7.00 7 0 5 0 1 1 0
..................................................TTTAGAATTACTACGCTTTACC........................................................................................... 22 1 1 7.00 7 4 1 1 1 0 0
..................................................TTTAGAATTCCTCCGCTTTACC........................................................................................... 22 1 1 7.00 7 1 5 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAAAA.................................................. 23 2 1 6.00 6 2 0 1 2 1 0
..................................................TTTAGAGTTCCTACGCTTTACC........................................................................................... 22 1 1 6.00 6 3 2 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGGAC................................................... 22 1 1 6.00 6 3 0 3 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGGAAC................................................... 22 1 1 6.00 6 4 2 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTACCA.......................................................................................... 23 2 1 6.00 6 0 6 0 0 0 0
..................................................TCTAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 6.00 6 2 4 0 0 0 0
..........................................................................................CAAAGCGTGTGGATTCTGGAAC................................................... 22 1 1 6.00 6 0 0 3 3 0 0
..................................................TTGAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 6.00 6 6 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAACG.................................................. 23 1 1 6.00 6 4 0 1 0 0 1
..................................................TGTAGAATTCCTCCGCTTTACC........................................................................................... 22 2 1 6.00 6 0 6 0 0 0 0
..................................................TTTGGAATTCCTACGCTTTAC............................................................................................ 21 1 1 6.00 6 6 0 0 0 0 0
....................................................TAGAATTCCTACGCTTTACC........................................................................................... 20 0 1 6.00 6 1 3 0 2 0 0
..................................................TTTAGAATTCCTACGCTTTGC............................................................................................ 21 1 1 5.00 5 4 1 0 0 0 0
..........................................................................................GAAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 5.00 5 3 0 2 0 0 0
..................................................TTTAGAATTCCTACGCTTCACC........................................................................................... 22 1 1 5.00 5 1 1 3 0 0 0
..........................................................................................CAAAGCGTTTCGATTCTGGAAC................................................... 22 1 1 5.00 5 2 0 3 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGGAACA.................................................. 22 1 1 5.00 5 5 0 0 0 0 0
..................................................TTTAGAATTCCTATGCTTTACC........................................................................................... 22 1 1 5.00 5 2 2 0 0 1 0
..................................................TTTAGAATTCCTACGTTTTACC........................................................................................... 22 1 1 5.00 5 2 3 0 0 0 0
..................................................TTTAGAATTCCTACGCTTACC............................................................................................ 21 2 1 5.00 5 5 0 0 0 0 0
..........................................................................................CTAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 5.00 5 0 5 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTAAA........................................................................................... 22 2 1 5.00 5 0 4 0 0 0 1
..................................................TTTAGAATCCCTACGCTTTAC............................................................................................ 21 1 1 5.00 5 3 2 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGACC................................................... 22 1 1 5.00 5 3 0 0 0 2 0
..........................................................................................CAAAGCGTTTGGTTTCTGGAAC................................................... 22 1 1 5.00 5 0 0 4 0 1 0
..........................................................................................CAAAGCGTATGGATTCTGGAAC................................................... 22 1 1 4.00 4 0 0 1 3 0 0
..........................................................................................CAAAGCGTTTGCATTCTGGAAC................................................... 22 1 1 4.00 4 1 1 0 0 2 0
..........................................................................................CAAAGCGTTCGGATTCTGGAAC................................................... 22 1 1 4.00 4 2 0 1 0 1 0
..................................................TTTAGAATTTCTACGCTTTACC........................................................................................... 22 1 1 4.00 4 1 3 0 0 0 0
...................................................TTAGAATTCCTACGCTTTACCG.......................................................................................... 22 0 1 4.00 4 0 1 0 3 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAC.................................................... 21 2 1 4.00 4 3 0 0 1 0 0
..................................................TTTAGAATTCCTACGCTTTACAAA......................................................................................... 24 3 1 4.00 4 0 4 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGAAACA.................................................. 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TTTAGAATTCCTACGATTTAC............................................................................................ 21 1 1 4.00 4 4 0 0 0 0 0
..................................................TTTAGAATTCATACGCTTTAC............................................................................................ 21 1 1 4.00 4 0 4 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGAAA................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................CAAAGCGCTTGGATTCTGGAAC................................................... 22 1 1 4.00 4 1 0 3 0 0 0
..................................................TTTAGAATTCCTACGCTCTACC........................................................................................... 22 1 1 4.00 4 2 2 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCGTT........................................................................................ 25 0 1 4.00 4 4 0 0 0 0 0
..................................................TTTAGAATTCTTACGCTTTACC........................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGCAAC................................................... 22 1 1 4.00 4 1 0 3 0 0 0
..................................................TTTAGAATTCCTACGCCTTACC........................................................................................... 22 1 1 4.00 4 2 1 1 0 0 0
..................................................TTTAGAATACCTACGCTTTACC........................................................................................... 22 1 1 4.00 4 0 0 0 4 0 0
..................................................TTTAGAATTCCTAAGCTTTACC........................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAG.................................................... 21 1 1 4.00 4 1 1 2 0 0 0
..................................................TGCAGAATTCCTACGCTTTAC............................................................................................ 21 2 1 4.00 4 0 4 0 0 0 0
..........................................................................................CAAAGCGTTTGGGTTCTGGAAC................................................... 22 1 1 4.00 4 0 1 1 0 2 0
..........................................................................................CAAAGCGTTAGGATTCTGGAAC................................................... 22 1 1 3.00 3 0 0 3 0 0 0
..........................................................................................CAAAGCGTTTGGATTTTGGAAC................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTCAC............................................................................................ 21 1 1 3.00 3 1 2 0 0 0 0
..........................................................................................CAAAGCGTTTGTATTCTGGAACA.................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................CAAAGCGTTGGGATTCTGGAAC................................................... 22 1 1 3.00 3 1 0 2 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGT..................................................... 20 1 1 3.00 3 2 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTGAACA.................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTTC............................................................................................ 21 1 1 3.00 3 0 2 0 0 0 1
..........................................................................................CAAAGCGTTTGAATTCTGGAA.................................................... 21 1 1 3.00 3 0 1 0 0 2 0
.................................................CTTTAGAATTCCTACGCTTTAC............................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0
..........................................................................................CAAAGCGTTTAGATTCTGGAAC................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTACCG.......................................................................................... 23 1 1 3.00 3 0 3 0 0 0 0
..................................................TATAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 3.00 3 0 3 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTCGAAC................................................... 22 1 1 3.00 3 1 0 1 0 0 1
...................................................TGAGAATTCCTACGCTTTACC........................................................................................... 21 1 1 3.00 3 0 3 0 0 0 0
..........................................................................................CAAAGCGTTTGGATCCTGGAAC................................................... 22 1 1 3.00 3 1 0 2 0 0 0
..........................................................................................CAAAGCGGTGGGATTCTGGAAC................................................... 22 2 1 3.00 3 0 0 2 0 0 1
..........................................................................................CAAAGCGGTTGGATTCTGGAAC................................................... 22 1 1 3.00 3 0 0 3 0 0 0
..................................................TGCAGAATTCCTACGCTTTACC........................................................................................... 22 2 1 3.00 3 0 3 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCAA......................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTG....................................................... 18 0 1 3.00 3 2 0 0 0 0 1
..................................................TTTAGAATTCCTACGCTTTAAAA.......................................................................................... 23 3 1 3.00 3 0 3 0 0 0 0
..............................AAAAAAGGGTATTGTGGAGT................................................................................................................. 20 0 1 3.00 3 0 1 0 2 0 0
..........................................................................................CAAAGCGATTGGATTCTGGAAC................................................... 22 1 1 2.00 2 0 0 2 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCT.......................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..................................................TTTAGGATTCCTACGCTTTAC............................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
..................................................TTCAGAATTCCTACGCTTTACA........................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..................................................GTTAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 2.00 2 0 1 0 1 0 0
.................................................CGTTAGAATTCCTACGCTTTACC........................................................................................... 23 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGCAC................................................... 22 1 1 2.00 2 1 0 1 0 0 0
..........................................................................................CAAAGGGTTTGGATTCTGGAAC................................................... 22 1 1 2.00 2 0 1 1 0 0 0
..................................................TGTAGAATTCCTACGCTTTAAA........................................................................................... 22 3 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAAG................................................... 22 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGTA.................................................... 21 1 1 2.00 2 0 0 2 0 0 0
..........................................................................................CACAGCGTTTGGATTCTGGAAC................................................... 22 1 1 2.00 2 1 0 1 0 0 0
..................................................TTTAGAATTCCTACGCTT............................................................................................... 18 0 1 2.00 2 0 1 1 0 0 0
..........................................................................................CCAAGCGTTTGGATTCTGGAAC................................................... 22 1 1 2.00 2 2 0 0 0 0 0
....................................................TAGAATTCCTACGCTTTAC............................................................................................ 19 0 1 2.00 2 0 1 0 1 0 0
..................................................TGTAGAATTCCTACGCTTT.............................................................................................. 19 1 1 2.00 2 0 2 0 0 0 0
..................................................TGTAGAATTCCTACACTTTACC........................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGGAA.................................................... 21 1 1 2.00 2 1 0 0 0 1 0
..........................................................................................CAAATCGTTTGGATTCTGGAACA.................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................CAAAGCGTCTGGATTCTGGAAC................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................CGATGCGTTTGGATTCTGGAAC................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAACGCGTTTGGATTCTGGAAC................................................... 22 1 1 2.00 2 1 0 0 0 1 0
..................................................ATTAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTTGAA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCATACGCTTTACA........................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..................................................TTTAGAATTCCCACGCTTTACC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTAC............................................................................................. 20 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................CAAAGCGTTTGGACTCTGGAAC................................................... 22 1 1 2.00 2 1 0 0 0 1 0
..........................................................................................CAAAGCGTTTGGCTTCTGGAACA.................................................. 23 2 1 2.00 2 1 0 1 0 0 0
..................................................TTTAGAATTCCTATGCTTTAC............................................................................................ 21 1 1 2.00 2 0 1 0 0 1 0
..........................................................................................CAAGGCGTTTGGATTCTGGAA.................................................... 21 1 1 2.00 2 1 0 1 0 0 0
........................................................................GTTTCATATGAAATTAGG......................................................................... 18 1 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTCCTACACTTTAC............................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0
................................................TCTTTAGAATTCCTACGCTTTACC........................................................................................... 24 2 1 2.00 2 0 2 0 0 0 0
..................................................TTTAGAATGCCTACGCTTTACG........................................................................................... 22 2 1 2.00 2 0 0 0 2 0 0
..........................................................................................CAACGCGTTTGGATTCTGGAA.................................................... 21 1 1 2.00 2 1 0 1 0 0 0
..................................................TTTAGAATTCCTACGCTTTACG........................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0
..................................................TTTACAATTCCTACGCTTTACC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................TTAGAATTTCTACGCTTTACC........................................................................................... 21 1 1 2.00 2 0 0 0 2 0 0
..................................................TTTAGAATTCCTACGCTTACCG........................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0
..................................................TTTAGAATTACTACGCTTTAC............................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0
..................................................TGTAGAATTCCTACGCTTTACT........................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
..................................................TTTTGAATTCCTACGCTTTACAA.......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATGCTGGAAC................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..................................................TTTAGAATTTCTACGCTTTA............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTATCGT......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGGAACG.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAAAATTCCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTGGAAA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGAAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAAGTCCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGTT.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..............................................GATCTTTAGAATTCCTACGCTTTACC........................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGC..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGAATTCCTACGCTGTTC............................................................................................ 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTTGATGCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGACTTCCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCTTTACAG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................AAGCGTTTGGATTCTGAAAC................................................... 20 1 1 1.00 1 0 0 0 0 1 0
.............................................................................................AGCGTTTGGATTCTGGAAC................................................... 19 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................CAAAGCGTTTGGATTCTGT...................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTTGAATTCCTACGCTTTA............................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGAG.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGAGTTTGGATTCTGGA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGGCC................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TATAGAATTCCTGCGCTTTA............................................................................................. 20 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGAGTCTGGCTC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGAGTCTGGAAC................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................CGAAACGTTTGGATTCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGAATTCCTACGCTTTACCGTTGC...................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
...................................................TGAGAATTCCTACGCTTTAC............................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTCGACA................................................... 22 3 1 1.00 1 0 0 1 0 0 0
...................................................TTAGAATTCCTACGCTTTA............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGGA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.................................................ATTTAGAATTCCTACGCTTTACC........................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
..................................................TTTAGAATCCCCACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAACAA................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................AGTAGAATTCCTACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGCTTGGAGTCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGAATTGCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AAAGCGTTTGGACTCTGGAAC................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................AGTAGAATTCCTACGCTTTAC............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAACCGTTTGGATTCTGGAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAGAGCGTTTGGATTCTGG...................................................... 19 1 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGAATTCCTACACTTT.............................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGAATTCCTACTCGTTACC........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTTGAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTTGATTCTGGAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCATTTGGATTCTGGAAC................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TTCAGAATTCCTACGTTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TTGAGAATTCCTACGCTTTACT........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGGTTCTGGAACA.................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..................................................TTCAGAATTCCTCCGCTTTAC............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................ATAATTCCTACGCTTTAC............................................................................................ 18 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAATCGTTTGTATTCTGGAAC................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................TTTAGAACTCCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................TTGGAGGTTTAGAGTTCCTACG.................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................AAAGGCGTTTGGATTCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TGTAGAATTTCTACGCTTTAC............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
.................................................CGTAAGAATTCCTACGCTTTACC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGCTTCTGGACC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAGAGCGTCTGGATTCTGGAAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGATTTACCG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................AAAAAAAGGGTATTGTGGAGT................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAATCGTTTGGATTCTGGAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTTCGCTTTACC........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGTTGAATTCCTACGCTTTAC............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGCTTATATTCTGGAAC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGTGTTTGGATTCTGGAGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAAAATTCCTACGCTTTAC............................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1
..........................................................................................GAAAGCGTTCGGATTCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...................................................TTAGAATTCCTATGCTTTAC............................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATGCCTACGCTTTACT........................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..................................................TTTAGAATTCCTACTCTTTAC............................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGTATGCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTGTAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...........................................TTCGAGTTTTAGAGTTCCTACG.................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................AAAAGCGTTTCGATTCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAATCGTTTGGATTCTGGAACT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGGAACAA................................................. 23 2 1 1.00 1 0 0 0 1 0 0
.........................................................................................CAAAAGCGTTTGGATTCTGGAAC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACGCGTTATC........................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1
..................................................CTTAGAATTCCTACGCTTTAC............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGGA..................................................... 20 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................CAAAGCGGTTGGATTCTGGAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGTGTTTGGATTCTGGAA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..................................................ATTAGAATTCCTACGCTTTACA........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCTTTTGGATTCTGGAA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTATAATCCCTACGCTTTAC............................................................................................ 21 2 1 1.00 1 0 0 0 0 0 1
..................................................TTTAGAACTCCTACGCTTTAA............................................................................................ 21 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................CAAAGCGTTTGCATTCTGGA..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................AAGTGTTTGGATTCTGGAAC................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AAAATCGTTTGGATTCTGGAAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTATGGAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTTGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TAAAGCGTTTGGATTCTGGAA.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGGATTCTGGAAGA.................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTCGGATTCCGGAAC................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAAGGCGTTTGGATTCTGGATC................................................... 22 2 1 1.00 1 0 0 0 0 0 1
..................................................TTTGGAATTCCTACGCTTTACCG.......................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................CAAAACGGTCGGATTCTGGAAC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................AAAACCGTTTGGATTCTGGAAC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................AAAGCGTTTGGATTCTGGA..................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................TATAGAATTCCTACGCTTTACC........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CAAAGCGTTTGCATTCTGGAA.................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..................................................CTTAGAATTCCTACGCTTTACA........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................TTTAGAATTCCAACGCTTTAC............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGCA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAAGTCCTACGCTTCTCC........................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..................................................TTTAGAACCCCTACGCTTTACC........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................AAAAGCGTTTGGATTCTTGTAC................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................CATAGCGTTTGGATTCTGGAAC................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................CAAAGGGTTTGGATTCTGGAA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................CAAAGCGTTTGGAGTCTCGAAC................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................CAAAGCGTTTTGATTCTGGAACA.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TTTAGAATTCCTACACTTTACC........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................GCAAAGCGTTTGGATTCTGGAAC................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................CCAAAGCGTTTGGATTCTGGAAC................................................... 23 1 1 1.00 1 0 0 0 1 0 0

Anti-sense strand reads

TGATCTGACCGAATCGAAGCCATCTAGTATTTTTTTCCCATAACACCTCAAAATCTTAAGGATGCGAAATGGCAACGTATACTTTAATCCGTTTCGCAAACCTAAGACCTTGGGATACATAAGTAAAAATATTACACAAAAGTATTTATGTTGTGTTTTTCAA

************************************.((((((...((.((((((((((((..(((((((.((................)).)))))))..))))))))))))))...))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V055

head

 M044

female body
...........................................CACCACAAAATCCAAAGGATG................................................................................................... 21 3 2 0.50 1 1 0 0
....CTGAACGAATCGACACCATC........................................................................................................................................... 20 3 6 0.17 1 0 1 0
....CTGACCGAATCTACACCATC........................................................................................................................................... 20 3 11 0.09 1 0 1 0
..............................................................................................................TGGGATACATAAGTCTAG................................... 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13250:3108636-3108798 + dan_16 confident ACTAGACTGGCTTAGCTTCGGTAGATCATAAAAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAAT---------------------------------------------------GTGTTTTCAT------AAATACAACA--CAAAAAGTT
droBip1 scf7180000393580:5739-5902 - ACCAG------------------------A---AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATTTTTTTGTAAAAAGGGAGCCTAAACTAGAGGTCTGCAGGGAC----------------ACATTC-TTTACAC----AGGT---------AAAGAATA
droKik1 scf7180000302230:275915-276065 - ------------------------------------GGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGAGT------AAAGAAAATTTGAA------------AAGGAT---------GTAAACTATATTA-TTTATAC----AAATAT-ATA--CAAAAAAAT
droFic1 scf7180000454038:1133620-1133738 - ------------------------------------GGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTTTTT------------------------------------------------------A-TTAAC------AA-GAAAAAA--CAAAA---A
droEle1 scf7180000491044:230815-230939 + ------------------------------------GGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTTTTT------------------------------------------------------A-TTCAA------AAATAAAACAAGCTAAAAGTT
droRho1 scf7180000774874:205-358 - --------------------------------------------------TTTAATCTGTCTTAATTTTGTTATT-TA-TAAGATATTTAGCAAAGCTTTTGACGCAGTAAATATTCCTTTGCTC------TGTCAAAAGC--TAACGAGTTATAAGTTTGATAGTGCATATATAGGGTTCATAATAAAA-TTTCTAGAAACAA------GA--AGAAAAGCT
droBia1 scf7180000302126:1157221-1157310 + ------------------------------------GGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATT------------------------------------------------------------------------------------------------
droTak1 scf7180000415169:54717-54833 + ------------------------------------GGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTTTTA------------------------------------------------------A-TTAAC------AAT-AAAACA-------AGGT
droEug1 scf7180000409111:14094-14183 + ------------------------------------GGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTT------------------------------------------------------------------------------------------------
dm3 chrX:15859955-15860070 - dme-mir-927 Known_mirbase ------------------------------------GGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCATGTT------------------------------------------------------A-AAAAA------AAACAATACA----A-----A
droSim2 x:15031301-15031423 - dsi-mir-927 Known_mirbase ------------------------------------GGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCATGTT------------------------------------------------------A-TTAAC------AATGAAAACA--CTAATAGGT
droSec2 scaffold_37:439518-439640 - dse_27 confident ------------------------------------GGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCATGTT------------------------------------------------------A-TTAAC------AATGAAAACA--CTAATAGGT
droYak3 X:10049112-10049201 - dya_14 confident ------------------------------------GGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATT------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:11188758-11188892 + der_28 confident ATAAT------------------------AAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCATATT------------------------------------------------------A-TTAAC------AATGAAAACA--CTAATAGGT
dp5 Unknown_group_79:17447-17534 + dps-mir-927 Known_mirbase AA-------------------------------CGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATG--------------------------------------------------------------------------------------------------------
droPer2 scaffold_192:48574-48661 + dpe_29 confident AA-------------------------------CGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATG--------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004590:2521614-2521694 - dwi_12 confident -------------------------------------------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA--------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:3343535-3343647 - dvi-mir-927 Known_mirbase TCTAAAGGCTTTTAACTT----------TTAATAATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTC---------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:7790770-7790845 - dmo_54 confident ------------------------------------------------GTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATATATGGTCA--------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:10526925-10527009 + dgr_21 confident ---------------------------------------TATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCA--------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACTAGACTGGCTTAGCTTCGGTAGATCATAAAAAAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGCA-TATGAAATTAGGCAAAGCGTTTGGATTCTGGAACCCTATGTATTCATTTTTATAAT---------------------------------------------------GTGTTTTCAT------AAATACAACA--CAAAAAGTTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2214574.004574372189738140362091
...........................................................................................CAAAGCGTTTGGATTCTGGAAC..............................................................................................................2212484.002484119288124842601321
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................211854.00854275017232294
...........................................................................................CAAAGCGTTTGGATTCTGGAACA.............................................................................................................231389.003894202332328
...........................................................................................CAAAGCGTTTGGATTCTGGAA...............................................................................................................211199.0019911725026103
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22189.008927430010
...........................................................................................CAAAGCGTTTGGATTCTGGA................................................................................................................20187.008741021952
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................23183.00839910064
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21149.004928120009
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20148.004811103132
...........................................................................................CAAAGCGTTTGGATTCTGG.................................................................................................................19148.00481007337
...........................................................................................CAAAGCGTTTGGATTCTGGAACT.............................................................................................................23145.00451004337
...........................................................................................CAAAGCGTTTGGATTCTGGAAA..............................................................................................................22135.00352300327
............................................................................................AAAGCGTTTGGATTCTGGAAC..............................................................................................................21129.002912001214
..........................................................................................GCAAAGCGTTTGGATTCTGGAA...............................................................................................................22127.00273001023
........................................................................GTTGCA-TATGAAATTAGG....................................................................................................................................18125.00250010024
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................23125.00250232000
..................................................TTTAGAATTCCTACGCTTTACAA......................................................................................................................................................23124.00240231000
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................19116.00160301012
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................21114.00140120002
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................24113.00130001012
..........................................................................................GCAAAGCGTTTGGATTCTGGA................................................................................................................21112.0012100407
...........................................................................................CAAAGCGTTTGGATTCTGGAAT..............................................................................................................22111.0011000317
..........................................................................................GCAAAGCGTTTGGATTCTGG.................................................................................................................20110.0010000019
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................2218.008040004
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2017.007150010
...........................................................................................CAAAGCGTTTGGATTCTGGAAAA.............................................................................................................2316.006200112
...........................................................................................CAAAGCGTTTGGATTCTGGAACG.............................................................................................................2316.006001104
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2016.006230001
............................................................................................AAAGCGTTTGGATTCTGGAACA.............................................................................................................2215.005000005
..................................................TTTAGAATTCCTACGCTTTAAA.......................................................................................................................................................2215.005041000
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................2214.004310000
..................................................TTTAGAATTCCTACGCTTTACAAA.....................................................................................................................................................2414.004040000
..........................................................................................GCAAAGCGTTTGGATTCTGGAAA..............................................................................................................2314.004000004
..................................................TTTAGAATTCCTACGCTTTACCGTT....................................................................................................................................................2514.004000004
...........................................................................................CAAAGCGTTTGGATTCTGGAG...............................................................................................................2114.004010201
...........................................................................................CAAAGCGTTTGGATTCTGGT................................................................................................................2013.003000102
..................................................TTTAGAATTCCTACGCTTTACCAA.....................................................................................................................................................2413.003030000
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................1813.003001002
..................................................TTTAGAATTCCTACGCTTTAAAA......................................................................................................................................................2313.003030000
..............................AAAAAAGGGTATTGTGGAGT.............................................................................................................................................................................2013.003210000
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................2312.002010001
...........................................................................................CAAAGCGTTTGGATTCTGGAAG..............................................................................................................2212.002100001
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1812.002010100
....................................................TAGAATTCCTACGCTTTAC........................................................................................................................................................1912.002110000
..................................................TTTAGAATTCCTACGCTTAC.........................................................................................................................................................2012.002020000
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................2212.002200000
...........................................................................................CAAAGCGTTTGGATTCTGGTT...............................................................................................................2111.001000100
...........................................................................................CAAAGCGTTTGGATTCTGGC................................................................................................................2011.001000100
..............................................................................................AGCGTTTGGATTCTGGAAC..............................................................................................................1911.001100000
...........................................................................................CAAAGCGTTTGGATTCTGT.................................................................................................................1911.001000001
..........................................................................................GCAAAGCGTTTGGATTCTGGAG...............................................................................................................2211.001000001
..................................................TTTAGAATTCCTACGCTTTACCGTTGC..................................................................................................................................................2711.001000100
...................................................TTAGAATTCCTACGCTTTA.........................................................................................................................................................1911.001000001
...........................................................................................CAAAGCGTTTGGATTCTGGAACAA............................................................................................................2411.001000001
.............................AAAAAAAGGGTATTGTGGAGT.............................................................................................................................................................................2111.001000001
..........................................................................................GCAAAGCGTTTGGATTCTGGT................................................................................................................2111.001000001
............................................................................................AAAGCGTTTGGATTCTGGAACAA............................................................................................................2311.001100000
...........................................................................................CAAAGCGTTTGGATTCTGGAAGA.............................................................................................................2311.001000100
............................................................................................AAAGCGTTTGGATTCTGGA................................................................................................................1911.001000001
..........................................................................................GCAAAGCGTTTGGATTCTGGAAC..............................................................................................................2311.001000001
droBip1
ACCAG------------------------A---AAAGGGTATTGTGGAGTTTTAGAATTCCTACGCTTTACCGTTGC--TATGATATTTGGCAAAGCGTTTGGATTCTGGAACCCTACGTATTCATTTTTTTGTAAAAAGGGAGCCTAAACTAGAGGTCTGCAGGGAC----------------ACATTC-TTTACAC----AGGT---------AAAGAATASizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------GGGCGTTGTAGGGCTTTAGAATTCCTACGCTTTACCGTGGCA-TTCGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATGCGTCCGTGAGT------AAAGAAAATTTGAA------------AAGGAT---------GTAAACTATATTA-TTTATAC----AAATAT-ATA--CAAAAAAATSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------GGGTATTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCTTTTT------------------------------------------------------A-TTAAC------AA-GAAAAAA--CAAAA---ASizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------------GGATATTGTAGGGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACTAGTCCATTATCTTTTT------------------------------------------------------A-TTCAA------AAATAAAACAAGCTAAAAGTTSizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------TTTAATCTGTCTTAATTTTGTTATT-TA-TAAGATATTTAGCAAAGCTTTTGACGCAGTAAATATTCCTTTGCTC------TGTCAAAAGC--TAACGAGTTATAAGTTTGATAGTGCATATATAGGGTTCATAATAAAA-TTTCTAGAAACAA------GA--AGAAAAGCTSizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------GGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
------------------------------------GGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCTTTTA------------------------------------------------------A-TTAAC------AAT-AAAACA-------AGGTSizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------GGGTGTTGTAGAGTTTTAGAATTCCTACGCTTTACCGTAGCA-TACGAAAGTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCGTT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
------------------------------------GGTTGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATTATCATGTT------------------------------------------------------A-AAAAA------AAACAATACA----A-----ASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................22179279.00792790000274400023517103229713140000000073921613881492182550520000000000000019001000052200000000000000000211398580210170011373779489820745412015104696582623005021191914576661737214766731483064341529198742120413519151273000000000200000010000000010000000000327443530295317407972146199514821570233447473924838119419000055660000000000000000310000000000302205017118265318453523812004526028306187101125638210000001429001470000010100000301000000000516581674147817627162300004202745100000100002000015125224818111503981106100
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................21110556.001055600007000001100443020000000082251682232743500000000000000100000000000000000000000000064323500000000004516115160124279000122031020511150114132804135116417519309213000000000000000000000000000000005000329180103351668923030318523326613588722810000063400000000000000001000000000000003511133054126000032014697100161660160000032004900100001100000000000000001121251263390000010000603112000010000000000313800000090122400
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................2219236.009236000060010301003002000000000514915217201000000000000100000000044000000000000000000000019002300032725163136501572130001000051150235741011126116512410424200000000000010000000000000000000000536140202731538196111691616582972800000750000000000000000000000000000402220114102000001007848034110410032770140000011600380000001100000001000002102354310338285967811376164010016339191000002200013700044207379295245414337026100
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................2314783.00478300001030001010000011000000001519161451681200000000000000300000000010000000000000000000002400000001123302253533573090000000120100317633013082087196915912800000000000000000000000000000000000026434302241916234189211572123741354400000055200000000000000000000000000000001111104121001000025012113000635020000026007000000000000000000000000019251562021010000000220000020000000000115010340061012200
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................2314663.0046630000000000000010000000000000000000000000000000001000000000000000000000000000000020000000000300620000090000000000100011913010549030650000000000000000000000000000000000007491042001532025652312530000053000000000100000000000000000000000202000000047160081607288000182708000001270090000000011000003000000001327291203224512758287400007711574400000000000140002316946029513643067012400
...........................................................................................CAAAGCGTTTGGATTCTGAAACATC...........................................................................................................2511817.00181700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001270547000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................2111568.0015680000200000000000000000000000100000000000000000000000000021000000000000000000000000000000001600222000004200000100000000530100360401200000000000000000010100000000000000045370210061822111916320000030000000000000000000000000000010010000000000010001170310100003607000001800600010000000010010000000101338970780461392001003523637000020000000100184111951591003813600
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................2011149.001149000010000000000000000000000222372945110000000000000020000000000000000000000000000010600000000005003000001260000000100000014510001702333621000000000000000000000000000000000000391320435224235038312704177800000630000000000000000000000000000000000000020000000010001700019000000020040000000000000000000000000169245700000000000100000000000000000001400000050900
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................211697.00697000010000010000000000000000246443936110000000000000000000000000000000000000000000000100000000001002000100170000000000000113414045150132236000000000000000000000000000000000000255403655282539474571116410000022000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000010071100000000000000000000000000000100000000300
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................221625.0062500001010000001000000000000000000000000000000000001000000000000000000000000000000011000000000001110000001600000000000031107318071548017023220000000000000000000000000000000000001014010521122813116604053380000069000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000031230000000000000000000000000000000300000020200
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................221603.00603000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020010000000000000000001003010303074000000000000000000000000000000000000102009002151811222800000060000000000000000200000000000000000000000000000043002600023010000070030000001010000100000000001243216412361244000001601714002000000010000021234120703103500
........................................................................GTGGCA-TACGAAATTCGG....................................................................................................................................181586.005860000000000000000010000000000000000000000000000000000000012000000000000000000000000000000000401190310001900000000010010560300450602500000000000000000000000000000000000082201400022060802240000000000000000000000020000000000000000000000000000082601190014501000005008000000000000000000000000057302150190920001003034000000000000000008101000360300
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................221466.004660000160000001000001000000000000000000000000000000000000000000000000000000000000001000000000002402111100003600010000000000122120261212006319000000000000000000000000000000000000102502044529938013191410000010000000000000000000000000000000000000100000010000000210001200000002001000000000000000000000000020120100000000000000000000000000000200000000200
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................191400.0040000000000000000000000000000001789405000000000000000000000000000000000000000000000010000000000000100000070000000000000012081000009371015000000000000000000000000000000000000155009110588102128620800000230000000000000000000000000000000000000000000000000000000003010000000030000000000000000000000000343140000000000001000000000000000000200000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................221399.00399000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000010100001200000000000000000100040401300000000000000001000000000000000000018230900270111130370000003000000000000000020000000000000000000000000013000010010000320000000400000000000010000000000000002319181904570000009176000000000000000018321321030400
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................201337.003370000100000000000000000000000200000000000000000000000000000000000000000000000000100000000000200400000000000000000000011000002010210000000000000000000000000000000000009120110241634224000003000000000000000000000000000000000000001000000004202400002001000006003000000000000000000000000031171710041210000080440000010000000000499901430120800
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................231273.002730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000002604001101020400000010000000001000000000000000000001000000000000000010002000013000000060020000000000000000000000000271010230624200000516200000000000000003106220130100700
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................231260.0026000000000000000000000000000000183010000000000000010000000000000000000000000000000000000000000000000000300000000001000010100020307600000000000000000000000000000000000089015000619011400000000000000000000000000000000000000000001000000000052001110000201000002003000000000000000000000001048680365140000040130000000000000000136104110110400
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................191252.00252000000000000000000000000000030020000000000000000000000000000000000000000000000000000000000000020000000000000000000000300003100201000000000000000000000000000000000000613041042103646900000500000000000000000000000000000000001000000000000410014000150000000200300000000000000000000000001645110111000000504000000000000100002541910043020600
..........................................................................................GCAAAGCGTTTGGATTCTG..................................................................................................................191151.001510000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400320050021308000000000000000000000000000000000000000000000000000000000140000400000000001000000000000000000000000075514000000000000220000000000000000041100000180500
..........................................................................................GCAAAGCGTTTGGATTCTGAAACATC...........................................................................................................261146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010145000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................211126.0012600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000020001000000000000000000000000000000000000043020041000115000000400000000000000000000000000000000000000000000000000011000010000000300000000000000000000000000004116403000000003031000000101000100013231140080200
..................................................TTTAGAATTCCTACGCTTTACATC.....................................................................................................................................................241116.0011600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................231114.00114000020000101000000000000000000000000000000000000100000000000000000000000000000000000000000030010100001400000000000000110100020203500000000000000000000000000000000000043020010020411000000400000000000000000000000000000000000001000002623000000000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000
..................................................TTTAGAATTCCTACGCTTTACCTC.....................................................................................................................................................241108.0010800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................211104.00104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000011000000000000001002031306086000000000000000000000000000000000000312010017000143141000005000000000000000000000000000000000000000000010000000100000000000000001000000000000000000000000000130000000000001000000000000000000100000000000
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................201102.00102000000000010000000000000000305511010000000000000000000000000000000000000000000000000000000000000000000100000000000000210100000014000000000000000000000000000000000000021703332125601241000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000100
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................20196.009600000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000001000000200000000000000100000000310000000000000000000000000000000000000010011021021313000000100000000000000000000000000000000000000000000000000002000110000000000100000000000000000000000009105200100000002021000000000000000012120000050200
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................24194.0094000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000002001000000000000000000000000000000000000000000000840400140103013000000100000000000000000000000000000000000000000001230001001100000010000010000000000000000000000000000030403300000001001000000000000000001300000000200
...........................................................................................CAAAGCGTTTGGATTCTGAAACAT............................................................................................................24193.009300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000006820000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21186.00860000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000007100401110506140000001000000000000000000000000000000000000000000000000000030000100000001001000000000000000000000000033220610000000103200000000000000000900100020100
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................22182.008200000000000000000000000000021000000000000000000000000000000000000000000000000000000000000002012000000000000000000000310000000201120000000000000000000000000000000000002304022825112310000012000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100001030100
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................24182.0082000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000001000000004011000000000000000000000000000000000000050100010200020000001000000000000000000000000000000000000000000000000000200000100000000001000000000000000000000000010558000100000000000000000000000000010110000301200
..................................................TTTAGAATTCCTACGCTTTACCGATC...................................................................................................................................................26177.007700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18176.0076000000000000000000000000000001010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000020000011000002000000000000000000000000000000000000000000000000000000000230000100000001000000000000000000000000000055121600010000000013000000000000000001200000030000
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................22169.006900001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000110100000000000000000000000000000000000000025022905110111071000004000000000000000000000000000000000000000000000000100000001001000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................23168.0068000000000000000000000000000000000000000000000000000000006700000000000000000000000000000000000010000000000000000000001100000000000000000000000000000000000000000000000110000000112000000000000000000000000000000000000000000000000000000000000120000000000002000000000000000000000000000020120203200000701000000000000000000800001070500
...........................................................................................CAAAGCGTTTGGATTCTGAAAAA.............................................................................................................23167.00670000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000006401000203040200000010000000000000000000000000000000000000000000110000000000000000000020000000000100000000000000000831200010000001022000000000000000001501010000000
..................................................TTTAGAATTCCTACGCTTTAT........................................................................................................................................................21162.00620000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000100000000000000000000000111000101000330000000000000000000000000000000000000160011042903320000003000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................23161.0061000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000120001000000000000000000000000000007068000000000000000000000000000000000000770200100011020000003000000000000000000000000000000000000000000012000000000101200000000002000000000000000000000000000100000000000000000000000000000000000000000100
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................22154.00540000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001302001401010200000010000000000000000000000000000000000000000000210000001000000000000010000000000000000000000000000212401000000002020000000000000010011211000000100
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................20153.00530000000000000000010000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000020000000000000000000000000000000000000230122370900100000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................18146.0046000000000000000010000000000004010000000000000000000000000000000000000000000000000000000000000010000001000000000000001200000000210000000000000000000000000000000000000000210114015407000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAACA.............................................................................................................22146.00460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000002000000000000000000000000000000000000000003200000200010100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000212701010000003020000000000000000001200000010000
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................23146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000014000000000000000100000006000000000000000000000000000000000000000450211110201330000001000000000000000000000000000000000000100000032000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
........................................................................GTGGCA-TACGAAATTCGGT...................................................................................................................................19142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000020000000000000000000000000020000100000000000000000000000000000000000000000101201520000000100000000000000000000410100040300
..................................................TTTAGAATTCCTACGCTTTATT.......................................................................................................................................................22140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000170010000000100000000000000000000000000000000000000000000000000000000000000120100023301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................23137.00370000300000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTAC.........................................................................................................................................................20134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000160200063702120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000010000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000022420000000000000000000000000000000500001020100
..........................................................................................GCAAAGCGTTTGGATTCTGAAACA.............................................................................................................24122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000012130220000000000000000000000000000301000010000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................23122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000110100000100000000002000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000001100010000000000100000000000000000600000000100
...........................................................................................CAAAGCGTTTGGATTCTGAAAAT.............................................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200100000050000000000000000000000000000000000000000000000000042000000000000000000000000000000000000000000000000000100000000000001000000000000000000400000000000
droSim2
------------------------------------GGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCATGTT------------------------------------------------------A-TTAAC------AATGAAAACA--CTAATAGGTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................22159696.0059696552644391953342814801813143165115201023
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................2217754.0077546461110107990453181702000010
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................2115516.0055165025104358009101070100010
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................2114354.004354415220463111221460601000
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................2211771.00177113854034300100000200000
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................2311655.00165512651372211273102411100000
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................2311066.0010669452279100014301100000
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................221812.00812775112500000100000000
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................201575.00575520929001210220000000
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................181458.00458600001338500000000000
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................201294.0029486002419900201000000
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................211260.0026023651700100100000000
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................191250.0025015110049400000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................231230.0023020631700000120100000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................231187.0018713115110300000000000
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................191156.0015614203011000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................23184.00843204004800000000000
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................23177.0077770000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAA.............................................................................................................23174.0074701300000000000000
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21169.00692710113900000000000
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................20151.0051490000100100000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................24135.0035272410000100000000
...........................................................................................CAAAGCGTTTGGATTCTT..................................................................................................................18131.0031310000000000000000
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................22128.0028220100500000000000
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................22127.0027222100000020000000
........................................................................GTGGCA-TACGAAATTCGG....................................................................................................................................18127.0027406000000001700000
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18125.0025900001400101000000
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................23122.0022200200000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................23119.0019190000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGG.................................................................................................................19119.0019190000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................23118.0018150300000000000000
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22116.0016150100000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAG...............................................................................................................21115.0015140100000000000000
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21114.0014140000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAT...............................................................................................................21113.0013130000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................22113.0013130000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTG..................................................................................................................19111.0011100000100000000000
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................20110.001091000000000000000
..............................................................................................AGCGTTTGGATTCTGAAAC..............................................................................................................19110.0010100000000000000000
..............................................................................................AGCGTTTGGATTCTGAAA...............................................................................................................18110.0010100000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAT................................................................................................................2019.00990000000000000000
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................2119.00990000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2018.00862000000000000000
...............................................................................................GCGTTTGGATTCTGAAAC..............................................................................................................1818.00880000000000000000
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2317.00760100000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGG.................................................................................................................2017.00770000000000000000
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2016.00631000200000000000
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................2216.00660000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAAA............................................................................................................2416.00660000000000000000
...................................................TTAGAATTCCTACGCTTTA.........................................................................................................................................................1916.00600000600000000000
..........................................................................................GCAAAGCGTTTGGATTCT...................................................................................................................1815.00540000100000000000
..................................................TTTAGAATTCCTACGCTTTACCGA.....................................................................................................................................................2415.00550000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTT..................................................................................................................1915.00550000000000000000
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................2414.00430000100000000000
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2014.00420000200000000000
..................................................TTTAGAATTCCTACGCTTC..........................................................................................................................................................1914.00440000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGT.................................................................................................................1914.00440000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAG................................................................................................................2013.00330000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAACA.............................................................................................................2213.00330000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAT..............................................................................................................2313.00330000000000000000
.............................................................................................AAGCGTTTGGATTCTGAAA...............................................................................................................1913.00320100000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACTT............................................................................................................2413.00330000000000000000
..................................................TTTAGAATTCCTACGCTTTAT........................................................................................................................................................2112.00220000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAG..............................................................................................................2212.00220000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACCC............................................................................................................2412.00200000200000000000
.......................................................................................TCGGCAAAGCGTTTGGATTCTGAAA...............................................................................................................2512.00220000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACAT............................................................................................................2412.00220000000000000000
..................................................TTTAGAATTCCTACGCTTTACAA......................................................................................................................................................2312.00210000010000000000
........................................................................GTGGCA-TACGAAATTCGGA...................................................................................................................................1912.00200100000000100000
............................................................................................AAAGCGTTTGGATTCTGAAAA..............................................................................................................2112.00220000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAACT.............................................................................................................2212.00220000000000000000
.....................................................AGAATTCCTACGCTTTACC.......................................................................................................................................................1912.00200000200000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAT.............................................................................................................2312.00210100000000000000
.................................................................................................GTTTGGATTCTGAAACA.............................................................................................................1712.00200000000002000000
..................................................TTTAGAATTCCTACGCTTA..........................................................................................................................................................1912.00220000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAACC.............................................................................................................2212.00200000200000000000
...........................................................................................CAAAGCGTTTGGATTCTGAC................................................................................................................2012.00220000000000000000
...............................................................................................GCGTTTGGATTCTGAAAA..............................................................................................................1811.00110000000000000000
.............................................................................................AAGCGTTTGGATTCTGAAAAA.............................................................................................................2111.00110000000000000000
......................................................................................TTCGGCAAAGCGTTTGGATTCT...................................................................................................................2211.00101000000000000000
.............................................................................................AAGCGTTTGGATTCTGAA................................................................................................................1811.00110000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAT...............................................................................................................2211.00110000000000000000
..................................................TTTAGAATTCCTACGCT............................................................................................................................................................1711.00100000000001000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAG...............................................................................................................2211.00110000000000000000
..................................................TTTAGAATTCCTACGCTTTG.........................................................................................................................................................2011.00110000000000000000
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2311.00110000000000000000
........................................................................................CGGCAAAGCGTTTGGATTCTGT.................................................................................................................2211.00110000000000000000
....................................................TAGAATTCCTACGCTTTAC........................................................................................................................................................1911.00110000000000000000
droSec2
------------------------------------GGATGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATCGATCCATTATCATGTT------------------------------------------------------A-TTAAC------AATGAAAACA--CTAATAGGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2211367.0013672712684986
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................221750.007502956229436
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................231368.0036832371271
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................211175.001751511158
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................211150.0015032017110
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................231147.0014734013100
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19154.005434047
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................20139.003901335
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................22138.0038241121
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................23133.003311238
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................22129.002911522
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................23123.002300419
........................................................................GTCGCA-TACGAAATTCGG....................................................................................................................................18118.001800108
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20116.001611014
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21116.001614002
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................20114.001403110
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21114.00144046
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18113.001300013
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................21112.001201110
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................24112.001200012
...........................................................................................CAAAGCGTTTGGATTCTGT.................................................................................................................19110.00100109
...........................................................................................CAAAGCGTTTGGATTCTGAAAAA.............................................................................................................2318.0080107
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2014.0043001
..........................................................................................GCAAAGCGTTTGGATTCTG..................................................................................................................1914.0040004
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................2314.0040112
............................................................................................AAAGCGTTTGGATTCTGAAACA.............................................................................................................2213.0031011
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................2412.0020002
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................2312.0020011
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................2212.0020020
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................1912.0020002
..........................................................................................GCAAAGCGTTTGGATTCTGAAT...............................................................................................................2212.0020011
............................................................................................AAAGCGTTTGGATTCTGAAAAA.............................................................................................................2211.0010001
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2311.0011000
..........................................................................................GCAAAGCGTTTGGATTCTGAAACA.............................................................................................................2411.0010001
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2311.0011000
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2011.0010001
................................................................................................CGTTTGGATTCTGAAACA.............................................................................................................1811.0010001
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................2211.0011000
..................................................TTTAGAATTCCTACGCTTTACCGTT....................................................................................................................................................2511.0010001
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................2311.0010001
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1811.0010001
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................2211.0010001
...........................................................................................CAAAGCGTTTGGATTCTGAAG...............................................................................................................2111.0010001
..........................................................................................GCAAAGCGTTTGGATTCTGAAACT.............................................................................................................2411.0010001
........................................................................GTCGCA-TACGAAATTCGT....................................................................................................................................1811.0010001
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................2211.0010001
...........................................................................................CAAAGCGTTTGGATTCTGTT................................................................................................................2030.3310001
droYak3
------------------------------------GGGCGCTGTAGAGTTTTAGAATTCCTACGCTTTACCGTCGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTACCGATCCATT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................22117059.001705911576305471274109266160100
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................2212983.00298317123810051336136430000
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................2112019.002019189742021567130100
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................2111189.001189101834782144210000
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................221887.0088786401501430000
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................231637.0063737324215116800000
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................231377.00377342010031750000
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................231368.0036826821261146230000
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................201256.0025622716061420000
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................221224.002242091503420000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................231119.001193807901100000
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................191116.001161011002930000
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................211116.001161131001100000
........................................................................GTCGCA-TACGAAATTCGG....................................................................................................................................18190.0090780821100000
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21144.00447221220100000
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................23127.0027250100100000
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................22126.0026144700100000
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................20121.0021181000200000
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21119.001994230010000
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................19118.0018180000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................23117.0017140100200000
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22117.0017201401000000
...........................................................................................CAAAGCGTTTGGATTCTGG.................................................................................................................19116.0016160000000000
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20116.0016102102100000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAA.............................................................................................................23115.0015140000100000
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................20114.0014130000100000
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18112.001240003500000
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................2419.00980000100000
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................2219.00940400100000
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2319.00970200000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................2318.00880000000000
...........................................................................................CAAAGCGTTTGGATTCTT..................................................................................................................1817.00760000100000
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................2417.00710102300000
...........................................................................................CAAAGCGTTTGGATTCTGAAT...............................................................................................................2116.00650000100000
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2016.00610500000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................2216.00660000000000
..........................................................................................GCAAAGCGTTTGGATTCTGG.................................................................................................................2015.00550000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAG..............................................................................................................2215.00540001000000
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1815.00550000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAG...............................................................................................................2115.00550000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAC...............................................................................................................2114.00420000200000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAAA............................................................................................................2414.00440000000000
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................2314.00430100000000
................................................GTTTTAGAATTCCTACGCTTT..........................................................................................................................................................2114.00440000000000
...........................................................................................CAAAGCGTTTGGATTCTGAC................................................................................................................2014.00440000000000
...........................................................................................CAAAGCGTTTGGATTCTGAT................................................................................................................2014.00430000100000
..................................................TTTAGAATTCCTACGCTTTG.........................................................................................................................................................2013.00320000100000
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2013.00311000100000
...........................................................................................CAAAGCGTTTGGATTCTGAAACTT............................................................................................................2413.00330000000000
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2013.00312000000000
.............................................................................................AAGCGTTTGGATTCTGAAACA.............................................................................................................2113.00330000000000
..........................................................................................GCAAAGCGTTTGGATTCTG..................................................................................................................1913.00310000200000
..........................................................................................GCAAAGCGTTTGGATTCTGAAG...............................................................................................................2213.00330000000000
................................................GTTTTAGAATTCCTACGCTTTA.........................................................................................................................................................2213.00330000000000
..............................................................................................AGCGTTTGGATTCTGAAACCC............................................................................................................2113.00330000000000
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................2112.00220000000000
......................................................................................TTCGGCAAAGCGTTTGGATTCTGAAAC..............................................................................................................2712.00220000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAT...............................................................................................................2212.00220000000000
.....................................................................................ATTCGGCAAAGCGTTTGGATTCTGAAAC..............................................................................................................2812.00220000000000
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................2212.00201100000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAT.............................................................................................................2312.00220000000000
....................................................................................AATTCGGCAAAGCGTTTGGATTCTGAAA...............................................................................................................2812.00220000000000
.............................................................................................AAGCGTTTGGATTCTGAAA...............................................................................................................1912.00220000000000
..............................................................................................AGCGTTTGGATTCTGAAA...............................................................................................................1812.00220000000000
..................................................TTTAGAATTCCTACGCTC...........................................................................................................................................................1811.00110000000000
.............................................................................................AAGCGTTTGGATTCTGAAAAA.............................................................................................................2111.00110000000000
..............................................................................................AGCGTTTGGATTCTGAAAC..............................................................................................................1911.00110000000000
..............................................................................................AGCGTTTGGATTCTGAAACC.............................................................................................................2011.00110000000000
.....................................................AGAATTCCTACGCTTTACC.......................................................................................................................................................1911.00100100000000
..........................................................................................GCAAAGCGTTTGGATTCTGAC................................................................................................................2111.00110000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAC...............................................................................................................2211.00110000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAG................................................................................................................2111.00110000000000
............................................................................................AAAGCGTTTGGATTCTGAA................................................................................................................1911.00110000000000
..................................................TTTAGAATTCCTACGCTTTACCGTCG...................................................................................................................................................2611.00100001000000
droEre2
ATAAT------------------------AAATTGTGGGTGCTGCAGAGTTTTAGAATTCCTACGCTTTACCGTGGCA-TACGAAATTCGGCAAAGCGTTTGGATTCTGAAACTCTACCGATCCATTATCATATT------------------------------------------------------A-TTAAC------AATGAAAACA--CTAATAGGTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2215174.0051746191261167986029690
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................221931.00931441588031395790
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................231791.00791631611566990
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................211562.00562463435734370
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................231256.00256321721141900
........................................................................GTGGCA-TACGAAATTCGG....................................................................................................................................181233.002331061012150
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................211171.001711174171410
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................22185.008502342740
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................20180.008020103740
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................23171.007101001690
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18156.005610100540
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................22156.005610503470
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21145.004537500030
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19144.004420201390
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................23144.0044011741210
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20140.004031200340
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22128.002804010230
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................23117.001700000170
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................24116.001610103110
...........................................................................................CAAAGCGTTTGGATTCTGAAAAA.............................................................................................................23115.001520000130
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21115.00154010190
...........................................................................................CAAAGCGTTTGGATTCTGT.................................................................................................................19114.001400100130
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................23112.001200101100
........................................................................GTGGCA-TACGAAATTCGGT...................................................................................................................................19111.00110002090
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................21110.00101000180
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................2018.0080000170
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2018.0082300030
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................1918.0080000080
............................................................................................AAAGCGTTTGGATTCTGAAACA.............................................................................................................2217.0070000160
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................2315.0052000030
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................2215.0054000010
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................2415.0050000140
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................2214.0040000040
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2014.0043000010
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................2113.0030001020
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1813.0030000030
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................2013.0030001020
..........................................................................................GCAAAGCGTTTGGATTCTGAAACA.............................................................................................................2413.0030000120
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................2312.0020100010
...........................................................................................CAAAGCGTTTGGATTCTGAAAG..............................................................................................................2212.0020010010
...........................................................................................CAAAGCGTTTGGATTCTGAAT...............................................................................................................2112.0020000020
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2012.0020000110
...........................................................................................CAAAGCGTTTGGATTCTGAAG...............................................................................................................2112.0020000110
...........................................................................................CAAAGCGTTTGGATTCTGAAAACA............................................................................................................2411.0010000010
............................................................................................AAAGCGTTTGGATTCTGA.................................................................................................................1811.0010000010
..........................................................................................GCAAAGCGTTTGGATTCTGAAG...............................................................................................................2211.0010000010
...........................................................................................CAAAGCGTTTGGATTCTGTT................................................................................................................2011.0010000010
...........................................................................................CAAAGCGTTTGGATTCTGAAACAT............................................................................................................2411.0010000010
............................................................................................AAAGCGTTTGGATTCTGAAACT.............................................................................................................2211.0010000010
...........................................................................................CAAAGCGTTTGGATTCTGAAATA.............................................................................................................2311.0010000010
................................TTGTGGGTGCTGCAGAGT.............................................................................................................................................................................1811.0010000010
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2311.0010000010
............................................................................................AAAGCGTTTGGATTCTGAA................................................................................................................1911.0010000010
........................................................................GTGGCA-TACGAAATTCGT....................................................................................................................................1811.0010000010
................................................................................................CGTTTGGATTCTGAAACA.............................................................................................................1821.0020000020
...........................................................................................CAAAGCGTTTGGATTCTT..................................................................................................................1811.0010000010
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................2311.0010000100
..................................................TTTAGAATTCCTACGCTTAC.........................................................................................................................................................2011.0010000010
...................................................TTAGAATTCCTACGCTTTA.........................................................................................................................................................1911.0010000010
..........................................................................................GCAAAGCGTTTGGATTCTGAAAG..............................................................................................................2311.0010000010
..........................................................................................GCAAAGCGTTTGGATTCTGAAACAA............................................................................................................2511.0010000010
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................2211.0011000000
dp5
AA-------------------------------CGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................22139546.0039546272532482329337228299211011711197
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................2218999.0089991867088962311232348417305869
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................2114676.004676459154529683616132557142
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................2111357.0013572651891183140311070
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................231659.00659215091343215022817
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................211449.00449021914204010902
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................231388.00388015413639071276
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................231263.002630394315151381291
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................221151.0015102630783101210
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................231129.00129013272546019134
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................201127.001270279682100641
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................221115.001153240001191373
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................20192.0092063124010210
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................20175.0075050426010147
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21175.0075045211110024
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................22171.0071078200030123
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................23161.00610176270001010
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................20154.005408343000000
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................19149.004905328260401
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................23148.004803442326024
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................22138.003802711000801
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................24128.002801217160001
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................22122.002202212100311
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................23118.001801312000200
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19116.00160300220207
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................21116.00160914010010
....................................................TAGAATTCCTACGCTTTACCG......................................................................................................................................................21114.001401211000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAA.............................................................................................................23112.00120400000800
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................22110.00100106000021
........................................................................GTTGCAAAACGAAATTCGG....................................................................................................................................19110.00100320110003
..................................................TTTAGAATTCCTACGCTTTT.........................................................................................................................................................2019.0090008010000
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2319.0090333000000
...................................................TTAGAATTCCTACGCTTTA.........................................................................................................................................................1918.0080413000000
....................................................TAGAATTCCTACGCTTTAC........................................................................................................................................................1918.0080601010000
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2018.0080300000005
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................2018.0080700000100
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2318.0080503000000
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................2118.0080100110131
...................................................TTAGAATTCCTACGCTTTACCA......................................................................................................................................................2215.0050311000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................2415.0050300000200
............................................................................................AAAGCGTTTGGATTCTGAAACA.............................................................................................................2215.0050500000000
..................................................TTTAGAATTCCTACGCTTTACCGC.....................................................................................................................................................2415.0050005000000
..................................................TTTAGAATTCCTACGCTTTACAA......................................................................................................................................................2315.0050410000000
......................................................GAATTCCTACGCTTTACC.......................................................................................................................................................1815.0050500000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACCA............................................................................................................2415.0050201010100
..................................................TTTAGAATTCCTACGCTTTACCGTTGC..................................................................................................................................................2714.0040201000010
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................2214.0040100110001
..................................................TTTAGAATTCCTACGCTTTACCGTAA...................................................................................................................................................2614.0040310000000
..................................................TTTAGAATTCCTACGCTTC..........................................................................................................................................................1914.0040004000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAACC.............................................................................................................2414.0040000000400
...........................................................................................CAAAGCGTTTGGATTCTGAAACAAA...........................................................................................................2514.0040400000000
..................................................TTTAGAATTCCTACGCTTTACCGA.....................................................................................................................................................2413.0030200100000
AA-------------------------------CGAGGATATTGTAGTGT.............................................................................................................................................................................1913.0030110010000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAAA............................................................................................................2413.0030200000100
...................................................TTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................2313.0030201000000
..................................................TTTAGAATTCCTACGCTTTACCAAA....................................................................................................................................................2513.0030100000200
...........................................................................................CAAAGCGTTTGGATTCTGAAACGAG...........................................................................................................2513.0030000000300
.....................................................AGAATTCCTACGCTTTACC.......................................................................................................................................................1913.0030201000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACCTCT..........................................................................................................2613.0030000000300
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1813.0030002000100
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................2313.0030100000020
.............................................................................................AAGCGTTTGGATTCTGAAA...............................................................................................................1913.0030300000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACCC............................................................................................................2412.0020000000020
....................................................TAGAATTCCTACGCTTTACCGA.....................................................................................................................................................2212.0020200000000
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................1812.0020200000000
droPer2
AA-------------------------------CGAGGATATTGTAGTGTTTTAGAATTCCTACGCTTTACCGTTGCAAAACGAAATTCGGCAAAGCGTTTGGATTCTGAAACCCTATG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2212192.0021927185165237352310
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................2211937.0019376681112542662978
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................211619.00619121212431101294
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................211425.004251972063713629
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................231125.001252541176711
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................231100.00100314138161
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................23172.007238417193
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................20160.006094013331
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19156.005695011301
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................23152.005223306182
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................23144.004415411383
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21137.00370340120
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................22136.00362500650
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................24125.00250402181
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22122.00221201000
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................20119.00190190000
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20119.0019071380
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................23117.00170130130
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21117.0017080450
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18116.00160104110
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................19111.0011110540
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................2117.007400111
..................................................TTTAGAATTCCTACGCTTTACCAA.....................................................................................................................................................2416.006060000
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................2116.006131100
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................2216.006400110
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2015.005010040
...........................................................................................CAAAGCGTTTGGATTCTGAAACAA............................................................................................................2415.005050000
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................2315.005020120
..................................................TTTAGAATTCCTACGCTTTACAA......................................................................................................................................................2315.005050000
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................2314.004110020
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................2214.004040000
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................2214.004010120
........................................................................GTTGCAAAACGAAATTCGG....................................................................................................................................1914.004040000
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................2013.003110100
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1813.003300000
...........................................................................................CAAAGCGTTTGGATTCTGAAAAAA............................................................................................................2413.003300000
...........................................................................................CAAAGCGTTTGGATTCTGAAACCA............................................................................................................2413.003020010
............................................................................................AAAGCGTTTGGATTCTGA.................................................................................................................1812.002020000
..................................................TTTAGAATTCCTACGCTTTT.........................................................................................................................................................2012.002010100
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2312.002100010
.A-------------------------------CGAGGATATTGTAGTGT.............................................................................................................................................................................1812.002000020
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2012.002010010
...........................................................................................CAAAGCGTTTGGATTCTGG.................................................................................................................1912.002200000
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................2012.002000011
...........................................................................................CAAAGCGTTTGGATTCTGAT................................................................................................................2012.002000020
..........................................................................................GCAAAGCGTTTGGATTCTGTT................................................................................................................2111.001100000
..................................................TTTAGAATTCCTACGCTTTACCTGA....................................................................................................................................................2511.001000010
...................................................TTAGAATTCCTACGCTTTACA.......................................................................................................................................................2111.001010000
...........................................................................................CAAAGCGTTTGGATTCTGATC...............................................................................................................2111.001000010
..................................................TTTAGAATTCCTACGCTTTAT........................................................................................................................................................2111.001000010
..................................................TTTAGAATTCCTACGCTTTACCGTAAA..................................................................................................................................................2711.001010000
...........................................................................................CAAAGCGTTTGGATTCTGT.................................................................................................................1911.001000010
...................................................................................AAATTCGGCAAAGCGTTTGGATTCT...................................................................................................................2511.001000100
............................................................................................AAAGCGTTTGGATTCTGAAACC.............................................................................................................2211.001000010
..................................................TTTAGAATTCCTACGCTTTACAT......................................................................................................................................................2311.001010000
...........................................................................................CAAAGCGTTTGGATTCTGAAC...............................................................................................................2111.001000010
......................................................GAATTCCTACGCTTTACC.......................................................................................................................................................1811.001000100
..................................................TTTAGAATTCCTACGCTTTACCGAAA...................................................................................................................................................2611.001010000
..................................................TTTAGAATTCCTACGCTTAC.........................................................................................................................................................2011.001010000
...................................................TTAGAATTCCTACGCTTTACCAAA....................................................................................................................................................2411.001010000
..................................................TTTAGAATTCCTACGCTTTACCAAA....................................................................................................................................................2511.001010000
..............................................................................................AGCGTTTGGATTCTGAAAC..............................................................................................................1911.001100000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................2311.001100000
droWil2
-------------------------------------------GTAGCGTTTTAGAATTCCTACGCTTTACCGTCGCC-TACGAAACTCGGCAAAGCGTTTGGATTCTGAAACATTATCTCTGCA--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................22161392.006139252811702217397119
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................2217241.00724158937356371848
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................2116195.006195544482124644
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................2113375.0033753209111330112
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................2313240.00324020196731191032
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................221698.0069867500320
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................231572.0057251822545
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................231565.00565441425068
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................201333.0033327914742
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................231312.003123041016
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................231228.0022819140429
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................231172.0017276162069
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................231115.001151054006
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................211113.0011335610215
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20195.00956050327
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19192.00926812318
.................................................TTTTAGAATTCCTACGCTTTAC........................................................................................................................................................22190.0090812043
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................21181.0081771012
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................20180.0080751202
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................24176.0076510367
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................21150.00502860610
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................19148.0048451002
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22140.00401600024
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................22137.0037281017
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................23134.0034301102
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................18130.0030281010
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................22127.00271600011
........................................................................GTCGCC-TACGAAACTCGG....................................................................................................................................18125.0025900124
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................23122.0022201001
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................23118.001890018
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................22116.0016410002
..............................................................................................AGCGTTTGGATTCTGAAAC..............................................................................................................19115.0015102003
...........................................................................................CAAAGCGTTTGGATTCTGAT................................................................................................................20112.0012120000
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................20111.001123006
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................18111.001180012
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................21111.001170004
.................................................TTTTAGAATTCCTACGCTTT..........................................................................................................................................................20110.001071002
...........................................................................................CAAAGCGTTTGGATTCTGG.................................................................................................................19110.0010100000
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2019.00927000
..........................................................................................GCAAAGCGTTTGGATTCTGAAAA..............................................................................................................2317.00740012
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................2017.00750002
..........................................................................................GCAAAGCGTTTGGATTCTGAAACT.............................................................................................................2416.00640002
.................................................TTTTAGAATTCCTACGCTT...........................................................................................................................................................1916.00650001
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2016.00650001
...........................................................................................CAAAGCGTTTGGATTCTGAAC...............................................................................................................2115.00540010
..................................................TTTAGAATTCCTACGCTTTACG.......................................................................................................................................................2215.00550000
...............................................................................................GCGTTTGGATTCTGAAAC..............................................................................................................1814.00440000
...........................................................................................CAAAGCGTTTGGATTCTGAAT...............................................................................................................2114.00440000
.....................................................AGAATTCCTACGCTTTACC.......................................................................................................................................................1914.00411002
..........................................................................................GCAAAGCGTTTGGATTCTGAAACA.............................................................................................................2413.00310002
.................................................TTTTAGAATTCCTACGCTTTA.........................................................................................................................................................2113.00330000
...........................................................................................CAAAGCGTTTGGATTCTGAAG...............................................................................................................2113.00330000
..................................................TTTAGAATTCCTACGCTTTACCGTT....................................................................................................................................................2513.00310002
...........................................................................................CAAAGCGTTTGGATTCTGAAAG..............................................................................................................2213.00330000
...........................................................................................CAAAGCGTTTGGATTCTT..................................................................................................................1822.50550000
..................................................TTTAGAATTCCTACGCTTTACCGTCG...................................................................................................................................................2612.00200002
..................................................TTTAGAATTCCTACGCTTTACCGA.....................................................................................................................................................2412.00210001
..................................................TTTAGAATTCCTACGCTTAC.........................................................................................................................................................2012.00210001
............................................................................................AAAGCGTTTGGATTCTGAAACC.............................................................................................................2212.00210100
............................................................................................AAAGCGTTTGGATTCTGAAACT.............................................................................................................2212.00210010
..........................................................................................GCAAAGCGTTTGGATTCTG..................................................................................................................1912.00200002
...........................................................................................CAAAGCGTTTGGATTCTGAAACAT............................................................................................................2412.00220000
..........................................................................................GCAAAGCGTTTGGATTCTGAAACC.............................................................................................................2412.00220000
..................................................TTTAGAATTCCTACGCTTTT.........................................................................................................................................................2012.00220000
..................................................TTTAGAATTCCTACGCTTTACCGG.....................................................................................................................................................2412.00201001
..................................................TTTAGAATTCCTACGCTTTACCGC.....................................................................................................................................................2412.00220000
............................................................................................AAAGCGTTTGGATTCTGAAACA.............................................................................................................2212.00210010
..........................................................................................GCAAAGCGTTTGGATTCTGAAG...............................................................................................................2212.00220000
............................................................................................AAAGCGTTTGGATTCTGA.................................................................................................................1812.00220000
..............................................................................................AGCGTTTGGATTCTGAAACC.............................................................................................................2012.00220000
...........................................................................................CAAAGCGTTTGGATTCTGAATT..............................................................................................................2211.00110000
droVir3
TCTAAAGGCTTTTAACTT----------TTAATAATGTCCATCGTATCGTTTTAGAATTCCTACGCTTTACCGTCGTG-TCCGAAATTTGGCAAAGCGTTTGGATTCTGAAACGATATATGGTC---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2219222.0092227343352695720000000000420192108241287167045324600020741401000100712181100170122132020466448112874000272415491685455641117124
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................2111314.0013145464432110000000007649245377430864400002402200001000260000000000000231171319110044240500114931826
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................221676.006768423137000000000009327104111140000020000000000000111000000000001546626500010042000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................211577.00577184703101000000006905430810000002100000000000000000000000001122018300000104003000001
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................201104.001040182200000000007349950155000002000000000000000000000000000010009100000001000011000
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................20169.006914920000000000030102200000000100000000000000000000000000000008000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................23167.006705910000000000012001000100000000000000000000000000000000000002000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................23155.00553930000000000090123307200000000000000000000000000000000005203000001000000000101
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................19147.004713110000000000000200103000000000100000000000000000000000004002000000000000000001
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21138.003800293000000000011011000100000000000000000000000000000000000001000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................23132.003202600000000000020100001000000000000000000000000000000000001000000000000000000010
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19124.002401800000000000020000000100000000000000000000000000000000000002100000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................23118.001801401000000000000000000100000000000000000000000000000000000101000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................23117.00170100000000000000113100000000000000000000000000000000000000002000010300001001002
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................23116.00161800000000000010111000000000000000000000000000000000000000002100000000000000000
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22114.00140420000000000000010001000000000000000000000000000000000001000000001000000001021
...........................................................................................CAAAGCGTTTGGATTCTT..................................................................................................................18114.001401400000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................18112.001201100000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2318.0080311000000000000000000000000000000000000000000000000000000100000000000002000000
..........................................................................................GCAAAGCGTTTGGATTCTGAA................................................................................................................2117.0071500000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2016.0060122000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................2216.0061400000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................2115.0050401000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................GTCGTG-TCCGAAATTTGG....................................................................................................................................1815.0050202000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2015.0050050000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................1815.0050110000000000000000100000000000000000000000000000000000000001000000000000000001
..................................................TTTAGAATTCCTACGCTTTAA........................................................................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000000000000000000000010
...........................................................................................CAAAGCGTTTGGATTCTGG.................................................................................................................1913.0031200000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................2213.0030100000000000000001000000000000000000000000000000000000000010000000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................2213.0030100000000000000010000000000000000000000000000000000000000000000000001000000000
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................2013.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTAGAATTCCTACGCTTTACCG......................................................................................................................................................2213.0030000000000000010000000000000000000000000000000000000000000110000000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAA...............................................................................................................2012.0021000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAT................................................................................................................2012.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAC................................................................................................................2012.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGC.............................................................................................................................................................1612.0020000000000000000000000000000000000000000000000000000000002000000000000000000000
.....................................................AGAATTCCTACGCTTTACC.......................................................................................................................................................1912.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTT.........................................................................................................................................................2012.0020100000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2312.0020000000000000000000000000000000000000000000001000000000000100000000000000000000
.................................................TTTTAGAATTCCTACGCTTTAC........................................................................................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTA..........................................................................................................................................................1911.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAG................................................................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAAAGCGTTTGGATTCTGAAG...............................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAACTT............................................................................................................2411.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCAA.....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................TTTAGAATTCCTACGCTTTACCGTAA...................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
...........................................................................................CAAAGCGTTTGGATTCTGAAACG.............................................................................................................2311.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTAG........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................AAAGCGTTTGGATTCTGAAACT.............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................TTTAGAATTCCTACGCTTTAAA.......................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................TTTAGAATTCCTACGCTTTACCGTT....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................TTAGAATTCCTACGCTTTACCT......................................................................................................................................................2211.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...........................................................................................CAAAGCGTTTGGATTCTGAAC...............................................................................................................2111.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTTGGCAAAGCGTTTGGATTC....................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AAAGCGTTTGGATTCTGAA................................................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGCTTTG.........................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTAGAATTCCTACGT.............................................................................................................................................................1620.5010000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................TTTAGAATTCCTACGCTTC..........................................................................................................................................................1920.5010100000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------------------------------GTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGCAATTTGGCAAAGCGTTTGGATTCTGAAACAATATATGGTCA--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2214709.004709109452219392289656
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................221752.007526184810548248
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................211321.0032187328411575
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................211143.00143111000311
...........................................................................................CAAAGCGTTTGGATTCTGAAA...............................................................................................................21174.007462124086
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................20131.00318051251
...........................................................................................CAAAGCGTTTGGATTCTGAAACA.............................................................................................................23115.0015101607
...........................................................................................CAAAGCGTTTGGATTCTGA.................................................................................................................19114.0014202325
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................23114.0014600080
...........................................................................................CAAAGCGTTTGGATTCTGAA................................................................................................................20112.0012301215
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................20112.00121000020
..................................................TTTAGAATTCCTACGCTTTACA.......................................................................................................................................................22110.0010000370
...........................................................................................CAAAGCGTTTGGATTCTGAAACT.............................................................................................................23110.0010003610
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2018.008400040
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................2118.008700010
..................................................TTTAGAATTCCTACGCTTT..........................................................................................................................................................1917.007101410
..................................................TTTAGAATTCCTACGCTTTACCC......................................................................................................................................................2315.005300110
...........................................................................................CAAAGCGTTTGGATTCTGAAACC.............................................................................................................2315.005000140
..................................................TTTAGAATTCCTACGCTTTACCA......................................................................................................................................................2313.003100200
...........................................................................................CAAAGCGTTTGGATTCTGAAAA..............................................................................................................2213.003000012
..........................................................................................GCAAAGCGTTTGGATTCTGAAA...............................................................................................................2213.003000201
.....................................................AGAATTCCTACGCTTTACC.......................................................................................................................................................1912.002100010
..................................................TTTAGAATTCCTACGCT............................................................................................................................................................1712.002000200
.............................................................................................AAGCGTTTGGATTCTGAAAC..............................................................................................................2012.002100010
........................................................................GTCGTA-TACGCAATTTGG....................................................................................................................................1812.002000020
...........................................................................................CAAAGCGTTTGGATTCTGAAAT..............................................................................................................2212.002000200
...................................................TTAGAATTCCTACGCTTTA.........................................................................................................................................................1912.002200000
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2312.002100100
....................................................TAGAATTCCTACGCTTTACA.......................................................................................................................................................2011.001000010
......................................................GAATTCCTACGCTTTACC.......................................................................................................................................................1811.001000010
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1811.001000100
............................................................................................AAAGCGTTTGGATTCTGAAACC.............................................................................................................2211.001100000
..................................................TTTAGAATTCCTACGCTTTACCGGA....................................................................................................................................................2511.001000010
...........................................................................................CAAAGCGTTTGGATTCTG..................................................................................................................1811.001000100
.................................................TTTTAGAATTCCTACGCTTTAC........................................................................................................................................................2211.001000010
..................................................TTTAGAATTCCTACGCTTTACCT......................................................................................................................................................2311.001100000
....................................................TAGAATTCCTACGCTTTAC........................................................................................................................................................1911.001000010
..................................................TTTAGAATTCCTACGCTTTACT.......................................................................................................................................................2211.001000010
..........................................................................................GCAAAGCGTTTGGATTCTGAAAC..............................................................................................................2311.001001000
..................................................TTTAGAATTCCTACGCTTTACCGTCGTA-................................................................................................................................................2811.001000100
..........................................................................................GCAAAGCGTTTGGATTCTGA.................................................................................................................2011.001001000
.............................................................................................AAGCGTTTGGATTCTGAAA...............................................................................................................1911.001100000
..................................................TTTAGAATTCCTACGCTTTT.........................................................................................................................................................2011.001001000
..................................................TTTAGAATTCCTACGCTTTACCGT.....................................................................................................................................................2411.001000100
..................................................TTTAGAATTCCTACGCTTTAAA.......................................................................................................................................................2220.501000010
..................................................TTTAGAATTCCTACGCTTTATT.......................................................................................................................................................2220.501001000
droGri2
---------------------------------------TATTGTATTGTTTTAGAATTCCTACGCTTTACCGTCGTA-TACGAAATTTGGCAAAGCGTTTGGATTCTGAAACGGTATGTGGTCA--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................TTTAGAATTCCTACGCTTTACC.......................................................................................................................................................221137.001371334
...........................................................................................CAAAGCGTTTGGATTCTGAAAC..............................................................................................................22132.00322111
..................................................TTTAGAATTCCTACGCTTTAC........................................................................................................................................................21112.0012111
...................................................TTAGAATTCCTACGCTTTACC.......................................................................................................................................................21110.0010100
............................................................................................AAAGCGTTTGGATTCTGAAAC..............................................................................................................2112.00220
....................................................TAGAATTCCTACGCTTTACC.......................................................................................................................................................2012.00220
...........................................................................................CAAAGCGTTTGGATTCTGAAAG..............................................................................................................2211.00101
.................................................TTTTAGAATTCCTACGCTTTACC.......................................................................................................................................................2311.00110
..................................................TTTAGAATTCCTACGCTTTA.........................................................................................................................................................2011.00110
........................................................................GTCGTA-TACGAAATTTGG....................................................................................................................................1811.00110
..................................................TTTAGAATTCCTACGCTTTACCG......................................................................................................................................................2311.00110
...................................................TTAGAATTCCTACGCTTTAC........................................................................................................................................................2011.00110
..................................................TTTAGAATTCCTACGCTT...........................................................................................................................................................1811.00110

Generated: 10/20/2015 at 10:15 PM