dan_1479

exon [dana_GLEANR_1833:2]; exon [dana_GLEANR_1833:3]; CDS [Dana\GF17062-cds]; CDS [Dana\GF17062-cds]; intron [Dana\GF17062-in]; Antisense to intron [Dana\GF14448-in]

##################################################--------------------------------------------------------------------################################################## TCTGCGATGAATTTTCTGAACCTGCTGTACTTAATTCCTCATCTGGCCCGGTATTTGGATTATTGTCACCGTTGCCGATTAAGTCAGCCCCCAGGTCTGACTCCATTCTGGACTCTAGCCTGCACCCTTCCAATGGGGGAGGTCGTCCGCATCGCTGCTGCCGCCGTC ************************************************...((...................((((...((((((((....)).))))))....)).)).....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V055 head	V105 male body	V039 embryo	V106 head
.................................................................................................................................................TCCGCATCGCTGCTGCCGCCGT.	22	0	20	2.60	52	52	0	0	0	0	0
.................................................................................................................................................TCCGCATCGCTGCTGCCGCCG..	21	0	20	1.05	21	21	0	0	0	0	0
......................................TCATCTGGCCCGGTATTTGGATTATTGT......................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
........................................................................TGCCGATTAAGTCAGCCCCCAGGTCT......................................................................	26	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................CCAGGTCTGACTCCATTCTGGAC.......................................................	23	0	20	0.80	16	11	5	0	0	0	0
..........................................................................................CCAGGTCTGACTCCATTCTGGACT......................................................	24	0	20	0.50	10	0	10	0	0	0	0
..........................................................................................CCAGGTCTGACTCCATTCTGGACTCT....................................................	26	0	20	0.30	6	6	0	0	0	0	0
.........................................................................................CCCAGGTCTGACTCCATTCTGGACTC.....................................................	26	0	20	0.25	5	4	1	0	0	0	0
.................................................................................................TGACTCCATTCTGGACTCTAGCCTG..............................................	25	0	20	0.25	5	5	0	0	0	0	0
...............................................................................................TCTGACTCCATTCTGGACTCTAGCC................................................	25	0	20	0.20	4	0	4	0	0	0	0
......ATGAATATTCTGAGCCCGCT..............................................................................................................................................	20	3	5	0.20	1	0	0	1	0	0	0
...............................................................................................TCTGACTCCATTCTGGACTCTAGCCTG..............................................	27	0	20	0.20	4	4	0	0	0	0	0
...............................................................................................................................TTCCAATGGGGGAGGTCGTCCGCAT................	25	0	5	0.20	1	1	0	0	0	0	0
.....................................................................................................................................TGGGGGAGGTCGTCCGCATCGCTGCT.........	26	0	6	0.17	1	1	0	0	0	0	0
.......................................................TGGATTATTGTCACCGTTGCCGAT.........................................................................................	24	0	20	0.15	3	3	0	0	0	0	0
..................................................................................................GACTCCATTCTGGACTCTAGCCTGC.............................................	25	0	20	0.15	3	2	1	0	0	0	0
...........................................................................................................CTGGACTCTAGCCTGCACCCTTCC.....................................	24	0	20	0.15	3	3	0	0	0	0	0
.................................................................TCACCGTTGCCGATTAAGTCA..................................................................................	21	0	20	0.15	3	3	0	0	0	0	0
......................................................................................................CCATTCTGGACTCTAGCCTGCACC..........................................	24	0	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................TTCCAATGGGGGAGGTCGT......................	19	0	8	0.13	1	0	0	0	1	0	0
...........................................................................................CAGGTCTGACTCCATTCTGGA........................................................	21	0	20	0.10	2	2	0	0	0	0	0
....................................................ATTTGGATTATTGTCACCGTTGCCGAT.........................................................................................	27	0	20	0.10	2	2	0	0	0	0	0
.............................................................................................................................................GTCGTCCGCATCGCTGCTGCCGC....	23	0	20	0.10	2	2	0	0	0	0	0
....................................................................................................CTCCATTCTGGACTCTAGCCTGCACC..........................................	26	0	20	0.10	2	1	1	0	0	0	0
...........................................................................................................CTGGACTCTAGCCTGCACCCTTC......................................	23	0	20	0.10	2	0	2	0	0	0	0
..................................................................................................GACTCCATTCTGGACTCTAGCCTGCACC..........................................	28	0	20	0.10	2	0	2	0	0	0	0
...................................................................................................................TAGCCTGCACCCTTCCAATGGG...............................	22	0	20	0.10	2	1	1	0	0	0	0
.........................................................................................CCCAGGTCTGACTCCATTCTGGACTCT....................................................	27	0	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................GGGAGGTCGTCCGCATCGCTG...........	21	0	20	0.10	2	2	0	0	0	0	0
............................................................TATTGTCACCGTTGCCGATTAAGTC...................................................................................	25	0	20	0.10	2	1	1	0	0	0	0
......................................................................................................CCATTCTGGACTCTAGCCTGCAC...........................................	23	0	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................TGGGGAAGGTCGGGCGCATC...............	20	3	12	0.08	1	0	0	1	0	0	0
.....................................................................................................................................TAGGGACGGTCGTCCGCATC...............	20	3	12	0.08	1	0	0	1	0	0	0
............................................................TATTGTCACCGTTGCCGATTA.......................................................................................	21	0	20	0.05	1	0	1	0	0	0	0
.......................................................TGGATTATTGTCACCGTTGCCGA..........................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
...........................................................................................................CTGGACTCTAGCCTGCACCCTTCCA....................................	25	0	20	0.05	1	1	0	0	0	0	0
..........................................GAGGCCCTGTATTTGGATT...........................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
............................................................TATTGTCACCGTTGCCGATTAAGT....................................................................................	24	0	20	0.05	1	1	0	0	0	0	0
...........................................................................................................CTGGACTCTAGCCTGCACCCTT.......................................	22	0	20	0.05	1	0	1	0	0	0	0
........................................................GGATTATTGTCACCGTTGCCGAT.........................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................CCGCATCGCTGCTGCCGCCGTC	22	0	20	0.05	1	1	0	0	0	0	0
..........................................................................................CCATGTCTGACTCCATTCTGGACT......................................................	24	1	20	0.05	1	0	1	0	0	0	0
......................................................................................................CCATTCTGGACTCTAGCCTGCACCCT........................................	26	0	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................GTCGTCCGCATCGCTGCTGCC......	21	0	20	0.05	1	1	0	0	0	0	0
.................................................................................................................TCTAGCCTGCACCCTTCCAATGGG...............................	24	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................TCCGCATCGCTGCTGCCGCCGTA	23	1	20	0.05	1	0	1	0	0	0	0
...........................................................................................................CTGGACTCTAGCCTGCACCCT........................................	21	0	20	0.05	1	1	0	0	0	0	0
...............................................................TGTCACCGTTGCCGATTAAGTCA..................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
.....................................................................................................TTCATTCTGGACTCTAGCCTGCACCC.........................................	26	1	20	0.05	1	0	1	0	0	0	0
........................................................................................................ATTCTGGACTCTAGCCTGCACC..........................................	22	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................TGACTCCATTCTGGCCTCTAGCCTGC.............................................	26	1	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................TCCGCATCACTGCTGCCGCCGT.	22	1	20	0.05	1	1	0	0	0	0	0
.....................................................TTTGGATTATTGTCACCGTTGC.............................................................................................	22	0	20	0.05	1	0	1	0	0	0	0
.........................................................................................CCCAGGTCTGACTCCATTCTGGACT......................................................	25	0	20	0.05	1	0	1	0	0	0	0
.......................................................TGGATTATTGTCACCGTTGCCGATTAA......................................................................................	27	0	20	0.05	1	1	0	0	0	0	0
..........................................................................................CCAGGTCTGACTCCATTCTGGACTCTAGC.................................................	29	0	20	0.05	1	1	0	0	0	0	0
............................................................................................................TGGACTCTAGCCTGCACCCTTCCAATG.................................	27	0	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................GCCTGCACCCTTCCAATGGGGG.............................	22	0	20	0.05	1	1	0	0	0	0	0
......................................................................................................CCATTCTGGACTCTAGCCTGCACCCTTC......................................	28	0	20	0.05	1	1	0	0	0	0	0
....................................................ATTTGGATTATTGTCACCGTTGC.............................................................................................	23	0	20	0.05	1	0	1	0	0	0	0
..........................................................................................CCAGGTCTGACTCCATTCTGGACTCTAG..................................................	28	0	20	0.05	1	0	1	0	0	0	0
..............................................................TTGTCACCGTTGCCGATTAAGTCAG.................................................................................	25	0	20	0.05	1	1	0	0	0	0	0
..........................................................ATTATTGTCACCGTTGCCGATTAAG.....................................................................................	25	0	20	0.05	1	1	0	0	0	0	0
...........................................................................................................CTGGACTCTAGCCTGCACCCTTCCAA...................................	26	0	20	0.05	1	1	0	0	0	0	0
...........................................................................................................CGGGACTCTAGCCTGCACCC.........................................	20	1	20	0.05	1	0	1	0	0	0	0
.................................................................................................TGACTCCATTCTGGACTCTAGCCT...............................................	24	0	20	0.05	1	0	1	0	0	0	0
.........................................................................................................TTCTGGACTCTAGCCTGCACCCT........................................	23	0	20	0.05	1	0	1	0	0	0	0
....................................................ATTTGGATTATTGTCACCGTTGCCGA..........................................................................................	26	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................................TCTAGCCTGCACCCTTCCAATGGGGG.............................	26	0	20	0.05	1	0	1	0	0	0	0
.........................................................................................................TTCTGGACTCTAGCCTGCACCCTTT......................................	25	1	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................CGTCCGCATCGCTGCTGCCGCCGTC	25	0	20	0.05	1	1	0	0	0	0	0
.................................................................................................TGACTCCATTCTGGACTCTAGCCTGC.............................................	26	0	20	0.05	1	0	1	0	0	0	0
..................................................................................................................CTAGCCTGTACCCTTCCAATGGGG..............................	24	1	20	0.05	1	1	0	0	0	0	0
..................................................................................................GACTCCATTCTGGACTCTAGCCTG..............................................	24	0	20	0.05	1	1	0	0	0	0	0
........................................................GGATTATTGTCACCGTTGC.............................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
.........................................................................................................TTCTGGACTCTAGCCTGCACCCTTC......................................	25	0	20	0.05	1	1	0	0	0	0	0
..........................................................................................................TCTGGACTCTAGCCTGCACCCT........................................	22	0	20	0.05	1	1	0	0	0	0	0
........................................................................................................ATCCTGGACTCTAGCCTGCACCCTT.......................................	25	1	20	0.05	1	0	1	0	0	0	0
.....................................................TTTGGATTATTGTCACCGTTGCCGAT.........................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................GAGGTCGTCCGCATCGCTGCTGCC......	24	0	20	0.05	1	0	0	0	0	0	1
..................................................................................................GACTCCATTCTGGACTCTAGC.................................................	21	0	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................TCAGCATCGCTGCTGCCGCC...	20	1	20	0.05	1	0	1	0	0	0	0
.................................................................................................TGACTCCATTCTGGACTCTAGCCTGCAC...........................................	28	0	20	0.05	1	0	1	0	0	0	0
..................................................................................................................ATAGCCTGCACCCTTCCAATGGGGG.............................	25	1	20	0.05	1	1	0	0	0	0	0
....................................................................................................CTCCATTCTGGACTCTAGCCTGCACCC.........................................	27	0	20	0.05	1	0	1	0	0	0	0
...................................................................................................ACTCCATTCTGGACTCTAGCCTGCACCC.........................................	28	0	20	0.05	1	1	0	0	0	0	0
..............................................................................................................GACTCTAGCCTGCACCCTTCCAAC..................................	24	1	20	0.05	1	0	1	0	0	0	0
...................................................................................................ACTCCATTCTGGACTCTAGCCTGC.............................................	24	0	20	0.05	1	1	0	0	0	0	0

##################################################--------------------------------------------------------------------##################################################
TCTGCGATGAATTTTCTGAACCTGCTGTACTTAATTCCTCATCTGGCCCGGTATTTGGATTATTGTCACCGTTGCCGATTAAGTCAGCCCCCAGGTCTGACTCCATTCTGGACTCTAGCCTGCACCCTTCCAATGGGGGAGGTCGTCCGCATCGCTGCTGCCGCCGTC
**************************************************...((...................((((...((((((((....)).))))))....)).)).....))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M044
female body

M058
embryo

V055
head

V105
male body

V039
embryo

V106
head

.................................................................................................................................................TCCGCATCGCTGCTGCCGCCGT.

2.60

.................................................................................................................................................TCCGCATCGCTGCTGCCGCCG..

1.05

......................................TCATCTGGCCCGGTATTTGGATTATTGT......................................................................................................

1.00

........................................................................TGCCGATTAAGTCAGCCCCCAGGTCT......................................................................

1.00

..........................................................................................CCAGGTCTGACTCCATTCTGGAC.......................................................

0.80

..........................................................................................CCAGGTCTGACTCCATTCTGGACT......................................................

0.50

..........................................................................................CCAGGTCTGACTCCATTCTGGACTCT....................................................

0.30

.........................................................................................CCCAGGTCTGACTCCATTCTGGACTC.....................................................

0.25

.................................................................................................TGACTCCATTCTGGACTCTAGCCTG..............................................

0.25

...............................................................................................TCTGACTCCATTCTGGACTCTAGCC................................................

0.20

......ATGAATATTCTGAGCCCGCT..............................................................................................................................................

0.20

...............................................................................................TCTGACTCCATTCTGGACTCTAGCCTG..............................................

0.20

...............................................................................................................................TTCCAATGGGGGAGGTCGTCCGCAT................

0.20

.....................................................................................................................................TGGGGGAGGTCGTCCGCATCGCTGCT.........

0.17

.......................................................TGGATTATTGTCACCGTTGCCGAT.........................................................................................

0.15

..................................................................................................GACTCCATTCTGGACTCTAGCCTGC.............................................

0.15

...........................................................................................................CTGGACTCTAGCCTGCACCCTTCC.....................................

0.15

.................................................................TCACCGTTGCCGATTAAGTCA..................................................................................

0.15

......................................................................................................CCATTCTGGACTCTAGCCTGCACC..........................................

0.15

...............................................................................................................................TTCCAATGGGGGAGGTCGT......................

0.13

...........................................................................................CAGGTCTGACTCCATTCTGGA........................................................

0.10

....................................................ATTTGGATTATTGTCACCGTTGCCGAT.........................................................................................

0.10

.............................................................................................................................................GTCGTCCGCATCGCTGCTGCCGC....

0.10

....................................................................................................CTCCATTCTGGACTCTAGCCTGCACC..........................................

0.10

...........................................................................................................CTGGACTCTAGCCTGCACCCTTC......................................

0.10

..................................................................................................GACTCCATTCTGGACTCTAGCCTGCACC..........................................

0.10

...................................................................................................................TAGCCTGCACCCTTCCAATGGG...............................

0.10

.........................................................................................CCCAGGTCTGACTCCATTCTGGACTCT....................................................

0.10

........................................................................................................................................GGGAGGTCGTCCGCATCGCTG...........

0.10

............................................................TATTGTCACCGTTGCCGATTAAGTC...................................................................................

0.10

......................................................................................................CCATTCTGGACTCTAGCCTGCAC...........................................

0.10

.....................................................................................................................................TGGGGAAGGTCGGGCGCATC...............

0.08

.....................................................................................................................................TAGGGACGGTCGTCCGCATC...............

0.08

............................................................TATTGTCACCGTTGCCGATTA.......................................................................................

0.05

.......................................................TGGATTATTGTCACCGTTGCCGA..........................................................................................

0.05

...........................................................................................................CTGGACTCTAGCCTGCACCCTTCCA....................................

0.05

..........................................GAGGCCCTGTATTTGGATT...........................................................................................................

0.05

............................................................TATTGTCACCGTTGCCGATTAAGT....................................................................................

0.05

...........................................................................................................CTGGACTCTAGCCTGCACCCTT.......................................

0.05

........................................................GGATTATTGTCACCGTTGCCGAT.........................................................................................

0.05

..................................................................................................................................................CCGCATCGCTGCTGCCGCCGTC

0.05

..........................................................................................CCATGTCTGACTCCATTCTGGACT......................................................

0.05

......................................................................................................CCATTCTGGACTCTAGCCTGCACCCT........................................

0.05

.............................................................................................................................................GTCGTCCGCATCGCTGCTGCC......

0.05

.................................................................................................................TCTAGCCTGCACCCTTCCAATGGG...............................

0.05

.................................................................................................................................................TCCGCATCGCTGCTGCCGCCGTA

0.05

...........................................................................................................CTGGACTCTAGCCTGCACCCT........................................

0.05

...............................................................TGTCACCGTTGCCGATTAAGTCA..................................................................................

0.05

.....................................................................................................TTCATTCTGGACTCTAGCCTGCACCC.........................................

0.05

........................................................................................................ATTCTGGACTCTAGCCTGCACC..........................................

0.05

.................................................................................................TGACTCCATTCTGGCCTCTAGCCTGC.............................................

0.05

.................................................................................................................................................TCCGCATCACTGCTGCCGCCGT.

0.05

.....................................................TTTGGATTATTGTCACCGTTGC.............................................................................................

0.05

.........................................................................................CCCAGGTCTGACTCCATTCTGGACT......................................................

0.05

.......................................................TGGATTATTGTCACCGTTGCCGATTAA......................................................................................

0.05

..........................................................................................CCAGGTCTGACTCCATTCTGGACTCTAGC.................................................

0.05

............................................................................................................TGGACTCTAGCCTGCACCCTTCCAATG.................................

0.05

.....................................................................................................................GCCTGCACCCTTCCAATGGGGG.............................

0.05

......................................................................................................CCATTCTGGACTCTAGCCTGCACCCTTC......................................

0.05

....................................................ATTTGGATTATTGTCACCGTTGC.............................................................................................

0.05

..........................................................................................CCAGGTCTGACTCCATTCTGGACTCTAG..................................................

0.05

..............................................................TTGTCACCGTTGCCGATTAAGTCAG.................................................................................

0.05

..........................................................ATTATTGTCACCGTTGCCGATTAAG.....................................................................................

0.05

...........................................................................................................CTGGACTCTAGCCTGCACCCTTCCAA...................................

0.05

...........................................................................................................CGGGACTCTAGCCTGCACCC.........................................

0.05

.................................................................................................TGACTCCATTCTGGACTCTAGCCT...............................................

0.05

.........................................................................................................TTCTGGACTCTAGCCTGCACCCT........................................

0.05

....................................................ATTTGGATTATTGTCACCGTTGCCGA..........................................................................................

0.05

.................................................................................................................TCTAGCCTGCACCCTTCCAATGGGGG.............................

0.05

.........................................................................................................TTCTGGACTCTAGCCTGCACCCTTT......................................

0.05

...............................................................................................................................................CGTCCGCATCGCTGCTGCCGCCGTC

0.05

.................................................................................................TGACTCCATTCTGGACTCTAGCCTGC.............................................

0.05

..................................................................................................................CTAGCCTGTACCCTTCCAATGGGG..............................

0.05

..................................................................................................GACTCCATTCTGGACTCTAGCCTG..............................................

0.05

........................................................GGATTATTGTCACCGTTGC.............................................................................................

0.05

.........................................................................................................TTCTGGACTCTAGCCTGCACCCTTC......................................

0.05

..........................................................................................................TCTGGACTCTAGCCTGCACCCT........................................

0.05

........................................................................................................ATCCTGGACTCTAGCCTGCACCCTT.......................................

0.05

.....................................................TTTGGATTATTGTCACCGTTGCCGAT.........................................................................................

0.05

..........................................................................................................................................GAGGTCGTCCGCATCGCTGCTGCC......

0.05

..................................................................................................GACTCCATTCTGGACTCTAGC.................................................

0.05

.................................................................................................................................................TCAGCATCGCTGCTGCCGCC...

0.05

.................................................................................................TGACTCCATTCTGGACTCTAGCCTGCAC...........................................

0.05

..................................................................................................................ATAGCCTGCACCCTTCCAATGGGGG.............................

0.05

....................................................................................................CTCCATTCTGGACTCTAGCCTGCACCC.........................................

0.05

...................................................................................................ACTCCATTCTGGACTCTAGCCTGCACCC.........................................

0.05

..............................................................................................................GACTCTAGCCTGCACCCTTCCAAC..................................

0.05

...................................................................................................ACTCCATTCTGGACTCTAGCCTGC.............................................

0.05

AGACGCTACTTAAAAGACTTGGACGACATGAATTAAGGAGTAGACCGGGCCATAAACCTAATAACAGTGGCAACGGCTAATTCAGTCGGGGGTCCAGACTGAGGTAAGACCTGAGATCGGACGTGGGAAGGTTACCCCCTCCAGCAGGCGTAGCGACGACGGCGGCAG ************************************************...((...................((((...((((((((....)).))))))....)).)).....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V106 head
.................................................................................................................................GGTTACCCCCTCCAGCAGGCGTAGCG.............	26	0	5	1.60	8	8	0	0
......................................................................................CGGGGGTCCAGACTGAGGTAAGACC.........................................................	25	0	1	1.00	1	0	1	0
.......................................GTAGACCGGGCCATAAACCTAATAAC.......................................................................................................	26	0	1	1.00	1	1	0	0
....................................................................GGCAACGGCTAATTCAGTCGGGGGTCC.........................................................................	27	0	1	1.00	1	1	0	0
.....................................GAGTAGACCGGGCCATAAACCTAAT..........................................................................................................	25	0	1	1.00	1	1	0	0
..................................................................................................................................GTTACCCCCTCCAGCAGGCGTAGCG.............	25	0	5	0.60	3	2	1	0
...............................................................................................................................AAGGTTACCCCCTCCAGCAGGCGT.................	24	0	5	0.20	1	1	0	0
...............................................................................................................................AAGGTTACCCCCTCCAGCAGGCGTAGCG.............	28	0	5	0.20	1	1	0	0
...............................................................................................................................AAGGTTACCCCCTCCAGCGGGCGTAGC..............	27	1	5	0.20	1	1	0	0
...............................................................................................................................AAGGTTACCCCCTCCAGCATGCGTAGCG.............	28	1	5	0.20	1	1	0	0
................................................................................................................................AGGTTACCCCCTCCAGCAGGCGTAGCG.............	27	0	5	0.20	1	1	0	0
...................................................................................................................................TTACCCCCTCCAGCAGGCGTAGC..............	23	0	6	0.17	1	1	0	0
.....................................................................................................................................ACCCCCTCCAGCAGGCGTAGCG.............	22	0	6	0.17	1	1	0	0
....................................................................................................................................TACCCCCTCCAGCAGGCGTAGCGACG..........	26	0	6	0.17	1	1	0	0
......................................................................................................................................CCCCCTCCAGCAGGCGTAGCG.............	21	0	20	0.15	3	3	0	0
..............................................................................................................................GAAGGTTACCCCCTCCAGCAGGCG..................	24	0	8	0.13	1	1	0	0
..............................................................................................................................................AGCAGGCGTAGCGACGACGGCGGCAG	26	0	20	0.10	2	2	0	0
...............................................................................................................TGAGATCGGACGTGGGAAGGTTACCC...............................	26	0	20	0.10	2	2	0	0
..................................................................................................................................................GGCGTAGCGACGACGGCGG...	19	0	20	0.10	2	2	0	0
.......................................................................................................................................CCCCTCCAGCAGGCGTAGCGA............	21	0	20	0.10	2	2	0	0
............................................................................................................................................TCAGCAGGCGTAGCGACGACG.......	21	1	20	0.05	1	1	0	0
................................................................................................................................................CAGGCGTAGCGACGACGGCGGCA.	23	0	20	0.05	1	1	0	0
..................................................................................................................................................GGCGTAGCGACGACGGCGGCAG	22	0	20	0.05	1	1	0	0
..............................................................................................................CTGAGATCGGACGTGGGAAGGTTAC.................................	25	0	20	0.05	1	0	1	0
..............................................................................................CAGACTGAGGTAAGACCTGAGAT...................................................	23	0	20	0.05	1	0	1	0
........................................................................................................TAAGACCTGAGATCGGACGTGGGAAG......................................	26	0	20	0.05	1	0	1	0
.................................................................................................ACTGAGGTAAGACCTGAGATCGGACG.............................................	26	0	20	0.05	1	0	0	1
...................................................................................................TGAGGTAAGACCTGAGATCGGACGT............................................	25	0	20	0.05	1	1	0	0
.............................................................................................CCAGACTGAGGTAAGACCGGAGAT...................................................	24	1	20	0.05	1	0	1	0

AGACGCTACTTAAAAGACTTGGACGACATGAATTAAGGAGTAGACCGGGCCATAAACCTAATAACAGTGGCAACGGCTAATTCAGTCGGGGGTCCAGACTGAGGTAAGACCTGAGATCGGACGTGGGAAGGTTACCCCCTCCAGCAGGCGTAGCGACGACGGCGGCAG
**************************************************...((...................((((...((((((((....)).))))))....)).)).....))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M044
female body

M058
embryo

V106
head

.................................................................................................................................GGTTACCCCCTCCAGCAGGCGTAGCG.............

1.60

......................................................................................CGGGGGTCCAGACTGAGGTAAGACC.........................................................

1.00

.......................................GTAGACCGGGCCATAAACCTAATAAC.......................................................................................................

1.00

....................................................................GGCAACGGCTAATTCAGTCGGGGGTCC.........................................................................

1.00

.....................................GAGTAGACCGGGCCATAAACCTAAT..........................................................................................................

1.00

..................................................................................................................................GTTACCCCCTCCAGCAGGCGTAGCG.............

0.60

...............................................................................................................................AAGGTTACCCCCTCCAGCAGGCGT.................

0.20

...............................................................................................................................AAGGTTACCCCCTCCAGCAGGCGTAGCG.............

0.20

...............................................................................................................................AAGGTTACCCCCTCCAGCGGGCGTAGC..............

0.20

...............................................................................................................................AAGGTTACCCCCTCCAGCATGCGTAGCG.............

0.20

................................................................................................................................AGGTTACCCCCTCCAGCAGGCGTAGCG.............

0.20

...................................................................................................................................TTACCCCCTCCAGCAGGCGTAGC..............

0.17

.....................................................................................................................................ACCCCCTCCAGCAGGCGTAGCG.............

0.17

....................................................................................................................................TACCCCCTCCAGCAGGCGTAGCGACG..........

0.17

......................................................................................................................................CCCCCTCCAGCAGGCGTAGCG.............

0.15

..............................................................................................................................GAAGGTTACCCCCTCCAGCAGGCG..................

0.13

..............................................................................................................................................AGCAGGCGTAGCGACGACGGCGGCAG

0.10

...............................................................................................................TGAGATCGGACGTGGGAAGGTTACCC...............................

0.10

..................................................................................................................................................GGCGTAGCGACGACGGCGG...

0.10

.......................................................................................................................................CCCCTCCAGCAGGCGTAGCGA............

0.10

............................................................................................................................................TCAGCAGGCGTAGCGACGACG.......

0.05

................................................................................................................................................CAGGCGTAGCGACGACGGCGGCA.

0.05

..................................................................................................................................................GGCGTAGCGACGACGGCGGCAG

0.05

..............................................................................................................CTGAGATCGGACGTGGGAAGGTTAC.................................

0.05

..............................................................................................CAGACTGAGGTAAGACCTGAGAT...................................................

0.05

........................................................................................................TAAGACCTGAGATCGGACGTGGGAAG......................................

0.05

.................................................................................................ACTGAGGTAAGACCTGAGATCGGACG.............................................

0.05

...................................................................................................TGAGGTAAGACCTGAGATCGGACGT............................................

0.05

.............................................................................................CCAGACTGAGGTAAGACCGGAGAT...................................................

0.05

Species	Coordinate	ID	Alignment
droAna3	scaffold_13230:3420655-3420822 +	dan_1479	TCTGCGATGAATTTTCTGAACC-------TGCTGTACTTAATTCCTCATCTGGCCCGGTATTTGGATTATTGTCACCGTTGCCGATTAAGTCAGCCCCCAGGTCTGACTCCATTCTGGACTCTAGCCTGCACCCTTCCAATGGGGGAGGTCGTCCGCATCGCTGCTGCCGCCGTC
droBip1	scf7180000395540:7002-7023 +		CGTGCAATGGATTTT--GAACT-------------------------------------------------------------------------------------------------------------------------------------------------------TG
droRho1	scf7180000779914:741498-741595 -		TATGCACACAATTTGGAGAAATATGCAGGTGCCAGACTTAATTCTCCTTGTGAAATGTCATTTGGAAAATTGGCATTATTATTTATCAAGCTGGCC-----------------------------------------------------------------------------TC
droEug1	scf7180000405800:65-74 +		TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTC

Species

Coordinate

Alignment

droAna3

scaffold_13230:3420655-3420822 +

dan_1479

TCTGCGATGAATTTTCTGAACC-------TGCTGTACTTAATTCCTCATCTGGCCCGGTATTTGGATTATTGTCACCGTTGCCGATTAAGTCAGCCCCCAGGTCTGACTCCATTCTGGACTCTAGCCTGCACCCTTCCAATGGGGGAGGTCGTCCGCATCGCTGCTGCCGCCGTC

droBip1

scf7180000395540:7002-7023 +

CGTGCAATGGATTTT--GAACT-------------------------------------------------------------------------------------------------------------------------------------------------------TG

droRho1

scf7180000779914:741498-741595 -

TATGCACACAATTTGGAGAAATATGCAGGTGCCAGACTTAATTCTCCTTGTGAAATGTCATTTGGAAAATTGGCATTATTATTTATCAAGCTGGCC-----------------------------------------------------------------------------TC

droEug1

scf7180000405800:65-74 +

TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TCTGCGATGAATTTTCTGAACC-------TGCTGTACTTAATTCCTCATCTGGCCCGGTATTTGGATTATTGTCACCGTTGCCGATTAAGTCAGCCCCCAGGTCTGACTCCATTCTGGACTCTAGCCTGCACCCTTCCAATGGGGGAGGTCGTCCGCATCGCTGCTGCCGCCGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................TCCGCATCGCTGCTGCCGCCGT.	22	20	2.60	52	52	0	0	0	0	0
........................................................................................................................................................TCCGCATCGCTGCTGCCGCCG..	21	20	1.05	21	21	0	0	0	0	0
.............................................TCATCTGGCCCGGTATTTGGATTATTGT......................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................TGCCGATTAAGTCAGCCCCCAGGTCT......................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................CCAGGTCTGACTCCATTCTGGAC.......................................................	23	20	0.80	16	11	5	0	0	0	0
.................................................................................................CCAGGTCTGACTCCATTCTGGACT......................................................	24	20	0.50	10	0	10	0	0	0	0
.................................................................................................CCAGGTCTGACTCCATTCTGGACTCT....................................................	26	20	0.30	6	6	0	0	0	0	0
................................................................................................CCCAGGTCTGACTCCATTCTGGACTC.....................................................	26	20	0.25	5	4	1	0	0	0	0
........................................................................................................TGACTCCATTCTGGACTCTAGCCTG..............................................	25	20	0.25	5	5	0	0	0	0	0
......................................................................................................TCTGACTCCATTCTGGACTCTAGCC................................................	25	20	0.20	4	0	4	0	0	0	0
......................................................................................................TCTGACTCCATTCTGGACTCTAGCCTG..............................................	27	20	0.20	4	4	0	0	0	0	0
......................................................................................................................................TTCCAATGGGGGAGGTCGTCCGCAT................	25	5	0.20	1	1	0	0	0	0	0
............................................................................................................................................TGGGGGAGGTCGTCCGCATCGCTGCT.........	26	6	0.17	1	1	0	0	0	0	0
..............................................................TGGATTATTGTCACCGTTGCCGAT.........................................................................................	24	20	0.15	3	3	0	0	0	0	0
.........................................................................................................GACTCCATTCTGGACTCTAGCCTGC.............................................	25	20	0.15	3	2	1	0	0	0	0
..................................................................................................................CTGGACTCTAGCCTGCACCCTTCC.....................................	24	20	0.15	3	3	0	0	0	0	0
........................................................................TCACCGTTGCCGATTAAGTCA..................................................................................	21	20	0.15	3	3	0	0	0	0	0
.............................................................................................................CCATTCTGGACTCTAGCCTGCACC..........................................	24	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................TTCCAATGGGGGAGGTCGT......................	19	8	0.13	1	0	0	0	0	1	0
..................................................................................................CAGGTCTGACTCCATTCTGGA........................................................	21	20	0.10	2	2	0	0	0	0	0
...........................................................ATTTGGATTATTGTCACCGTTGCCGAT.........................................................................................	27	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................GTCGTCCGCATCGCTGCTGCCGC....	23	20	0.10	2	2	0	0	0	0	0
...........................................................................................................CTCCATTCTGGACTCTAGCCTGCACC..........................................	26	20	0.10	2	1	1	0	0	0	0
..................................................................................................................CTGGACTCTAGCCTGCACCCTTC......................................	23	20	0.10	2	0	2	0	0	0	0
.........................................................................................................GACTCCATTCTGGACTCTAGCCTGCACC..........................................	28	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................TAGCCTGCACCCTTCCAATGGG...............................	22	20	0.10	2	1	1	0	0	0	0
................................................................................................CCCAGGTCTGACTCCATTCTGGACTCT....................................................	27	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................GGGAGGTCGTCCGCATCGCTG...........	21	20	0.10	2	2	0	0	0	0	0
...................................................................TATTGTCACCGTTGCCGATTAAGTC...................................................................................	25	20	0.10	2	1	1	0	0	0	0
.............................................................................................................CCATTCTGGACTCTAGCCTGCAC...........................................	23	20	0.10	2	0	2	0	0	0	0
...................................................................TATTGTCACCGTTGCCGATTA.......................................................................................	21	20	0.05	1	0	1	0	0	0	0
..............................................................TGGATTATTGTCACCGTTGCCGA..........................................................................................	23	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CTGGACTCTAGCCTGCACCCTTCCA....................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................TATTGTCACCGTTGCCGATTAAGT....................................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CTGGACTCTAGCCTGCACCCTT.......................................	22	20	0.05	1	0	1	0	0	0	0
...............................................................GGATTATTGTCACCGTTGCCGAT.........................................................................................	23	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................CCGCATCGCTGCTGCCGCCGTC	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................CCATTCTGGACTCTAGCCTGCACCCT........................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................GTCGTCCGCATCGCTGCTGCC......	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................TCTAGCCTGCACCCTTCCAATGGG...............................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................TCCGCATCGCTGCTGCCGCCGTA	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................CTGGACTCTAGCCTGCACCCT........................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................TGTCACCGTTGCCGATTAAGTCA..................................................................................	23	20	0.05	1	1	0	0	0	0	0
...............................................................................................................ATTCTGGACTCTAGCCTGCACC..........................................	22	20	0.05	1	0	1	0	0	0	0
............................................................TTTGGATTATTGTCACCGTTGC.............................................................................................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................CCCAGGTCTGACTCCATTCTGGACT......................................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................TGGATTATTGTCACCGTTGCCGATTAA......................................................................................	27	20	0.05	1	1	0	0	0	0	0
.................................................................................................CCAGGTCTGACTCCATTCTGGACTCTAGC.................................................	29	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TGGACTCTAGCCTGCACCCTTCCAATG.................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................................................................GCCTGCACCCTTCCAATGGGGG.............................	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................CCATTCTGGACTCTAGCCTGCACCCTTC......................................	28	20	0.05	1	1	0	0	0	0	0
...........................................................ATTTGGATTATTGTCACCGTTGC.............................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................................................................................................CCAGGTCTGACTCCATTCTGGACTCTAG..................................................	28	20	0.05	1	0	1	0	0	0	0
.....................................................................TTGTCACCGTTGCCGATTAAGTCAG.................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................ATTATTGTCACCGTTGCCGATTAAG.....................................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CTGGACTCTAGCCTGCACCCTTCCAA...................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................................................TGACTCCATTCTGGACTCTAGCCT...............................................	24	20	0.05	1	0	1	0	0	0	0
................................................................................................................TTCTGGACTCTAGCCTGCACCCT........................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................ATTTGGATTATTGTCACCGTTGCCGA..........................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................TCTAGCCTGCACCCTTCCAATGGGGG.............................	26	20	0.05	1	0	1	0	0	0	0
................................................................................................................TTCTGGACTCTAGCCTGCACCCTTT......................................	25	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................CGTCCGCATCGCTGCTGCCGCCGTC	25	20	0.05	1	1	0	0	0	0	0
........................................................................................................TGACTCCATTCTGGACTCTAGCCTGC.............................................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................GACTCCATTCTGGACTCTAGCCTG..............................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................GGATTATTGTCACCGTTGC.............................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................TTCTGGACTCTAGCCTGCACCCTTC......................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................................................................TCTGGACTCTAGCCTGCACCCT........................................	22	20	0.05	1	1	0	0	0	0	0
............................................................TTTGGATTATTGTCACCGTTGCCGAT.........................................................................................	26	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................GAGGTCGTCCGCATCGCTGCTGCC......	24	20	0.05	1	0	0	0	0	0	1
.........................................................................................................GACTCCATTCTGGACTCTAGC.................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................TGACTCCATTCTGGACTCTAGCCTGCAC...........................................	28	20	0.05	1	0	1	0	0	0	0
...........................................................................................................CTCCATTCTGGACTCTAGCCTGCACCC.........................................	27	20	0.05	1	0	1	0	0	0	0
..........................................................................................................ACTCCATTCTGGACTCTAGCCTGCACCC.........................................	28	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................GACTCTAGCCTGCACCCTTCCAAC..................................	24	20	0.05	1	0	1	0	0	0	0
..........................................................................................................ACTCCATTCTGGACTCTAGCCTGC.............................................	24	20	0.05	1	1	0	0	0	0	0

droBip1

CGTGCAATGGATTTT--GAACT-------------------------------------------------------------------------------------------------------------------------------------------------------TG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TATGCACACAATTTGGAGAAATATGCAGGTGCCAGACTTAATTCTCCTTGTGAAATGTCATTTGGAAAATTGGCATTATTATTTATCAAGCTGGCC-----------------------------------------------------------------------------TC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTC	Size	Hit Count	Total Norm	Total
No Reads

-12.1	-11.6	-11.6	-11.4

dan_1479

scaffold_13230:3420705-3420772 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads