dan_1526

CDS [Dana\GF22554-cds]; exon [dana_GLEANR_6514:3]; exon [dana_GLEANR_6514:4]; CDS [Dana\GF22554-cds]; intron [Dana\GF22554-in]

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAACGTTGCTTGTGTGATACGAACGACACAGAATTCCTCGGAAGTGCCAGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCAGTGGAGGGAATCCGGGCAGTACGCCACGGGCACGACCACGTCGCTCCACACCAAACTCGCTGAGTCCCGACAGCGATGGCAGCGACAACGGTAGCAGTCTGGGTGATGACATACACGCCGATGACCCACACACAGAAGCGGCAGTGGGTCAAATATTATCGGGTTCGTCCACGGTGGAGTCGCCA **************************************************************..((.(((...((.((.((...((....))..)).)).))........)))..))*********************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	V055 head	M044 female body	V105 male body	M058 embryo	V039 embryo
...............................................................................................GTTGCAGTGGAGGGAATCCGGGCA.......................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................TGATGACAGACACGCCGA................................................................	18	1	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................TTATCGGGTCCGTCAACGGTG.........	21	2	1	1.00	1	0	1	0	0	0	0
...............................................................................................GTGGCAGTGGAGGGAATCCGGGCA.......................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0
..............................................CCAGGCGGTGGCGGTGGCGGT...........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................CATAGAAGCGGTAGTGGGTTA..................................	21	3	2	0.50	1	0	0	0	0	0	1
..........................................................................GCGGTGGCGGTGGCGGTGGCGGTGGCA.........................................................................................................................................................................................	27	0	2	0.50	1	1	0	0	0	0	0
..........................................................................GCGGTGGCGGTGGCGGCGGCGGTGGCA.........................................................................................................................................................................................	27	1	3	0.33	1	1	0	0	0	0	0
................................................................GGTGGCGGTGGCGGTGGCGGTGGC......................................................................................................................................................................................................	24	0	14	0.29	4	2	0	0	2	0	0
......................................................................GGTGGCGGTGGCGGTGGCGGTGGC................................................................................................................................................................................................	24	0	14	0.29	4	2	0	0	2	0	0
....................................................GGTGGCGGTGGCGGTGGCGGTGGC..................................................................................................................................................................................................................	24	0	14	0.29	4	2	0	0	2	0	0
............................................................................GGTGGCGGTGGCGGTGGCGGTGGC..........................................................................................................................................................................................	24	0	14	0.29	4	2	0	0	2	0	0
..........................................................GGTGGCGGTGGCGGTGGCGGTGGC............................................................................................................................................................................................................	24	0	14	0.29	4	2	0	0	2	0	0
............................................................................................................................................................................................................................................................................TCCCCAGTGGAGTCGCCA	18	2	4	0.25	1	0	0	1	0	0	0
............................................................................GGTGGCGGTGGCGGTGGC................................................................................................................................................................................................	18	0	20	0.20	4	3	0	1	0	0	0
..............................................................................................................................................................................................AGTAGCAGTCTGGGTGCT..............................................................................	18	2	5	0.20	1	0	1	0	0	0	0
................................................................GGTGGCGGTGGCGGTGGC............................................................................................................................................................................................................	18	0	20	0.20	4	3	0	1	0	0	0
......................................................................GGTGGCGGTGGCGGTGGC......................................................................................................................................................................................................	18	0	20	0.20	4	3	0	1	0	0	0
................................................AGGCGGTGGCGGTGGCGGTG..........................................................................................................................................................................................................................	20	0	5	0.20	1	0	0	1	0	0	0
..................................................................................GGTGGCGGTGGCGGTGGC..........................................................................................................................................................................................	18	0	20	0.20	4	3	0	1	0	0	0
....................................................................................................................................ACGACCACCGCGCACCACACC.....................................................................................................................................	21	3	6	0.17	1	0	0	0	0	1	0
....................................................................................TGGCGGTGGCGGTGGCGGTGGAGGG.................................................................................................................................................................................	25	1	6	0.17	1	1	0	0	0	0	0
........................................................GCGGTGGCGGTGGCGGTGGCGGTGG.............................................................................................................................................................................................................	25	0	13	0.15	2	1	0	1	0	0	0
..................................................GCGGTGGCGGTGGCGGTGGCGGTGG...................................................................................................................................................................................................................	25	0	13	0.15	2	1	0	1	0	0	0
..........................................................................GCGGTGGCGGTGGCGGTGGCGGTGG...........................................................................................................................................................................................	25	0	13	0.15	2	1	0	1	0	0	0
....................................................................GCGGTGGCGGTGGCGGTGGCGGTGG.................................................................................................................................................................................................	25	0	13	0.15	2	1	0	1	0	0	0
..............................................................GCGGTGGCGGTGGCGGTGGCGGTGG.......................................................................................................................................................................................................	25	0	13	0.15	2	1	0	1	0	0	0
..........................................................GGTGGCGGTGGCGGTGGC..................................................................................................................................................................................................................	18	0	20	0.15	3	3	0	0	0	0	0
.................................................................GTGGCGGTGGCGGTGGCGGTGGCG.....................................................................................................................................................................................................	24	0	14	0.14	2	2	0	0	0	0	0
.....................................................GTGGCGGTGGCGGTGGCGGTGGCG.................................................................................................................................................................................................................	24	0	14	0.14	2	2	0	0	0	0	0
.......................................................................GTGGCGGTGGCGGTGGCGGTGGCG...............................................................................................................................................................................................	24	0	14	0.14	2	2	0	0	0	0	0
...........................................................GTGGCGGTGGCGGTGGCGGTGGCG...........................................................................................................................................................................................................	24	0	14	0.14	2	2	0	0	0	0	0
...............................AATTCCTCTGAAGTGTCA.............................................................................................................................................................................................................................................	18	2	7	0.14	1	0	1	0	0	0	0
.........................................................................................................................................CCCGTCGCTCCACACCAC...................................................................................................................................	18	2	8	0.13	1	0	0	0	0	1	0
.............................................................GGCGGTGGCGGTGGCGGTGGC............................................................................................................................................................................................................	21	0	20	0.10	2	1	0	1	0	0	0
...................................................................GGCGGTGGCGGTGGCGGTGGC......................................................................................................................................................................................................	21	0	20	0.10	2	1	0	1	0	0	0
..............................................................GCGGTGGCGGTGGCGGTGGCGGTGGC......................................................................................................................................................................................................	26	0	12	0.08	1	1	0	0	0	0	0
....................................................................GCGGTGGCGGTGGCGGTGGCGGTGGC................................................................................................................................................................................................	26	0	12	0.08	1	1	0	0	0	0	0
..................................................GCGGTGGCGGTGGCGGTGGCGGTGGC..................................................................................................................................................................................................................	26	0	12	0.08	1	1	0	0	0	0	0
..........................................................................GCGGTGGCGGTGGCGGTGGCGGTGGC..........................................................................................................................................................................................	26	0	12	0.08	1	1	0	0	0	0	0
........................................................GCGGTGGCGGTGGCGGTGGCGGTGGC............................................................................................................................................................................................................	26	0	12	0.08	1	1	0	0	0	0	0
..................................................GCGGTGTCGGTGGCGGTGGCGGTGGC..................................................................................................................................................................................................................	26	1	13	0.08	1	1	0	0	0	0	0
....................................................................GCGGTGTCGGTGGCGGTGGCGGTGGC................................................................................................................................................................................................	26	1	13	0.08	1	1	0	0	0	0	0
........................................................GCGGTGTCGGTGGCGGTGGCGGTGGC............................................................................................................................................................................................................	26	1	13	0.08	1	1	0	0	0	0	0
..........................................................................GCGGTGTCGGTGGCGGTGGCGGTGGC..........................................................................................................................................................................................	26	1	13	0.08	1	1	0	0	0	0	0
..............................................................GCGGTGTCGGTGGCGGTGGCGGTGGC......................................................................................................................................................................................................	26	1	13	0.08	1	1	0	0	0	0	0
.................................................GGCGGTGGCGGTGGCGGTGGCGGT.....................................................................................................................................................................................................................	24	0	16	0.06	1	0	0	1	0	0	0
...................................................................GGCGGTGGCGGTGGCGGTGGCGGT...................................................................................................................................................................................................	24	0	16	0.06	1	0	0	1	0	0	0
.............................................................................................................................CTCGGGCACGACCAGGT................................................................................................................................................	17	2	16	0.06	1	0	1	0	0	0	0
.............................................................GGCGGTGGCGGTGGCGGTGGCGGT.........................................................................................................................................................................................................	24	0	16	0.06	1	0	0	1	0	0	0
.......................................................GGCGGTGGCGGTGGCGGTGGCGGT...............................................................................................................................................................................................................	24	0	16	0.06	1	0	0	1	0	0	0
.........................................................................GGCGGTGGCGGTGGCGGTGGCGGT.............................................................................................................................................................................................	24	0	16	0.06	1	0	0	1	0	0	0
............................CTGAATTCCTAGTAAGTGC...............................................................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	1	0
...................................................................................GTGGCGGTGGCGGTGGCA.........................................................................................................................................................................................	18	0	17	0.06	1	0	0	1	0	0	0
.......................................................................................................................................CGCTCGTCGCTCCACACCAA...................................................................................................................................	20	3	18	0.06	1	0	0	0	0	1	0
....................................................................GCGGTGGTGGTGGCGGTGGCGGTGG.................................................................................................................................................................................................	25	1	18	0.06	1	1	0	0	0	0	0
..........................................................................GCGGTGGTGGTGGCGGTGGCGGTGG...........................................................................................................................................................................................	25	1	18	0.06	1	1	0	0	0	0	0
........................................................GCGGTGGTGGTGGCGGTGGCGGTGG.............................................................................................................................................................................................................	25	1	18	0.06	1	1	0	0	0	0	0
..................................................GCGGTGGTGGTGGCGGTGGCGGTGG...................................................................................................................................................................................................................	25	1	18	0.06	1	1	0	0	0	0	0
..............................................................GCGGTGGTGGTGGCGGTGGCGGTGG.......................................................................................................................................................................................................	25	1	18	0.06	1	1	0	0	0	0	0
..................................................GCGGTGGCGGTGGCGGTCG.........................................................................................................................................................................................................................	19	1	20	0.05	1	1	0	0	0	0	0
........................................................GCGGTGGCGGTGGTGGTGGC..................................................................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0
..........................................................................GCGGTGGCGGTGGTGGTGGC................................................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0
............................................................TGGCGGTGGCGGTGGCGGTGGCG...........................................................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
....................................................................GCGGTGGCGGTGGCGGTCG.......................................................................................................................................................................................................	19	1	20	0.05	1	1	0	0	0	0	0
.................................................GGCGGTGGCGGTGGCGGTGGC........................................................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0	0
...........................................................GTGGCGGTGGCGGTGGCG.................................................................................................................................................................................................................	18	0	20	0.05	1	1	0	0	0	0	0
....................................................................GCGGTGGCGGTGGCGGTGG.......................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
.................................................GGCGGTGGCGGTGGCGGTGGCG.......................................................................................................................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0
.....................................................GTGGCGGTGGCGGTGGCG.......................................................................................................................................................................................................................	18	0	20	0.05	1	0	0	1	0	0	0
................................................................................GCGGTGGCGGTGGCGGTGG...........................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
.......................................................................GTGGCGGTGGCGGTGGCG.....................................................................................................................................................................................................	18	0	20	0.05	1	1	0	0	0	0	0
............................................................................GATGGCGGTGGCGGTGGCGGTGGC..........................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	1	0
......................................................................GATGGCGGTGGCGGTGGCGGTGGC................................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	1	0
.......................................................GGCGGTGGCGGTGGCGGTGGC..................................................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
..........................................................................GCGGTGGCGGTGGCGGTCG.................................................................................................................................................................................................	19	1	20	0.05	1	1	0	0	0	0	0
......................................................TGGCGGTGGCGGTGGCGGTGG...................................................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
..........................................................GATGGCGGTGGCGGTGGCGGTGGC............................................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	1	0
............................................................TGGCGGTGGCGGTGGCGGTGG.............................................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................................TGAGACACACGCCCATGAC............................................................	19	3	20	0.05	1	0	0	1	0	0	0
....................................................GATGGCGGTGGCGGTGGCGGTGGC..................................................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	1	0
..............................................................GCGGTGGCGGTGGCGGTCG.............................................................................................................................................................................................................	19	1	20	0.05	1	1	0	0	0	0	0
.........................................................................GGCGGTGGCGGTGGCGGTGGC................................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0	0
..............................................................GCGGTGGCGGTGGTGGTGGC............................................................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0
......................................................TGGCGGTGGCGGTGGCGGTGGCG.................................................................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
....................................................................GCGGTGGCGGTGGTGGTGGC......................................................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0
........................................................................TGGCGGTGGCGGTGGCGGTGGCG...............................................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
...................................................................GGCGGTGGCGGTGGCGGTGGCG.....................................................................................................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0
..........................................................................GCGGTGGCGGTGGCGGTGG.................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
..............................................................................TGGCGGTGGCGGTGGCGGTGG...........................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
................................................................GATGGCGGTGGCGGTGGCGGTGGC......................................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	1	0
..................................................................TGGCGGTGGCGGTGGCGGTGG.......................................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
...............................................................................GGCGGTGGCGGTGGCGGTGGC..........................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0	0
.............................................................................GTGGCGGTGGCGGTGGCG...............................................................................................................................................................................................	18	0	20	0.05	1	1	0	0	0	0	0
.........................................................................GGCGGTGGCGGTGGCGGTGGCG...............................................................................................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0
..................................................................TGGCGGTGGCGGTGGCGGTGGCG.....................................................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
........................................................GCGGTGGCGGTGGCGGTGG...................................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
..............................................................GCGGTGGCGGTGGCGGTGG.............................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
.......................................................GGCGGTGGCGGTGGCGGTGGCG.................................................................................................................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0
.................................................................GTGGCGGTGGCGGTGGCG...........................................................................................................................................................................................................	18	0	20	0.05	1	1	0	0	0	0	0
................................................................................GCGGTGGCGGTGGTGGTGGC..........................................................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0	0
.............................................................GGCGGTGGCGGTGGCGGTGGCG...........................................................................................................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0
................................................................................GCGGTGGCGGTGGCGGTCG...........................................................................................................................................................................................	19	1	20	0.05	1	1	0	0	0	0	0

GTTGCAACGAACACACTATGCTTGCTGTGTCTTAAGGAGCCTTCACGGTCCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGTCACCTCCCTTAGGCCCGTCATGCGGTGCCCGTGCTGGTGCAGCGAGGTGTGGTTTGAGCGACTCAGGGCTGTCGCTACCGTCGCTGTTGCCATCGTCAGACCCACTACTGTATGTGCGGCTACTGGGTGTGTGTCTTCGCCGTCACCCAGTTTATAATAGCCCAAGCAGGTGCCACCTCAGCGGT *********************************************************************************************************************************************************************..((.(((...((.((.((...((....))..)).)).))........)))..))**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V055 head	M044 female body	V105 male body	V106 head
......................................................................................................................................CTGGTGCAGCGAGGTGTGGTT...................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.........................................TTCATGGTCTGCCACGGCCAC................................................................................................................................................................................................................................	21	3	5	0.20	1	0	1	0	0	0
........................................................................................................................................................................................................................TCGGCGACTGGGTGCGTGTCT.................................................	21	3	6	0.17	1	0	1	0	0	0
.........................................................................................................................................................................................................................CGGCTACTGGGTGCGTGTTC.................................................	20	3	6	0.17	1	0	1	0	0	0
....................................................................................................................................TGCTGGTGCAGCAAGGGGTA......................................................................................................................................	20	3	10	0.10	1	0	0	1	0	0
.........................................................................................................................................GTAGAGCGGGGTGTGGTTTG.................................................................................................................................	20	3	11	0.09	1	0	0	0	1	0
....................................................................................................................................................................................GTCGCTGTTGCCGAAGTCAG......................................................................................	20	3	14	0.07	1	0	0	1	0	0
.....................................................................................................................................................................................TCGCTGTTGCCGAAGTCAG......................................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13248:1847842-1848127 +	dan_1526	CAACGTTGCTTGTGTGATACGAACGACACAGAATTCCTCGGA-----------------AGTGCCA------G---------GCGGTGGCGGTGGCGGTGG-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GCAGT---GGAGGGAATCCGGGCAGT-------ACGCCACG------------------GGCACGACCACGTCGCTCCACACCAAACTCGCTGAGTCCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG-------CGATGGCAGC---GACAACGGTA------------------------------------------------------------GCAGTCTGGGTGATGACAT-----------------------------------------------------ACACGCCGATGACCCACACACAGAAGCGGCAGTGGGTCAAATATTATCGGGTTCGTCCACGGTGGAGTCGCCA
droBip1	scf7180000395544:13313-13514 -		GAACATGGCATGTGTGGTGCGTACGCCGACGATGTCCTCGGA-----------------AGTAGCG------A---------G------------------------------------------------------------------------------------CGGAGGCGGT------AATCCG---------------------------------------------GACAGT-------------------ACACCGCG------------------TGCGCGACCGCGTCGTTCCACATCAAACTCGATGAGTCCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG-------CAATGGCAGC---G---------------------------------------------------------------ATGA------------------GGA-----------------------------------------------------GCACTCAGATGATCCGCACACTGATGCGGTCGAGATT---------------CAGTCCACAGCAGACTCGCCA
droKik1	scf7180000302495:188927-189030 -		GGCGGC-----------------------------------------------------GGTG-------GCG---------GCGGCGGTGGTGG-------------T------GGT------------------GCT------GGCGGTGGCG----GCGGCGGA-------GGT------GGTGGTTCCAGCTCACGC--------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------GACGCAGTGCCGCGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------AGGTCGCGCATCAC
droFic1	scf7180000454177:16273-16510 +		CCTGGT-----------------------------------------------------GGCG-------GCG---------GCGGTGGTGACGGCGG----------C------GGCCCTAGCGGCAGT------------------------GGCGG--------CGGCAGCGGC------GGTCCT------------------TGCGGCAG---TGGCGGCGGCAGCGACGGCGT----------------------------------GTTCTTTGCCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---GCGGCGGCGGCGACGGTGGCGGCCCTCGCGGCAGCG---------G-----------------CGGCAT-CGACGA---------------TGGCAGC------------GGTCCTTCCGGCCGTGGAGGCCACACCCACGCCGGCGGAG-------------------------GAGGCGGCGACA---------------TCTTCGGCGGCGGCGGTGACA
droEle1	scf7180000491006:1430187-1430391 -		GGCAGT-----------------------------------------------------GCGG-------GCA---------GCGGTGGCAGTGG-------------C------GGC------------------GGC------GGCGGTGGCG----GCGGAGGA-------AGT------GGCCCGGCCAGCGCCGGCGGACCAAATA-------------------------------------------------------------------------------------GTGGTGGCGGACCAGCGCTGCTCAATGCCGGCAGCAATAGCAAC-------------------------------------------------------AGCGGTGTTG----------------------------------------------------------------------------------------------------GC-------------------------------------------------------AGCGGCG---------G-----------------CGC----CGCCAGCAGCAACAGCAACA---GCAGCGTCGGTGGCA----------------------------------------------------------------------------------------------TCGTTGGCAGCGGCGGACCCG
droRho1	scf7180000771836:2326-2479 -		GCGGCG------------------------GCGA------------------------CGGCG-------GTG---------GCGGTGGCGGTGG-------CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GCGGT---GGCGGTGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------------GGC--------------------------------------------------GGT-GGCGGTGGCGGTGGCGG-------TG---GCGGTGGCGGTGGCGGTG------------------------------------------------------------GCGGT----------GCGGTGGCGGTGGCATCG------------------------------------ACG-------------------------GT---------------------------------GGTGGC-------
droBia1	scf7180000297330:1110-1235 -		GGCAGT-----------------------------------------------------GGCA-------GTG---------GCAGTGGCAGTGGCAGTG-G------CAGTGGC------------AGT------GGC------AGT------G----GCA-------------GT------G---------------------------------------------------GCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTGGCA------GT----------------------------------GGC--------------------------------------------------AGT-GGCAGTGGCAGTGGC----------AGTGGCAGTGGCAGTGGCAGTG------------------------------------------------------------GCAGT-------------------------------------------------------------------------------------------------------------------------CTGGG------T-------
droTak1	scf7180000412391:467-671 +		GGCGGT-----------------------------------------------------GGTG-------GTG---------GTGGCGGCGTCGCCGGTG-G------TGGTGGC------------GGT------GGC------GTT------G---G--------CAGCGGTGGT------GGTGTC---------------------GCCGGTGGTGGTGGCGGTGGC---GGCGG----------------------------------T----------------------GTT------------------------------------------------------------GTTGGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCGTCGCCGGTGGTGGTG---------G-----------------CGG----TGGCGGCGGTGTTGTTGGCGGTGGCGTCGCCGGTGGTGGTG------------------------------------GCG-------------------------GTGGCGGCGGTG---------------TTGTTGGCGGTGGCGTCGCCG
droEug1	scf7180000409554:4218218-4218392 +		CCATG----------------------------------------GA------------GGTG-------CAG---------GCGGATATGGAGGCGGCGG-------CGGAGGT---------------------GGA------TTT------G----GA-------------------------------------------------GGCGG---TGGCGGCGGTGGCTACGGAGGTAAACCTG----------------------------------GCGGTAG----------------------------------------------------TGGTGGCTACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGGTCCAGGCGGCGGCG---------G-----------------TGG----CTACGGAGGCAGTGGTGGCGGTGGCTACGGAGGCAGTGGTG------------------------------------GC-------------------------------------------------------------GGTGGC-------
dm3	chr3R:8126826-8127022 +		GGCGGG-----------------------------------------------------GGCA-------GTG---------GCAGTGGCGGTGGCGGTA-G------TGGAGGC------------GGT------------------------G----GCG-------------GAG---------------------------------TCGT---TGGATGTGGCAGCCACAACGT----------------------------------TGTCGCTGCCAGTCA----------------------------------------------------TGACCAGCTCGCCAATGTTGCTGTCATGCAGCAAACATACGGCAG---CGGCGGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGCGGTTGCCACAACGGTAACAACG------------------------------------GCA-------------------------GC---------------------------------GGCGGCA-----G
droSim2	x:9599869-9600021 -		AGGCG-----------------------------------------------------------------------------GTGGTGGCAACGG---AGG-CGGCGGT------GGT------------------GGC------AAC------G----GAG-------------GCGGCGGTG------------------------------------------GTGGT---GGTGGCGGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCTACGGC-------------------------GGCCATGGACCAAGTGGCCCAGTCCAGGTGGTCAAGGTGATCCACCAGCAGGG---CG-------------------------GCGGCGGC---G------------------------------------------------------------------------------------------------------------------------------------------GTG-------------------------GC---------------------------------GGCGTTG-----G
droSec2	scaffold_8:2305657-2305776 +		GTGG-A-----------------------------------------------------AGTA-------------------GTAGTGGTGGTGG-------------T------GGT---------GGTGGT---GGTGGTGGCAGT------G----GCA-------------GTGGCGGGG------------------------------------------GCGGT---AGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCGCCCA---TTG-GCATCACTCTGCCGCAGC------------------------------------------------------CG-------------------------ACGGCGTC---G------------------------------------------------------------------------------------------------------------------------------------------TCG-------------------------AC---------------------------------GGCGACG------
droYak3	3R:12444372-12444572 +		AGGCA----------------------------------------GT------------GGCA-------ATA---------TCAGTGGCGGTGG-------------T------GGA------------------GGC------GGT------G----GCG-------------GAGTCGGT---------------------------GTCGG---TGGATGTGGCAGCCACAACGT----------------------------------TGTCGCTGCCAGTCA----------------------------------------------------TGACCAGCTCACCAATGTTGCTGTCATGCAGCCAACATACGGCAGTGGCAGCGGCTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGCGGCTGCCACAACGGTAACAACG------------------------------------GCA-------------------------GC---------------------------------GGCGGCG-----G
droEre2	scaffold_4770:13488792-13489003 -		GGCAGT-----------------------------------------------------GGCA-------GTG---------GCAGTAGCGGTGG-------------TGGAGGC------------GGTGGCGGTGGC------GGT------G----GCG-------------GT------GGCGTT---------------------GTCGG---TGGATGTGGCAGCCACAACGT----------------------------------TGTCGCTGCCAGTCA----------------------------------------------------TGACCAGCTCACCAATGTTGCTGTCATGCAGCCAACATACGGCAGCGGCAGCGGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGCGGTTGCCACAACGGTAACAACG------------------------------------GCA-------------------------GC---------------------------------GGCGGCA-----G
dp5	XR_group8:3320799-3320960 -		CTCGGA-----------------------------------------------------CGTGGTC------C---------GCACTGGTGGGGGAGGGGC-CGGTGCC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGAG------------------------------------------GTAAG---GGCAAGGCTC----------------------GCAAGGAG----------------------ATT----------------GTCCAAAGCAAGCACCATCCGAATC-------------------------------------------------------AGACCC----------------------A---GCC---------------------------------------------------------------------------GCAGCAGCCGCAGCAG-------CCGCAGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AC---------------------------------AGCAGCA------
droPer2	scaffold_4:5910918-5911136 -	dpe_1623	AGCGAC------------------------ACGAAAGCCGATGGAATGACTCGAGGCGCGGTG-------GCG---------GTGGAGGCGGCGG----------CGGT------GGC---------GGT---------------GGC------G----GTG-------------GCGGC------------------------------------------------------GGAGGTTACTCCA-----GCAACAG---------------------------------------------------------------------------------TGGCGGT------------------------------------------------GGCGGCGGGGGCAGCCGTGGCTATGACAATCGCCGGGACCAGCTATGGAGGTGG------------------------------------------------------CG-------------------------GCGGAGGC---GGGGGCGGTG------------------------------------------------------------GT---------GGCCAACAGAAC------------------------------TGGATGCAGAACAATCGCA-------------------------GG---------------------------------AGCGGC-------
droWil2	scf2_1100000004768:1760080-1760255 +		GGCGGA-----------------------------------------------------GGAG-------GAG---------GAGGAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGCGGCG------------------------------------------GAGGT---GGAGGCTATCACA-----GCAACAG---------------------------------------------------------------------------------TTCCAC-----TCCGCATTACTATCAT--AGTCAAA---------------------------------------------------A------TAGCAATGAAGGCGGC--------------------------------------------------GGC-G----------------------------GA------GGCGGCGGTG------------------------------------------------------------GCTATACG------CCCTATGAGAAGCGCAACA------------------------------------ATG-------------------------GT---------------------------------GGCGGTG-----G
droVir3	scaffold_12970:10166912-10167038 -		CTCACA-----------------------------------------------------AATG-------CCA---------GCAGTGGCGGCGGCGGCGG-CGGCGGT------GGC------------------GGT------GGC------G----GCG-------------GTGGCGGTG------------------------------------------GCAGT---GTTGG-------------------------------------CGCTGCCAGCCC---------------------------------------------------------------------------------------------------------------------------------------C---TCAGG---------------------------------------------------------------------------AGCAACTGCAACAG-------CAGCGGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AT---------------------------------GGCAGCA-----G
droMoj3	scaffold_6680:20358891-20359092 -		GGCACA------------------------GCAGAACTCGAC-----------------ACTGCCCCATTCTGGTGGAGGCGGCAGCGGTACTGG-------------A------GCT---------GGTGGCGGTGGT------GGC------G----GCG-------------GTGGCGGTG------------------------------------------GTGGT---GGTA----------------------CGCCCAG------------------CTCTCCGCTCAGCAGCTCACCGTCCA-------------------------------------------GCGTTTCA-----------------------------------------------------------------G------TCGCCCC---------------------------------------------------------------GAC------AGCAGCAGCCGCGCTCAACGGCAAC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------ACAGTAATAGCA---------------TCTCGAACGATGGC-------
droGri2	scaffold_15245:7384109-7384312 -		GGCGGT-----------------------------------------------------GGTG-------GTG---------GTGGTGGCGCAGC-------------T------GGT------------------GGC------GGTGCAGGTG----GCG-------------GTGGTGGTG------------------------------------------GCAGC---AGCAGC------------------------------------------AAATCG----------------------------------------------------CGACGGGATCGC----------GATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGCACAGCTGCCAAGCGCAGAGGCAACGATAAGCATCAACTGATGATGGCCACAGCTAGTGGCAGTCTCG------------AACA-----------------ATTGTGCCCCATCGATCCACACCAACAGCA-------------------------GC---------------------------------AGCAGCA-----G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CAACGTTGCTTGTGTGATACGAACGACACAGAATTCCTCGGA-----------------AGTGCCA------G---------GCGGTGGCGGTGGCGGTGG-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GCAGT---GGAGGGAATCCGGGCAGT-------ACGCCACG------------------GGCACGACCACGTCGCTCCACACCAAACTCGCTGAGTCCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG-------CGATGGCAGC---GACAACGGTA------------------------------------------------------------GCAGTCTGGGTGATGACAT-----------------------------------------------------ACACGCCGATGACCCACACACAGAAGCGGCAGTGGGTCAAATATTATCGGGTTCGTCCACGGTGGAGTCGCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................GTG------------------------------------------GCAGT---GGAGGGAATCCGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............................................................CCA------G---------GCGGTGGCGGTGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................GC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	1
................................................................................................GGTGG-CGGTGGC------GGT------------------GGC------GGT------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	2	2
.......................................................................................................GGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	2	2
....................................................................................GGTGGCGGTGGCGGTGG-CGGTGGC------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	2	2
...................................................................................................................GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	2	2
..........................................................................................GGTGGCGGTGG-CGGTGGC------GGT------------------GGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.29	4	0	0	0	0	2	2
...................................................................................................................GGT------------------GGC------GGT------G----GCG-------------GTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	1	0	0	0	0	3
................................................................................................GGTGG-CGGTGGC------GGT------------------GGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	1	0	0	0	0	3
.......................................................................................................GGTGGC------GGT------------------GGC------GGT------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	1	0	0	0	0	3
.................................................................A------G---------GCGGTGGCGGTGGCGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	1	0	0	0	0	0
.................................................................................................................................................GGT------G----GCG-------------GTGGCGGTG------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	1	0	0	0	0	3
........................................................................................GCGGTGGCGGTGG-CGGTGGC------GGT------------------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	1	0	0	0	0	1
..................................................................................GCGGTGGCGGTGGCGGTGG-CGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	1	0	0	0	0	1
...........................................................................................................GC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	1	0	0	0	0	1
....................................................................................................G-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	1	0	0	0	0	1
..............................................................................................GCGGTGG-CGGTGGC------GGT------------------GGC------GGT------G----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	1	0	0	0	0	1
..........................................................................................GGTGGCGGTGG-CGGTGGC------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	3
.................................................................................................GTGG-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	0	0	0	0	2
.....................................................................................GTGGCGGTGGCGGTGG-CGGTGGC------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	0	0	0	0	2
........................................................................................................GTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	0	0	0	0	2
...........................................................................................GTGGCGGTGG-CGGTGGC------GGT------------------GGC------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	0	0	0	0	2
.............................................................................................GGCGGTGG-CGGTGGC------GGT------------------GGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	1	0	0	0	0	1
...................................................................................................GG-CGGTGGC------GGT------------------GGC------GGT------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	1	0	0	0	0	1
..............................................................................................GCGGTGG-CGGTGGC------GGT------------------GGC------GGT------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	1
....................................................................................................G-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	1
..................................................................................GCGGTGGCGGTGGCGGTGG-CGGTGGC------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	1
...........................................................................................................GC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	1
........................................................................................GCGGTGGCGGTGG-CGGTGGC------GGT------------------GGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	1
........................................................................G---------GCGGTGGCGGTGGCGGTGG-CGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
...................................................................................................GG-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
.............................................................................................GGCGGTGG-CGGTGGC------GGT------------------GGC------GGT------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
.......................................................................................GGCGGTGGCGGTGG-CGGTGGC------GGT------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
..........................................................................................................GGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
..................................................................................................................................................GT------G----GCG-------------GTGGCGGTG------------------------------------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	1	0	0	0	0	0
............................................................................................TGGCGGTGG-CGGTGGC------GGT------------------GGC------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................G---------GCGGTGGCGGTGGCGGTGG-C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...........................................................................................GTGGCGGTGG-CGGTGGC------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
....................................................................................................G-CGGTGGC------GGT------------------GGC------GGT------G----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................G---------GCGGTGGCGGTGGCGGTGG-CG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....................................................................................GTGGCGGTGGCGGTGG-CG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................GC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................................................GTGGC------GGT------------------GGC------GGT------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
.......................................................................................GGCGGTGGCGGTGG-CGGTGGC------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................TGGCGGTGGCGGTGG-CGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
............................................................................................TGGCGGTGG-CGGTGGC------GGT------------------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................GGC------GGT------------------GGC------GGT------G----GCG-------------GTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
......................................................................................TGGCGGTGGCGGTGG-CGGTGGC------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.........................................................................................................TGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
...................................................................................................GG-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...........................................................................................................GC------GGT------------------GGC------GGT------G----GCG-------------GTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................T------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................................TGG-CGGTGGC------GGT------------------GGC------GGT------G----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
....................................................................................................................GT------------------GGC------GGT------G----GCG-------------GTGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
..........................................................................................................GGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..................................................................................................TGG-CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................................GCGGTGGCGGTGG-CGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
..............................................................................................GCGGTGG-CGGTGGC------GGT------------------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.......................................................................................GGCGGTGGCGGTGG-CGGTGGC------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.................................................................................................GTGG-CGGTGGC------GGT------------------GGC------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
.............................................................................................GGCGGTGG-CGGTGGC------GGT------------------GGC------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droBip1

GAACATGGCATGTGTGGTGCGTACGCCGACGATGTCCTCGGA-----------------AGTAGCG------A---------G------------------------------------------------------------------------------------CGGAGGCGGT------AATCCG---------------------------------------------GACAGT-------------------ACACCGCG------------------TGCGCGACCGCGTCGTTCCACATCAAACTCGATGAGTCCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG-------CAATGGCAGC---G---------------------------------------------------------------ATGA------------------GGA-----------------------------------------------------GCACTCAGATGATCCGCACACTGATGCGGTCGAGATT---------------CAGTCCACAGCAGACTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCGGC-----------------------------------------------------GGTG-------GCG---------GCGGCGGTGGTGG-------------T------GGT------------------GCT------GGCGGTGGCG----GCGGCGGA-------GGT------GGTGGTTCCAGCTCACGC--------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------GACGCAGTGCCGCGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------AGGTCGCGCATCAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCTGGT-----------------------------------------------------GGCG-------GCG---------GCGGTGGTGACGGCGG----------C------GGCCCTAGCGGCAGT------------------------GGCGG--------CGGCAGCGGC------GGTCCT------------------TGCGGCAG---TGGCGGCGGCAGCGACGGCGT----------------------------------GTTCTTTGCCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---GCGGCGGCGGCGACGGTGGCGGCCCTCGCGGCAGCG---------G-----------------CGGCAT-CGACGA---------------TGGCAGC------------GGTCCTTCCGGCCGTGGAGGCCACACCCACGCCGGCGGAG-------------------------GAGGCGGCGACA---------------TCTTCGGCGGCGGCGGTGACA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCAGT-----------------------------------------------------GCGG-------GCA---------GCGGTGGCAGTGG-------------C------GGC------------------GGC------GGCGGTGGCG----GCGGAGGA-------AGT------GGCCCGGCCAGCGCCGGCGGACCAAATA-------------------------------------------------------------------------------------GTGGTGGCGGACCAGCGCTGCTCAATGCCGGCAGCAATAGCAAC-------------------------------------------------------AGCGGTGTTG----------------------------------------------------------------------------------------------------GC-------------------------------------------------------AGCGGCG---------G-----------------CGC----CGCCAGCAGCAACAGCAACA---GCAGCGTCGGTGGCA----------------------------------------------------------------------------------------------TCGTTGGCAGCGGCGGACCCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCGGCG------------------------GCGA------------------------CGGCG-------GTG---------GCGGTGGCGGTGG-------CGGTGGC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGTG------------------------------------------GCGGT---GGCGGTGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------------GGC--------------------------------------------------GGT-GGCGGTGGCGGTGGCGG-------TG---GCGGTGGCGGTGGCGGTG------------------------------------------------------------GCGGT----------GCGGTGGCGGTGGCATCG------------------------------------ACG-------------------------GT---------------------------------GGTGGC-------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCAGT-----------------------------------------------------GGCA-------GTG---------GCAGTGGCAGTGGCAGTG-G------CAGTGGC------------AGT------GGC------AGT------G----GCA-------------GT------G---------------------------------------------------GCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTGGCA------GT----------------------------------GGC--------------------------------------------------AGT-GGCAGTGGCAGTGGC----------AGTGGCAGTGGCAGTGGCAGTG------------------------------------------------------------GCAGT-------------------------------------------------------------------------------------------------------------------------CTGGG------T-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCGGT-----------------------------------------------------GGTG-------GTG---------GTGGCGGCGTCGCCGGTG-G------TGGTGGC------------GGT------GGC------GTT------G---G--------CAGCGGTGGT------GGTGTC---------------------GCCGGTGGTGGTGGCGGTGGC---GGCGG----------------------------------T----------------------GTT------------------------------------------------------------GTTGGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCGTCGCCGGTGGTGGTG---------G-----------------CGG----TGGCGGCGGTGTTGTTGGCGGTGGCGTCGCCGGTGGTGGTG------------------------------------GCG-------------------------GTGGCGGCGGTG---------------TTGTTGGCGGTGGCGTCGCCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCATG----------------------------------------GA------------GGTG-------CAG---------GCGGATATGGAGGCGGCGG-------CGGAGGT---------------------GGA------TTT------G----GA-------------------------------------------------GGCGG---TGGCGGCGGTGGCTACGGAGGTAAACCTG----------------------------------GCGGTAG----------------------------------------------------TGGTGGCTACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGGTCCAGGCGGCGGCG---------G-----------------TGG----CTACGGAGGCAGTGGTGGCGGTGGCTACGGAGGCAGTGGTG------------------------------------GC-------------------------------------------------------------GGTGGC-------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGCGGG-----------------------------------------------------GGCA-------GTG---------GCAGTGGCGGTGGCGGTA-G------TGGAGGC------------GGT------------------------G----GCG-------------GAG---------------------------------TCGT---TGGATGTGGCAGCCACAACGT----------------------------------TGTCGCTGCCAGTCA----------------------------------------------------TGACCAGCTCGCCAATGTTGCTGTCATGCAGCAAACATACGGCAG---CGGCGGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGCGGTTGCCACAACGGTAACAACG------------------------------------GCA-------------------------GC---------------------------------GGCGGCA-----G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................ACGGCAG---CGGCGGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.....................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGTCA----------------------------------------------------TGACCAGCTCGCCA..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGCCACAACGT----------------------------------TGTCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TACGGCAG---CGGCGGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGTA-G------TGGAGGC------------GGT------------------------G----GCG-------------GG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGCCACAACGT----------------------------------TGTCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCAGCCACAACGT----------------------------------TGTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGC......................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAG.......................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAG.......................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGC......................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................G---CGGCGGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCA..............................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGGCG-----------------------------------------------------------------------------GTGGTGGCAACGG---AGG-CGGCGGT------GGT------------------GGC------AAC------G----GAG-------------GCGGCGGTG------------------------------------------GTGGT---GGTGGCGGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCTACGGC-------------------------GGCCATGGACCAAGTGGCCCAGTCCAGGTGGTCAAGGTGATCCACCAGCAGGG---CG-------------------------GCGGCGGC---G------------------------------------------------------------------------------------------------------------------------------------------GTG-------------------------GC---------------------------------GGCGTTG-----G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................AG-------------GCGGCGGTG------------------------------------------GTGGT---GGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GGTG------------------------------------------GTGGT---GGTGGCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTGG-A-----------------------------------------------------AGTA-------------------GTAGTGGTGGTGG-------------T------GGT---------GGTGGT---GGTGGTGGCAGT------G----GCA-------------GTGGCGGGG------------------------------------------GCGGT---AGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCGCCCA---TTG-GCATCACTCTGCCGCAGC------------------------------------------------------CG-------------------------ACGGCGTC---G------------------------------------------------------------------------------------------------------------------------------------------TCG-------------------------AC---------------------------------GGCGACG------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................GGTGG-------------T------GGT---------GGTGGT---GGTGGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	2
.....................................................................................GTGGTGGTGG-------------T------GGT---------GGTGGT---GGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.65	13	0	2	0	11
........................................................................................GTGGTGG-------------T------GGT---------GGTGGT---GGTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.65	13	0	2	0	11
......................................................................................TGGTGGTGG-------------T------GGT---------GGTGGT---GGTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.37	7	1	2	0	4
......................................................................................TGGTGGTGG-------------T------GGT---------GGTGGT---GGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	1	0	0	5
.......................................................................................GGTGGTGG-------------T------GGT---------GGTGGT---GGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	5
.............................................................................................GG-------------T------GGT---------GGTGGT---GGTGGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1
.....................................................................................GTGGTGGTGG-------------T------GGT---------GGTGGT---GGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	17	0.12	2	0	2	0	0
.....................................................................................GTGGTGGTGG-------------T------GGT---------GGTGGT---GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2
........................................................................................GTGGTGG-------------T------GGT---------GGTGGT---GGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2
.......................................................................................GGTGGTGG-------------T------GGT---------GGTGGT---GGTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0
......................................................................................TGGTGGTGG-------------T------GGT---------GGTGGT---GGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0
.......................................................................................GGTGGTGG-------------T------GGT---------GGTGGT---GGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1
.......................................................................................GGTGGTGG-------------T------GGT---------GGTGGT---GGTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1
.....................................................................................GTGGTGGTGG-------------T------GGT---------GGTGGT---GGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0
........................................................................................GTGGTGG-------------T------GGT---------GGTGGT---GGTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0
.........................................................................................TGGTGG-------------T------GGT---------GGTGGT---GGTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0
..........................................................................................GGTGG-------------T------GGT---------GGTGGT---GGTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0
.......................................................................................GGTGGTGG-------------T------GGT---------GGTGGT---GGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0
........................................................................................GTGGTGG-------------T------GGT---------GGTGGT---GGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0

droYak3

AGGCA----------------------------------------GT------------GGCA-------ATA---------TCAGTGGCGGTGG-------------T------GGA------------------GGC------GGT------G----GCG-------------GAGTCGGT---------------------------GTCGG---TGGATGTGGCAGCCACAACGT----------------------------------TGTCGCTGCCAGTCA----------------------------------------------------TGACCAGCTCACCAATGTTGCTGTCATGCAGCCAACATACGGCAGTGGCAGCGGCTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGCGGCTGCCACAACGGTAACAACG------------------------------------GCA-------------------------GC---------------------------------GGCGGCG-----G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................TCATGCAGCCAACATACGGCAGT..................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................GTGGCGGTGG-------------T------GGA------------------GGC------GGT------G----GCG-------------GAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................GTGGCGGTGG-------------T------GGA------------------GGC------GGT------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................G-------------T------GGA------------------GGC------GGT------G----GCG-------------GAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGC......................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGC......................................................................................................................................	20	20	0.10	2	0	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGG......................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGCAGT-----------------------------------------------------GGCA-------GTG---------GCAGTAGCGGTGG-------------TGGAGGC------------GGTGGCGGTGGC------GGT------G----GCG-------------GT------GGCGTT---------------------GTCGG---TGGATGTGGCAGCCACAACGT----------------------------------TGTCGCTGCCAGTCA----------------------------------------------------TGACCAGCTCACCAATGTTGCTGTCATGCAGCCAACATACGGCAGCGGCAGCGGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCAGCGGTTGCCACAACGGTAACAACG------------------------------------GCA-------------------------GC---------------------------------GGCGGCA-----G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................ACGT----------------------------------TGTCGCTGCCAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................GTAGCGGTGG-------------TGGAGGC------------GGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................GGCGGTGGC------GGT------G----GCG-------------GT------GGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0

dp5

CTCGGA-----------------------------------------------------CGTGGTC------C---------GCACTGGTGGGGGAGGGGC-CGGTGCC------GGT------------------GGC------GGT------G----GCG-------------GTGGCGGAG------------------------------------------GTAAG---GGCAAGGCTC----------------------GCAAGGAG----------------------ATT----------------GTCCAAAGCAAGCACCATCCGAATC-------------------------------------------------------AGACCC----------------------A---GCC---------------------------------------------------------------------------GCAGCAGCCGCAGCAG-------CCGCAGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AC---------------------------------AGCAGCA------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................GAGGGGC-CGGTGCC------GGT------------------GGC------GGT------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................GGTGCC------GGT------------------GGC------GGT------G----GCG-------------GTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....A-----------------------------------------------------CGTGGTC------C---------GCACTGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGGAG------------------------------------------GTAAG---GGCAAGGCTC----------------------GTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCCGCAGCAG-------CCGCA...............................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AC---------------------------------AGCAG........	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCGAC------------------------ACGAAAGCCGATGGAATGACTCGAGGCGCGGTG-------GCG---------GTGGAGGCGGCGG----------CGGT------GGC---------GGT---------------GGC------G----GTG-------------GCGGC------------------------------------------------------GGAGGTTACTCCA-----GCAACAG---------------------------------------------------------------------------------TGGCGGT------------------------------------------------GGCGGCGGGGGCAGCCGTGGCTATGACAATCGCCGGGACCAGCTATGGAGGTGG------------------------------------------------------CG-------------------------GCGGAGGC---GGGGGCGGTG------------------------------------------------------------GT---------GGCCAACAGAAC------------------------------TGGATGCAGAACAATCGCA-------------------------GG---------------------------------AGCGGC-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC------------------------------TGGATGCAGAACAATCGC..........................................................................	22	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GT------------------------------------------------GGCGGCGGGGGCAGCCGTGG.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAAC------------------------------TGGATGCAGAACAATC............................................................................	24	1	1.00	1	1	0	0	0	0	0
...GAC------------------------ACGAAAGCCGATGGAATGACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................GAGGCGCGGTG-------GCG---------GTGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................C---------GGT---------------GGC------G----GTG-------------GCGGC------------------------------------------------------GGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
..........................................................................................GGCGG----------CGGT------GGC---------GGT---------------GGC------G----GTG-------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................GGT---------------GGC------G----GTG-------------GCGGC------------------------------------------------------GGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	0	1

droWil2

GGCGGA-----------------------------------------------------GGAG-------GAG---------GAGGAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGCGGCG------------------------------------------GAGGT---GGAGGCTATCACA-----GCAACAG---------------------------------------------------------------------------------TTCCAC-----TCCGCATTACTATCAT--AGTCAAA---------------------------------------------------A------TAGCAATGAAGGCGGC--------------------------------------------------GGC-G----------------------------GA------GGCGGCGGTG------------------------------------------------------------GCTATACG------CCCTATGAGAAGCGCAACA------------------------------------ATG-------------------------GT---------------------------------GGCGGTG-----G	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................GAGGAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGGC--------------------------------------------------GGC-G----------------------------GA------GGCGGCGGTG------------------------------------------------------------G................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................AGGAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGGC--------------------------------------------------GGC-G----------------------------GA------GGCGGCGGTG------------------------------------------------------------GCT..............................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGCGCAACA------------------------------------ATG-------------------------GT---------------------------------GGCGGT.......	26	1	1.00	1	0	0	1	0	0
.....................................................................................GAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1
.....................................................................................GAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	1
.....................................................................................GAGGTGGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	1
............................................................GAG-------GAG---------GAGGAGGTGGTGG-------------T------GGT------------------GGT------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0
............................................................GAG-------GAG---------GAGGAGGTGGTGG-------------T------GGT------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.50	2	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------------------------------------------------GGC-G----------------------------GA------GGCGGCGGTG------------------------------------------------------------GC...............................................................................................................................................	20	5	0.40	2	0	1	1	0	0
...........................................................................................GTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	11	0.36	4	0	0	0	0	4
....GA-----------------------------------------------------GGAG-------GAG---------GAGGAGGTGGTGG-------------T------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0
......................................................................GAG---------GAGGAGGTGGTGG-------------T------GGT------------------GGT------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0
.............................................................................................GG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.21	4	0	4	0	0	0
............................................................................................TGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.20	2	0	2	0	0	0
..............................................................................................G-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGCGGCG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
......................................................................................AGGTGGTGG-------------T------GGT------------------GGT------GGC------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0
..........................................................................................GGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	1
...........................................................................................GTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	2	0	0	1
.............................................................................................GG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0
.........................................................................................TGGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0
...........................................................................................GTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0
............................................................................................TGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.12	2	0	2	0	0	0
...........................................................................................GTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0
............................................................................................TGG-------------T------GGT------------------GGT------GGC------G----GCG-------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	1	0	0	1
..............................................................G-------GAG---------GAGGAGGTGGTGG-------------T------GGT------------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0
..............................................................................................G-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0
.............................................................................................GG-------------T------GGT------------------GGT------GGC------G----GCG-------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0
......................................................................GAG---------GAGGAGGTGGTGG-------------T------GGT------------------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0
....................................................................................................................GT------------------GGT------GGC------G----GCG-------------GCGGCGGCG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0
.........................................................................................TGGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	0	0	0	1
...........................................................................................GTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	1	0	0	0
......................................................................GAG---------GAGGAGGTGGTGG-------------T------GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	0	0	1
..............................................................................................G-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0
..............................................................G-------GAG---------GAGGAGGTGGTGG-------------T------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	1	0	0	0
..............................................................................................G-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
GGCGGA-----------------------------------------------------GGAG-------GAG---------GAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0
............................................................................................................T------GGT------------------GGT------GGC------G----GCG-------------GCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
..........................................................................................GGTGG-------------T------GGT------------------GGT------GGC------G----GCG-------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...GGA-----------------------------------------------------GGAG-------GAG---------GAGGAGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
....................................................................................GGAGGTGGTGG-------------T------GGT------------------GGT------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
..........................................................................................................................................T------GGC------G----GCG-------------GCGGCGGCG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
.......................................................................................GGTGGTGG-------------T------GGT------------------GGT------GGC------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
.........................................................................................................................................GT------GGC------G----GCG-------------GCGGCGGCG------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.............................................................................................GG-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..............................................................................................G-------------T------GGT------------------GGT------GGC------G----GCG-------------GCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0

droVir3

CTCACA-----------------------------------------------------AATG-------CCA---------GCAGTGGCGGCGGCGGCGG-CGGCGGT------GGC------------------GGT------GGC------G----GCG-------------GTGGCGGTG------------------------------------------GCAGT---GTTGG-------------------------------------CGCTGCCAGCCC---------------------------------------------------------------------------------------------------------------------------------------C---TCAGG---------------------------------------------------------------------------AGCAACTGCAACAG-------CAGCGGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AT---------------------------------GGCAGCA-----G	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CAGCGGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AT---------------------------------GGC..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AT---------------------------------GGCAG........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCAACAG-------CAGCGGCAGC---.......................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AT---------------------------------GGCAGCA-----.	18	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GC------G----GCG-------------GTGGCGGTG------------------------------------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................GGT------GGC------------------GGT------GGC------G----GCG-------------GTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GGCGGT------GGC------------------GGT------GGC------G----GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG-------CAGCGGCAGC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGGT------GGC------------------GGT------GGC------G----GCG-------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................GCGGCGGCGG-CGGCGGT------GGC------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGCACA------------------------GCAGAACTCGAC-----------------ACTGCCCCATTCTGGTGGAGGCGGCAGCGGTACTGG-------------A------GCT---------GGTGGCGGTGGT------GGC------G----GCG-------------GTGGCGGTG------------------------------------------GTGGT---GGTA----------------------CGCCCAG------------------CTCTCCGCTCAGCAGCTCACCGTCCA-------------------------------------------GCGTTTCA-----------------------------------------------------------------G------TCGCCCC---------------------------------------------------------------GAC------AGCAGCAGCCGCGCTCAACGGCAAC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------ACAGTAATAGCA---------------TCTCGAACGATGGC-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................GGTGGT------GGC------G----GCG-------------GTGGCGGTG------------------------------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCGCGCTCAACGGCAAC---A------------------------------------------------------------------------------------------------------------------------------------------GCA-------------------------AC..............................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................GCGGTGGT------GGC------G----GCG-------------GTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................................TGGT------GGC------G----GCG-------------GTGGCGGTG------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................GGTGGT------GGC------G----GCG-------------GTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.25	2	2	0	0	0	0	0
..................................................................................................................................GGCGGTGGT------GGC------G----GCG-------------GT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.10	1	1	0	0	0	0	0
..........................................................................................................................................................G----GCG-------------GTGGCGGTG------------------------------------------GTGGT---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	1	0	0	0	0	0
.................................................................................................................................................................G-------------GTGGCGGTG------------------------------------------GTGGT---GGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0

droGri2

GGCGGT-----------------------------------------------------GGTG-------GTG---------GTGGTGGCGCAGC-------------T------GGT------------------GGC------GGTGCAGGTG----GCG-------------GTGGTGGTG------------------------------------------GCAGC---AGCAGC------------------------------------------AAATCG----------------------------------------------------CGACGGGATCGC----------GATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGCACAGCTGCCAAGCGCAGAGGCAACGATAAGCATCAACTGATGATGGCCACAGCTAGTGGCAGTCTCG------------AACA-----------------ATTGTGCCCCATCGATCCACACCAACAGCA-------------------------GC---------------------------------AGCAGCA-----G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAGCA-------------------------GC---------------------------------AGCAGCA-----.	21	20	0.05	1	1	0

dan_1526

scaffold_13248:1847892-1848077 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.3	-16.3	-15.7