ID:

dan_1549

 Coordinate:

scaffold_13248:2392070-2392198 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.4 -10.0

Flybase annnotation

exon [dana_GLEANR_6528:5]; CDS [Dana\GF22569-cds]; exon [dana_GLEANR_6528:4]; CDS [Dana\GF22569-cds]; intron [Dana\GF22569-in]; Antisense to intron [Dana\GF22377-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. dan_1549  scaffold_13248:2392164-2392181 +
  2. scaffold_13266:2861382-2861399 -
  3. scaffold_13337:2178455-2178472 -
  4. scaffold_13337:5446965-5446982 +
  5. scaffold_13337:11925698-11925715 +
  6. scaffold_13340:8983565-8983582 -
  7. scaffold_13340:9037546-9037563 +
  8. scaffold_13340:14188970-14188987 +
  9. scaffold_13417:2253198-2253215 +
star
  1. scaffold_12916:1381187-1381208 +
  2. scaffold_13047:648848-648869 +
  3. scaffold_13248:1748083-1748104 +
  4. dan_1549  scaffold_13248:2392134-2392155 +
  5. scaffold_13248:3117124-3117145 +
  6. scaffold_13335:259441-259462 +
  7. scaffold_13337:10460549-10460570 +
  8. scaffold_13417:451471-451492 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCTCCGCCGAGATTCTTCTCCACCTTCGGCTATGAGCCATCGCCGGGCGTGGGGCATGGAAGCACGTTGACACGGCGCAGCATGCAACATCCCCAGCAACATCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGATGATTGTGCCGCGCCAGGAGTCCCTGGAGCTGGAGGAGCGGCACAGTGGACGTTCGCACTACGGCGG
******************************************************************************************************************.((.((.((.((.((....)).)).)).)).))...............******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M058
embryo
 M044
female body
 V055
head
 V105
male body
........................................................................................................................................................................................CCTGGAGCGGGAGGATGGGCA........................ 21 3 7 1.29 9 5 1 1 1 1
.......................................................GCGTGGTAGCACGTTAACAC.......................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0
............................................CCGGACGGGGGCCATGGAAG..................................................................................................................................................................... 20 3 7 0.43 3 0 0 3 0 0
.............................................................................................................................................................................................AGCTGGATGAGCGGATCAGTG................... 21 3 4 0.25 1 0 0 0 1 0
................................................................................................................................................AGCAGCAACAACAGCAGA................................................................... 18 0 9 0.22 2 0 2 0 0 0
..............................................................................................................................AGCAGCAGCAGCAGCAGCAGCA................................................................................. 22 0 20 0.20 4 4 0 0 0 0
..................................................................................................................AGCAGCAGCAGCAGCAGCAGCA............................................................................................. 22 0 20 0.20 4 4 0 0 0 0
........................................................................................................................AGCAGCAGCAGCAGCAGCAGCA....................................................................................... 22 0 20 0.20 4 4 0 0 0 0
.....................................................................................................................AGCAGCAGCAGCAGCAGCAGCA.......................................................................................... 22 0 20 0.20 4 4 0 0 0 0
...........................................................................................................................AGCAGCAGCAGCAGCAGCAGCA.................................................................................... 22 0 20 0.20 4 4 0 0 0 0
.................................................................................................................................AGCAGCAGCAGCAGCAGCAGCA.............................................................................. 22 0 20 0.20 4 4 0 0 0 0
......................................................................................................ATCCCCAGCAGCAGCAGCA............................................................................................................ 19 0 9 0.11 1 1 0 0 0 0
........................................................................................................................AGCAGCAGCAGCAGCAGCAGCAGC..................................................................................... 24 0 20 0.10 2 0 2 0 0 0
..............................................................................................................CAGCAGCAGCAGCAGCAGCAGCAG............................................................................................... 24 0 20 0.10 2 0 0 2 0 0
.................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAG............................................................................................ 24 0 20 0.10 2 0 0 2 0 0
...........................................................................................................................AGCAGCAGCAGCAGCAGCAGCAGC.................................................................................. 24 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................AGCAGCAGCAGCAGCAGCAGCAGC............................................................................... 24 0 20 0.10 2 0 2 0 0 0
...........................................GCCGGGCGGTGGCCATGGAA...................................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0
...........................................GCAGGGCGGGGGTCATGGAA...................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 1 0
............................................................................................................................GCAGCAGCAGCAGCAGCA....................................................................................... 18 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................CAGCAGCAGCAGCAGCAGC............................................................................... 19 0 20 0.05 1 1 0 0 0 0
................................................................................................................................CAGCAGCAGCAGCAGCAGC.................................................................................. 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................GCAGCAGCAGCAGCAGCA.................................................................................... 18 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................GCAGCAGCAGCAGCAGCA.......................................................................................... 18 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................GCAGCAGCAGCAGCAGCA................................................................................. 18 0 20 0.05 1 1 0 0 0 0
.............................................................................................................GCAGCAGCAGCAGCAGCAGCA................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................CAGCAGCAGCAGCAGCAACAACAGC...................................................................... 25 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................AGCAGCAGCAGCAGCAGCAGCAAC............................................................................ 24 0 20 0.05 1 0 1 0 0 0
................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAAC............................................................................ 25 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................CAGCAGCAGCAGCAGCAGC........................................................................................... 19 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................................GCAGCAGCAGCAGCAGCA.............................................................................. 18 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................AGCAGCAGCAGCAGCAACAA.......................................................................... 20 0 20 0.05 1 1 0 0 0 0
....................................................................................................................CAGCAGCAGCAGCAGCAGC.............................................................................................. 19 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

GCGGAGGCGGCTCTAAGAAGAGGTGGAAGCCGATACTCGGTAGCGGCCCGCACCCCGTACCTTCGTGCAACTGTGCCGCGTCGTACGTTGTAGGGGTCGTTGTAGGGGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTTGTCGTCTACTAACACGGCGCGGTCCTCAGGGACCTCGACCTCCTCGCCGTGTCACCTGCAAGCGTGATGCCGCC
*******************************************************************.((.((.((.((.((....)).)).)).)).))...............****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V055
head
 M058
embryo
...GAGGCGGCTCTAAGAAGTGGG............................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................TCGACCTCCTAACCGTGTCA.................... 20 2 1 1.00 1 0 0 1 0
............................................................................................GGGGTCGTTGTGGGGGTCGTCG................................................................................................................... 22 1 1 1.00 1 0 1 0 0
.............................................................................................AGGTCGTTGTAAGGGTCGTC.................................................................................................................... 20 2 2 0.50 1 0 0 0 1
........................................................................................................................................................................................................GACGTGTCTCCTGCAAGC........... 18 2 5 0.20 1 1 0 0 0
....................................................................................................................................................................TAACACGGCACTGTCTTCAG............................................. 20 3 8 0.13 1 0 0 1 0
..........................................................................................TTGAGGTCGTTGTGGGGGTCGTCG................................................................................................................... 24 3 9 0.11 1 0 1 0 0
...............................................................................................GTCGTTGTGGGGGTCGTCG................................................................................................................... 19 1 11 0.09 1 0 1 0 0
..................................................................................................................................................................................CGTCAGTGACCTCGACCTC................................ 19 2 12 0.08 1 1 0 0 0
.............................................................................................GGGTCGTTGGGGGGGACGTC.................................................................................................................... 20 3 17 0.06 1 0 0 1 0
............................................................................................GAGGTCGTTGTGGGGGTCGTAG................................................................................................................... 22 3 20 0.05 1 0 1 0 0
..............................................................................CTTCGGACGATGTAGGGG..................................................................................................................................... 18 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13248:2392020-2392248 + dan_1549 CGCCTCCG---CCGAGATTCTT------CTCCACCTTCGGCTATGAG----CCATC---------GC---------------------------------------CGGGCGTGGGGCA---TGGA--AGCACGTTGA----CACGGCG----CAGCATGCAACATCCCCAGCAACATC------------CCCA--------------------------GCAGCAGCAGCA---G-----------------CA---GCAGCAGCAGCAGCAGC---------------------AGCAGCAGCAACAACAGCAGATGATT---------------------GTGCCGCGCCAG-----------------------------------G-----AGTCCCTGGAGCTGGAGGAG-----------------------CGG--CACAGTGGACGTTCGCACT-----------------ACGGCGG
droBip1 scf7180000396575:505006-505189 - CGCCACCG---CCGAGATTCTT------CTCCACCTTCGGCTATGAG----CCGTC---------GC---------------------------------------CGGCCGTAGGGCACGGAG-----GTACGCTGA----CACGGCG----CAGCATGCAACA-----------------------------------------------------TCCCC---A-----------------------------------------------------------------------GCAGCAGCAGCAACAGCAGATGATT---------------------GTGCCGCGCCAG-----------------------------------G-----AGTCCCTGGAGCTGGAGGAG-----------------------CGG--CACAGTGGACGTTCGCACT-----------------ATGGCGG
droKik1 scf7180000302344:1587470-1587674 - CGCCGCCG---CCGCGATTCTT------CTCCACATTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGTCGG----------CGGCTG-GGACACTGA----CAAGGCG----CAGCATGCAGCA-----------------------------------------------------GCAAC---AGCAGCA------GCAACAGCAGCAACA-----------------------------------------GCAGCAGCAGCAACATCACCA---GCA---------------------GCTGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGCTGGAGGAG-----------------------CGA--CACAGCCTTCGCTCGCACT-----------------ACGGTGG
droFic1 scf7180000453549:54434-54638 + CGCCGCCG---CCGCGCTTCTT------CTCCACCTTTGGCTACGAG----CCATCGGGA---TCGC---------------------------------------CATCGG----------TGGC----AACGCTGA----CGAGGCG----CAGCATGCACCA-----------------------------------------------------TCCGCAGCAACAGCA---GCAGCAACAACACCTGCA-----------------------------------------ACAGCAGCAGCAACATAACCA---------------------------GCTGCCCCGCCAG-----------------------------------G-----AATCCATGGAAATGGAGGAG-----------------------CGA--CACAGCGGACGCTCGCACT-----------------ACGGCGG
droEle1 scf7180000491006:115391-115589 - CGCCGCCG---CCACGCTTCTT------TTCCACCTTCGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCTG----------TGGC----GACGCTGA----CAAGGCG----CAGCATGCACCA-----------------------------------------------------GCAGC---AGCAGCAGCAGCAACAACAT------TT-----------------------------------------GCAGCAGCAGCAACATCACCA---------------------------GCTGCCGCGCCAA-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
droRho1 scf7180000762169:352079-352283 + CGCCGCCG---CCGCGCTTCTT------TTCCACCTTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CGAGGCG----CAGCATGCACCA-----------------------------------------------------GCAGC---AGCAGCAACACCAGCAACATCAGCAACA-----------------------------------------TCAGCAGCAGCAACATCACCA---------------------------GCTGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
droBia1 scf7180000302421:476028-476202 + CCCCGCCG---CCGCGCTTCTT------CTCCACCTTCGGCTACGAG----CCGTCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CACGGCG----CAGCATGCACCA-----------------------------------------------------CCAGC---A-----------------------------------------------------------------------GCAGCAGCAGCACCACCA---------------------------GCTGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
droTak1 scf7180000415812:123121-123304 - CCCCGCCG---CAGCGCTTCTT------CTCCACCTTTGGCTACGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGACG----CAGCATGCATCA-----------------------------------------------------GCAGC---ATCCGCA--------------------------------------------------------------GCAGCAGCAGCAACATCACCA---------------------------GCTGCCTCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCATT-----------------ACGGCGG
droEug1 scf7180000408958:180186-180399 - CCCCACCG---CCACGGTTCTT------CTCTACCTTTGGCTATGAG----CCATCGGGA---TCAC---------------------------------------CATCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-----------------------------------------------------GCAGC---AGCAGCAGCAGCAGCAACAGCAA-----CATCATCACCAG------CAGC---------------------AGCAGCAGCAACATCACCA---------------------------GCTGCCTCGCCAA-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGTCGTTCGCACT-----------------ACGGTGG
dm3 chrX:13416972-13417140 + CCCCGCCA---CCGCGATTCTT------CTCCACCTTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAA-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
droSim2 x:12753707-12753875 + CCCCGCCA---CCGCGCTTCTT------CTCCACCTTCGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
droSec2 scaffold_20:49716-49884 + CCCCGCCA---CCGCGCTTCTT------CTCCACCTTCGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
droYak3 3R:11738219-11738451 + CGCCGCCG---CCTCTGC-------------CTCCGCCAGC---------------GTTT---CAGC---------------------------------------CAG-----------------------------------------------CA----------------GCAGCAGTAACAACAACAACAGCAGCAA--CACGATCGCTGGAAGCAAC---ACAAGCA---------ACA--------------CCAACAA----------CAGCAGCAGCAGTCCCAGC--AGCAGCAGCAACAACAACA---------------------------GCAATCTCAACTT-----------------------------------G-----AG----------CGGAGGATCCCTATCGCCGAGCCATTTGAGCCAA--CATCTGGGCCAATCGCCCCACTCACCCGTCTCCTCATCGTCGC
droEre2 scaffold_4690:13463642-13463813 - CCCCGCCA---CCGCGCTTCTT------CTCCACCTTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-----------------------------------------------------GC-----------------------------------------------------------------------------AGCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGG
dp5 2:26236292-26236531 - CACTTCTG--ACCGAGACTTTTGAGGCATTCAACATTTGTCGCTTGT----CCATTG---------------------------------------------------CAGA----------TGGA----AACGCAGA----CAA--CG----CAGCA-GCAACA---------------GCAGCAGCAGCAGCAGCAACAA-----T---TGCAACA---GCAGCAACATCA---------A-----------CAGCAACAACAG------CAGC---------------------AGCAGCAGCAACAACAGCA------------------------ACAGCAGCAACAACAG------CAGCAGGTCCAGGTCCTGACCAAGCAGCAG-----ATCCCATTGATAGACAAGAT-----------------------CAA--GCTAGAGGCC---------------------------------
droPer2 scaffold_17:512293-512515 - CGCCTCCA---CCACGGTTCTT------CTCCACTTTCGGCTACGAG----CCGGCGCCCCACGGCCAAGGATCACCATCGCTGCCGCAGTCCACTCCGCCACCGCCGGTGG----------TGGG----GACACTGA----CACGACG----CAGCATGCAGCA-----------------------------------------------------TCAGC-----------------------------------------------------------------------------AACAGCAACAGCAGCA---------------------------GATGCAGCAGCAAATG---CATCCC-----------------------G-----AGTCGCTAGAGCTGGAGGAG-----------------------CGA--CATAGCGGCCGTTCGCATT-----------------ACGGCGG
droWil2 scf2_1100000004837:1588624-1588830 - CC--ACCACCGC----------------------------CCATGGGTGGTCCACCGGGA---ATGC---------------------------------------AAGGAG----------TACC----ACCACCAA----CGCAG---------CA----------------GCAGCAGCAACAACAACAGCAGCAGCAA--C------AGCAGCA---GCAACAACAGCA---------G-----------CA---GCAACAG----------CAGCAGCAAC-----------AGCAGCAGCAACAACAGCA------------------------------ACAACAGCAG---CAACAGCC--------------------------------GCCAT-CAACTGGTACAC-----------------------CGC--CACAGTGCTCG---ACACC-----------------ACCAGCT
droVir3 scaffold_12875:4529452-4529665 + AGCCGCCG---CCGCAGCTGAC------CTGGGCCAAGGAGGATCTG----CCGAC---------GC---------------------------------------CGGCCAA--------------------GCAG-------------------CA----------------GC-GCAGTCGCAGCAATCATGGCGAGC-ATCACAATCATCACCATCATC---ATCAGCA---------GCACCAGCAACA-----------------------------------------GCAGCAGCAGCAGCCTCACCA---------------------------GCAGCAGCATTCG------CATCAGCACA----------GCAA----------------TGGCAGCTCGCG--G-----------------------AAG--CGCAACAGACGCGCGCCAC-----------------TGAGCGG
droMoj3 scaffold_6540:19374482-19374705 + CGGCCGCG--GCC------TGC---------------------------------CGCGACCCGCGCGAGG-----------------------------------------------------------GGCCCTTGCGCATGCAGCG----TAGCATG---------------------TCGACGCGATCG--GTGA---CGCGTAAACAGTACCAGCAGC---AACAGCAGCAGCAGCAACAG------AA-----------------------------------------GCAACAGCAGCAACACAAGCA---------------------------ACAACTGCAGCAG---GAGCAGCAGTCTT----------CGAGTGGCCGCTATGCCTTGGTGCCACTGGAGGAT-----------------------CTAGGCGCCGTGGCCAGTCGCT-------------------ATGCC--
droGri2 scaffold_15112:5065270-5065470 - CCACC--T---CCTCATC-------------------------------------TGGGA---GCGG---------------------------------------CGGGCG----------CAGT----GGCGCTAACA--CACGCTCTGGTCAGCA----GCAGCAGCAGCAGCAGC------------ATCA--------------------------GCAGCAGCAGCA---G-----------------CA---TCAGCAGCAGCAGCAGC---------------------ATCAGCAGCATCAACAACAGCAGCATCGGCAGCAGCAGCAGCATCAGCAGCAGCATCAG------CAGC-------------------------------------------------AG-----------------------CA----AAAACGGCAGCACCTACA-----------------GCAGC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGCCTCCG---CCGAGATTCTT------CTCCACCTTCGGCTATGAG----CCATC---------GC---------------------------------------CGGGCGTGGGGCA---TGGA--AGCACGTTGA----CACGGCG----CAGCATGCAACATCCCCAGCAACATC------------CCCA--------------------------GCAGCAGCAGCA---G-----------------CA---GCAGCAGCAGCAGCAGC---------------------AGCAGCAGCAACAACAGCAGATGATT---------------------GTGCCGCGCCAG-----------------------------------G-----AGTCCCTGGAGCTGGAGGAG-----------------------CGG--CACAGTGGACGTTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCAGA..........................................................................................................................................................................1890.222020000
.....................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC---------------------AGCAGCA........................................................................................................................................................................................22200.204000004
..................................................................................................................................................................................................................................AGCAGCA---G-----------------CA---GCAGCAGCAGCA.........................................................................................................................................................................................................................22200.204000004
........................................................................................................................................................................................................................................A---G-----------------CA---GCAGCAGCAGCAGCAGC---------------------A..............................................................................................................................................................................................22200.204000004
.....................................................................................................................................................................................................................................AGCA---G-----------------CA---GCAGCAGCAGCAGCA......................................................................................................................................................................................................................22200.204000004
...............................................................................................................................................................................................................................................................A---GCAGCAGCAGCAGCAGC---------------------AGCA...........................................................................................................................................................................................22200.204000004
........................................................................................................................................................................................................................................................................AGCAGCAGCAGC---------------------AGCAGCAGCA.....................................................................................................................................................................................22200.204000004
................................................................................................................................................................................ATC------------CCCA--------------------------GCAGCAGCAGCA---............................................................................................................................................................................................................................................................1990.111000001
........................................................................................................................................................................................................................................A---G-----------------CA---GCAGCAGCAGCAGCAGC---------------------AGC............................................................................................................................................................................................24200.102020000
..............................................................................................................................................................................................................................CAGCAGCAGCA---G-----------------CA---GCAGCAGCAG...........................................................................................................................................................................................................................24200.102200000
.................................................................................................................................................................................................................................CAGCAGCA---G-----------------CA---GCAGCAGCAGCAG........................................................................................................................................................................................................................24200.102200000
...............................................................................................................................................................................................................................................................A---GCAGCAGCAGCAGCAGC---------------------AGCAGC.........................................................................................................................................................................................24200.102020000
.....................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC---------------------AGCAGCAGC......................................................................................................................................................................................24200.102020000
...................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGC---------------------A..............................................................................................................................................................................................18200.051000001
..........................................................................................................................................................................................................................................................................CAGCAGCAGC---------------------AGCAGCAGC......................................................................................................................................................................................19200.051000001
.......................................................................................................................................................................................................................................................................CAGCAGCAGCAGC---------------------AGCAGC.........................................................................................................................................................................................19200.051000001
......................................................................................................................................................................................................................................................................GCAGCAGCAGCAGC---------------------AGCA...........................................................................................................................................................................................18200.051000001
............................................................................................................................................................................................................................................G-----------------CA---GCAGCAGCAGCAGCA......................................................................................................................................................................................................................18200.051000001
.........................................................................................................................................................................................................................................................................GCAGCAGCAGC---------------------AGCAGCA........................................................................................................................................................................................18200.051000001
.............................................................................................................................................................................................................................GCAGCAGCAGCA---G-----------------CA---GCAGCA...............................................................................................................................................................................................................................21200.051010000
.............................................................................................................................................................................................................................................................................CAGCAGC---------------------AGCAGCAGCAACAACAGC.............................................................................................................................................................................25200.051010000
........................................................................................................................................................................................................................................................................AGCAGCAGCAGC---------------------AGCAGCAGCAAC...................................................................................................................................................................................24200.051010000
.......................................................................................................................................................................................................................................................................CAGCAGCAGCAGC---------------------AGCAGCAGCAAC...................................................................................................................................................................................25200.051010000
.......................................................................................................................................................................................................................................CA---G-----------------CA---GCAGCAGCAGCAGC.......................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................................GCAGCAGC---------------------AGCAGCAGCA.....................................................................................................................................................................................18200.051000001
..............................................................................................................................................................................................................................................................................AGCAGC---------------------AGCAGCAGCAACAA.................................................................................................................................................................................20200.051000001
....................................................................................................................................................................................................................................CAGCA---G-----------------CA---GCAGCAGCAGC..........................................................................................................................................................................................................................19200.051010000
droBip1
CGCCACCG---CCGAGATTCTT------CTCCACCTTCGGCTATGAG----CCGTC---------GC---------------------------------------CGGCCGTAGGGCACGGAG-----GTACGCTGA----CACGGCG----CAGCATGCAACA-----------------------------------------------------TCCCC---A-----------------------------------------------------------------------GCAGCAGCAGCAACAGCAGATGATT---------------------GTGCCGCGCCAG-----------------------------------G-----AGTCCCTGGAGCTGGAGGAG-----------------------CGG--CACAGTGGACGTTCGCACT-----------------ATGGCGGSizeHit CountTotal NormTotal
No Reads
droKik1
CGCCGCCG---CCGCGATTCTT------CTCCACATTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGTCGG----------CGGCTG-GGACACTGA----CAAGGCG----CAGCATGCAGCA-----------------------------------------------------GCAAC---AGCAGCA------GCAACAGCAGCAACA-----------------------------------------GCAGCAGCAGCAACATCACCA---GCA---------------------GCTGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGCTGGAGGAG-----------------------CGA--CACAGCCTTCGCTCGCACT-----------------ACGGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
CGCCGCCG---CCGCGCTTCTT------CTCCACCTTTGGCTACGAG----CCATCGGGA---TCGC---------------------------------------CATCGG----------TGGC----AACGCTGA----CGAGGCG----CAGCATGCACCA-----------------------------------------------------TCCGCAGCAACAGCA---GCAGCAACAACACCTGCA-----------------------------------------ACAGCAGCAGCAACATAACCA---------------------------GCTGCCCCGCCAG-----------------------------------G-----AATCCATGGAAATGGAGGAG-----------------------CGA--CACAGCGGACGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotal
No Reads
droEle1
CGCCGCCG---CCACGCTTCTT------TTCCACCTTCGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCTG----------TGGC----GACGCTGA----CAAGGCG----CAGCATGCACCA-----------------------------------------------------GCAGC---AGCAGCAGCAGCAACAACAT------TT-----------------------------------------GCAGCAGCAGCAACATCACCA---------------------------GCTGCCGCGCCAA-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotal
No Reads
droRho1
CGCCGCCG---CCGCGCTTCTT------TTCCACCTTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CGAGGCG----CAGCATGCACCA-----------------------------------------------------GCAGC---AGCAGCAACACCAGCAACATCAGCAACA-----------------------------------------TCAGCAGCAGCAACATCACCA---------------------------GCTGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotal
No Reads
droBia1
CCCCGCCG---CCGCGCTTCTT------CTCCACCTTCGGCTACGAG----CCGTCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CACGGCG----CAGCATGCACCA-----------------------------------------------------CCAGC---A-----------------------------------------------------------------------GCAGCAGCAGCACCACCA---------------------------GCTGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotal
No Reads
droTak1
CCCCGCCG---CAGCGCTTCTT------CTCCACCTTTGGCTACGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGACG----CAGCATGCATCA-----------------------------------------------------GCAGC---ATCCGCA--------------------------------------------------------------GCAGCAGCAGCAACATCACCA---------------------------GCTGCCTCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCATT-----------------ACGGCGGSizeHit CountTotal NormTotal
No Reads
droEug1
CCCCACCG---CCACGGTTCTT------CTCTACCTTTGGCTATGAG----CCATCGGGA---TCAC---------------------------------------CATCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-----------------------------------------------------GCAGC---AGCAGCAGCAGCAGCAACAGCAA-----CATCATCACCAG------CAGC---------------------AGCAGCAGCAACATCACCA---------------------------GCTGCCTCGCCAA-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGTCGTTCGCACT-----------------ACGGTGGSizeHit CountTotal NormTotal
No Reads
dm3
CCCCGCCA---CCGCGATTCTT------CTCCACCTTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAA-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCATGGAGATGGAGGAG-----------------------CGA--CACAGC.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGGAGGAG-----------------------CGA--CACAGCGGC..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
droSim2
CCCCGCCA---CCGCGCTTCTT------CTCCACCTTCGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CCCCGCCA---CCGCGCTTCTT------CTCCACCTTCGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................GAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------T.............................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....................................................................................................................................................................A-------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAACATCCGCA---------------------------.................................................................................................................................................1960.1710010
droYak3
CGCCGCCG---CCTCTGC-------------CTCCGCCAGC---------------GTTT---CAGC---------------------------------------CAG-----------------------------------------------CA----------------GCAGCAGTAACAACAACAACAGCAGCAA--CACGATCGCTGGAAGCAAC---ACAAGCA---------ACA--------------CCAACAA----------CAGCAGCAGCAGTCCCAGC--AGCAGCAGCAACAACAACA---------------------------GCAATCTCAACTT-----------------------------------G-----AG----------CGGAGGATCCCTATCGCCGAGCCATTTGAGCCAA--CATCTGGGCCAATCGCCCCACTCACCCGTCTCCTCATCGTCGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCGCCCCACTCACCCGTCTCC..........2511.00100100000000
.....................................................................................................................................................................................................................................................................AACAA----------CAGCAGCAGCAGTCC.....................................................................................................................................................................................................2021.00201000010000
.....................................................................................................................................................................................................................................................................................AGCAGCAGCAGTCCCAGC--AGC............................................................................................................................................................................................2120.50101000000000
.....................................................................................................................................................................................................................................................................AACAA----------CAGCAGCAGCAGTCCC....................................................................................................................................................................................................2120.50100000010000
...................................................................................................................................................................................................................................................CA--------------CCAACAA----------CAGCAGCAGCA.........................................................................................................................................................................................................2080.13100000010000
..........................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACA---------------------------GC...............................................................................................................................................20200.05101000000000
..................................................................................................................................................................................................................................................................................................CCAGC--AGCAGCAGCAACA..................................................................................................................................................................................18200.05100010000000
.........................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACA---------------------------GCA..............................................................................................................................................22200.05101000000000
droEre2
CCCCGCCA---CCGCGCTTCTT------CTCCACCTTTGGCTATGAG----CCATCGGGA---TCGC---------------------------------------CGGCGG----------TGGC----AACGCTGA----CAAGGCG----CAGCATGCACCA-----------------------------------------------------GC-----------------------------------------------------------------------------AGCAGCAGCAACATCCGCA---------------------------GATGCCGCGCCAG-----------------------------------G-----AGTCCATGGAGATGGAGGAG-----------------------CGA--CACAGCGGCCGCTCGCACT-----------------ACGGCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CACTTCTG--ACCGAGACTTTTGAGGCATTCAACATTTGTCGCTTGT----CCATTG---------------------------------------------------CAGA----------TGGA----AACGCAGA----CAA--CG----CAGCA-GCAACA---------------GCAGCAGCAGCAGCAGCAACAA-----T---TGCAACA---GCAGCAACATCA---------A-----------CAGCAACAACAG------CAGC---------------------AGCAGCAGCAACAACAGCA------------------------ACAGCAGCAACAACAG------CAGCAGGTCCAGGTCCTGACCAAGCAGCAG-----ATCCCATTGATAGACAAGAT-----------------------CAA--GCTAGAGGCC---------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................GATAGACAAGAT-----------------------CAA--GCTAGAGGCC---------------------------------2511.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGTCCTGACCAAGCAGCAG-----ATCCC......................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGGTCCAGGTCCTGAC..........................................................................................................2111.0010010000000
............................................................................................................................................................................................................................................................................................................................................................AACAACAG------CAGCAGGTCCAGGTCCT.............................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................GACCAAGCAGCAG-----ATCCCATTGATA...............................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATTGATAGACAAGAT-----------------------CAA--GCTAGA.....................................2911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................CAGCAGGTCCAGGTCCTGACCAAGCAGC..................................................................................................2811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATTGATAGACAAGAT-----------------------................................................2011.0010100000000
.......................................................................................................................................AGA----CAA--CG----CAGCA-GCAACA---------------GCA.................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................GGTCCAGGTCCTGACCAAGCAGCAG-----...........................................................................................2511.0010100000000
..............................................................................................................GA----------TGGA----AACGCAGA----CAA--CG----CAGC...........................................................................................................................................................................................................................................................................................................................................2311.0010010000000
...............................................................................................................................................................................................................................AGCAACATCA---------A-----------CAGCAACAACAG------CAGC---------------------...............................................................................................................................................................................................2720.5010100000000
................................................................................................................................................................................................GCAGCAACAA-----T---TGCAACA---GC.........................................................................................................................................................................................................................................................................2030.3310100000000
....................................................................................................................................................................................................................GCAACA---GCAGCAACATCA---------A-----------CA........................................................................................................................................................................................................................................2130.3310100000000
.....................................................................................................................................................................................................................................ATCA---------A-----------CAGCAACAACAG------CAGC---------------------AG.............................................................................................................................................................................................2340.2510100000000
.................................................................................................................................................................................................................................................................................................................CAACAACAGCA------------------------ACAGCAGCAACAACA.....................................................................................................................................2680.1310100000000
...................................................................................................................................................................................................................................................................ACAACAG------CAGC---------------------AGCAGCAGC......................................................................................................................................................................................20200.1020200000000
...........................................................................................................................................................GCA-GCAACA---------------GCAGCAGCAGCAGCAGCAAC................................................................................................................................................................................................................................................................................................29190.0510010000000
...............................................................................................................................................................................................................................................................................................................AGCAACAACAGCA------------------------ACAGCAGC............................................................................................................................................21200.0510000100000
............................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCA------------------------ACA.................................................................................................................................................19200.0510100000000
..................................................................................................................................................................................................................................................A-----------CAGCAACAACAG------CAGC---------------------A..............................................................................................................................................................................................18200.0510000100000
.........................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCA------------------------ACAGCA..............................................................................................................................................25200.0510000100000
..................................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------ACAGCAGCAAC.........................................................................................................................................21200.0510010000000
..............................................................................................................................................................................................................................................................CAGCAACAACAG------CAGC---------------------AGCAGCA........................................................................................................................................................................................23200.0510000001000
..................................................................................................................................................................................................................................................................................GC---------------------AGCAGCAGCAACAACAGCA------------------------ACAGCA..............................................................................................................................................27200.0510100000000
...................................................................................................................................................................................................................................................................................C---------------------AGCAGCAGCAACAACAGCA------------------------ACA.................................................................................................................................................23200.0510100000000
..................................................................................................................................................................................................................................................................AACAACAG------CAGC---------------------AGCAGCAGC......................................................................................................................................................................................21200.0510000100000
.................................................................................................................................................................................................................................................................................................................CAACAACAGCA------------------------ACAGCAGCA...........................................................................................................................................20200.0510100000000
...................................................................................................................................................................................................................................................................ACAACAG------CAGC---------------------AGCAGCAG.......................................................................................................................................................................................19200.0510100000000
..................................................................................................................................................................................................................................................................AACAACAG------CAGC---------------------AGCAGCAGCA.....................................................................................................................................................................................22200.0510100000000
droPer2
CGCCTCCA---CCACGGTTCTT------CTCCACTTTCGGCTACGAG----CCGGCGCCCCACGGCCAAGGATCACCATCGCTGCCGCAGTCCACTCCGCCACCGCCGGTGG----------TGGG----GACACTGA----CACGACG----CAGCATGCAGCA-----------------------------------------------------TCAGC-----------------------------------------------------------------------------AACAGCAACAGCAGCA---------------------------GATGCAGCAGCAAATG---CATCCC-----------------------G-----AGTCGCTAGAGCTGGAGGAG-----------------------CGA--CATAGCGGCCGTTCGCATT-----------------ACGGCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................ATCGCTGCCGCAGTCCACT........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droWil2
CC--ACCACCGC----------------------------CCATGGGTGGTCCACCGGGA---ATGC---------------------------------------AAGGAG----------TACC----ACCACCAA----CGCAG---------CA----------------GCAGCAGCAACAACAACAGCAGCAGCAA--C------AGCAGCA---GCAACAACAGCA---------G-----------CA---GCAACAG----------CAGCAGCAAC-----------AGCAGCAGCAACAACAGCA------------------------------ACAACAGCAG---CAACAGCC--------------------------------GCCAT-CAACTGGTACAC-----------------------CGC--CACAGTGCTCG---ACACC-----------------ACCAGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................GTCCACCGGGA---ATGC---------------------------------------AAGGA.........................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................ACCGGGA---ATGC---------------------------------------AAGGAG----------TACC----A.....................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...........................................TGGGTGGTCCACCGGGA---ATG......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
........................................................................................................................................................................................................................................................................................................................................................................AACAGCC--------------------------------GCCAT-CAACTG.............................................................................1811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................CAT-CAACTGGTACAC-----------------------CGC--CACAGT.....................................2411.00100010
..................................................................................................................................................................................................AGCAGCAA--C------AGCAGCA---GCAACAACAGC................................................................................................................................................................................................................................................................27100.10101000
....................................................................................................................................................................................................................................CAGCA---------G-----------CA---GCAACAG----------CAGCA...............................................................................................................................................................................................................20200.10200020
.....................................................................................................................................................................................................................................................................................AGCAGCAAC-----------AGCAGCAGCAACAACAGC.............................................................................................................................................................................27100.10101000
...................................................................................................................................................................................AGCAACAACAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................22200.10200020
.......................................................................................................................................................................................................................................................................CAG----------CAGCAGCAAC-----------AGCAGCA........................................................................................................................................................................................20200.10200020
........................................................................................................................................................................................................................................................................................AGCAAC-----------AGCAGCAGCAACAACA...............................................................................................................................................................................22200.10200002
.....................................................................................................................................................................................................AGCAA--C------AGCAGCA---GCAACAACA..................................................................................................................................................................................................................................................................22200.10200002
...................................................................................................................................................................................................................................................................................................................ACAACAGCA------------------------------ACAACAGCAG---CAA..............................................................................................................................22120.08100010
............................................................................................................................................................................................................................................................................................AC-----------AGCAGCAGCAACAACAGCA------------------------------ACAA..........................................................................................................................................25150.07100010
........................................................................................................................................................................................................................................A---------G-----------CA---GCAACAG----------CAGCAGCAAC-----------AGCA...........................................................................................................................................................................................25170.06100010
........................................................................................................................................................................................................................................A---------G-----------CA---GCAACAG----------CAGCAGCAAC-----------AGC............................................................................................................................................................................................24190.05101000
.........................................................................................................................................................................................................A--C------AGCAGCA---GCAACAACAGCA---------G-----------CA---GCA..................................................................................................................................................................................................................................27190.05100010
...............................................................................................................................................................................................................................................................A---GCAACAG----------CAGCAGCAAC-----------AGC............................................................................................................................................................................................21200.05100010
...........................................................................................................................................................................................................................................................................................AAC-----------AGCAGCAGCAACAACAGCA------------------------------ACA...........................................................................................................................................25200.05100100
...................................................................................................................................................................................AGCAACAACAACAGCAGCAGC................................................................................................................................................................................................................................................................................................21200.05100010
..................................................................................................................................................................................................................................AACAGCA---------G-----------CA---GCAACAG----------CA..................................................................................................................................................................................................................19200.05100001
.........................................................................................................................................................................................................A--C------AGCAGCA---GCAACAACAGCA---------G-----------CA---.....................................................................................................................................................................................................................................24200.05100010
............................................................................................................................................................................................................C------AGCAGCA---GCAACAACAGCA---------G-----------..........................................................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................................................................................................................................CAACAACAGCA------------------------------ACAACAGCAG---CA...............................................................................................................................23200.05100001
........................................................................................................................................................................................................AA--C------AGCAGCA---GCAACAACAGCA---------G-----------CA---.....................................................................................................................................................................................................................................25200.05100010
.................................................................................................................................................................................................................................CAACAGCA---------G-----------CA---GCAACAG----------C...................................................................................................................................................................................................................19200.05100001
.............................................................................................................................................................A----------------GCAGCAGCAACAACAACAGC......................................................................................................................................................................................................................................................................................................21200.05100001
.........................................................................................................................................................................................AACAACAGCAGCAGCAA--C------AGCA.................................................................................................................................................................................................................................................................................22200.05101000
droVir3
AGCCGCCG---CCGCAGCTGAC------CTGGGCCAAGGAGGATCTG----CCGAC---------GC---------------------------------------CGGCCAA--------------------GCAG-------------------CA----------------GC-GCAGTCGCAGCAATCATGGCGAGC-ATCACAATCATCACCATCATC---ATCAGCA---------GCACCAGCAACA-----------------------------------------GCAGCAGCAGCAGCCTCACCA---------------------------GCAGCAGCATTCG------CATCAGCACA----------GCAA----------------TGGCAGCTCGCG--G-----------------------AAG--CGCAACAGACGCGCGCCAC-----------------TGAGCGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................GATCTG----CCGAC---------GC---------------------------------------CGGCCAA--------------------GCAG-------------------CA----------------..........................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................G-------------------CA----------------GC-GCAGTCGCAGCAATCATGG....................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................A---------------------------GCAGCAGCATTCG------CATCAGCACA----------GCA.......................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................ATCACAATCATCACCATCAT..........................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................AGCAATCATGGCGAGC-ATCACA........................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................G-------------------CA----------------GC-GCAGTCGCAGCAATCATGGC...................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CACCA---------------------------GCAGCAGCATTCG------CATCAGCA......................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
...............AGCTGAC------CTGGGCCAAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................TCG------CATCAGCACA----------GCAA----------------TGGCAGCT..............................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................CTG----CCGAC---------GC---------------------------------------CGGCCAA--------------------GCAG-------------------CA----------------..........................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCGCG--G-----------------------AAG--CGCAACAGA..................................2211.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................................CA-----------------------------------------GCAGCAGCAGCAGCCTCACC.............................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................A----------------TGGCAGCTCGCG--G-----------------------AAG--CGCA.......................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCTCGCG--G-----------------------AAG--CG.........................................1811.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................A--------------------GCAG-------------------CA----------------GC-GCAGTCGCAGC............................................................................................................................................................................................................................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCACCATCATC---ATCAGCA---------GCA...................................................................................................................................................................................................................................................2140.251000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................CATCACCATCATC---ATCAGCA---------GC....................................................................................................................................................................................................................................................2240.251000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AGCA---------GCACCAGCAACA-----------------------------------------GCAGC............................................................................................................................................................................................21120.081000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CCAGCAACA-----------------------------------------GCAGCAGCAGCA.....................................................................................................................................................................................21200.051000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CCAGCAACA-----------------------------------------GCAGCAGCAG.......................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
CGGCCGCG--GCC------TGC---------------------------------CGCGACCCGCGCGAGG-----------------------------------------------------------GGCCCTTGCGCATGCAGCG----TAGCATG---------------------TCGACGCGATCG--GTGA---CGCGTAAACAGTACCAGCAGC---AACAGCAGCAGCAGCAACAG------AA-----------------------------------------GCAACAGCAGCAACACAAGCA---------------------------ACAACTGCAGCAG---GAGCAGCAGTCTT----------CGAGTGGCCGCTATGCCTTGGTGCCACTGGAGGAT-----------------------CTAGGCGCCGTGGCCAGTCGCT-------------------ATGCC--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCCGTGGCCAGTCGCT-------------------A......2111.001000010
.........................................................................................................................................................................................................................AGCAGC---AACAGCAGCAGCA.........................................................................................................................................................................................................................................................19200.306600000
droGri2
CCACC--T---CCTCATC-------------------------------------TGGGA---GCGG---------------------------------------CGGGCG----------CAGT----GGCGCTAACA--CACGCTCTGGTCAGCA----GCAGCAGCAGCAGCAGC------------ATCA--------------------------GCAGCAGCAGCA---G-----------------CA---TCAGCAGCAGCAGCAGC---------------------ATCAGCAGCATCAACAACAGCAGCATCGGCAGCAGCAGCAGCATCAGCAGCAGCATCAG------CAGC-------------------------------------------------AG-----------------------CA----AAAACGGCAGCACCTACA-----------------GCAGC--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................ATCA--------------------------GCAGCAGCAGCA---G-----------------CA---TCA..................................................................................................................................................................................................................................22200.05110
...............................................................................................................................................................................................................................................................A---TCAGCAGCAGCAGCAGC---------------------ATCA...........................................................................................................................................................................................22200.05110

Generated: 05/18/2015 at 02:22 AM