ID:

dan_1527

 Coordinate:

scaffold_13248:1856578-1856825 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_6514:8]; exon [dana_GLEANR_6514:9]; CDS [Dana\GF22554-cds]; CDS [Dana\GF22554-cds]; intron [Dana\GF22554-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCTATCCTCGCGCTTCAGCGTGGGCAGCAGCGGCCTGCCACGGGACGAGGTAAGGATCCCAGCTTGTGGAGTAGATTTGAATTTGTGTTTTTGGCTTTTTGGTTGTAGAATGCTTGTGTCCATGTCCATGTGGCACTGGAAGAAGGTATTGTTCCGAATTAGAAAGGGTCAGCTATACCTATGCCAGTGCCATCGTCCAGTGTCTTAGGTGAGCTGTGTTTCGTCCATGTCCGTTCTCCGTCCTCCGTCCCAGTCGTGTCTAACAAGTCATTACTGAGACAGCATCCCATCCAACAGCTGCCGCGTCGCAAGCGGCCGAATCTGCTGACCGGAATGCAGCGCCGTCG
**************************************************...(((((...(((.((((((..((((..................((((((((((....(((((((...((((((((.....)))).))))...)))))))......))))))))))...(((((.((((((...((.((........)).))...))))))))))).))))..))))))...)))....)))))..(((.((((.(((.((....)).))).)))).))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M058
embryo
 M044
female body
 V106
head
 V105
male body
...............TCAGCGTGGGCAGCAGCGGCCTGC..................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................GCAATTGAAGAAGGTATAGTTC................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0
..................................................................................................................................................................CACAGGGTCAGCTATACCT....................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GCGTCGCAAGCGGCCGAATCTGCTGAC.................. 27 0 1 1.00 1 0 0 1 0 0
...............................................................................................................................................................................................................AGGTGAGCTGGGTTTCGGCC......................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
....................................................ACGGATCCAAGCTGGTGGAGT................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.................................................GGAAAGGGTCCCAGCTTGGGG...................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.........................CATGAGCGGCCTGCCACGGGG.............................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0
...............CCAGCGCGGGGAGCAGCGGCC........................................................................................................................................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0
........................................................ATCCCAGCTTTAGGAGTA.................................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0
........................................................................................................................................................................................................................................CGTTCCCCGGCCTCCGCCCCA............................................................................................... 21 3 5 0.20 1 0 0 0 0 1
...................................................................................................................................................................................................GGCCAGAGTCTTAGGTGAAC..................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0
...................................................................................................................................TGGCGCTGGAAGAAGGAA....................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1

Anti-sense strand reads

AGGATAGGAGCGCGAAGTCGCACCCGTCGTCGCCGGACGGTGCCCTGCTCCATTCCTAGGGTCGAACACCTCATCTAAACTTAAACACAAAAACCGAAAAACCAACATCTTACGAACACAGGTACAGGTACACCGTGACCTTCTTCCATAACAAGGCTTAATCTTTCCCAGTCGATATGGATACGGTCACGGTAGCAGGTCACAGAATCCACTCGACACAAAGCAGGTACAGGCAAGAGGCAGGAGGCAGGGTCAGCACAGATTGTTCAGTAATGACTCTGTCGTAGGGTAGGTTGTCGACGGCGCAGCGTTCGCCGGCTTAGACGACTGGCCTTACGTCGCGGCAGC
**************************************************...(((((...(((.((((((..((((..................((((((((((....(((((((...((((((((.....)))).))))...)))))))......))))))))))...(((((.((((((...((.((........)).))...))))))))))).))))..))))))...)))....)))))..(((.((((.(((.((....)).))).)))).))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V105
male body		 M058
embryo
 V039
embryo
 M044
female body
 V106
head
...............................................................................................................................................................................................................................CGGGAACAGGCAAGAGGCAGGA....................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGTACCGTCAAGAGGCAGGA....................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGAATAGGCAAGAGGCAGGA....................................................................................................... 20 2 3 1.00 3 3 0 0 0 0 0
.................................................................................................................................................................................................................................GGAACAGGCAAGAGGCAGGT....................................................................................................... 20 2 2 1.00 2 2 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAAGAGTCAGGAGGCAGGG................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGAAGAGGCAGGAGGCAGGT................................................................................................ 21 2 2 1.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................CTGGAACAGGCAAGAGGCAGGA....................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AGCGTCAGGAGGCAGGGTC.............................................................................................. 19 2 2 1.00 2 1 1 0 0 0 0
.......................................................................................................................................................................................................................................GGCAATAGTCAGGAGGCAGGG................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................AGGAATAGGCGAGAGGCAGGA....................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGTATTGGCAAGAGGCAGGA....................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAATAGGCAGGAGGCAGGT................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................................................AGGGATAGTCAAGAGGCAGGA....................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GCGGGAACAGTCAAGAGGCAGGA....................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GAAATAGGCAGGAGGCAGGG................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGAACAGTCAAGAGGCAGGA....................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................CGGCAATAGTCAGGAGGCAGGG................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................CCGGTATAGTCAAGAGGCAGGA....................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GTACAGTCAAGAGGCAGGG....................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GCCAATAGTCAGGAGGCAGGG................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GCAATAGTCAGGAGGCAGG................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................AGGCAAGGGGCTTGAGGCAGGG................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................CAAGAGGCAGGAGGCAGGT................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GAACAGTCAAGAGGCAGGA....................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAAGAGTCATGAGGCAGGT................................................................................................ 21 3 8 0.38 3 3 0 0 0 0 0
.................................................................................................................................................................................................................................GGCACAGTCAAGAGGCAGGG....................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................AGGCAATAGTCAAGAGGCAGGG................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................CAGGTATAGACAAGAGGCAGGT....................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................CTGGTACAGTCAAGAGGCAGGT....................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................AGGCAATAGTCAGGAGGCAGGT................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0
...............................................................................CTTAACCACGAAAACCGAAA......................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0
................................................................................................................................................................................................................................GGGCACAGTCAAGAGGCAGGA....................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0
................................TCGGAGGGTTCCCTGCTCCA........................................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................GGCAAGAGTCAAGAGGCAGGG................................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGAAGAGTCACGAGGCAGGG................................................................................................ 21 3 7 0.29 2 2 0 0 0 0 0
...........................................................................................................................................................................................................................................AGCGGCAGGAGTCAGGGTCG............................................................................................. 20 3 7 0.29 2 0 1 0 0 0 1
......................................................................................................................................................................................................................................CGGGAAGAGTCAGGAGGCAGGG................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGGTACAGTCAAGAGGCAGGT....................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGTATAGGCAAGAGGCAGGT....................................................................................................... 20 2 4 0.25 1 0 0 0 0 1 0
................................................................................................................................................................................................................................GGGAACAGCCAAGAGGCAGGA....................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................................................................................................AGGCATAGGCAAGAGGCAGGT....................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CGGAACAGGCAAGAGGCAGGT....................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GTATCGGCAAGAGGCAGGA....................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AGAGTCAGGAGTCAGGGTC.............................................................................................. 19 2 13 0.23 3 3 0 0 0 0 0
..................................................................................AAACACCAAAACCGAAAAA....................................................................................................................................................................................................................................................... 19 1 5 0.20 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................CTGGTATAGTCAAGAGGCAGGA....................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GGAAGAGTAAGGAGGCAGGG................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
..........................................................................CTAGACTTAAGCACAAAAA............................................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................GCAAGTGTCACGAGGCAGGG................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................AGAGGGCGCAGCGTTCGC................................. 18 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGAATAGGCATGAGGCAGGG................................................................................................ 21 3 5 0.20 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GCAAGTGTCATGAGGCAGGG................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGTATAGTCAAGAGGCAGGA....................................................................................................... 20 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAATGGTCAGGAGGCAGGG................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAATAGTCAGGAGGCAGGC................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGGTATAGGCAAGAGGCAGGT....................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CGGTATAGTCAAGAGGCAGGA....................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGCACAGTCAAGAGACAGGA....................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGGAATAGGCAAGAGGCAGGA....................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AGTGTCAGGAGGCAGGGTCG............................................................................................. 20 3 14 0.14 2 0 0 0 0 2 0
.......................................................................................................................................................................................................................................GGGAATAGGCAGGAGGCAGGC................................................................................................ 21 3 7 0.14 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGAATAGGCACGAGGCAGGA....................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TATAGGCAAGAGGCAGGT....................................................................................................... 18 2 8 0.13 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................CGGGAAGAGGCAGGAGGCAGGC................................................................................................ 22 3 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GGAAGAGTCACGAGGCAGGG................................................................................................ 20 3 9 0.11 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GCAAGAGTCATGAGGCAGGT................................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAAGAGTCACGAGGCAGGC................................................................................................ 21 3 10 0.10 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTAAGAGTCAAGAGGCAGGG................................................................................................ 21 3 11 0.09 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGAACAGTCAAGAGGTAGGA....................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AGTGGCAGGAGTCAGGGTCG............................................................................................. 20 3 11 0.09 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................GCTATAGTCAAGAGGCAGGA....................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCAATAGGCAAGAGGAAGGG................................................................................................ 21 3 12 0.08 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGGACAGCCTAGAGGCAGGA....................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GCAATAGTCAGGAGGCAGGA................................................................................................ 20 3 16 0.06 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGAAAGTGGCAGGAGGCAGGA................................................................................................ 21 3 17 0.06 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGAAGTGGCACGAGGCAGG................................................................................................. 20 3 17 0.06 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................GGGAAGAGTCAGGAGGCAGGA................................................................................................ 21 3 19 0.05 1 1 0 0 0 0 0
......................................................................................ACAAACGCCGAAAAAGCAACA................................................................................................................................................................................................................................................. 21 3 19 0.05 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................................TGCGTCAGGAGGCAGGGTC.............................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GTATATGCAAGAGGCAGGT....................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGTATAGGCAAGAGGCGGGT....................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGAACAGTCAAGAGGCAAGA....................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GTTCTGTCGAAGGGTAGGTT..................................................... 20 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GTATAGGCAAGAGGAAGGT....................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................GGAAGAGTGAGGAGGCAGGG................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AGCGTCAGGAGGCAGGG................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AGCGCCAGGAGTCAGGGTC.............................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................................................................................................................................CAATAGCCAAGAGGCAGGG................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13248:1856528-1856875 + dan_1527 TCCTATCCTCGCGCTTCAGCGTGGGCAGCAGC---------------G---------------GCCTGCCACGGGACGAGGTAAGGATCCCA------G-----------------------------------------CTTGTGGAGTAGATTT--GAATTTGTGTT-TTTGGCTTTTTGGTTGTAGAATGCTTGTGTCCATGTCCATGTGGCACTGGAA-GAAGGTATTGTT-------------------------------------------------------------------------------------------------------------------CCGAATTAGAAAGGGTCAG----------------------------------------------------------------------------------CTA----TACCTATG----CC--------------------AGTGCCATCGTCCAGTGTCTTAGGTGAG---------------------------------------------------------------------CTGTGTTTCGTCCATGTCCGTTCT-----------CCGTCCTCC-----------------------------GTCCCA------------GTCG-TGT------------------------------------CT-----------AACAAGTCATTACTGAGACAG---CAT---C-------CCATCCAACAGCTGCCGC---GTCGCAAGCGGCCGAATCTGCTGACCGGAA---TGCAGCGCCGTCG---
droBip1 scf7180000395544:5172-5591 - TCCTGTCCTCGCGTTTCAGCGTCGGCAGCAGC---------------G---------------GCCTGCCACGGGACGAGGTAAGTCCAGGGTCCT-----TCCG--G--G--G----------------GCTGCTCTGGTTTGTGTAGTAGACTTGTGAGTATGTGTTTTTTGGCTATTTGGTTGTAGAATGCTTATGT------CCAACTGGCACTGGACGGAAGGTATAGTC-------------------------------------------------------------------------------------------------------------------ACGAATTAGAGCAGGACAGATATATACAATGGTC----TCGC---TCTAATTC--------------------------------------------GGTACTA----TACCAATG----A-------------------------------TACAGTGCCATTGTCGCTTAGTG------------------------------------ATGTCCAATGTT---------TCCAT-----------GTCCATGTGTCGTCC-----------------------------ATG--TCC------------GTCCTT------------GTCA-TGT-------------------CTAGCACGACTG---------AG---ATC-AGTCAGTAACGAGTCCA-GCCTCCTGG---CAACCTGTTTATCCAACAGCTGCCGC---GTCGCAAGCGGTCGAATCTGCTGACTGGAA---TGCAGCGCCGTCG---
droKik1 scf7180000302476:1998886-1999040 + TCCTCACAACACGGTTCAGCGTCGGCAGCAGC---------------G---------------GCCTGCCCCGGGACGAGGTAAGTTTCCG----------TCTG--G-----------------------------------------------------------------------------------------------------------------------------------A--AACAAGTAGAATTGTGAGATTCAATGTTTTGGTTGT--TGTTGGTAGATTGTGTA----T----GT-A----TGCCCATGTGCC------CACTCGAACACGA--------------------------------------------------TA-----------------------------------------------------------------------------------------------------------TAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454073:840660-840977 - TTCTTACGCAGCGTTTTAGCGTTGGCAGCAGC---------------G---------------GTTTGCCACGGGACGAGGTAAGTAAAAAG------AAA--------T-------------------------------------------------------------------------------------------------------------------------------CAA--TGTTGGTAGATATGTCATTTTCCATGTTTTGGTTGT-------GT----------------TCAAT-G----TGCTTTTGTTACAAAGAAATG------------------------------------------------------------------------------------------------------------------------------------------TAAGC-TAGTTAGTGGGCTATTGCTTTCGTTCAGT-------------------------------------------------------GTAAAGTGTGCCTCAGCTG------------------CCACGTCTCGTCC-----------------------------------TT------------GTCCAC------------TTCA-TGTTC-----------T-TTGTG-----TGGCTGTGTAGCTC------TGT-AGCCGGCAATTGAC---------TTGG---CA------ATCTCCCACAGCTGCCGC---GTCGTCAGCGGCCGAATCTTCTGACCGGCG---TGCACCGCCG------
droEle1 scf7180000491272:1673842-1673994 + TTCTCACCCAGCGTTTCAGCGTTGGCAGCAGC---------------A---------------CTCTGCCCCGGGACGAGGTAAGTCACAGAGCCACAGAGTTC--------------------------------------------------------------------------------------------------------------------------------GTGTCCAAGTGTTGAGTAGATTTGTGCCTTTCAATGTTTTGGTATTG-G-TT-TT-------GGC----TTGAGTT-G----TGCCCACATGACACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779835:8965-9116 - TCCTGACGCAGCGTTTCAGCGTTGGCAGCAGC---------------G---------------GTCTGCCCCGAGACGAGGTAAGTACGAAC--G--------------------------------------------------------------------------------------------------------------------------------GAAGGTTTCGTGCTCAA--GTTGAGTAGATTTGTGATTTTCAATGTTTTGGTTTTG--GTT-TT----------CAATGTTGGGT-A----TGCCCATGTGACACTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302041:1208450-1208598 + TCCTCACGCAGCGTTTCAGCGTTGGCAGCAGC---------------G---------------GTCTGCCCCGGGATGAGGTGAGTGCGGAC--CACGGAGTCCGGTGGCTAG-----------------------------T---------------------------------------------------------------------------------------------------GTGCAGTAGATTTGTGCTTTTCAATGTTTTGGTTGT--G-T-TGT-------GGC----T---GTA-G----TGCTCGTGTGACACTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415169:738965-739089 - TCCTCACCCAGCGCTTCAGCGTTGGCAGCAGC---------------A---------------CGCTGCCCCGGGACGAGGTGAGTACTTGG------A---TCG----------------------------------------------------------------------------------------------------------------------GAGGAAT-----CCCAA--GTAGAGTAGATTTGTGCTTTTCAATGTTTTGCTTGT--T-T-TGT----------------GGATT-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409008:561294-561700 + TCTTGACGCAACGTTTTAGCGTTGGCAGTAGT---------------G---------------GCCTGCCCCGGGACGAGGTAAGTCCGGAT------TAG---------------------------------------TCT---------------------------------------------------------------------------------------------------GTCGTGTAGATTTGTGCTTTTCAATGTTTTGTTT-------------------------------------------ATGTAAAAGTGAACTTTCGAGAAAGA-----------------------------------AT------TC-TCGGTACTGGTCGTAGTGGTCATTGTCATCCAATTTTGATTTAATAGATAGTGCTAG---GAACTGCAACTTATGTGCTTC-----------------------ATATTAGCATAGTGTCATAGGTCTTT-----------------------------------------------GTGTGTCGTAGTTACTTGCCTTCGGGCTTTGTCCATGTCTTGTCT-----------------------------------TT------------GTCCTC------------GTGG-TGTCC-----------TCGTTTG-------------TGGCTCACC---ATTAGCCCGGCAACTGATCGAATATGTCTGA---C-------TTATCCAACAGCTGCCGC---GAAGTACGCGGCCGAATCTTATTACTGGTA---TGCAGCGCCGTAG---
dm3 chrX:14150741-14151071 + TCCTGACGCAGCGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAGGTAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--T-A-TGT----------------TTGAT-G----TGC-----------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------------GCCATAGTTCAGTGTCATTGGTCAATAGAGTAGTCAAAAGCTGTAG----------TTTATTGGGAACGTCAAATGTGCCATAGTTGCTTGCTTTCGTGCTTCGTCCATGTT----------------------------------TGTGTCTTC------------GTCCTC------------GTGG-TGTTCTCGTGTTGTCTTCGCTTG-------------TGGCTCGAG---TGC-AGCCGGCAACTGACCAAATACGCCTAG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGGCGTAG---
droSim2 x:13360607-13360933 + dsi_21741 TCCTGACGCAGCGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAGGTAAGTACTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCA--T---CT------------------------TTTAAATTG----CC-TCGATGATGTTCAT---------------------------------------------------------------------------------------------------CAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTTTATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGTT----------------------------------------TGTGTCTTC------------GTCCTC------------GTGT-TGTTCCCATGTTGTCATCGTTTG-------------TGGCTCCAG---TGC-AGCCGGCAACTGATCAAATACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGGCGTAG---
droSec2 scaffold_20:753637-754009 + dse_1049 TCCTGACTCAACGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAGGTAAGTACTGTG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--T-A-TGT----------------TGGAT-GTGCGTGCCCATGTGACACTGAACTTTCGGAGCA--T---CT------------------------TTTAAATTG----CC-TCGATGATGTTCAT---------------------------------------------------------------------------------------------------CAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTTTATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGTT----------------------------------------TGTGTCTTC------------GTCCTC------------GTGC-TGTTCCCATGTTGTCATCGTTTG-------------TGGCTCCAG---TGC-AGCTGGCAACTGATCAAATACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGGCGTAG---
droYak3 X:8403497-8403895 + dya_146 TCCTGACGCAGCGTTTCAGCGTTGGCAGCAGC---------------G---------------GTTTGCCCCGGGACGAGGTACGTACTCCG------GAGTT-G--G--------------------------------------------------------------------------------------------------------------------------------TC-----AAGAGTAGATTTGTGCTTTTCAATGTTTTGGTTGT--C-A-TGT----------------TGTAT-G----TGCCCATGTGACACTGAACTTTCGAGGCA--TTGTTT------------------------TTTATAT------CC-TCGATAACGT------------------------------------------------------------------------------------------------------TCAGTGTCATTGGT------------------------------------------GAACGTTAAATGTGCCTTAGTTGCTTGCTTCCGTACTTCGTCCATGTTCCGTCTTCGTCCATGTTCCGTACTTCGTCCATGTTGCGTCGTC------------GTCCTT------------GTGC-TGTCC-----------TCGTGTG-------------TGGCTCGAG---TGC-AGCCGGCAACTGACCAATTACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGCCGTAA---
droEre2 scaffold_4690:12780611-12780984 - TCCTGACGCAGCGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTGCCCCGGGACGAGGTAAGTGCTGCG------GAGAGT--------------------------------------------------------------------------------------------------------------------------------GTG-TC-----TAGAGTAGATTTGTGCTTTTCAATGTTTTGGTTGT--T-A-TGT----------------TGGAT-G----TGTCCAAGGGACACTGAACCTGCGGCGCA--T---AT------------------------TTTATGTGC----CCGCCGGTAAGGT------------------------------------------------------------------------------------------------------TCAGTGTCCTTGGTCAATAGACTTGTCAAATGCTGTAGA----------------------------------CAGTTGCTTGCTTCCGTGCTTCGTCCATTTGTCGTCT-----------------------------------TC------------GTCCTC------------ATGT-TGTCC-----------TCATGTG-------------TGGCTCGAG---TGC-ACTCGGCAACTGACCAAAAACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCTCAAGCGGCCGAATCTTTTGACCGGAA---TACACCGCCGTAA---
dp5 XL_group1e:5114025-5114312 - dps_2693 TGTTCACCTCGCGCTTTAGCATCGGCAGCACCACCAGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTA------GAG-------ATGAGTGTTTAGTTATTGTTTC-----------------------------------------------------TTGTTGTATGTGTATGT----------------------------------------------------------------------CTC------------------------TGGCTTGTGCCTC----T-------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGTC--------------------------------------------------------------------------------------------TG--TTTT------------------------------GTG-----------------------------------CTCGTC---GTCGTCGTCCCT------------GGGTCTATTG-----------TTTCGTG-------------TGGCTACAG---T----CCCTGCTATTGAATGCCTACTG---AACTT-------CTGATCCACAGCGGCCGCTACGTCGGGAGCGGCCGAATCTATTGACCGGAA---TGCAGCGCCGCAG---
droPer2 scaffold_21:21055-21353 - dpe_1142 TGTTCACCTCGCGCTTCAGCATCGGCAGCACCACCAGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTA------GAG-------ATGAGTGTTTGGTTATTGTTTC-----------TT-------------GT-TGTATGTGT-------------------------T-----------------------------GTATGT------------------------------------GTCGTCTC------------------------TGGCTTGTGTATC----T-------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGTC--------------------------------------------------------------------------------------------TG--TTTT------------------------------GTG-----------------------------------CTCGTCTTCGTCGTCGTCCCT------------GGGTCTATTG-----------TTTCGTG-------------TGGCTACAG---T----CCCTGCTATTGAATGCCTACTG---AACTT-------CTGATCCACAGCGGCCGCTACGTCGGGAGCGGCCGAATCTATTGACCGGCA---TGCAGCGCCGCAG---
droWil2 scf2_1100000004515:4493242-4493311 + TTTTCTCATCACGTTTCAGTCTCGGCAGCAGCAGTAGCAATAGCAGCG---------------CCCTGCCACGGGATGAGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:995974-996275 - dvi_12740 TCTTTGCATCACGTTTTAGCATTGGTTCCAGTGGTATCGGTGGCGG---------GGTACATTGTCTGCCAAGCGTCGAGGTAAAATACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------CGAATCATATTTGTGTTCTT--GCCGTCTCTTTTTTTT-T-----------------------------------------------------------------------------------------------------TGTT-------------------------------------------------------------------------------------------TAGCTTGTAGAGT-----------------------------------------------------------------------ATTCCCTGTG--TTTACTG-----------------------------------------------------------------CCTGCCGTCA---TGCCTTTTAGCTCCGTCCTCGTTA-TGT----------------TGTG-------------TACTCG---TACCGC-AATGACCCATTAAACAAATAATTACTC---C-------TTTTACAGCAACGGCGTCGACGTCAACATAAAAAAAATTTGTTTACAGGTA---TGCACCGCCGCATTCC
droMoj3 scaffold_6473:3137812-3138105 + TCTTCGCATCTCGCTTCAGCATTGGCAACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGACAATGTCTGCCACGGGACGAGGTAAGAAAAGCA------A-----------------------------------------------------------------------------------------------------------------------------------------------GCAAAGAGCATCTGTGTGTTTCTGTCGTCTCCTCTTGTG-TT-TT-------AGC----CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG--TTTACTG-----------------------------------------------------------------CCTGTTGTCG---TGCCCCCTATAAACGTCCTCGTGC-TT----------------TTGTG-------------TGGTTGA--TGCCGC-CACGGCCCATTAAAAGAATAA---TAT---G-------CTCCTTCACAGAGGCGGC---GTCACCGTAAAGAGAGCCTGTTAAAGGGCATTATGCATCGCCGTCA---
droGri2 scaffold_15203:11978518-11978844 + TCTTTGCGTCACGGTTCAGCATGGGCAGCAGCGGCGCCACTGGTGGTGG------TGGACAATGCCTGCCACGCGACGAGGTAAGTAGTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGTATTTTTGATGTTCTGTGC--TGGTGCGT--GGT-TG----------CGATTTGTGTT-T----TGTTAGTTTGT-----------------------------------------------------------TGGA-------------------------------------------------------------------------------------------AAACATATATA-------------------------------------GGT---------------------------------ACAAACTGTG--TTAACTG-----------------------------------------------------------------CCAGTCATCGTTGTCGTCCGT-----CGTCCTTGTGA-TTG---------------TTTTG-------------TAGCTAG--TACTAC-AACGGGTCATTTAC-AAAAACGCTG-T---G-------CTCCTTCACAGCAGCGGCACTCTCATCGTAAAAAAAAAGTGTTGCCGCTAA---ATCAACGCCGCAATCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCCTATCCTCGCGCTTCAGCGTGGGCAGCAGC---------------G---------------GCCTGCCACGGGACGAGGTAAGGATCCCA------G-----------------------------------------CTTGTGGAGTAGATTT--GAATTTGTGTT-TTTGGCTTTTTGGTTGTAGAATGCTTGTGTCCATGTCCATGTGGCACTGGAA-GAAGGTATTGTT-------------------------------------------------------------------------------------------------------------------CCGAATTAGAAAGGGTCAG----------------------------------------------------------------------------------CTA----TACCTATG----CC--------------------AGTGCCATCGTCCAGTGTCTTAGGTGAG---------------------------------------------------------------------CTGTGTTTCGTCCATGTCCGTTCT-----------CCGTCCTCC-----------------------------GTCCCA------------GTCG-TGT------------------------------------CT-----------AACAAGTCATTACTGAGACAG---CAT---C-------CCATCCAACAGCTGCCGC---GTCGCAAGCGGCCGAATCTGCTGACCGGAA---TGCAGCGCCGTCG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............TCAGCGTGGGCAGCAGC---------------G---------------GCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---GTCGCAAGCGGCCGAATCTGCTGAC........................2711.001100000
droBip1
TCCTGTCCTCGCGTTTCAGCGTCGGCAGCAGC---------------G---------------GCCTGCCACGGGACGAGGTAAGTCCAGGGTCCT-----TCCG--G--G--G----------------GCTGCTCTGGTTTGTGTAGTAGACTTGTGAGTATGTGTTTTTTGGCTATTTGGTTGTAGAATGCTTATGT------CCAACTGGCACTGGACGGAAGGTATAGTC-------------------------------------------------------------------------------------------------------------------ACGAATTAGAGCAGGACAGATATATACAATGGTC----TCGC---TCTAATTC--------------------------------------------GGTACTA----TACCAATG----A-------------------------------TACAGTGCCATTGTCGCTTAGTG------------------------------------ATGTCCAATGTT---------TCCAT-----------GTCCATGTGTCGTCC-----------------------------ATG--TCC------------GTCCTT------------GTCA-TGT-------------------CTAGCACGACTG---------AG---ATC-AGTCAGTAACGAGTCCA-GCCTCCTGG---CAACCTGTTTATCCAACAGCTGCCGC---GTCGCAAGCGGTCGAATCTGCTGACTGGAA---TGCAGCGCCGTCG---SizeHit CountTotal NormTotal
No Reads
droKik1
TCCTCACAACACGGTTCAGCGTCGGCAGCAGC---------------G---------------GCCTGCCCCGGGACGAGGTAAGTTTCCG----------TCTG--G-----------------------------------------------------------------------------------------------------------------------------------A--AACAAGTAGAATTGTGAGATTCAATGTTTTGGTTGT--TGTTGGTAGATTGTGTA----T----GT-A----TGCCCATGTGCC------CACTCGAACACGA--------------------------------------------------TA-----------------------------------------------------------------------------------------------------------TAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCTTACGCAGCGTTTTAGCGTTGGCAGCAGC---------------G---------------GTTTGCCACGGGACGAGGTAAGTAAAAAG------AAA--------T-------------------------------------------------------------------------------------------------------------------------------CAA--TGTTGGTAGATATGTCATTTTCCATGTTTTGGTTGT-------GT----------------TCAAT-G----TGCTTTTGTTACAAAGAAATG------------------------------------------------------------------------------------------------------------------------------------------TAAGC-TAGTTAGTGGGCTATTGCTTTCGTTCAGT-------------------------------------------------------GTAAAGTGTGCCTCAGCTG------------------CCACGTCTCGTCC-----------------------------------TT------------GTCCAC------------TTCA-TGTTC-----------T-TTGTG-----TGGCTGTGTAGCTC------TGT-AGCCGGCAATTGAC---------TTGG---CA------ATCTCCCACAGCTGCCGC---GTCGTCAGCGGCCGAATCTTCTGACCGGCG---TGCACCGCCG------SizeHit CountTotal NormTotal
No Reads
droEle1
TTCTCACCCAGCGTTTCAGCGTTGGCAGCAGC---------------A---------------CTCTGCCCCGGGACGAGGTAAGTCACAGAGCCACAGAGTTC--------------------------------------------------------------------------------------------------------------------------------GTGTCCAAGTGTTGAGTAGATTTGTGCCTTTCAATGTTTTGGTATTG-G-TT-TT-------GGC----TTGAGTT-G----TGCCCACATGACACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCCTGACGCAGCGTTTCAGCGTTGGCAGCAGC---------------G---------------GTCTGCCCCGAGACGAGGTAAGTACGAAC--G--------------------------------------------------------------------------------------------------------------------------------GAAGGTTTCGTGCTCAA--GTTGAGTAGATTTGTGATTTTCAATGTTTTGGTTTTG--GTT-TT----------CAATGTTGGGT-A----TGCCCATGTGACACTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCCTCACGCAGCGTTTCAGCGTTGGCAGCAGC---------------G---------------GTCTGCCCCGGGATGAGGTGAGTGCGGAC--CACGGAGTCCGGTGGCTAG-----------------------------T---------------------------------------------------------------------------------------------------GTGCAGTAGATTTGTGCTTTTCAATGTTTTGGTTGT--G-T-TGT-------GGC----T---GTA-G----TGCTCGTGTGACACTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCCTCACCCAGCGCTTCAGCGTTGGCAGCAGC---------------A---------------CGCTGCCCCGGGACGAGGTGAGTACTTGG------A---TCG----------------------------------------------------------------------------------------------------------------------GAGGAAT-----CCCAA--GTAGAGTAGATTTGTGCTTTTCAATGTTTTGCTTGT--T-T-TGT----------------GGATT-G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCTTGACGCAACGTTTTAGCGTTGGCAGTAGT---------------G---------------GCCTGCCCCGGGACGAGGTAAGTCCGGAT------TAG---------------------------------------TCT---------------------------------------------------------------------------------------------------GTCGTGTAGATTTGTGCTTTTCAATGTTTTGTTT-------------------------------------------ATGTAAAAGTGAACTTTCGAGAAAGA-----------------------------------AT------TC-TCGGTACTGGTCGTAGTGGTCATTGTCATCCAATTTTGATTTAATAGATAGTGCTAG---GAACTGCAACTTATGTGCTTC-----------------------ATATTAGCATAGTGTCATAGGTCTTT-----------------------------------------------GTGTGTCGTAGTTACTTGCCTTCGGGCTTTGTCCATGTCTTGTCT-----------------------------------TT------------GTCCTC------------GTGG-TGTCC-----------TCGTTTG-------------TGGCTCACC---ATTAGCCCGGCAACTGATCGAATATGTCTGA---C-------TTATCCAACAGCTGCCGC---GAAGTACGCGGCCGAATCTTATTACTGGTA---TGCAGCGCCGTAG---SizeHit CountTotal NormTotal
No Reads
dm3
TCCTGACGCAGCGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAGGTAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--T-A-TGT----------------TTGAT-G----TGC-----------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------------GCCATAGTTCAGTGTCATTGGTCAATAGAGTAGTCAAAAGCTGTAG----------TTTATTGGGAACGTCAAATGTGCCATAGTTGCTTGCTTTCGTGCTTCGTCCATGTT----------------------------------TGTGTCTTC------------GTCCTC------------GTGG-TGTTCTCGTGTTGTCTTCGCTTG-------------TGGCTCGAG---TGC-AGCCGGCAACTGACCAAATACGCCTAG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGGCGTAG---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................G---------------GTTTACCCCGGGACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
TCCTGACGCAGCGATTCAGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000
...............TCAGCGTTGGCAGCAGC---------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGCAGCAGC---------------G---------------GTTTACCCCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................C---------------G---------------GTTTACCCCGGGACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000002000000000000000
................CAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCTGTAG----------TTTATTGGGAA...........................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCCATGTT----------------------------------TGTGTCTTC------------.......................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--T-A-TGT----------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATCTTCTGACCGGA....................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCGAATCTTCTGACCGGAA---................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........GCGATTCAGCGTTGGCAGCAGC---------------G---------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................TAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................GTAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTGACCAAATACGCCT...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCGTTGGCAGCAGC---------------G---------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATCTTCTGACCGGAA---TACACC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCAGC---------------G---------------GG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGCGTTGGCAGCAGC---------------G---------------GTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GTTTACCCCGGGACGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCGAATCTTCTGACCGGAA---................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGACGCAGCGATTCAGCGTTGGCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT----------------------------------TGTGTCTTC------------GTCCTC------------GTGG-TGT.............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG-TGTTCTCGTGTTGTC.................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................GCAGC---------------G---------------GTTTACCCCGGGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GACGCAGCGATTCAGCGTTGGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGTCATTGGTCAATAGAGTAG.............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCAGC---------------G---------------GTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCGC---GGCGCAAGCGGCCGA..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCAGCGTTGGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAACTGACCAAATACGGA....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................GTAAGTATTGGG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--T-A-TGT----------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTGCTTCGTCCATGTT----------------------------------TGTGTC......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............TTCAGCGTTGGCAGCAGC---------------G---------------GTTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................T--T-A-TGT----------------TTGAT-G----TGC-----------------------------------------------------------------------GT---------------------------------------------------------------------------------------------------------GCCAT.........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCGTTGGCAGCAGC---------------C---------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TTACCCCGGGACGAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGCGTTGGCAGCAGC---------------T---------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCTGACGCAGCGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAGGTAAGTACTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCA--T---CT------------------------TTTAAATTG----CC-TCGATGATGTTCAT---------------------------------------------------------------------------------------------------CAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTTTATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGTT----------------------------------------TGTGTCTTC------------GTCCTC------------GTGT-TGTTCCCATGTTGTCATCGTTTG-------------TGGCTCCAG---TGC-AGCCGGCAACTGATCAAATACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGGCGTAG---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTTCTGACCGG.....................1512.00200000000020000000
..........GCGATTCAGCGTTGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
......................TGGCAGCAGC---------------G---------------GTTTACCCCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
...............TCAGCGTTGGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
............GATTCAGCGTTGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...............TCAGCGTTGGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
...............TCAGCGTTGGCAGCAGC---------------C---------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCGTGCTTTGA.....................................................................................................................................................................................................................................................1550.20100000000010000000
droSec2
TCCTGACTCAACGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTACCCCGGGACGAGGTAAGTACTGTG------AAG-------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT--T-A-TGT----------------TGGAT-GTGCGTGCCCATGTGACACTGAACTTTCGGAGCA--T---CT------------------------TTTAAATTG----CC-TCGATGATGTTCAT---------------------------------------------------------------------------------------------------CAGTGTCATTGGTCAATAGAGTAGTCTAAAGCTGTAGTCAAAGGTGGTTTATTGGGAACGTAAAATGTG---------CTTGCTTCCGTGCTTTGTT----------------------------------------TGTGTCTTC------------GTCCTC------------GTGC-TGTTCCCATGTTGTCATCGTTTG-------------TGGCTCCAG---TGC-AGCTGGCAACTGATCAAATACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGGCGTAG---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................TTGGCAGCAGC---------------G---------------GTTTACCCCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
droYak3
TCCTGACGCAGCGTTTCAGCGTTGGCAGCAGC---------------G---------------GTTTGCCCCGGGACGAGGTACGTACTCCG------GAGTT-G--G--------------------------------------------------------------------------------------------------------------------------------TC-----AAGAGTAGATTTGTGCTTTTCAATGTTTTGGTTGT--C-A-TGT----------------TGTAT-G----TGCCCATGTGACACTGAACTTTCGAGGCA--TTGTTT------------------------TTTATAT------CC-TCGATAACGT------------------------------------------------------------------------------------------------------TCAGTGTCATTGGT------------------------------------------GAACGTTAAATGTGCCTTAGTTGCTTGCTTCCGTACTTCGTCCATGTTCCGTCTTCGTCCATGTTCCGTACTTCGTCCATGTTGCGTCGTC------------GTCCTT------------GTGC-TGTCC-----------TCGTGTG-------------TGGCTCGAG---TGC-AGCCGGCAACTGACCAATTACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCGCAAGCGGCCGAATCTTCTGACCGGAA---TACACCGCCGTAA---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................ATGTGACACTGAACTTTCGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22113.0013001300000000
....................GTTGGCAGCAGC---------------G---------------GTTTGCCCCGGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2719.00900000000009
...............................................................................................................................................................................................................................................................................................................................ATGTGACACTGAACTTTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300210000000
...............................................................................................................................................................................................................................................................................................................................ATGTGACACTGAACTTTCGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000
.....................TTGGCAGCAGC---------------G---------------GTTTGCCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEre2
TCCTGACGCAGCGATTCAGCGTTGGCAGCAGC---------------G---------------GTTTGCCCCGGGACGAGGTAAGTGCTGCG------GAGAGT--------------------------------------------------------------------------------------------------------------------------------GTG-TC-----TAGAGTAGATTTGTGCTTTTCAATGTTTTGGTTGT--T-A-TGT----------------TGGAT-G----TGTCCAAGGGACACTGAACCTGCGGCGCA--T---AT------------------------TTTATGTGC----CCGCCGGTAAGGT------------------------------------------------------------------------------------------------------TCAGTGTCCTTGGTCAATAGACTTGTCAAATGCTGTAGA----------------------------------CAGTTGCTTGCTTCCGTGCTTCGTCCATTTGTCGTCT-----------------------------------TC------------GTCCTC------------ATGT-TGTCC-----------TCATGTG-------------TGGCTCGAG---TGC-ACTCGGCAACTGACCAAAAACGCCTGG---C-------CTATCCCACAGCTGCCGC---GGCTCAAGCGGCCGAATCTTTTGACCGGAA---TACACCGCCGTAA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TGTTCACCTCGCGCTTTAGCATCGGCAGCACCACCAGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTA------GAG-------ATGAGTGTTTAGTTATTGTTTC-----------------------------------------------------TTGTTGTATGTGTATGT----------------------------------------------------------------------CTC------------------------TGGCTTGTGCCTC----T-------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGTC--------------------------------------------------------------------------------------------TG--TTTT------------------------------GTG-----------------------------------CTCGTC---GTCGTCGTCCCT------------GGGTCTATTG-----------TTTCGTG-------------TGGCTACAG---T----CCCTGCTATTGAATGCCTACTG---AACTT-------CTGATCCACAGCGGCCGCTACGTCGGGAGCGGCCGAATCTATTGACCGGAA---TGCAGCGCCGCAG---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................CGGCAGCAGTG---------------GCCTGCCCCGTGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
TGTTCACCTCGCGCTTCAGCATCGGCAGCACCACCAGCGGCAGCAGTG---------------GCCTGCCCCGTGATGAGGTAAGACTGGTA------GAG-------ATGAGTGTTTGGTTATTGTTTC-----------TT-------------GT-TGTATGTGT-------------------------T-----------------------------GTATGT------------------------------------GTCGTCTC------------------------TGGCTTGTGTATC----T-------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGTC--------------------------------------------------------------------------------------------TG--TTTT------------------------------GTG-----------------------------------CTCGTCTTCGTCGTCGTCCCT------------GGGTCTATTG-----------TTTCGTG-------------TGGCTACAG---T----CCCTGCTATTGAATGCCTACTG---AACTT-------CTGATCCACAGCGGCCGCTACGTCGGGAGCGGCCGAATCTATTGACCGGCA---TGCAGCGCCGCAG---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCT------------GGGTCTATTG-----------TTTCGTG-------------TGG.........................................................................................................................2411.001010000
...............................................G---------------GCCTGCCCCGTGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
droWil2
TTTTCTCATCACGTTTCAGTCTCGGCAGCAGCAGTAGCAATAGCAGCG---------------CCCTGCCACGGGATGAGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................AATAGCAGCG---------------CCCTGCCACGGGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
droVir3
TCTTTGCATCACGTTTTAGCATTGGTTCCAGTGGTATCGGTGGCGG---------GGTACATTGTCTGCCAAGCGTCGAGGTAAAATACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------CGAATCATATTTGTGTTCTT--GCCGTCTCTTTTTTTT-T-----------------------------------------------------------------------------------------------------TGTT-------------------------------------------------------------------------------------------TAGCTTGTAGAGT-----------------------------------------------------------------------ATTCCCTGTG--TTTACTG-----------------------------------------------------------------CCTGCCGTCA---TGCCTTTTAGCTCCGTCCTCGTTA-TGT----------------TGTG-------------TACTCG---TACCGC-AATGACCCATTAAACAAATAATTACTC---C-------TTTTACAGCAACGGCGTCGACGTCAACATAAAAAAAATTTGTTTACAGGTA---TGCACCGCCGCATTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGGTA---TGCACCGCCGC.....2011.001000000000000000000000000000000000000100000000000000000000000000
...................................ATCGGTGGCGG---------GGTACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
................................GGTATCGGTGGCGG---------GGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................GTACATTGTCTGCCAAGCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
.....GCATCACGTTTTAGCATTGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................TTGGTTCCAGTGGTATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
.......................................................GGTACATTGTCTGCCAAGCGTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCG---TACCGC-AATGACCCA...................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.........................................................TACATTGTCTGCCAAGCGTCGAGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..TTTGCATCACGTTTTAGCATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGAGT-----------------------------------------------------------------------ATTCCCTGTG--TT............................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.....GCATCACGTTTTAGCATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTC---C-------TTTTACAGCAACGGC.......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTTCGCATCTCGCTTCAGCATTGGCAACGGCGGCGGCGGCGGCGGCGGAGGAGGAGGACAATGTCTGCCACGGGACGAGGTAAGAAAAGCA------A-----------------------------------------------------------------------------------------------------------------------------------------------GCAAAGAGCATCTGTGTGTTTCTGTCGTCTCCTCTTGTG-TT-TT-------AGC----CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG--TTTACTG-----------------------------------------------------------------CCTGTTGTCG---TGCCCCCTATAAACGTCCTCGTGC-TT----------------TTGTG-------------TGGTTGA--TGCCGC-CACGGCCCATTAAAAGAATAA---TAT---G-------CTCCTTCACAGAGGCGGC---GTCACCGTAAAGAGAGCCTGTTAAAGGGCATTATGCATCGCCGTCA---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCTTTGCGTCACGGTTCAGCATGGGCAGCAGCGGCGCCACTGGTGGTGG------TGGACAATGCCTGCCACGCGACGAGGTAAGTAGTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGTATTTTTGATGTTCTGTGC--TGGTGCGT--GGT-TG----------CGATTTGTGTT-T----TGTTAGTTTGT-----------------------------------------------------------TGGA-------------------------------------------------------------------------------------------AAACATATATA-------------------------------------GGT---------------------------------ACAAACTGTG--TTAACTG-----------------------------------------------------------------CCAGTCATCGTTGTCGTCCGT-----CGTCCTTGTGA-TTG---------------TTTTG-------------TAGCTAG--TACTAC-AACGGGTCATTTAC-AAAAACGCTG-T---G-------CTCCTTCACAGCAGCGGCACTCTCATCGTAAAAAAAAAGTGTTGCCGCTAA---ATCAACGCCGCAATCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:13 AM