ID:

dan_1503

 Coordinate:

scaffold_13248:928385-928667 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.2 -30.2 -30.2

Flybase annnotation

CDS [Dana\GF22432-cds]; CDS [Dana\GF22432-cds]; exon [dana_GLEANR_6401:4]; exon [dana_GLEANR_6401:3]; intron [Dana\GF22432-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATGAACTTGGATCCGAACTACTACCTGACCAATCGGATACCCTATACCAGTAATAGCCTCAGTCCAAAAAAAAACCCAAAACTGAAAAAAAAAAAAATTGTTTGGAACTTCAAGCATAACACGAACTTTAGGTTGAAAATTGAAAAAATACTGAAAATTAAAAAAAATACTGCATTTATAAAAACTTGTGATCCTTTTTTCGAAAAAAAAAAGTTAAAAATTTCTATAAATAATCAACCCACCGTTCGATTTATAAGAAGTTCTGTTCTAAAATCACTTCAAATCCTATAATATCATAGATCTCATCTATATATATTCTTGATCTCTTCCAGACAATAGCGGATTGGCGGAGGATCAGACGCGAAAGAGAGAAATCCGGCTG
**************************************************.........(((((.................)))))................((((((..(((((.......(((((....((((((.......................................((((((....))))))..(((((((......)))))))....................))))))....)))))........(((((..............)))))..........((((.((((((...))))))))))...)))))....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V055
head
 V106
head
.......................................................................AAAACCCAAAACTGAAAAAAAAAA................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GTTGGCGGAGGTTCAGACGC.................... 20 2 1 1.00 1 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................................TTGGCGGAGGTTCAAACGC.................... 19 2 1 1.00 1 0 0 1 0 0
..........................................................................ACCAAAAACTGAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................GCGAAAGAGAGAAATCCGGCC. 21 1 1 1.00 1 1 0 0 0 0
..........................TGACCAATCGGACAACCTATT................................................................................................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0
................AACTACTACCTGACCAATCG........................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
......................................................................................AAAAAAAAAAAATTGTTTGGGA................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TGGCGGAGGTTCAAACGC.................... 18 2 4 0.75 3 0 3 0 0 0
........................................................................................................................................................................................................................................................................................................................................................TTGGCGGAGGTTCAAACG..................... 18 2 5 0.60 3 0 3 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GTTGGCGGAGGTTCAAACGC.................... 20 3 10 0.60 6 0 3 2 0 1
..................................................................AAAAAAAAACCCAAAACGGA......................................................................................................................................................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................................................GAATTCACCCACCGTTCGATT................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0
................................................................CCAAAAAAAAACCCATAAC............................................................................................................................................................................................................................................................................................................ 19 1 3 0.33 1 1 0 0 0 0
.......................................................................AAAACCCAAAACAGAACAAAAAAAA............................................................................................................................................................................................................................................................................................... 25 2 5 0.20 1 1 0 0 0 0
.................................................................CAAACAAACACCCAAAACAGAAAAAA.................................................................................................................................................................................................................................................................................................... 26 3 5 0.20 1 1 0 0 0 0
....................................................................AAAGAAACCCAAAACAGAAAAACAAA................................................................................................................................................................................................................................................................................................. 26 3 5 0.20 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................TTGGCGGAGGTTCAAACGCC................... 20 3 7 0.14 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GATTGGGGGAGGATAAGA....................... 18 2 8 0.13 1 0 0 0 1 0
.....................................................................AAAAAAGCCAAACCTGAAAA...................................................................................................................................................................................................................................................................................................... 20 2 10 0.10 1 1 0 0 0 0
...................................................................AAAAAAAGACCAAACCTGAAAAAA.................................................................................................................................................................................................................................................................................................... 24 3 12 0.08 1 1 0 0 0 0
.......................................................................AAAACCCAAGACCGAAGAAAAAA................................................................................................................................................................................................................................................................................................. 23 3 13 0.08 1 1 0 0 0 0
..........................................................................ACCCAACATGGAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................. 24 3 13 0.08 1 1 0 0 0 0
...........AACAAAACTACTACCTGACC................................................................................................................................................................................................................................................................................................................................................................ 20 3 13 0.08 1 1 0 0 0 0
......................................................................AAATACACAAAACTGAAAAAAA................................................................................................................................................................................................................................................................................................... 22 2 17 0.06 1 1 0 0 0 0
................................................................................................AATTGTTTGGATCTTGACGC........................................................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 1 0 0 0
...............................................................................................................................................................................................ATCCTTTTTTACAAAAAAAA............................................................................................................................................................................ 20 2 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................ATTGGTGGAGGATCTGAAGC.................... 20 3 20 0.05 1 0 0 0 1 0
....................................................................................................................ATAACACGATCTTGAGTTT........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CTACTTGAACCTAGGCTTGATGATGGACTGGTTAGCCTATGGGATATGGTCATTATCGGAGTCAGGTTTTTTTTTGGGTTTTGACTTTTTTTTTTTTTAACAAACCTTGAAGTTCGTATTGTGCTTGAAATCCAACTTTTAACTTTTTTATGACTTTTAATTTTTTTTATGACGTAAATATTTTTGAACACTAGGAAAAAAGCTTTTTTTTTTCAATTTTTAAAGATATTTATTAGTTGGGTGGCAAGCTAAATATTCTTCAAGACAAGATTTTAGTGAAGTTTAGGATATTATAGTATCTAGAGTAGATATATATAAGAACTAGAGAAGGTCTGTTATCGCCTAACCGCCTCCTAGTCTGCGCTTTCTCTCTTTAGGCCGAC
**************************************************.........(((((.................)))))................((((((..(((((.......(((((....((((((.......................................((((((....))))))..(((((((......)))))))....................))))))....)))))........(((((..............)))))..........((((.((((((...))))))))))...)))))....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
 M044
female body
 M058
embryo
 V105
male body
........................................................................................................................GTGATTGCAATCCAACTTTGA.................................................................................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................CAACCGCCTCCAAGTTTGCG.................... 20 3 10 0.10 1 0 0 1 0 0
..........................................................................................................................................................................................AGCACTAGGAAAACAGCTCT................................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0
....................................................................................................................................................................................TGTTTGAGCACTAGGAAAA........................................................................................................................................................................................ 19 2 17 0.06 1 0 1 0 0 0
...................................................................................................................................................................................................AAGAAAGCTTGGTTTTTTCAA....................................................................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................CACCACTAGGAAAAAAGATT.................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0
............AGGATTGGTGATGGGCTGG................................................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1
...........................................................................................................................................................................................................................TTAATGATATTTATTAGTTC................................................................................................................................................ 20 2 20 0.05 1 0 1 0 0 0
..........................................................................................................................GCAGGAAATCCAACTTGTA.................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................AGCACTAGGAAAATAGCTC.................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13248:928335-928717 - dan_1503 GATGAACTTGG------ATCCGAACTACTAC---CTGACCAATCGGATACCCTA---TACCAGTAATA--GCCTCAGTCCAAA----------------AAAAAACCCAAAACTGAAAAAAAA-----------------------------------------------------------------------------------------------------AAAAATTGTTTGGAACTTCAAGCATAACACGAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGGTTGAA--------------------------------------------------------------------------AATTGAAAAAATACTGAAAATTAAAAA---AAATA-CTGCATTTATAAAAACTTGTGATCCTTTTTTCGAAAAAAAAAAGTTAAAAATTTCTATAAATAATCAACCCACCGTTCGATTTATAA-GAAGTTCTGTTCTAAAAT-CAC---------------------------------------------TTC----A------AATCCTA-----------------------------TAATATC--------------------------------ATAGATCTCAT------C---------TATA-T--ATAT---TCTTG---ATCTCT---------T-------CCAGACAATAGCGGATTGGCGGA-----GGATCAGACGCGAAAGAGAGAAATCCGGCTG
droBip1 scf7180000395920:37611-37962 + GATCACCATGG------ATCCGAACTACTAC---CTGACCAATCGGATACCCTA---TACCAGTAATA--GATTCAGTCCAAA----------------AA---AATAAAAAAAAGAAAGAAATCTATAAA--------------------------------------------------------------------------------------AATTTAAAAAAATTAAAAAGAACTTTAAAAATGACTCGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGATGAA-------------------------------------------------------AT------------------ATTG--------------------AAAAAAAATA-CT-----------------TAATTTTAATTTT-----AAAAAAGTTAAACATTTCCTAAAAAAATCATCTTTTAGTTCGAGTTATAA-AAAGTTCTATAATTGAAT-CTTTTGGAAA-------------------------------------------------------------------------------------------------------------------------------------------TTTTAGAATCTCATCTATA-T--ATGTCCATCTTA---ATCTCT---------T-------CCAGACAATAGCGGTATAGCGGA-----GGATCAGACACGGAAGCGGGAGATTCGATTG
droKik1 scf7180000302696:1337717-1338210 + GATGCAGTTGG------ACCCGGCGTACTAC---CTATCCAATCGGATATCTTACAACACCAGTAATA--GTCCCA-TCCAAA----------------GA---ACTTATAT------------CTATAGACCTTAAATAGC--------GCTAGAATTGAACT--CCTGCA------------------------------------------------------------------------------ACTCGAACTTGCTGATACAATCGATTTAAATAGTATTATATTTGTACATCAAATTATGGTTCTTTTCGTAATCCCAAATATGTATAATTAAATTTATTTCAAAGTTAAACGTAAAATTATTAAAATTAAACTTTTCATGTAACTATTTTGTCTATTGCTTTTATAAAAAGAATGAATCTTTTTGAATTCCAAGCTAT---------------------CCAAGTTCGAGT---------------------AGA---------------------------------------------------------------------------------------------------GTTAA---------------------------------------------------------------------------------------------TTCGA-ATCCCTTTCGAGTTACAG-AGAGTTCGACTTTTGGGGA---------------------------------------------AATTAAAGCACACACAA----TCG---GTT----------------------------AA--------------------------------TCGGATAACTAATC-----------------ATCTGTTC---TTATTCCTATTTCT---------T-------GCAGACAATAGCGGGATAGCGGA-----GGATCAGACGCGCAAACGCGAGATCCGGCTG
droFic1 scf7180000453829:1361922-1362070 - TAAATAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACAGTTCGACTTACAAAGGGGTTTCGCCTTGA-AAAG-A------------------------------------------TAG----GC---------------------------------TT-------TAGAATTTGG------------------------------------TAACTAAT-----------------CATATTT--CCACCATAT---TCTAT---------T-------GCAGACAATAGCGGTATTGCGGA-----GGATCAGACCCGTAAGCGCGAAATCCGGCTG
droEle1 scf7180000491006:509851-509924 + GATGCAGTTGG------ATCCCACGTACTAC---CTGACCAATCGGATGTCCTACAACACCAGTAATATAGCCTCGGTCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------
droRho1 scf7180000778010:45602-45703 + ACTTAAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATTTAAAAA---TCATA-TTTTATGTTTAAATGCATGGG-------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------TTGTGAAGCTACAATTAAA------------------------------------TATATAAA-----------------TATATTT--ATA-----------------------------------------------------------------------------ACAAGTGCA-ATT
droBia1 scf7180000302432:988468-988555 - GATGCAGTTGG------ACACCTCGTACTAC---CTGTCCAATCGGATGTCCTACAACACCAGTAATA--GCCTCGCTCCAGC----------------AGCGAGTCGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG
droTak1 scf7180000415395:275269-275432 + AAAATTTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGTTCGAGTTACAG-GCAGTTCCAATCTTTGATA---------------------------------------------GGT----TAGCGCTTTAGCGACCG-----------------------------TTTTGTG--------------------------------CTAATTATCTA------C---------TTTG-T--TTTT---CTTAA---ATCTCT---------T-------GTAGACAACAGCGGGATAGCGGA-----AGATCAGACCCGCAAGCGAGAGATCCGGCTG
droEug1 scf7180000409528:451464-451862 + GATGCCAATGG------ATCCCACGTACTAC---CTGTCCAATCGGATGCCCTACAACACCAGTAATA--GCCCCGGTCCAAT----------------CA---AC----TT--------------------CTTGAATTACATATAGGAGTTGG--TGGAACTTTTCTGTAAATCGATTTTTTCTTAAGTTGGTTGTAGACGATGATCCAG----------------------------------------------TTGCTCATGCGGTTGAAT-----------------GAACGTCT-------------------------------------------------------------------------------------------------------------------------------------AATCTCAGGCTAAACTTAAGTATTAACGTAAATCTCAAGATCAAGAAAAACTTCATAAAGATCAAATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAGATCGATTTACAG-GGAGTTCCACTTTAA-AGAA---------------------------------------------AT----CTACAATCTA----AAG---ACT----------------------ACAATTTA--------------------------------CTGATCAAT---------------------C-T--ATCT---TTTTGCATATATTT---------T-------ACAGACAATAGCGGGATAGCGGA-----GGATCAGACCCGTAAGCGAGAGATCCGGCTG
dm3 chrX:18269367-18269439 + GATGCAATTGG------ATCCCACGTACTAC---CTGTCCAATCGGATGTCCTACAACACCAGTAATA--GCCTCGCTCCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droSim2 x:17367441-17367581 + GTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAG-AGAGTTCCGCTTTGGGAGA---------------------------------------------TGT----GCACACATTG----CTG---ACT----------------------------GA--------------------------------CTGATCATCCAATCCTTGAATCCTTTT--------------------TTC---ATT---------T-------GCAGACAACAGCGGGATAGCGGA-----GGATCAGACCCGCAAGCGCGAGATCCGGCTG
droSec2 scaffold_8:579264-579404 + GTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAG-AGAGTTCCGCTTTGGGAGA---------------------------------------------CGT----GCACACATTG----CTG---ACT----------------------------GA--------------------------------CTGATCATCCAATCCTTGAATCCTTTT--------------------TTC---ATT---------T-------GCAGACAACAGCGGGATAGCGGA-----GGATCAAACCCGTAAGCGCGAGATCCGGCTG
droYak3 3R:25686943-25687109 + ACAAAGTTTAG------TT-GAAAGAATGAA---ATAATAAATTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATTAGAATAGAAGTAACAAATTGTTTAAAATTAGTGACAATTTGTAAAAGTAACATTTCAAATTTATCGAAAGCCT-------------------------------------------------------------------------------------------------------GTGTGCAAATTTTAA-GCACTTTCATTTTAAAAT-CAT---------------------------------------------TTC----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTAAAATA
droEre2 scaffold_4690:8590622-8590689 + TGTATCCTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------T-------ACAGACAACAGCGGCATAGCGGA-----GGACCAGACCCGTAAGCGCGAAATCCGGCTG
dp5 XR_group8:7996351-7996426 - TTTAAATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTATATTTAAAAAAATTTAACTATTTTTTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAATAAATAAAAATATATATAAAAAA
droPer2 scaffold_39:506698-506758 - TCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------ACAGACAACAGCGGCATAGCGGA-----GGATCAGACGCGCAAGCGGGAGATCAGACTG
droWil2 scf2_1100000004515:1511886-1512273 + CCTGCATATGGGTCCAGAATCGGCCTACTAT---ATATCCAATCGGATAGCCTACCAAACCAGTAATA--TCCATAC-CAAT-----------------------TCTAAGT------------CTAGGGA--------------------------------------------------------------------CACAATGAGCCAGCCTGAAGTTCGGAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAAGG--GCGCATTAGTTTTT--------GAAAATTATATGCAAATGACAAATGATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTATAG-TAT---CGGCCGATCAAT-ATTTTCCGAACTTCAGGATCTCATTGTTTTGATTCGAAAGAGAAATGT----GATAAC------AATTGTCTTCTAACTATGAAAATCTATCAATCTTGCTATAAATATATGTG-----------------------TA-TATAACCAATT-----------------ACCTCTGT---TCGTTC---TTTAT---------T-------ATAGATAACAGCGGGATTGCAGA-----GGATCAGTCGCGCAAGCGGGAGATACGTTTG
droVir3 scaffold_12928:4487326-4487478 - TCTAAAAATAA------CTAAAGCAA----------------------------------------------------------------------------------AAAATTAAAAAGAAA-----------------------------------------------------------------------------------------------------ACAAATTACTTCAAATTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTTAAA---------------------------------------------------------------------CTTTAAGCAAAGCCAAAGAACGGTTTAAGACAAAAAACAAAAACA-AA-----------------TGAACTTAAGCTA-----AATAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTT---TTTTT---------T-------G-------------------------------------------------------CGA
droMoj3 scaffold_6473:3890381-3890655 + dmo_666 GCTGCACATGGCGTCGGACCCGGGCTACTTT---CTATCCAGTCGGATAGCATACAATACCAGTAAAT--GCCACAAAATACA----------------A---------------AAAAAAAA-----------------------------------------------------------------------------------------------------AAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAAAATAAAATAAA-----------------------------------------------------------------AAATAAAAAAAGAAACAAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------TT-------TATAACTGAG--------CCAAATACTTATACTCTTCTTTCTTCTTCTTCTTCTCTCT----CTCTCT--------------------TCC---ACTCTCTGTGTCGGCACCTCTTAGATAACAGTGGCATTCCGGAGGAGAGGATCAGACACGCAAGCGAGAGATTCGACTG
droGri2 scaffold_15081:798026-798304 - GCTGCACATGGCGCCAGACCCGGCCTTCTATTTGCCATCCAATCGGATAGCATACAATACCAGTAAAT--GCCAAAAAC-A-TCAGCTACAAATAGCAAAA---AAAAAAAAAAAGAAAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATAAAATCAAAATCAAAATAAT-------AATAATAATACACAA-----------------------------------------------------------------------------------------AAATAAAA-----------------TGAATAG-------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------AT-------GAAAACTAA--------------------------------TTCTTGTTCTTCTCTTGCAACGCATTC--------------------TAT---TTG---------TGCA--ACACAGATAACAGCGGCATTGCGGA-----GGATCAGACGCTCAAGCGGCAAATACGATTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GATGAACTTGG------ATCCGAACTACTAC---CTGACCAATCGGATACCCTA---TACCAGTAATA--GCCTCAGTCCAAA----------------AAAAAACCCAAAACTGAAAAAAAA-----------------------------------------------------------------------------------------------------AAAAATTGTTTGGAACTTCAAGCATAACACGAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGGTTGAA--------------------------------------------------------------------------AATTGAAAAAATACTGAAAATTAAAAA---AAATA-CTGCATTTATAAAAACTTGTGATCCTTTTTTCGAAAAAAAAAAGTTAAAAATTTCTATAAATAATCAACCCACCGTTCGATTTATAA-GAAGTTCTGTTCTAAAAT-CAC---------------------------------------------TTC----A------AATCCTA-----------------------------TAATATC--------------------------------ATAGATCTCAT------C---------TATA-T--ATAT---TCTTG---ATCTCT---------T-------CCAGACAATAGCGGATTGGCGGA-----GGATCAGACGCGAAAGAGAGAAATCCGGCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................AAAACCCAAAACTGAAAAAAAA-----------------------------------------------------------------------------------------------------AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGAGAGAAATCCGGCC.2111.001010000
......................AACTACTAC---CTGACCAATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
GATCACCATGG------ATCCGAACTACTAC---CTGACCAATCGGATACCCTA---TACCAGTAATA--GATTCAGTCCAAA----------------AA---AATAAAAAAAAGAAAGAAATCTATAAA--------------------------------------------------------------------------------------AATTTAAAAAAATTAAAAAGAACTTTAAAAATGACTCGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGATGAA-------------------------------------------------------AT------------------ATTG--------------------AAAAAAAATA-CT-----------------TAATTTTAATTTT-----AAAAAAGTTAAACATTTCCTAAAAAAATCATCTTTTAGTTCGAGTTATAA-AAAGTTCTATAATTGAAT-CTTTTGGAAA-------------------------------------------------------------------------------------------------------------------------------------------TTTTAGAATCTCATCTATA-T--ATGTCCATCTTA---ATCTCT---------T-------CCAGACAATAGCGGTATAGCGGA-----GGATCAGACACGGAAGCGGGAGATTCGATTGSizeHit CountTotal NormTotal
No Reads
droKik1
GATGCAGTTGG------ACCCGGCGTACTAC---CTATCCAATCGGATATCTTACAACACCAGTAATA--GTCCCA-TCCAAA----------------GA---ACTTATAT------------CTATAGACCTTAAATAGC--------GCTAGAATTGAACT--CCTGCA------------------------------------------------------------------------------ACTCGAACTTGCTGATACAATCGATTTAAATAGTATTATATTTGTACATCAAATTATGGTTCTTTTCGTAATCCCAAATATGTATAATTAAATTTATTTCAAAGTTAAACGTAAAATTATTAAAATTAAACTTTTCATGTAACTATTTTGTCTATTGCTTTTATAAAAAGAATGAATCTTTTTGAATTCCAAGCTAT---------------------CCAAGTTCGAGT---------------------AGA---------------------------------------------------------------------------------------------------GTTAA---------------------------------------------------------------------------------------------TTCGA-ATCCCTTTCGAGTTACAG-AGAGTTCGACTTTTGGGGA---------------------------------------------AATTAAAGCACACACAA----TCG---GTT----------------------------AA--------------------------------TCGGATAACTAATC-----------------ATCTGTTC---TTATTCCTATTTCT---------T-------GCAGACAATAGCGGGATAGCGGA-----GGATCAGACGCGCAAACGCGAGATCCGGCTGSizeHit CountTotal NormTotal
No Reads
droFic1
TAAATAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACAGTTCGACTTACAAAGGGGTTTCGCCTTGA-AAAG-A------------------------------------------TAG----GC---------------------------------TT-------TAGAATTTGG------------------------------------TAACTAAT-----------------CATATTT--CCACCATAT---TCTAT---------T-------GCAGACAATAGCGGTATTGCGGA-----GGATCAGACCCGTAAGCGCGAAATCCGGCTGSizeHit CountTotal NormTotal
No Reads
droEle1
GATGCAGTTGG------ATCCCACGTACTAC---CTGACCAATCGGATGTCCTACAACACCAGTAATATAGCCTCGGTCCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACTTAAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGAAATTTAAAAA---TCATA-TTTTATGTTTAAATGCATGGG-------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------TTGTGAAGCTACAATTAAA------------------------------------TATATAAA-----------------TATATTT--ATA-----------------------------------------------------------------------------ACAAGTGCA-ATTSizeHit CountTotal NormTotal
No Reads
droBia1
GATGCAGTTGG------ACACCTCGTACTAC---CTGTCCAATCGGATGTCCTACAACACCAGTAATA--GCCTCGCTCCAGC----------------AGCGAGTCGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAATTTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGTTCGAGTTACAG-GCAGTTCCAATCTTTGATA---------------------------------------------GGT----TAGCGCTTTAGCGACCG-----------------------------TTTTGTG--------------------------------CTAATTATCTA------C---------TTTG-T--TTTT---CTTAA---ATCTCT---------T-------GTAGACAACAGCGGGATAGCGGA-----AGATCAGACCCGCAAGCGAGAGATCCGGCTGSizeHit CountTotal NormTotal
No Reads
droEug1
GATGCCAATGG------ATCCCACGTACTAC---CTGTCCAATCGGATGCCCTACAACACCAGTAATA--GCCCCGGTCCAAT----------------CA---AC----TT--------------------CTTGAATTACATATAGGAGTTGG--TGGAACTTTTCTGTAAATCGATTTTTTCTTAAGTTGGTTGTAGACGATGATCCAG----------------------------------------------TTGCTCATGCGGTTGAAT-----------------GAACGTCT-------------------------------------------------------------------------------------------------------------------------------------AATCTCAGGCTAAACTTAAGTATTAACGTAAATCTCAAGATCAAGAAAAACTTCATAAAGATCAAATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAGATCGATTTACAG-GGAGTTCCACTTTAA-AGAA---------------------------------------------AT----CTACAATCTA----AAG---ACT----------------------ACAATTTA--------------------------------CTGATCAAT---------------------C-T--ATCT---TTTTGCATATATTT---------T-------ACAGACAATAGCGGGATAGCGGA-----GGATCAGACCCGTAAGCGAGAGATCCGGCTGSizeHit CountTotal NormTotal
No Reads
dm3
GATGCAATTGG------ATCCCACGTACTAC---CTGTCCAATCGGATGTCCTACAACACCAGTAATA--GCCTCGCTCCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................AATCGGATGTCCTACAACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCAATCGGATGTCCTACAACACCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTAC---CTGTCCAATCGGATGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTCCAATCGGATGTCCTACAACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TAC---CTGTCCAATCGGATGTCCTACAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................TCGGATGTCCTACAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACTAC---CTGTCCAATCGGATGTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TCGGATGTCCTACAACACCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAG-AGAGTTCCGCTTTGGGAGA---------------------------------------------TGT----GCACACATTG----CTG---ACT----------------------------GA--------------------------------CTGATCATCCAATCCTTGAATCCTTTT--------------------TTC---ATT---------T-------GCAGACAACAGCGGGATAGCGGA-----GGATCAGACCCGCAAGCGCGAGATCCGGCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGCGGA-----GGATCAGAC......................2211.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGA---------------------------------------------TGT----GCACACATTG----CTG---ACT----------------------------G.....................................................................................................................................................................2511.00100100000000000000
droSec2
GTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAG-AGAGTTCCGCTTTGGGAGA---------------------------------------------CGT----GCACACATTG----CTG---ACT----------------------------GA--------------------------------CTGATCATCCAATCCTTGAATCCTTTT--------------------TTC---ATT---------T-------GCAGACAACAGCGGGATAGCGGA-----GGATCAAACCCGTAAGCGCGAGATCCGGCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACAAAGTTTAG------TT-GAAAGAATGAA---ATAATAAATTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATTAGAATAGAAGTAACAAATTGTTTAAAATTAGTGACAATTTGTAAAAGTAACATTTCAAATTTATCGAAAGCCT-------------------------------------------------------------------------------------------------------GTGTGCAAATTTTAA-GCACTTTCATTTTAAAAT-CAT---------------------------------------------TTC----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTAAAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGTATCCTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------T-------ACAGACAACAGCGGCATAGCGGA-----GGACCAGACCCGTAAGCGCGAAATCCGGCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-----GGACCAGACCCGTAAGCGCGAA.........2511.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAAGCGCGAAATCCGGCT.2211.0010100000
dp5
TTTAAATAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTATATTTAAAAAAATTTAACTATTTTTTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAATAAATAAAAATATATATAAAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------ACAGACAACAGCGGCATAGCGGA-----GGATCAGACGCGCAAGCGGGAGATCAGACTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCTGCATATGGGTCCAGAATCGGCCTACTAT---ATATCCAATCGGATAGCCTACCAAACCAGTAATA--TCCATAC-CAAT-----------------------TCTAAGT------------CTAGGGA--------------------------------------------------------------------CACAATGAGCCAGCCTGAAGTTCGGAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAAAGG--GCGCATTAGTTTTT--------GAAAATTATATGCAAATGACAAATGATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTTATAG-TAT---CGGCCGATCAAT-ATTTTCCGAACTTCAGGATCTCATTGTTTTGATTCGAAAGAGAAATGT----GATAAC------AATTGTCTTCTAACTATGAAAATCTATCAATCTTGCTATAAATATATGTG-----------------------TA-TATAACCAATT-----------------ACCTCTGT---TCGTTC---TTTAT---------T-------ATAGATAACAGCGGGATTGCAGA-----GGATCAGTCGCGCAAGCGGGAGATACGTTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCAGA-----GGATCAGTCG.....................1911.00100100
........................CTACTAT---ATATCCAATCGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCAAGCGGGAGATACGTTTG2311.00100100
CCTGCATATGGGTCCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................AGT------------CTAGGGA--------------------------------------------------------------------CACAATGAGCCAGCCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATT-----------------ACCTCTGT---TCGTT.....................................................................................2011.00100001
..TGCATATGGGTCCAGAATCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGCGGGATTGCAGA-----GGATCAGT.......................2611.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGTCGCGCAAGCGGGAGAT.......2311.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----GGATCAGTCGCGCAAGCGGGA..........2311.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGCGGGAGATACGTTTG2211.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGCGGGATTGCAGA-----GGATCA.........................2511.00100100
........................CTACTAT---ATATCCAATCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGATTGCAGA-----GGATCAGT.......................2211.00100100
droVir3
TCTAAAAATAA------CTAAAGCAA----------------------------------------------------------------------------------AAAATTAAAAAGAAA-----------------------------------------------------------------------------------------------------ACAAATTACTTCAAATTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTTAAA---------------------------------------------------------------------CTTTAAGCAAAGCCAAAGAACGGTTTAAGACAAAAAACAAAAACA-AA-----------------TGAACTTAAGCTA-----AATAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTT---TTTTT---------T-------G-------------------------------------------------------CGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GCTGCACATGGCGTCGGACCCGGGCTACTTT---CTATCCAGTCGGATAGCATACAATACCAGTAAAT--GCCACAAAATACA----------------A---------------AAAAAAAA-----------------------------------------------------------------------------------------------------AAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAAAATAAAATAAA-----------------------------------------------------------------AAATAAAAAAAGAAACAAACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------TT-------TATAACTGAG--------CCAAATACTTATACTCTTCTTTCTTCTTCTTCTTCTCTCT----CTCTCT--------------------TCC---ACTCTCTGTGTCGGCACCTCTTAGATAACAGTGGCATTCCGGAGGAGAGGATCAGACACGCAAGCGAGAGATTCGACTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGCGAGAGATTCGAC..1911.001000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGACACGCAAGCGAGAGATT......2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGTGGCATTCCGGA....................................1911.001100000
...GCACATGGCGTCGGACCCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................CTACTTT---CTATCCAGTCGGATAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTCCGGAGGATCA..............................19160.061100000
droGri2
GCTGCACATGGCGCCAGACCCGGCCTTCTATTTGCCATCCAATCGGATAGCATACAATACCAGTAAAT--GCCAAAAAC-A-TCAGCTACAAATAGCAAAA---AAAAAAAAAAAGAAAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATAAAATCAAAATCAAAATAAT-------AATAATAATACACAA-----------------------------------------------------------------------------------------AAATAAAA-----------------TGAATAG-------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------AT-------GAAAACTAA--------------------------------TTCTTGTTCTTCTCTTGCAACGCATTC--------------------TAT---TTG---------TGCA--ACACAGATAACAGCGGCATTGCGGA-----GGATCAGACGCTCAAGCGGCAAATACGATTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:09 AM