ID:

dan_1566

 Coordinate:

scaffold_13248:2846883-2847033 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_6320:8]; CDS [Dana\g-cds]; intron [Dana\g-in]

Repeatable elements

NameClassFamilyStrand
(T)nSimple_repeatSimple_repeat+
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_6301:5866-5886 -
  2. scaffold_9769:21-41 -
  3. scaffold_10180:4020-4040 +
  4. scaffold_13248:2633981-2634001 +
  5. dan_1566  scaffold_13248:2846917-2846937 -
  6. scaffold_13334:221654-221674 -
star
  1. scaffold_4585:1098-1116 +
  2. scaffold_9716:21-39 -
  3. scaffold_12903:430783-430801 -
  4. scaffold_12984:290794-290812 +
  5. scaffold_12984:298629-298647 +
  6. scaffold_13117:2356080-2356098 +
  7. scaffold_13150:91228-91246 +
  8. scaffold_13170:46608-46626 +
  9. scaffold_13248:757913-757931 +
  10. scaffold_13248:2294150-2294168 +
  11. dan_1566  scaffold_13248:2846955-2846973 -
  12. scaffold_13248:3471226-3471244 -
  13. scaffold_13266:10666298-10666316 -
  14. scaffold_13337:5346776-5346794 -
  15. scaffold_13337:13941774-13941792 +
  16. scaffold_13337:14100453-14100471 -
  17. scaffold_13340:12417477-12417495 -
  18. scaffold_13340:13853734-13853752 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTGATATTGTTGTTGTTGTGCTATGTTTGCTGCTTAATCGCTGCTTAATTTTAATACAAATTCCTCTATATGTTTTTTTTTTTTATATACTAATACCAACAAAAAATTAAAAAAAAAAAAACCAACACACCTACTAAAAACAAAATAAAAAAAAAAAAAAAAACCGATCCAAAAATCGAAAACCAAACTCCACCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCTG
**************************************************************************************************************.........................................................************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
.............................................................................................................CAAAAAAAAAAAGACCACCACACC...................................................................................................................... 24 3 1 1.00 1 1 0 0 0
................................................................................................................AAAAAAAAAAACCAAGACACC...................................................................................................................... 21 1 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................TAGCACCTCGGCGATGAGTCTC............................... 22 1 1 1.00 1 0 1 0 0
..............................................................................................................AAAAAAAAATAAACCACCACACC...................................................................................................................... 23 2 1 1.00 1 1 0 0 0
..............................................................................................................AAAAAAACAAAAACTAACACACC...................................................................................................................... 23 2 2 0.50 1 1 0 0 0
..................................................................................................................AAAAAAAAACCAGCACACC...................................................................................................................... 19 1 4 0.50 2 2 0 0 0
................................................................................................................AAAAAAAAAAACGAACACACC...................................................................................................................... 21 1 2 0.50 1 1 0 0 0
.................................................................................................................AAAAAAGAAACCAACACACC...................................................................................................................... 20 1 2 0.50 1 1 0 0 0
..............................................................................................................AGAAAAAAAAAAACCAACAC......................................................................................................................... 20 1 3 0.33 1 1 0 0 0
...............................................................................................................AAAAAAAAAGAACCAACCCACC...................................................................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................................................AACAAACTAAAAAAACAAAAAAAAACC.................................................................................... 27 2 3 0.33 1 1 0 0 0
................................................................................................................AAAAAACAAAACCAACACACCCA.................................................................................................................... 23 2 3 0.33 1 1 0 0 0
..............................................................................................................AAAAAAAGAAAGACCAACCCACC...................................................................................................................... 23 3 4 0.25 1 1 0 0 0
...................................................................................................................AAAAAAAACCAACACACCCA.................................................................................................................... 20 1 4 0.25 1 1 0 0 0
......................................................................................................AAAAAATTAACAAAAAAAAAACC.............................................................................................................................. 23 1 4 0.25 1 1 0 0 0
..............................................................................................................AAAAAAATAAAGACCACCACACC...................................................................................................................... 23 3 4 0.25 1 1 0 0 0
..................................................................................................................AAAAAAAAACTAACACACC...................................................................................................................... 19 1 4 0.25 1 1 0 0 0
................................................................................................................AAAGAAAAAAACGAACACACC...................................................................................................................... 21 2 4 0.25 1 1 0 0 0
................................................................................................................AAAAAAAAGAACCAACCCACC...................................................................................................................... 21 2 4 0.25 1 1 0 0 0
..................................................................................................................AAAAAAAAACCATCACACC...................................................................................................................... 19 1 4 0.25 1 1 0 0 0
..................................................................................................................AAAAAAGAACCAACACACCAA.................................................................................................................... 21 2 4 0.25 1 1 0 0 0
..................................................................................................................AAAAAAAAACCAACCCACC...................................................................................................................... 19 1 5 0.20 1 1 0 0 0
.........................................................................................................................................................CAAAAAAAAACACCTATCCAAAAA.......................................................................... 24 3 5 0.20 1 1 0 0 0
......................................................................................................................AAAAACCAAGACCCCTACCAAAA.............................................................................................................. 23 3 5 0.20 1 1 0 0 0
............................................................................................................TTAAAGAAAAAAAGACCACCAC......................................................................................................................... 22 3 5 0.20 1 1 0 0 0
.................................................................................................................AAAAAAAGAACCACCACACC...................................................................................................................... 20 2 5 0.20 1 1 0 0 0
................................................................................................................AAAAAGAAAAACCATCACACC...................................................................................................................... 21 2 5 0.20 1 1 0 0 0
...............................................................................................................AAAAAATAAAGACCACCACACC...................................................................................................................... 22 3 6 0.17 1 1 0 0 0
..................................................................................................................................................ATAAAAAAAAAAAAAAAAACC.................................................................................... 21 0 6 0.17 1 1 0 0 0
....................................................................................................................................................................................AAAACCCAACTCCACCACCA................................................... 20 2 6 0.17 1 1 0 0 0
................................................................................................................AAAGAAAAAAACCAACCCAC....................................................................................................................... 20 2 12 0.17 2 2 0 0 0
..................................................................................................................................................................................AGAACACCAAACTCCACCA...................................................... 19 2 6 0.17 1 1 0 0 0
..................................................................................................................AAAAAACAACCAACACCCCT..................................................................................................................... 20 2 6 0.17 1 1 0 0 0
...............................................................................................................AAAAAAAACAAACCAACACA........................................................................................................................ 20 1 6 0.17 1 1 0 0 0
..............................................................................................................AAAAAAAGAAAAACCAACACA........................................................................................................................ 21 1 6 0.17 1 1 0 0 0
..............................................................................................................AAAAAAAACAAAACCAACCCACC...................................................................................................................... 23 2 6 0.17 1 1 0 0 0
................................................................................................................AAAAAAAAAGACCACCACACCA..................................................................................................................... 22 3 19 0.16 3 3 0 0 0
....................................................................................................................................................................ACCGAGCCTAAAATGGAAAAC.................................................................. 21 3 7 0.14 1 0 0 1 0
..................................................................................................................AAAAAAAAACCAGCACACCAA.................................................................................................................... 21 2 7 0.14 1 1 0 0 0
.................................................................................................................AAAAAAAAAACCATCACAC....................................................................................................................... 19 1 7 0.14 1 1 0 0 0
...................................................................................................................AAAAAAGACCAACAAACCTA.................................................................................................................... 20 2 7 0.14 1 1 0 0 0
..............................................................................................................AAAAAAATAAAAACCAATACAC....................................................................................................................... 22 2 7 0.14 1 1 0 0 0
................................................................................................................AAAAACAAAAACGAACACACC...................................................................................................................... 21 2 7 0.14 1 1 0 0 0
..................................................................................................................AAAAAAGAACCAACACACCA..................................................................................................................... 20 2 7 0.14 1 1 0 0 0
..................................................................................................................AAAAAAAGACCAACACACCA..................................................................................................................... 20 2 7 0.14 1 1 0 0 0
..............................................................................................................AACAAAAGAAAAACCAATACACC...................................................................................................................... 23 3 7 0.14 1 1 0 0 0
.................................................................................................................................................AATAAAAAAAAACAAAAAAACC.................................................................................... 22 1 7 0.14 1 1 0 0 0
...............................................................................................................AAAAAAAAAAAACCATCACACCA..................................................................................................................... 23 2 7 0.14 1 1 0 0 0
...............................................................................................................AAAAAGACAAAACCACCACACC...................................................................................................................... 22 3 8 0.13 1 1 0 0 0
................................................................................................................AAAAAAAAAGACCACCACAC....................................................................................................................... 20 2 8 0.13 1 1 0 0 0
................................................................................................................................................AAATAAAAAAAAAAAAACAAACC.................................................................................... 23 1 8 0.13 1 1 0 0 0
.................................................................................................................AAAAAAAAAACCAGCACAC....................................................................................................................... 19 1 9 0.11 1 1 0 0 0
..................................................................................................................AAAAAAAATCCAACACAC....................................................................................................................... 18 1 10 0.10 1 1 0 0 0
..............................................................................................................................................................................AAAACGAAAACCAACCGCCACC....................................................... 22 3 10 0.10 1 1 0 0 0
...............................................................................................................AAAAAAACAAAACCAACACA........................................................................................................................ 20 1 10 0.10 1 1 0 0 0
..........................................................................................................................................................................................AAACTCCACAAAAAGCACC.............................................. 19 2 10 0.10 1 1 0 0 0
.................................................................................................................AAAAAAAAGACCACCACACC...................................................................................................................... 20 2 10 0.10 1 1 0 0 0
...................................................................................................................AAAAAAGACCAACACACCA..................................................................................................................... 19 2 10 0.10 1 0 0 1 0
....................................................................................................................AAAAAAACCAACACCCCCAC................................................................................................................... 20 2 10 0.10 1 1 0 0 0
..........................................................................................................................................GAAACAAAATAAAAAAAAAAAAAAAA....................................................................................... 26 1 11 0.09 1 1 0 0 0
...................................................................................................................AAAAAGAACCAGCACACC...................................................................................................................... 18 2 11 0.09 1 1 0 0 0
..................................................................................................................AAAAAAAGACCACCACACC...................................................................................................................... 19 2 12 0.08 1 0 0 1 0
................................................................................................................AAGAAAGAAGACCAACACACC...................................................................................................................... 21 3 13 0.08 1 1 0 0 0
................................................................................................................AAAAACAAAAACCAGCACACC...................................................................................................................... 21 2 13 0.08 1 1 0 0 0
........................................................................................................................................TAAAAACAGAATAAAAAAAA............................................................................................... 20 1 13 0.08 1 0 0 1 0
................................................................................................................AAAAAAAACAACCAACCCACC...................................................................................................................... 21 2 13 0.08 1 1 0 0 0
........................................................................................................................................................AAAAAAAAAGAAACCGACCCA.............................................................................. 21 2 13 0.08 1 0 0 1 0
..................................................................................................................AAAAAAAAACCAGCACAC....................................................................................................................... 18 1 14 0.07 1 1 0 0 0
..............................................................................................................AAAAAAAAAAATAACAACACACC...................................................................................................................... 23 2 14 0.07 1 1 0 0 0
...............................................................................................................AGAAAAAAAAAACCAAAACACC...................................................................................................................... 22 2 15 0.07 1 1 0 0 0
...............................................................................................................AAAAACAAAAAACCAACACA........................................................................................................................ 20 1 15 0.07 1 1 0 0 0
....................................................................................................................AAAAAAACCATCACACCAA.................................................................................................................... 19 2 15 0.07 1 1 0 0 0
..............................................................................................................................................CAAACTAAAAAAACAAAAGAAAACC.................................................................................... 25 3 15 0.07 1 1 0 0 0
................................................................................................................AAAAAAAAAAACCAACCCACCA..................................................................................................................... 22 2 15 0.07 1 1 0 0 0
.......................................................................................................................................CTCTAAACAAAATAAAAAAAAAAA............................................................................................ 24 2 16 0.06 1 1 0 0 0
..................................................................................................................AAAAAAAAACCACGACACC...................................................................................................................... 19 2 16 0.06 1 1 0 0 0
..............................................................................................................AAAAAAAAAAAACCCTACCCACC...................................................................................................................... 23 3 17 0.06 1 1 0 0 0
................................................................................................................AAAAAGAGAAACCAACACAC....................................................................................................................... 20 2 17 0.06 1 1 0 0 0
..............................................................................................................AAAAAACACAAAAGCAACACACC...................................................................................................................... 23 3 17 0.06 1 1 0 0 0
.......................................................................................................................................................AACAAAAAAAAAAACCGAACCAA............................................................................. 23 2 17 0.06 1 0 0 1 0
...............................................................................................................................................................................AAACGAGAACCAAACTCAACC....................................................... 21 3 18 0.06 1 1 0 0 0
...............................................................................................................AAAAAAAAGAAACCAACAC......................................................................................................................... 19 1 18 0.06 1 1 0 0 0
..............................................................................................................AAAAAAAAAAAAACCAACA.......................................................................................................................... 19 0 18 0.06 1 1 0 0 0
.............................................................................................................AAAGAAAAAAAAAACCAACCCACC...................................................................................................................... 24 3 19 0.05 1 1 0 0 0
..............................................................................................................................................................AAAAAAACCCATCCAAAAAAAGAA..................................................................... 24 3 19 0.05 1 1 0 0 0
.................................................................................................................AGAAAACAAACCAACACACTTA.................................................................................................................... 22 3 20 0.05 1 1 0 0 0
..............................................................................................................AAAAAAAAAGAAACCAACACT........................................................................................................................ 21 2 20 0.05 1 1 0 0 0
...................................................................................................................................................TAAAAAAAAACAAAAAAACC.................................................................................... 20 1 20 0.05 1 1 0 0 0
................................................................................................................AAATAAAAAAACCAACCCACCA..................................................................................................................... 22 3 20 0.05 1 1 0 0 0
...........................................................................................................................................AAACAAAATAAAAGAGAAAAAAAA........................................................................................ 24 2 20 0.05 1 0 0 1 0
..............................................................................................................AAAACAAAAACAACGAACACACC...................................................................................................................... 23 3 20 0.05 1 1 0 0 0
..............................................................................................................AAAGAAAAAAAAACCAACACC........................................................................................................................ 21 2 20 0.05 1 1 0 0 0
..............................................................................................................AAAAAGAAAAAAACCAACACC........................................................................................................................ 21 2 20 0.05 1 1 0 0 0
........................................................................................................................................................AAAAAAAAAAGACCCGAACCAAA............................................................................ 23 3 20 0.05 1 1 0 0 0
..................................................................................................................AAAAAATAACTAACACACC...................................................................................................................... 19 2 20 0.05 1 1 0 0 0
.................................................................................................................AAAAAAAGAACCAGCACACCA..................................................................................................................... 21 3 20 0.05 1 1 0 0 0
................................................................................................................AAACAAAAAGACCAACCCACC...................................................................................................................... 21 3 20 0.05 1 1 0 0 0
..................................................................................................................AAAAAAAAACTAACACACCCA.................................................................................................................... 21 2 20 0.05 1 1 0 0 0
................................................................................................................AAAAAAAGAAACCACCACAC....................................................................................................................... 20 2 20 0.05 1 1 0 0 0
.........................................................................................................................................GAAAACACAATAAAAAAAAAAAAAA......................................................................................... 25 2 20 0.05 1 1 0 0 0
................................................................................................................................................................................ATCGAAAACGAAATACCACC....................................................... 20 3 20 0.05 1 0 0 0 1
...........................................................................................................................................................AAAAAAAAAACCGCACCAAAA........................................................................... 21 2 20 0.05 1 1 0 0 0
................................................................................................................AAAATAAACAACCAAAACACCT..................................................................................................................... 22 3 20 0.05 1 1 0 0 0
.........................................................................................................................................................AAAAAAAAAAGACCGACCCA.............................................................................. 20 2 20 0.05 1 1 0 0 0
..........................................................................................................................................AAAACAAAATAAAAAAAACAAAAA......................................................................................... 24 1 20 0.05 1 1 0 0 0
................................................................................................................AAAAAAACAGACCACCACACC...................................................................................................................... 21 3 20 0.05 1 1 0 0 0
................................................................................................................AAAAAAAGAAACCAACAC......................................................................................................................... 18 1 20 0.05 1 1 0 0 0
................................................................................................................AAAAAGAAAAACCAACCCAC....................................................................................................................... 20 2 20 0.05 1 1 0 0 0
..........................................................................................................................................AAAACAAAATAAAACAAAAGAAA.......................................................................................... 23 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

AAAACTATAACAACAACAACACGATACAAACGACGAATTAGCGACGAATTAAAATTATGTTTAAGGAGATATACAAAAAAAAAAAATATATGATTATGGTTGTTTTTTAATTTTTTTTTTTTTGGTTGTGTGGATGATTTTTGTTTTATTTTTTTTTTTTTTTTTGGCTAGGTTTTTAGCTTTTGGTTTGAGGTGGTTGTCGTGGAGCCGCTACTCAGAGGACATGCTCACGTAGTTGTGCCACTAGCGAC
************************************************************************************.........................................................************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V106
head
 V039
embryo
 V055
head
...............................................................AGGAGATGTACAAAAAAAGAA....................................................................................................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................TCACGTGGTTGTGCCAAGAG.... 20 3 6 0.33 2 2 0 0 0 0 0
........ACCAACCACAACACAATACAAA............................................................................................................................................................................................................................. 22 3 8 0.13 1 0 0 1 0 0 0
..................................................................................................................................................................................GCTTGTGCTTTCAGGTGGTT..................................................... 20 3 10 0.10 1 1 0 0 0 0 0
............................................................................AAAAAAAAACTGTATGATTA........................................................................................................................................................... 20 2 17 0.06 1 0 0 0 1 0 0
.............................................................CAAGGAGACATACAAAAA............................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 1 0
...............................GCCGAATTAGAGACGAAGT......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13248:2846833-2847083 - dan_1566 TTTTGA--------------------T--ATTGTTGTTG-TTGTGCTATG-TTT---GC--TGCTTA-ATCGCTGCTTAA------------TT-TTAATACAAATTCCTCTATATGTTTTTTTTTTTTAT---ATA---CTAA---TACCAACAAAA----------AATTAA-------------AAA----------------AAAA--AAAACCAAC-ACACCTACTAAAAACAAAATAAA-------------------AAA--AAAAAAAAAAAC----------------CGATCCAAAA---ATC------------GA-AAACCA--------AACTC------------CA-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCTG
droBip1 scf7180000396429:160804-161061 + TATTTA-----------------TATT--GT---TGTTG-TAGTGCAATG-TTT---GC--TGCTTA-ATCGCTGCTTAA------------TT-TTAATACAAAATCCTCTATATGTTTTTTTTT--TAT---ATA---CTAA---TACCAACCAA---------CAAAAAAA----------------------------TATTAAAATTAAAACCAAACACACCT----ACTAAAA-ATGAA--------------------AA-AAAA---AAAAAACG----A-----------AACCAAAA---ACCAAAACCAAAATCGA-AAACCA--------AACTC------------AC--CAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droKik1 scf7180000302592:1582980-1583210 - TTTTA-----------------TTGCT--AT---TGTTGTTAGTGCAATG-TTT---GT--CGCTTT-ACCGCAGCTTAT------------TC-TTAATACAAGTTCCT----------TTCTTT--CTC---AAA---CTAA---TACAATCCACA----------AAAAAA--AA-----------TTAA-------------AAAA--AAAACAAAA-CTACCA----ACAAAA------------------------------------------ACGAACCAAAACCAA------CCAAA----------ACCAAAACC---GAACCC--------AACTC------------AC-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAATGCATCAACACGGTGATCGCGG
droFic1 scf7180000454073:1344884-1345112 + CA-------------------CTTGCT--AT---TTTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT-----------TTTTT--CTC---AAA---CCACTTATAAAAA---AA--AACCCACAAAAAAA-----------------------------------A--ACAAACGAA-CCACCA----ACAACAA-A------------------A--AAAAA------------------CCAAAACAAATACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droEle1 scf7180000491044:98245-98484 + TGTTGTTATTGCCAT-TGCTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT------T-TTTTTTTT--CTC---AAA---CTAA---TACAAACCAAA----------AAAAAA--------------------------------AAAA--CAAACCGAA-CAATCA----ACAAAAA---------------------------A------------------CCAAAACAAAAACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droRho1 scf7180000779342:10083-10318 + CATTG-------------CTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT----------TTTTTT--CTC---AAA---CTAA---TACAAACCACA----------ACAACA----------------------------------AA--AAAACCGAA-CCACCA----ACAAAAA-A-------------ACCAACAAAAAAA------------------CCAAAACAAATACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCTGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCTG
droBia1 scf7180000302041:644990-645215 - CATTG-------------CCATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTA-ACCGCTGATTAC------------TC-TTAATACAAGTTCCT------------TTTT--CTT---AAA---CTAA---TACAAACCACA----------AAAAA----------------TGAAAA-----------CCAA--CCAACCGAA-CCACCA----ACAAAA----------------------------A------------------CCAAATCAAA-ACGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC--CAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droTak1 scf7180000414562:537470-537706 + TGTTGC------CAT-TGCCAATTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT-----------TTTTT--CTC---AAA---CTAA---TACCAACCACA----------AAAAAA--A----------AAACAAAA-----------ACAA--CCAACCAAA-CCACCA----ACAAAA----------------------------A------------------CCAAAACAAAAACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC--CAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droEug1 scf7180000409008:43529-43764 - TGTTGC------CAT-TGCTATTTGCTATAT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT-----------TTTTT--CTC---AAA---CTAA---TACAAACCACA----------ACAAAA--AA--------------------------TAAAAA--CCAACCGAA-CCACCA----ACAAAA----------------------------A------------------CCAAAACAAAAACGAACCAAAA---ACC---------------AAACCG--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCAG
dm3 chrX:13624628-13624882 - TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCTACTT--T-TTTTTTTT--CTC---AAA---CTAA---TACAAACCACA----------AAAAAA-------------AAACAA--AAAAAATTATCAAAA--CTAACCGAA-ACACCA----ACAAAAA-ATGAAA--ACAA-------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTATGAGTGCATCAACACGGTGATCGCGG
droSim2 x:12960524-12960762 - dsi_14426 TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCTAC------TTTTTTTT--CTC---AAA---CTAA---TACAAACCACA----------AACAAA-----------------------AAAATTATCAAAA--CTAACCGAA-ACACCA----ACAAAAA-ATGAA--------------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droSec2 scaffold_20:263079-263330 - TAAT-----TGCTATTTGCTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-GTAATATAAGTTCCTAC-------TTTTTTT--CTC---AAA---CA-A---AACAAATCACA--------CAAAA-AA-----------------------AAAATTATCAAAA--CTAACCGAA-ACACCT----ACAAAAA-ATGAA--------------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droYak3 X:7918544-7918819 - ATTTG-------------CTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCCATTTATT-TTTTTATT--CTC---AAACTACTAA---TACAAACCACAAC----AACA----ACAAAATGAAAAA-AAAAAAA-----------AAAAAA--CTAAACAAA-ACACGA----ACAAAAA-ATGAAA--ACAA------------AAA-CAAA-ACAAAATA----------------CGAACCAAAAAAAACC-------------A-AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
droEre2 scaffold_4690:13258787-13259023 + TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ATCGCTGCTTAC------------TC-TTAATACAAGTACCT------T-TTTTTTTT--CTC---AAC---CTAA---TACAAACTACAAC----AACA----ACAAAA------------------------TA--TAAA--CTAACCGAA-ACACAA----ACAAAAAAATGAA--------------------AA-CAAA-ACAAAAAA----------------CGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCAGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGG
dp5 XL_group1e:1268876-1269124 - TACTGT-----------------TGTC--GT---TGTAG-AAGTGCAAT--TTT---GATACGCTTTAAACGCTGCTTAC------------TCTTTAATACAAAATTCT----------TCTTTT--CACCAAAA------------ACCAACCAA---A----------------------AA-CAAACCG--AAAAACCAATCAAAC--CCAAACGA------------------A-ATGAAACCACAAAAACAAAC--AAAAAAC-AA-AAAAAACC----------------CCAACCACA----ACC-------------ACAACCAC--------AAATC-----------GAA-TCAACAGCACCTCGGCCATGAGTCTTTTGTATGAATGCATCAACACGGTGATAGCAG
droPer2 scaffold_18:115029-115278 - TACTGT-----------------TGTC--GT---TGTAG-AAGTGCAAT--TTT---GATACGCTTTAAACGCTGCTTAC------------TCTTTAATACAAAATTCT----------TCTTTT--CACCAAAA------------ACCAACCAA---A----------------------AACCAAACCG--AAAAACCAATCAAAT--CCAAACGA------------------A-ATGAAACCACAAAAACAAAC--AAAAAAC-AA-AAAAAACC----------------CCAACCACA----ACC-------------ACAACCAC--------AAATC-----------GAA-TCAACAGCACCTCGGCCATGAGTCTTTTGTATGAATGCATCAACACGGTGATAGCAG
droWil2 scf2_1100000004909:7679559-7679761 - dwi_2797 TTTT--------------------------------------------------------------------------------------------------------TT----------GCTTTT--TACCCCAAA---CA---------AAAAAA---A----------------------AA----CCAAAAACAACCAAATTAAAA--TAAAAAAA------------------A-ATCCGACCAAAAAAACATAC--AAAAACC-AA-ACAAAAAA----------------CCAACCTCC----TCC-------------ATCATGATGTGTGTGTGTGTCTGTGTGTGTATGTA-TCAACAGCACCTCGGCGATGAGTCTTCTATACGAGTGCATCAACACGGTGATTGCGG
droVir3 scaffold_12970:8001727-8001900 - TGTTGT-----------------TGTT--GT---TGTTG-TTGTTTTTTG-TTTTACGC--TTCTTT-TGGGCCGCTTTAATCGAACTGAACTCTTTGATATACCGCCGC----------CCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---------------CC---------GCCAACCCGTGTCCAACCGTCCA--ACCCAAACAGCACATCGGCAATGAGCCTGCTCTACGAGTGCATCAACACGGTCATCGCGG
droMoj3 scaffold_6482:1529147-1529316 + AATTGC--------------------T--GTTGTTGTTG-TTGT--TTTGTTTT---GC--TTCTTT-TGTGCTGCTTTAATCGAACTGAAATCTTTGATATAACGCCGC----------CCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---------------CC---------GCCAACCCGTGTCCAACCGTCCA--ACCCAAACAGCACCTCGGCAATGAGCCTCCTCTACGAGTGCATCAATACAGTCATCGCCG
droGri2 scaffold_15203:11070552-11070606 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCACATCTGCAATGAGCCTCCTCTACGAGTGCATTAACACGGTGATCGCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTTGA--------------------T--ATTGTTGTTG-TTGTGCTATG-TTT---GC--TGCTTA-ATCGCTGCTTAA------------TT-TTAATACAAATTCCTCTATATGTTTTTTTTTTTTAT---ATA---CTAA---TACCAACAAAA----------AATTAA-------------AAA----------------AAAA--AAAACCAAC-ACACCTACTAAAAACAAAATAAA-------------------AAA--AAAAAAAAAAAC----------------CGATCCAAAA---ATC------------GA-AAACCA--------AACTC------------CA-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................ATAAA-------------------AAA--AAAAAAAAAAAC----------------C.........................................................................................................................2160.171010000
............................................................................................................................................................................AA-------------AAA----------------AAAA--AAAACCAAC-A....................................................................................................................................................................................................19180.061010000
droBip1
TATTTA-----------------TATT--GT---TGTTG-TAGTGCAATG-TTT---GC--TGCTTA-ATCGCTGCTTAA------------TT-TTAATACAAAATCCTCTATATGTTTTTTTTT--TAT---ATA---CTAA---TACCAACCAA---------CAAAAAAA----------------------------TATTAAAATTAAAACCAAACACACCT----ACTAAAA-ATGAA--------------------AA-AAAA---AAAAAACG----A-----------AACCAAAA---ACCAAAACCAAAATCGA-AAACCA--------AACTC------------AC--CAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTA-----------------TTGCT--AT---TGTTGTTAGTGCAATG-TTT---GT--CGCTTT-ACCGCAGCTTAT------------TC-TTAATACAAGTTCCT----------TTCTTT--CTC---AAA---CTAA---TACAATCCACA----------AAAAAA--AA-----------TTAA-------------AAAA--AAAACAAAA-CTACCA----ACAAAA------------------------------------------ACGAACCAAAACCAA------CCAAA----------ACCAAAACC---GAACCC--------AACTC------------AC-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAATGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotal
No Reads
droFic1
CA-------------------CTTGCT--AT---TTTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT-----------TTTTT--CTC---AAA---CCACTTATAAAAA---AA--AACCCACAAAAAAA-----------------------------------A--ACAAACGAA-CCACCA----ACAACAA-A------------------A--AAAAA------------------CCAAAACAAATACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTGTTATTGCCAT-TGCTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT------T-TTTTTTTT--CTC---AAA---CTAA---TACAAACCAAA----------AAAAAA--------------------------------AAAA--CAAACCGAA-CAATCA----ACAAAAA---------------------------A------------------CCAAAACAAAAACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-CCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotal
No Reads
droRho1
CATTG-------------CTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT----------TTTTTT--CTC---AAA---CTAA---TACAAACCACA----------ACAACA----------------------------------AA--AAAACCGAA-CCACCA----ACAAAAA-A-------------ACCAACAAAAAAA------------------CCAAAACAAATACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCTGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCTGSizeHit CountTotal NormTotal
No Reads
droBia1
CATTG-------------CCATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTA-ACCGCTGATTAC------------TC-TTAATACAAGTTCCT------------TTTT--CTT---AAA---CTAA---TACAAACCACA----------AAAAA----------------TGAAAA-----------CCAA--CCAACCGAA-CCACCA----ACAAAA----------------------------A------------------CCAAATCAAA-ACGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC--CAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotal
No Reads
droTak1
TGTTGC------CAT-TGCCAATTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT-----------TTTTT--CTC---AAA---CTAA---TACCAACCACA----------AAAAAA--A----------AAACAAAA-----------ACAA--CCAACCAAA-CCACCA----ACAAAA----------------------------A------------------CCAAAACAAAAACGAACCAAA----ACC---------------AAACCC--------AACTC------------AC--CAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotal
No Reads
droEug1
TGTTGC------CAT-TGCTATTTGCTATAT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCT-----------TTTTT--CTC---AAA---CTAA---TACAAACCACA----------ACAAAA--AA--------------------------TAAAAA--CCAACCGAA-CCACCA----ACAAAA----------------------------A------------------CCAAAACAAAAACGAACCAAAA---ACC---------------AAACCG--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCAGSizeHit CountTotal NormTotal
No Reads
dm3
TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCTACTT--T-TTTTTTTT--CTC---AAA---CTAA---TACAAACCACA----------AAAAAA-------------AAACAA--AAAAAATTATCAAAA--CTAACCGAA-ACACCA----ACAAAAA-ATGAAA--ACAA-------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTATGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GATGAGTCTCCTGTATGAGTGC...................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................C-TCAACAGCACCTCGGCGATGAGTC.................................2514.0040000000000000000000000000000000000000000000000000020000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GATGAGTCTCCTGTATGAGTG....................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGATGAGTCTCCTGTATGAGTG....................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCAACAGCACCTCGGCGATGAGTC.................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCTCCTGTATGAGTGCATCAACACGGTGA......2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTT.................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000
.........................................................................................................................................................................................................................................................................................................................................................................................CGATGAGTCTCCTGTATGAGTGC...................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................TAACCGAA-ACACCA----ACAAAAA-ATGAAA--A..........................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GATGAGTCTCCTGTATGAGT.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCGGCGATGAGTCTCCTGTATGAGTGC...................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000
..........................................................................................................................TTTT--CTC---AAA---CTAA---TACAAACCACA----------AAAAA......................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................T-ACCGCTGCTTAC------------TC-TTAATACAAGT.........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGCATCAACACGGTGAT.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AACTC------------AC-TCAACAGCACCTCGGCGAT......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GCTTAC------------TC-TTAATACAAGTTCCTACTT--T-.............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CAAAA--CTAACCGAA-ACACCA----ACAAAAA-A..................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CCC--------AACTC------------AC-TCAACAGCACCTCGGCGA.......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GAGTCTCCTGTATGAGTGCAT.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAAA-ATGAAA--ACAA-------------AA-CAAA-ACAAAAAA----------------C.........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TAC------------TC-TTAATACAAGTTCCTACTT--T-TT...........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCT--AT---TGTTG-TAGTGCAATG-................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................TTATCAAAA--CTAACCGAA-ACACCA----ACA........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TG-TTT---GT--CGCTTT-ACCGCTGCT......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACA...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ATGAGTCTCCTGTATGAGTGC...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................AATTATCAAAA--CTAACCGAA-ACACCA----AC.........................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GCACCTCGGCGATGAGTCTCCTGTATGAG......................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGC.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------............................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGAGTGCATCAACACGGTGATCGC..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................TTTGCT--AT---TGTTG-TAGTGCAATG-................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................GCGATGAGTCTCCTGTATGAGT.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AAA--ACAA-------------AA-CAAA-ACAAAAAA----------------CGAACC....................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGTGCATCAACACGGTGAT.....2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................A----ACAAAAA-ATGAAA--ACAA-------------AA-CAAA-ACAAAA............................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGC...................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAAAAA-------------AAACAA--AAAAAATTATCAAAA--C..............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACAGCACCTCGGCGATGAGTCTCCTG............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AAA-ACAAAAAA----------------CGAACCAAAA---AC...........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TATGAGTGCATCAACACGGTGATCGCGG2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTT-ACCGCTGCTTAC------------TC-TTAATACAAGT.........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TTATCAAAA--CTAACCGAA-ACACCA----AC.........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAA---TACAAACCACA----------AAAAAA-------------AAACAA--AA..............................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CAA-------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------...........................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCAACAGCACCTCGGCGATGAGTCTCC..............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................C-TCAACAGCACCTCGGCGATGAGAT.................................2511.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AAAA--CTAACCGAA-ACACCA----ACAAAAA-...................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTC---AAA---CTAA---TACAAACCACA----------AAAAAA-------------AA......................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------A............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TTT--CTC---AAA---CTAA---TACAAACCACA----------AA.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................ACCTCGGCGATGAGTCTCCTGTATGAGT.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................AAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------A...........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGTTG-TAGTGCAATG-TTT---GT--CGCTT.................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTCCTGTATGAGTGCA..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................ACCGCTGCTTAC------------TC-TTAATACAAGTTCC......................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................A--ACAA-------------AA-CAAA-ACAAAAAA----------------CGAACCAA..................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACACGGTGATCG...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGC..........................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T--AT---TGTTG-TAGTGCAATG-TTT---GT--CGT...................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................GAAA--ACAA-------------AA-CAAA-ACAAAAA...........................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CACA----------AAAAAA-------------AAACAA--AAAAAA..........................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................A----ACAAAAA-ATGAAA--ACAA-------------AA-A......................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ACA----------AAAAAA-------------AAACAA--AAAAA...........................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGAAA--ACAA-------------AA-CAAA-ACAGT.............................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAAAAA-------------AAACAA--AAAAAAT.........................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................A----------AAAAAA-------------AAACAA--AAAAAAT.........................................................................................................................................................................................................................20200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAAAAA-------------AAACAA--AAAAAA..........................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCTAC------TTTTTTTT--CTC---AAA---CTAA---TACAAACCACA----------AACAAA-----------------------AAAATTATCAAAA--CTAACCGAA-ACACCA----ACAAAAA-ATGAA--------------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................GATGAGTCTCCTGTACGAGT.....................2011.00100010000000000000
droSec2
TAAT-----TGCTATTTGCTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-GTAATATAAGTTCCTAC-------TTTTTTT--CTC---AAA---CA-A---AACAAATCACA--------CAAAA-AA-----------------------AAAATTATCAAAA--CTAACCGAA-ACACCT----ACAAAAA-ATGAA--------------------AA-CAAA-ACAAAAAA----------------CGAACCAAAA---ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATTTG-------------CTATTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ACCGCTGCTTAC------------TC-TTAATACAAGTTCCCATTTATT-TTTTTATT--CTC---AAACTACTAA---TACAAACCACAAC----AACA----ACAAAATGAAAAA-AAAAAAA-----------AAAAAA--CTAAACAAA-ACACGA----ACAAAAA-ATGAAA--ACAA------------AAA-CAAA-ACAAAATA----------------CGAACCAAAAAAAACC-------------A-AAACCC--------AACTC------------AC-TCAACAGCACCTCGGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................ATGAAAAA-AAAAAAA-----------AAAAA..................................................................................................................................................................................................................20180.06100100000000
.................................................................................................................................................................................ATGAAAAA-AAAAAAA-----------AAAA...................................................................................................................................................................................................................19200.05100000000001
droEre2
TA-------------------TTTGCT--AT---TGTTG-TAGTGCAATG-TTT---GT--CGCTTT-ATCGCTGCTTAC------------TC-TTAATACAAGTACCT------T-TTTTTTTT--CTC---AAC---CTAA---TACAAACTACAAC----AACA----ACAAAA------------------------TA--TAAA--CTAACCGAA-ACACAA----ACAAAAAAATGAA--------------------AA-CAAA-ACAAAAAA----------------CGAACCAAA----ACC---------------AAACCC--------AACTC------------AC-TCAACAGCACCTCAGCGATGAGTCTCCTGTACGAGTGCATCAACACGGTGATCGCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................T-ATCGCTGCTTAC------------TC-TTAATA..............................................................................................................................................................................................................................................................................................................................2111.0011000000
dp5
TACTGT-----------------TGTC--GT---TGTAG-AAGTGCAAT--TTT---GATACGCTTTAAACGCTGCTTAC------------TCTTTAATACAAAATTCT----------TCTTTT--CACCAAAA------------ACCAACCAA---A----------------------AA-CAAACCG--AAAAACCAATCAAAC--CCAAACGA------------------A-ATGAAACCACAAAAACAAAC--AAAAAAC-AA-AAAAAACC----------------CCAACCACA----ACC-------------ACAACCAC--------AAATC-----------GAA-TCAACAGCACCTCGGCCATGAGTCTTTTGTATGAATGCATCAACACGGTGATAGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTTTGTATGAATGC...................2011.0010100000000
.......................TGTC--GT---TGTAG-AAGTGCAAT--T...............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TACTGT-----------------TGTC--GT---TGTAG-AAGTGCAAT--TTT---GATACGCTTTAAACGCTGCTTAC------------TCTTTAATACAAAATTCT----------TCTTTT--CACCAAAA------------ACCAACCAA---A----------------------AACCAAACCG--AAAAACCAATCAAAT--CCAAACGA------------------A-ATGAAACCACAAAAACAAAC--AAAAAAC-AA-AAAAAACC----------------CCAACCACA----ACC-------------ACAACCAC--------AAATC-----------GAA-TCAACAGCACCTCGGCCATGAGTCTTTTGTATGAATGCATCAACACGGTGATAGCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................CC-------------ACAACCAC--------AAATC-----------GAA-TCAACA...................................................2411.001010000
droWil2
TTTT--------------------------------------------------------------------------------------------------------TT----------GCTTTT--TACCCCAAA---CA---------AAAAAA---A----------------------AA----CCAAAAACAACCAAATTAAAA--TAAAAAAA------------------A-ATCCGACCAAAAAAACATAC--AAAAACC-AA-ACAAAAAA----------------CCAACCTCC----TCC-------------ATCATGATGTGTGTGTGTGTCTGTGTGTGTATGTA-TCAACAGCACCTCGGCGATGAGTCTTCTATACGAGTGCATCAACACGGTGATTGCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................GTA-TCAACAGCACCTCGGC.........................................1911.00100010
.................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTCTGTGTGTGTA..............................................................20200.05101000
droVir3
TGTTGT-----------------TGTT--GT---TGTTG-TTGTTTTTTG-TTTTACGC--TTCTTT-TGGGCCGCTTTAATCGAACTGAACTCTTTGATATACCGCCGC----------CCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---------------CC---------GCCAACCCGTGTCCAACCGTCCA--ACCCAAACAGCACATCGGCAATGAGCCTGCTCTACGAGTGCATCAACACGGTCATCGCGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................CTCTACGAGTGCATCAACACGGT........2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AGCCTGCTCTACGAGTGCATCAAC.............2411.001000000000000000000000000000000010000000000000000000000000000000
........................GTT--GT---TGTTG-TTGTTTTTTG-T...............................................................................................................................................................................................................................................................................................................................................................................21170.061000000000000000000000000100000000000000000000000000000000000000
.........................TT--GT---TGTTG-TTGTTTTTTG-T...............................................................................................................................................................................................................................................................................................................................................................................20200.051000000000100000000000000000000000000000000000000000000000000000
.........................TT--GT---TGTTG-TTGTTTTTTG-TT..............................................................................................................................................................................................................................................................................................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
droMoj3
AATTGC--------------------T--GTTGTTGTTG-TTGT--TTTGTTTT---GC--TTCTTT-TGTGCTGCTTTAATCGAACTGAAATCTTTGATATAACGCCGC----------CCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---------------CC---------GCCAACCCGTGTCCAACCGTCCA--ACCCAAACAGCACCTCGGCAATGAGCCTCCTCTACGAGTGCATCAATACAGTCATCGCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAATACAGTCATCGCC.2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................CCAACCGTCCA--ACCCAAACAG..................................................2111.001000010
droGri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCACATCTGCAATGAGCCTCCTCTACGAGTGCATTAACACGGTGATCGCGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:25 AM