dan_1451

Name	Class	Family	Strand
Gypsy11_I-int	LTR	Gypsy	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACAATAGTCGTTTATAACTATAATGTATCGCAGTACATTAATAATGCAACGCAGTACATTAAAAAAAAAATAGTATTTATTGTTGTGCGCTCTTTGTAGCGCTGTCGATTCACTGCTTCGGGTCTGACTTGGTACGCCACACGGTGCCG ************************************************.................................................((..(((.((.(((..(((((..((((((((.((....((((...))))....)).))))))))....................))))))))))..))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo
.........................................................................................................................................................................................................CGCTGTCGATTCACTGCTCCGGG...........................	23	1	4	0.25	1	1	0
.......................................................................................................................................TACATTAATAATGCAACGCAG...............................................................................................	21	0	20	0.05	1	0	1

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTTATCAGCAAATATTGATATTACATAGCGTCATGTAATTATTACGTTGCGTCATGTAATTTTTTTTTTATCATAAATAACAACACGCGAGAAACATCGCGACAGCTAAGTGACGAAGCCCAGACTGAACCATGCGGTGTGCCACGGC ************************************************.................................................((..(((.((.(((..(((((..((((((((.((....((((...))))....)).))))))))....................))))))))))..))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V105 male body
...................................................................................................................................................................................ATAACAACACGCGGGAAAA.....................................................	19	2	7	0.14	1	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13221:65433-65683 +	dan_1451	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACAATAGTCGTTTATAAC-T----------ATAATGTATCGCAGTACATTAATA----------ATGCAACGCAGTAC-ATTAA---------AAAAAA---AATAGTATTTATTGTTGTGCGCTCTTTGTAGCGCTGTCGATTCACTGC-TTC-GGGTCTGACTTGGTACGCCACACGGTGCCG
droBip1	scf7180000395293:2442-2602 -		---------------------------------------------------------------------------------------------------A---CAGTCGGTAATA--------------ATTATAATGCAACGCAATACATTAACA----------ATGCAACGAAGTGCGACAAGTAAAATAACAAAAAAAATAATATTTATTGTTGTTGTGTGCTTTTTGTAGCGCTATCGGTTCTCGATATCCTTGGTCGCACTTGATGCGCCCGACGGGGCCG
droEle1	scf7180000489000:17811-17943 +		---------------------------------------------------------------------------------------------------TTTATATA----------------CTATAAAAAAATATGCATCGCAGTGCAATAAAA---AAAAATTGTGCACGG---------TAA---------AAA--A---AA------------ATTTGCGCTCTAGGAAGCGCTGTCGGTTCACTGA-TCTTTGGTCTTACTTGGGTGGTAAGACATTGCCG
droRho1	scf7180000776778:4391-4523 -		---------------------------------------------------------------------------------------------------TTTAAAATTTTTA---TTTTTA--ATATTACATTTTATGCATCGCAGTACATAAAAA-----------------------------------------A----AAAATT---TTTTTTCGTGGGCGCTCTTAGAACCGCTGTCGGTTCCT-TT-TCCTTAGCCCGGCTTGATGCGCTGGGCGGTGCCG
droBia1	scf7180000302172:6497-6649 -		---------------------------------------------------------------------------------------------------TTTACATTTGTTATTTATAAT-T--AATAAAAAAATGTGCATCGTAGAGCAATAAAA----AAAATTTTGCCACGCAGTGCAAGAGA---------AAA--A---AA------------TGTTGCGCCCTTTAAGGCGCTGTTAGTTTACTTT-TTC-TGGTCTGACTTGGTACGCCAGACGGTGCTG
droTak1	scf7180000413947:8347-8478 -		---------------------------------------------------------------------------------------------------TATA--------------------------AAAAATATGCATCGCAGTGCAATGAAA----AAAATTATGCAACGCAGTGC-ATGGT---------AAAAAA---AA------------TTATGCGCTCTTGGTAGTGCTGTCGGTTCACTTA-TCCTTGGTCTGGCTTGGTGCGCCCGACGGTGCCG
droEug1	scf7180000405502:3591-3743 -		---------------------------------------------------------------------------------------------------TTTACAATAGTT-TTTATGATA-TAAATGAAAAAACATGCATCGCAGTGCAACTGAA---AAAAAATTTGCAACGCAGTGCAATTAA--------------A---AA------------ATATGCGCTCTTGGAAGCGCTGTCGGTTCACTGT-TCCTTGGTCTTACTTGGTGCGTAAGACGGTGCCG
dm3	chr3RHet:2121007-2121125 -		---------------------------------------------------------------------------------------------------TATA------------------------AATAAAATATTTATCGTAGTGCATTCAAC---AAAAATTTTGCAATGCAGTGCTATCGA---------AAA--A---AA------------AATTGCGCTCTCGGAAGCGCTGTCGGTTCCCTTT-TCCTT---------------ACCATACGGTGCTG
droSim2	node_6102:256-377 +		---------------------------------------------------------------------------------------------------A---CAATTGGTTTTTATAAT-TATTAAAAAAAAATATGCATCGCAGTGCAATCAGAAAAACAAATTTTGCA-CACAGTGCTATTAA---------AAAAAA---AA------------TGATGCGCTCTTTGAAGCGCTGTCGGTTCTCT-------------------------------------
droSec2	scaffold_474:6101-6207 +		---------------------------------------------------------------------------------------------------------------------------------------ATGCATCGTAGTGCATTCAAA----CAAATTTTGAAACGCAGTGCTATTTA---------AAAAAA---AA------------AAGTGCGCTCTCGGAAAC-CTGTTGGTTCCCTTT-TCCTT---------------TACGTACGGTGCCG
droYak3	chr2h:289678-289788 -		---------------------------------------------------------------------------------------------------A-----------------------------------ATGCATCGTAGTGCATTCAAAAAATAAATTTTTGCAAATCAGTGCTATTGA---------AAA--A---AA------------AACTGCGCTCTTGGAAGCGCAGTCGGTTCCCTTT-TCCTT---------------TCTATACGGTGACG
dp5	Unknown_group_338:4419-4523 -		---------------------------------------------------------------------------------------------------------------------------------------ATGCATCGCAG-GCATTTAAA-----------------------------------------A---AAAAATTTTGTTTGGCGGTGGGCGCTCTAGGAAGCGCTGTCGGTTCATTGC-TCC-GGGTCTAGCTTGTTGCGCTAGACGAGGCCG
droPer2	scaffold_1294:4940-5075 +		---------------------------------------------------------------------------------------------------TTTACAATTTTAG---ATCTTA--CAGTTAATTTGTATGCATCGCAG-GCATTAAAA-----------------------------------------A---AAAAATTTTGTTTGGCGGTAGGCGCTCTAGGAAGCGCTGTCGGTTCACTGC-TCC-GGGTCTAGCTTGTTGCGCTAGACGAGGCCG
droWil2	scf2_1100000004517:11481-11598 -		---------------------------------------------------------------------------------------------------GTAT---T----------------------TTATTTACGCATCGCAGTGCATTGGAA---TTTTTTTTTA--------------------------TGA---------------TATTGTTGTGCACACAATGTTGTGCTGTCGGCTCACTAT-TCCTGGGCCTGGCTTGATGCGCCAGACGGTGCGG
droVir3	scaffold_12954:1769374-1769508 +		---------------------------------------------------------------------------------------------------A---CATTAGTTTTTTATAATA--TATAAAAAAAACATGCAACGCGGTGCATTTAAA----AAAATTATG------------------------------------------TTGTTTGGTGGGCGCTCTCAGTAGCGCTGTCGGCTTACTAC-TCC-AGGTCTAGCTTGGTGCGCTAGACGGGGCCG
droMoj3	scaffold_6442:48960-49069 +		---------------------------------------------------------------------------------------------------TT------------------------------ATTTATGCATCGCAGTGCATTACTA-----------------------------------------T---TATTATT---TTAATTGATGCGCACACTATGTTGTGCTGTCGGTTCACTTT-TCCTTGGTCTGGCTTGATGCGCCAGACGATGCCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACAATAGTCGTTTATAAC-T----------ATAATGTATCGCAGTACATTAATA----------ATGCAACGCAGTAC-ATTAA---------AAAAAA---AATAGTATTTATTGTTGTGCGCTCTTTGTAGCGCTGTCGATTCACTGC-TTC-GGGTCTGACTTGGTACGCCACACGGTGCCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................TACATTAATA----------ATGCAACGCAG..............................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droBip1

---------------------------------------------------------------------------------------------------A---CAGTCGGTAATA--------------ATTATAATGCAACGCAATACATTAACA----------ATGCAACGAAGTGCGACAAGTAAAATAACAAAAAAAATAATATTTATTGTTGTTGTGTGCTTTTTGTAGCGCTATCGGTTCTCGATATCCTTGGTCGCACTTGATGCGCCCGACGGGGCCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------------------------------------------------------------------------------------TTTATATA----------------CTATAAAAAAATATGCATCGCAGTGCAATAAAA---AAAAATTGTGCACGG---------TAA---------AAA--A---AA------------ATTTGCGCTCTAGGAAGCGCTGTCGGTTCACTGA-TCTTTGGTCTTACTTGGGTGGTAAGACATTGCCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------------------------------------------------------------------------------------------TTTAAAATTTTTA---TTTTTA--ATATTACATTTTATGCATCGCAGTACATAAAAA-----------------------------------------A----AAAATT---TTTTTTCGTGGGCGCTCTTAGAACCGCTGTCGGTTCCT-TT-TCCTTAGCCCGGCTTGATGCGCTGGGCGGTGCCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

---------------------------------------------------------------------------------------------------TTTACATTTGTTATTTATAAT-T--AATAAAAAAATGTGCATCGTAGAGCAATAAAA----AAAATTTTGCCACGCAGTGCAAGAGA---------AAA--A---AA------------TGTTGCGCCCTTTAAGGCGCTGTTAGTTTACTTT-TTC-TGGTCTGACTTGGTACGCCAGACGGTGCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---------------------------------------------------------------------------------------------------TATA--------------------------AAAAATATGCATCGCAGTGCAATGAAA----AAAATTATGCAACGCAGTGC-ATGGT---------AAAAAA---AA------------TTATGCGCTCTTGGTAGTGCTGTCGGTTCACTTA-TCCTTGGTCTGGCTTGGTGCGCCCGACGGTGCCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

---------------------------------------------------------------------------------------------------TTTACAATAGTT-TTTATGATA-TAAATGAAAAAACATGCATCGCAGTGCAACTGAA---AAAAAATTTGCAACGCAGTGCAATTAA--------------A---AA------------ATATGCGCTCTTGGAAGCGCTGTCGGTTCACTGT-TCCTTGGTCTTACTTGGTGCGTAAGACGGTGCCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

---------------------------------------------------------------------------------------------------TATA------------------------AATAAAATATTTATCGTAGTGCATTCAAC---AAAAATTTTGCAATGCAGTGCTATCGA---------AAA--A---AA------------AATTGCGCTCTCGGAAGCGCTGTCGGTTCCCTTT-TCCTT---------------ACCATACGGTGCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................TTTTGCAATGCAGTGCTATCGA---------AAA--A---...................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TA------------------------AATAAAATATTTATCGTAGTGCAT........................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GCTGTCGGTTCCCTTT-TCCTT---------------ACCA..........	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GCGCTGTCGGTTCCCTTT-TCC...............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................TTGCGCTCTCGGAAGCGCTGTCGGG..........................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTCGGAAGCGCTGTCGGT..........................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AA--A---AA------------AATTGCGCTCTCGGAAGC...................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGCGCTCTCGGAAGCGCTGTCG............................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTCTCGGAAGCGCTGTCGGTT.........................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................A---AA------------AATTGCGCTCTCGGAAGCG..................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TGCAGTGCTATCGA---------AAA--A---...................................................................................	18	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSim2

---------------------------------------------------------------------------------------------------A---CAATTGGTTTTTATAAT-TATTAAAAAAAAATATGCATCGCAGTGCAATCAGAAAAACAAATTTTGCA-CACAGTGCTATTAA---------AAAAAA---AA------------TGATGCGCTCTTTGAAGCGCTGTCGGTTCTCT-------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCTTTGA......................................................	26	1	206.00	206	0	0	0	2	0	0	110	64	1	9	9	0	10	1	0	0	0
............................................................................................................................................................................CACAGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	25	1	160.00	160	0	0	0	0	0	0	96	61	0	1	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTCGGT..........................................	27	1	148.00	148	0	1	1	1	0	0	5	4	0	1	134	0	1	0	0	0	0
.........................................................................................................................................................................CA-CACAGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	27	1	62.00	62	0	0	0	0	0	0	36	25	0	0	1	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAAACAAA...........................................................................................................................	30	1	53.00	53	0	0	0	0	0	0	26	25	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGTT.........................................	25	6	44.00	264	0	0	0	1	0	0	130	77	1	12	15	0	28	0	0	0	0
.......................................................................................................................................................TCAGAAAAACAAATTTTGCA-CACAGTGC...........................................................................................................	28	1	42.00	42	0	0	0	0	0	0	9	30	0	3	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCTTTGAA.....................................................	27	1	38.00	38	0	0	0	0	0	0	21	12	0	1	1	0	3	0	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCGCTCTTTGA......................................................	27	1	31.00	31	0	0	0	0	0	0	12	11	3	3	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGT..........................................	24	6	28.33	170	0	0	0	1	0	0	79	48	3	5	21	0	12	1	0	0	0
.......................................................................................................................................................TCAGAAAAACAAATTTTGCA-CACAG..............................................................................................................	25	1	24.00	24	0	0	0	1	4	0	3	8	0	7	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTC.............................................	24	1	24.00	24	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCT............................................................	20	1	21.00	21	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0
........................................................................................................................................TGCATCGCAGTGCAATCAGAAAAACAAA...........................................................................................................................	28	1	21.00	21	0	0	0	4	0	0	5	6	0	0	2	0	4	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAAT..........................................................................................................................	19	1	21.00	21	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0
....................................................................................................................................................................................TATTAA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	26	1	21.00	21	0	0	0	0	0	0	4	4	1	1	0	0	11	0	0	0	0
........................................................................................................................................................CAGAAAAACAAATTTTGCA-CACAGTGC...........................................................................................................	27	1	20.00	20	0	0	0	0	0	0	5	13	0	1	0	0	1	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAA...........................................................................................................................	18	1	20.00	20	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTTGCA-CACAG..............................................................................................................	26	1	20.00	20	0	1	0	3	6	2	2	4	0	0	1	0	0	1	0	0	0
.......................................................................................................................................................................TGCA-CACAGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	29	1	20.00	20	0	0	0	0	0	0	11	8	0	1	0	0	0	0	0	0	0
............................................................................................................................................TCGCAGTGCAATCAGAAAAACAAATTT........................................................................................................................	27	1	19.00	19	0	0	0	3	0	0	2	1	0	0	1	0	10	2	0	0	0
............................................................................................................................................................................................................AA------------TGATGCGCTCTTTGAAGCGCTGT..............................................	25	1	18.00	18	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0
....................................................................................................................TAAT-TATTAAAAAAAAATATGCATCGCAG.............................................................................................................................................	29	2	18.00	36	0	0	0	0	0	0	17	18	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTCGG...........................................	26	1	18.00	18	0	0	0	1	0	0	3	1	0	1	12	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAAACAA............................................................................................................................	29	1	17.00	17	0	0	0	0	0	0	4	7	0	0	1	0	5	0	0	0	0
..........................................................................................................................................................................A-CACAGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	26	1	16.00	16	0	0	0	0	0	0	8	8	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	23	1	15.00	15	0	0	0	2	0	0	3	2	0	0	4	0	4	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGTTC........................................	26	6	13.50	81	0	0	0	7	0	0	42	14	0	2	9	0	6	1	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCTTTGAAG....................................................	28	1	13.00	13	0	0	0	0	0	0	6	7	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAATTTTGCA-CAC................................................................................................................	28	1	13.00	13	0	0	0	0	2	0	0	0	0	0	0	0	11	0	0	0	0
.......................................................................................................................T-TATTAAAAAAAAATATGCATCGCAG.............................................................................................................................................	26	2	13.00	26	0	0	0	0	0	0	11	8	0	0	2	0	5	0	0	0	0
................................................................................................................................AAAAAATATGCATCGCAGTGCAATCAGA...................................................................................................................................	28	5	12.00	60	0	0	0	0	0	0	15	20	2	23	0	0	0	0	0	0	0
.........................................................................................................................TATTAAAAAAAAATATGCATCGCAG.............................................................................................................................................	25	2	11.50	23	0	0	0	0	0	0	9	8	0	3	1	0	2	0	0	0	0
....................................................................................................................................................................................TATTAA---------AAAAAA---AA------------TGATGCGCTC...........................................................	24	1	11.00	11	0	0	0	0	0	0	0	1	0	0	8	0	1	1	0	0	0
...........................................................................................................TGGTTTTTATAAT-TATTAAAAAAAAATA.......................................................................................................................................................	28	1	11.00	11	0	0	0	0	0	0	6	3	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTCGGTA.........................................	28	1	10.00	10	0	0	0	0	0	0	2	0	0	1	7	0	0	0	0	0	0
..............................................................................................................................................................................CAGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	23	1	10.00	10	0	0	0	0	0	0	3	6	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGTA.........................................	25	6	9.17	55	0	0	0	0	0	0	27	19	0	3	3	0	3	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGC.............................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
....................................................................................................................................................................................TATTAA---------AAAAAA---AA------------TGATGCGCTCT..........................................................	25	1	9.00	9	0	0	0	1	0	0	1	0	0	0	5	0	2	0	0	0	0
..................................................................................................................................AAAATATGCATCGCAGTGCAATCAGA...................................................................................................................................	26	5	8.80	44	0	0	0	0	0	0	7	12	1	16	8	0	0	0	0	0	0
.................................................................................................................................AAAAATATGCATCGCAGTGCAATCAGA...................................................................................................................................	27	5	8.20	41	0	0	0	0	0	0	8	19	0	11	3	0	0	0	0	0	0
...................................................................................................................................AAATATGCATCGCAGTGCAATCAGA...................................................................................................................................	25	5	8.20	41	0	0	0	0	0	0	3	19	0	3	16	0	0	0	0	0	0
....................................................................................................................................................................................TATTAA---------AAAAAA---AA------------TGATGCGCTT...........................................................	24	1	8.00	8	0	0	0	1	0	0	1	1	0	0	3	0	2	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAAACA.............................................................................................................................	28	1	8.00	8	0	0	0	0	0	0	0	0	0	0	3	0	5	0	0	0	0
.............................................................................................................................................CGCAGTGCAATCAGAAAAACAAATTT........................................................................................................................	26	1	8.00	8	0	0	0	1	0	0	3	1	0	0	0	0	2	1	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTCG............................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
.......................................................................................................................................................TCAGAAAAACAAATTTTGCA-CACAGT.............................................................................................................	26	1	8.00	8	0	0	0	1	0	0	3	3	0	0	1	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAA................................................................................................................................	25	5	7.80	39	0	0	0	0	0	0	3	16	2	15	3	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTGAAGCGCTGTCGG...........................................	16	6	7.33	44	0	0	0	0	0	0	9	7	2	0	26	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAAAC..............................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	6	0	1	0	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCGCTCTTTGAA.....................................................	28	1	7.00	7	0	0	0	0	0	0	6	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................TCGCAGTGCAATCAGAAAAACAAATT.........................................................................................................................	26	1	7.00	7	0	0	0	2	0	0	0	0	0	0	0	0	2	3	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTTGCA-CAC................................................................................................................	24	1	7.00	7	0	0	0	0	4	0	0	2	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTCTTTGAAGCGCTGTCGGTTCTC......................................	24	3	6.67	20	0	0	0	2	0	0	3	2	0	0	5	0	6	2	0	0	0
.........................................................................................................................................................................................A---------AAAAAA---AA------------TGATGCGCTCTTTGAAG....................................................	26	1	6.00	6	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAATT.........................................................................................................................	20	1	6.00	6	0	0	0	0	2	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAAA...............................................................................................................................	26	5	5.60	28	0	0	0	0	0	0	8	10	0	3	5	0	2	0	0	0	0
........................................................................................................................................TGCATCGCAGTGCAATCAGAAAAACA.............................................................................................................................	26	1	5.00	5	0	0	0	2	0	0	1	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................AGTGCTATTAA---------AAAAAA---AA------------TGATGCGC.............................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................TTGGTTTTTATAAT-TATTAAAAAAAAATA.......................................................................................................................................................	29	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTAA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	25	1	5.00	5	0	0	0	0	0	0	1	0	0	0	0	0	3	1	0	0	0
........................................................................................................................................TGCATCGCAGTGCAATCAGAAAAACAA............................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0
...............................................................................................................................AAAAAAATATGCATCGCAGTGCAATCAGA...................................................................................................................................	29	5	4.80	24	0	0	0	0	0	0	7	12	2	3	0	0	0	0	0	0	0
...........................................................................................................................TTAAAAAAAAATATGCATCGCAGT............................................................................................................................................	24	2	4.00	8	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAGTGCTATTAA---------AAAAAA---AA------------TGATGCGC.............................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0
.............................................................................................................................................................................................................A------------TGATGCGCTCTTTGAAGCGCTGTC.............................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTCGGTT.........................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
............................................................................................................................................TCGCAGTGCAATCAGAAAAACAAAT..........................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	1	0	0	0	1	0	2	0	0	0	0
............................................................................................................................................................................................................................ATGCGCTCTTTGAAGCGCTGTCGGT..........................................	25	1	4.00	4	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTTGCA-CACA...............................................................................................................	25	1	4.00	4	0	0	0	0	0	0	2	0	1	0	1	0	0	0	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTTGCA-CA.................................................................................................................	23	1	4.00	4	0	0	0	1	2	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................ATCGCAGTGCAATCAGAAAAACAAATT.........................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0
.................................................................................................................................................................................TGCTATTAA---------AAAAAA---AA------------TGATGCGCTC...........................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0
.................................................................................................................................................................................................................................CTCTTTGAAGCGCTGTCGGTTCTCT-------------------------------------	25	3	4.00	12	0	0	0	0	0	0	2	4	0	0	2	0	3	1	0	0	0
...............................................................................................................................................................................AGTGCTATTAA---------AAAAAA---AA------------TGATGCGCT............................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCT..........................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
............................................................................................................................................................................CACAGTGCTATTAA---------AAAAAA---AA------------TGATG................................................................	27	1	4.00	4	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0
......................................................................................................................AT-TATTAAAAAAAAATATGCATCGCAG.............................................................................................................................................	27	2	3.50	7	0	0	0	0	0	0	4	2	0	1	0	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAA..................................................................................................................................	23	5	3.20	16	0	0	0	0	11	0	1	3	0	0	1	0	0	0	0	0	0
........................................................................................................................................TGCATCGCAGTGCAATCAGAAAAAC..............................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0
............................................................................................................................................TCGCAGTGCAATCAGAAAAACAAA...........................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAATTTTGCA-...................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
...................................................................................................................................................................................................AAAAAA---AA------------TGATGCGCTCTTTGAAG....................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
.................................................................................................................................................................................TGCTATTAA---------AAAAAA---AA------------TGATGCGCTT...........................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................TAAAAAAAAATATGCATCGCAGT............................................................................................................................................	23	2	3.00	6	0	0	0	1	0	0	3	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AAAAA---AA------------TGATGCGCTCTTTGAAG....................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTTGCA-CACAGT.............................................................................................................	27	1	3.00	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAG....................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................................................................................................AA------------TGATGCGCTCTTTGAAGCGCTGTC.............................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGT..............................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAATTTTGCA-CA.................................................................................................................	27	1	3.00	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTGAAGCGCTGTCGGTTCTC......................................	21	3	3.00	9	0	0	0	0	0	0	0	1	0	0	2	0	5	1	0	0	0
...........................................................................................................................................ATCGCAGTGCAATCAGAAAAACAAATTT........................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................................TGCTATTAA---------AAAAAA---AA------------TGATGCGC.............................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................CAATCAGAAAAACAAATTTTGCA-CAC................................................................................................................	26	1	3.00	3	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................AAAAAAAATATGCATCGCAGTGCAAT.......................................................................................................................................	26	4	2.75	11	0	0	0	0	0	0	0	0	0	1	10	0	0	0	0	0	0
..........................................................................................................TTGGTTTTTATAAT-TATTAAAAAAAAA.........................................................................................................................................................	27	2	2.50	5	0	0	0	0	0	0	3	1	0	0	1	0	0	0	0	0	0
....................................................................................................................TAAT-TATTAAAAAAAAATATGCATCGC...............................................................................................................................................	27	2	2.50	5	0	0	0	0	0	0	0	1	0	0	0	0	4	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGG...........................................	23	6	2.50	15	0	0	0	1	0	0	7	3	0	0	4	0	0	0	0	0	0
............................................................................................................................TAAAAAAAAATATGCATCGCAG.............................................................................................................................................	22	2	2.50	5	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TCTTTGAAGCGCTGTCGGTTCTC......................................	23	3	2.33	7	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCGCT............................................................	21	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.................................................................................................................................................GTGCAATCAGAAAAACAAATTTTGCA-...................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................A---AA------------TGATGCGCTCTTTGA......................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................TATGCATCGCAGTGCAATCAGAAAAACAAAA..........................................................................................................................	31	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TAAAAAAAAATATGCATCGCAGTG...........................................................................................................................................	24	2	2.00	4	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................A---AA------------TGATGCGCTCTTTGAAGCGCTGT..............................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTGAAGCGCTGTCGGT..........................................	17	6	2.00	12	0	0	0	0	0	0	0	1	0	0	11	0	0	0	0	0	0
........................................................................................................................................................CAGAAAAACAAATTTTGCA-CACAGT.............................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................GATGCGCTCTTTGAAG....................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................AAAAACAAATTTTGCA-CACAG..............................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCAGAAAAACAAATTTTGC.....................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CATCGCAGTGCAATCAGAAAAACAAATT.........................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............................................................................................................................................................AACAAATTTTGCA-CACAGTGCTAT........................................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................CAGTGCTATTAA---------AAAAAA---AA------------TGATGC...............................................................	26	1	2.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTAAAAAAAAATATGCATCGCAGTG...........................................................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCAGAAAAACAAATTTTGCA-CAC................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTGAAGCGCTGTCGGTT.........................................	18	6	2.00	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGATGCGCTCTTTGAAGCGCTGTCGGA..........................................	27	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................A------------TGATGCGCTCTTTGAAGCGCTGT..............................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTCTTTGAAGCGCTGTCGGTTCT.......................................	23	3	2.00	6	0	0	0	0	0	0	3	1	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................AA---AA------------TGATGCGCTCTTTGA......................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................TGGTTTTTATAAT-TATTAAAAAAAAA.........................................................................................................................................................	26	2	2.00	4	0	0	0	1	0	0	2	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGTTCT.......................................	27	3	2.00	6	0	0	0	0	0	0	4	1	0	0	1	0	0	0	0	0	0
....................................................................................................................................................CAATCAGAAAAACAAATTTTGCA-CACAGT.............................................................................................................	29	1	2.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................TATTAA---------AAAAAA---AA------------TGATGCGCT............................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCTTTGAAGC...................................................	29	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................TGCATCGCAGTGCAATCAGAAAAACAAAT..........................................................................................................................	29	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTT.......................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AA---------AAAAAA---AA------------TGATGCGCTCTTTGA......................................................	25	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGCTATTAA---------AAAAAA---AA------------TGA..................................................................	20	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................AAT-TATTAAAAAAAAATATGCATCGCAG.............................................................................................................................................	28	2	2.00	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTT...........................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................CTATTAA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	27	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................CATCGCAGTGCAATCAGAAAAACAAA...........................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTCTTTGAAGCGCTGTCGGTT.........................................	21	6	2.00	12	0	0	0	0	0	0	0	0	0	1	3	0	5	3	0	0	0
.....................................................................................................................................................................TTTGCA-CACAGTGCTATTAA---------AAAAAA---AA------------.....................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	22	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTGAAGCGCTGTCG............................................	15	6	1.83	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGAA.........................................	25	6	1.83	11	0	0	0	0	0	0	6	2	0	0	2	0	1	0	0	0	0
...............................................................................................................................................................................................................................CGCTCTTTGAAGCGCTGTCGGTTCTC......................................	26	3	1.67	5	0	0	0	1	0	0	0	0	0	0	1	0	3	0	0	0	0
.....................................................................................................................................................................................................................................TTGAAGCGCTGTCGGTTCTC......................................	20	3	1.67	5	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0
.............................................................................................................................................................................................................................TGCGCTCTTTGAAGCGCTGTCGGTTCTC......................................	28	3	1.67	5	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0
....................................................................................................................................AATATGCATCGCAGTGCAATCAGA...................................................................................................................................	24	5	1.60	8	0	0	0	0	0	0	1	5	0	1	1	0	0	0	0	0	0
...........................................................................................................................TTAAAAAAAAATATGCATCGCAGTGC..........................................................................................................................................	26	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
..................................................................................................................TATAAT-TATTAAAAAAAAATATGCATCGCAG.............................................................................................................................................	31	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
............................................................................................................................TAAAAAAAAATATGCATCGCAGTGC..........................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0
............................................................................................................................TAAAAAAAAATATGCATCGCAGTGCAA........................................................................................................................................	27	2	1.50	3	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATATGCATCGCAGTGCAATCAGAAAA................................................................................................................................	26	5	1.40	7	0	0	0	0	0	0	1	2	0	0	4	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTCTTTGAAGCGCTGTCGGTTCTC......................................	25	3	1.33	4	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0
......................................................................................................................................................................................................................................TGAAGCGCTGTCGGTTCTC......................................	19	3	1.33	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTGAAGCGCTGTCGGTTCTCT-------------------------------------	21	3	1.33	4	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0
...............................................................................................................................AAAAAAATATGCATCGCAGTGCAAT.......................................................................................................................................	25	6	1.17	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTGAAGCGCTGTCGGTT.........................................	17	6	1.17	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCGCC............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................TTGCA-CACAGTGCTATTAA---------AAAAAA---AA------------.....................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTAA---------AAAAAA---AA------------TGATGCGCT............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AA------------TGATGCGCTCTTTGA......................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................ATGCATCGCAGTGCAATCAGAAAAACT.............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................CAATCAGAAAAACAAATTTTGCA-CACAG..............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAATCAGAAAAACAAATTTTGCA-C..................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................TGCTATTAA---------AAAAAA---AA------------TGATGCGCT............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................AGTGCAATCAGAAAAACAAATTTTGC.....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAATTT........................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGCTATTAA---------AAAAAA---AA------------TGATGCGCTCTT.........................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AA------------TGATGCGCTCTTTG.......................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................CAGTGCTATTAA---------AAAAAA---AA------------TGATG................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACA.............................................................................................................................	16	2	1.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................TCAGAAAAACAAATTTTGCA-CACAGTG............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................CAATCAGAAAAACAAATTTTGCA-CACA...............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................CTATTAA---------AAAAAA---AA------------TGATGCGCTT...........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................CAGTGCAATCAGAAAAACAAATTT........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TAAT-TATTAAAAAAAAATATGCATCGCA..............................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATCGCAGTGCAATCAGAAAAACAAAT..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AATCAGAAAAACAAATTTTGCA-CACA...............................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TCTTTGAAGCGCTGTCGG...........................................	18	6	1.00	6	0	0	0	0	0	0	2	0	0	0	4	0	0	0	0	0	0
............................................................................................................................................................AAAACAAATTTTGCA-CACAGT.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................TAA---------AAAAAA---AA------------TGATGCGCTCTTTGC......................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCGC.............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................TTGCA-CACAGTGCTATTAA---------AAAAAA---AA------------TGA..................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CAGAAAAACAAATTTTGCA-CACAGTG............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................CAGAAAAACAAATTTTGCA-CACAG..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAAC..............................................................................................................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................TCTTTGAAGCGCTGTCGGTTCTCT-------------------------------------	24	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0
...........................................................................................................................................ATCGCAGTGCAATCAGAAAAACAA............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTGAAGCGCTGTCGGTTCT.......................................	19	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................................................................CACAGTGCTATTAA---------AAAAAA---AA------------TGAA.................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................CAGTGCTATTAA---------AAAAAA---AA------------TGAT.................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................GATGCGCTCTTTGAAGCGCTGTCGGT..........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................ATCAGAAAAACAAATTTTGCA-CACAGTG............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................TTTGCA-CACAGTGCTATTAA---------AAAAAA---AA------------A....................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................CTATTAA---------AAAAAA---AA------------TGA..................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................TATAAT-TATTAAAAAAAAATATGCAT..................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................................................TATTAA---------AAAAAA---AA------------TGATGCGCTCTTTGAA.....................................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGCAATCAGAAAAACAAATTTTGCA-C..................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................CATCGCAGTGCAATCAGAAAAACAAAT..........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................AT-TATTAAAAAAAAATATGCATCGCA..............................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTAA---------AAAAAA---AA------------TGATGCG..............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................TTAAAAAAAAATATGCATCGCA..............................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GTGCAATCAGAAAAACAA............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................AAAACAAATTTTGCA-CACAGTGCTAT........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................AA------------TGATGCGCTCTTTGAAGCGCC................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................CGCAGTGCAATCAGAAAAACAAATTTA.......................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................AAA---AA------------TGATGCGCTCTTTGAA.....................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

---------------------------------------------------------------------------------------------------------------------------------------ATGCATCGTAGTGCATTCAAA----CAAATTTTGAAACGCAGTGCTATTTA---------AAAAAA---AA------------AAGTGCGCTCTCGGAAAC-CTGTTGGTTCCCTTT-TCCTT---------------TACGTACGGTGCCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

---------------------------------------------------------------------------------------------------A-----------------------------------ATGCATCGTAGTGCATTCAAAAAATAAATTTTTGCAAATCAGTGCTATTGA---------AAA--A---AA------------AACTGCGCTCTTGGAAGCGCAGTCGGTTCCCTTT-TCCTT---------------TCTATACGGTGACG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................TCGGTTCCCTTT-TCCTT---------------TCTATACGG.....	26	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12
....................................................................................................................................................................TTTTGCAAATCAGTGCTATTG......................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

dp5

---------------------------------------------------------------------------------------------------------------------------------------ATGCATCGCAG-GCATTTAAA-----------------------------------------A---AAAAATTTTGTTTGGCGGTGGGCGCTCTAGGAAGCGCTGTCGGTTCATTGC-TCC-GGGTCTAGCTTGTTGCGCTAGACGAGGCCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................TAAA-----------------------------------------A---AAAAATTTTGTTTGGCGGTG..................................................................	25	1	4.00	4	0	1	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAGGCC.	24	10	3.80	38	1	37	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTAGACG......	27	10	3.30	33	0	33	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAGGCCG	25	10	3.20	32	0	31	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAGG...	22	10	1.60	16	0	16	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAGGC..	23	10	1.60	16	0	15	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCTC...........................................................	21	8	1.50	12	0	12	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTA..........	23	10	1.40	14	0	14	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TAGGAAGCGCTGTCGGTTCATTGC-..................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................TAAA-----------------------------------------A---AAAAATTTTGTTTGGC......................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................TAAA-----------------------------------------A---AAAAATTTTGTTTGGCGG....................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTAGA........	25	10	1.00	10	0	10	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CGCTGTCGGTTCATTGC-TCC-GG............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCT...........	22	10	0.80	8	0	7	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCT............................................................	20	8	0.75	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCGC.............................................................	20	8	0.75	6	0	5	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................TTGTTTGGCGGTGGGCGCTC...........................................................	20	8	0.63	5	0	5	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCG..............................................................	18	8	0.50	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCGCTC...........................................................	22	8	0.50	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTAG.........	24	10	0.40	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAG....	21	10	0.40	4	0	3	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCGCT............................................................	21	8	0.38	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................AA-----------------------------------------A---AAAAATTTTGTTTGGCGGTGG.................................................................	24	6	0.33	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAGGCCT	25	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTAGAC.......	26	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTAGACGA.....	28	10	0.30	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGTTGCGCTAGACGAGGCCG	20	10	0.30	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGTTTGGCGGTGGGCGCT............................................................	19	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................A---AAAAATTTTGTTTGGCGGTGG.................................................................	22	8	0.25	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................................................................................................................................TGTTTGGCGGTGGGCGCTC...........................................................	19	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCTT...........................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGC.............................................................	19	8	0.25	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TCTAGCTTGTTGCGCTAGACGAGGC..	25	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCTTGTTGCGCTAGACGAGGCC.	23	10	0.20	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CC-GGGTCTAGCTTGTTGCGCTAGAC.......	25	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCTTGTTGCGCTAGACGAGG...	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CTAGCTTGTTGCGCTAGACGAGGCCG	26	10	0.20	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAGCTTGTTGCGCTAGACGAGGCCA	25	10	0.20	2	0	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................CC-GGGTCTAGCTTGTTGCGCTA..........	22	10	0.20	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................AA-----------------------------------------A---AAAAATTTTGTTTGGCGG....................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................A-----------------------------------------A---AAAAATTTTGTTTGGCGGTG..................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCGCTT...........................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGTTTGGCGGTGGGCGCA............................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCG..............................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGTTTGGCGGTGGGCGCTCTAGGA......................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGC...............................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGGCGGTGGGCGCTCTAGGAAG....................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAAATTTTGTTTGGCGGTGGGCGCTC...........................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCAA...........................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGG................................................................	17	8	0.13	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................TGTTTGGCGGTGGGCGCTCTAG........................................................	22	8	0.13	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................TGTTTGGCGGTGGGCGCTCTAGG.......................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCTCA..........................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................A---AAAAATTTTGTTTGGCGGTGGGCGCTC...........................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGTTTGGCGGTGGGCGCTT...........................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCGCTCTAA........................................................	25	8	0.13	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................TTGTTTGGCGGTGGGCGCTCT..........................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AAAATTTTGTTTGGCGGTGGG................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................A---AAAAATTTTGTTTGGCG.....................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................A-----------------------------------------A---AAAAATTTTGTTTGGCGGTGGGC...............................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTGGCGGTGGGCGCTCTAGGAAGC...................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGTTTGGCGGTGGGCGC.............................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCTCTAA........................................................	24	8	0.13	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................A-----------------------------------------A---AAAAATTTTGTTTGGCGGTGGGCGCT............................................................	28	8	0.13	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCTCTA.........................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTTGTTTGGCGGTGGGCGCTCT..........................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTCTAGGAAGCGCTGTCGGTTCA.......................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTTTGTTTGGCGGTGGGCGCTCTAG........................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0

droPer2

---------------------------------------------------------------------------------------------------TTTACAATTTTAG---ATCTTA--CAGTTAATTTGTATGCATCGCAG-GCATTAAAA-----------------------------------------A---AAAAATTTTGTTTGGCGGTAGGCGCTCTAGGAAGCGCTGTCGGTTCACTGC-TCC-GGGTCTAGCTTGTTGCGCTAGACGAGGCCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGCTTGT.................	24	20	1.55	31	0	28	0	0	0	3
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAGCT....................	25	20	1.40	28	0	28	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAGC.....................	24	20	0.95	19	0	19	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAG......................	23	20	0.90	18	0	18	0	0	0	0
......................................................................................................................................................................................................................................................CACTGC-TCC-GGGTCTAGCTTGTTGCGC............	27	20	0.85	17	0	17	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAGCTTG..................	27	20	0.65	13	0	13	0	0	0	0
....................................................................................................................................................................................................................................TAGGAAGCGCTGTCGGTTCACTGC-TC................................	26	20	0.55	11	0	11	0	0	0	0
..............................................................................................................................................................................................................................................TGTCGGTTCACTGC-TCC-GGGTCTAGC.....................	26	20	0.45	9	0	9	0	0	0	0
..............................................................................................................................................................................................................................................TGTCGGTTCACTGC-TCC-GGGTCTAGCT....................	27	20	0.35	7	0	7	0	0	0	0
......................................................................................................................................................................................................................................................CACTGC-TCC-GGGTCTAGCTTGT.................	22	20	0.35	7	0	7	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAGCTT...................	26	20	0.35	7	2	5	0	0	0	0
.....................................................................................................................................................................................................................................................TCACTGC-TCC-GGGTCTAGCTTGTTGCGC............	28	20	0.35	7	0	7	0	0	0	0
.........................................................................................................................................................................................................................................................TGC-TCC-GGGTCTAGCTTGTTGCGC............	24	20	0.30	6	0	5	0	0	0	1
.........................................................................................................................................................................................................................................................TGC-TCC-GGGTCTAGCTTGTTGCGCT...........	25	20	0.25	5	0	5	0	0	0	0
.......................................................................................................................................................................................................................................................ACTGC-TCC-GGGTCTAGCTTGTTGCGC............	26	20	0.25	5	0	5	0	0	0	0
.................................................................................................................................................................................................................................................CGGTTCACTGC-TCC-GGGTCTAGCT....................	24	20	0.20	4	0	4	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCT........................	21	20	0.15	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGCTTG..................	23	20	0.15	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGCTT...................	22	20	0.15	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................GAAGCGCTGTCGGTTCACTGC-TCC-GGG...........................	27	20	0.15	3	0	3	0	0	0	0
..............................................................................................................................................................................................................................................TGTCGGTTCACTGC-TCC-GGGTCTAG......................	25	20	0.10	2	0	2	0	0	0	0
......................................................................................................ACAATTTTAG---ATCTTA--CAGT................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................GTCGGTTCACTGC-TCC-GGGTCTAGC.....................	25	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................TAGGAAGCGCTGTCGGTTCACTGC-TCC-..............................	27	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................TCTAGGAAGCGCTGTCGGTTCACTGC-..................................	26	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................TGC-TCC-GGGTCTAGCTTGTTGCGCTA..........	26	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................AGCGCTGTCGGTTCACTGC-TCC-GGGT..........................	26	20	0.10	2	0	1	0	1	0	0
......................................................................................................................................................................................................................................................CACTGC-TCC-GGGTCTAGCTTGTTGC..............	25	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................CGCTGTCGGTTCACTGC-TCC-GGGTC.........................	25	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCTAGACG......	27	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................CGGTTCACTGC-TCC-GGGTCTAGC.....................	23	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGC.....................	20	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................C-TCC-GGGTCTAGCTTGTTGCGCT...........	23	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................GC-TCC-GGGTCTAGCTTGTTGCGC............	23	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGCTTGCGC...............	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TCACTGC-TCC-GGGTCTAGCTT...................	21	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................TGTCGGTTCACTGC-TCC-GGGTG.........................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................ACTGC-TCC-GGGTCTAGCT....................	18	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TGTTGCGCTAGACGAGGCCG	20	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................TGTTGCGCTAGACGAGGCC.	19	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TGC-TCC-GGGTCTAGCTTGTTG...............	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GGTTCACTGC-TCC-GGGTCTAGCTTGT.................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TGC-TCC-GGGTCTAGCTTG..................	18	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TCTAGCTTGTTGCGCTAGACGAGG...	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................TTACAATTTTAG---ATCTTA--CAG.................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................CGCTGTCGGTTCACTGC-TCC-GG............................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCTTGTTGCGCTAGACGAGGC..	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CACTGC-TCC-GGGTCTAGC.....................	18	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................C-GGGTCTAGCTTGTTGCGCTAGAC.......	24	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................TGTCGGTTCACTGC-TCC-GGG...........................	20	20	0.05	1	0	1	0	0	0	0
...................................................................................................TTTACAATTTTAG---ATCTTA--CA..................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAGCTTGT.................	28	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................TCACTGC-TCC-GGGTCTAG......................	18	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................CTCTAGGAAGCGCTGTCGGTTCACTGC-..................................	27	20	0.05	1	0	1	0	0	0	0
.....................................................................................................TACAATTTTAG---ATCTTA--CAGT................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGCT....................	21	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................CGGTTCACTGC-TCC-GGGTCTAGCTTG..................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CACTGC-TCC-GGGTCTAGCTT...................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................TTCACTGC-TCC-GGGTCTAGCTTGTTGCGC............	29	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................GTTCACTGC-TCC-GGGTCTAGCTTGT.................	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TGC-TCC-GGGTCTAGCTTAA.................	19	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................TGTCGGTTCACTGC-TCC-GGGT..........................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTCTAGCTTGG.................	28	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................CGGTTCACTGC-TCC-GGGTCTAT......................	22	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGTC.........................	20	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................CTTGTTGCGCTAGACGAGGCC.	21	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GAAGCGCTGTCGGTTCACTGC-TCC-GG............................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................ACAATTTTAG---ATCTTA--CAGTT...............................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................TCC-GGGTCTAGCTTGTTGCGCT...........	22	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................C-GGGTCTAGCTTGTTGCGCTAGACG......	25	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................TCTAGGAAGCGCTGTCGGTTCACTG....................................	25	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................CGGTTCACTGC-TCC-GGGTCTAG......................	22	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TCACTGC-TCC-GGGTCTAGT.....................	19	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................CGGTTCACTGC-TCC-GGGTCTAGCTT...................	25	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GC-TCC-GGGTCTAGCTTGTTGCGCT...........	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................TCTAGGAAGCGCTGTCGGTTCACTGC-TC................................	28	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................TCGGTTCACTGC-TCC-GGGT..........................	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AAGCGCTGTCGGTTCACTGC-TCC-GG............................	25	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................TAGGAAGCGCTGTCGGTTCACTGC-T.................................	25	20	0.05	1	0	1	0	0	0	0
...................................................................................................TTTACAATTTTAG---ATCTTA--CAGTT...............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TCACTGC-TCC-GGGTCTAGCTTGTTG...............	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GAAGCGCTGTCGGTTCACTGC-TCC-..............................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................ACTGC-TCC-GGGTCTAGCTTG..................	20	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................GCGCTGTCGGTTCACTGC-TCC-GGGTC.........................	26	20	0.05	1	0	1	0	0	0	0

droWil2

---------------------------------------------------------------------------------------------------GTAT---T----------------------TTATTTACGCATCGCAGTGCATTGGAA---TTTTTTTTTA--------------------------TGA---------------TATTGTTGTGCACACAATGTTGTGCTGTCGGCTCACTAT-TCCTGGGCCTGGCTTGATGCGCCAGACGGTGCGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

---------------------------------------------------------------------------------------------------A---CATTAGTTTTTTATAATA--TATAAAAAAAACATGCAACGCGGTGCATTTAAA----AAAATTATG------------------------------------------TTGTTTGGTGGGCGCTCTCAGTAGCGCTGTCGGCTTACTAC-TCC-AGGTCTAGCTTGGTGCGCTAGACGGGGCCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................TACTAC-TCC-AGGTCTAGCTTGGTGCGC............	27	3	1.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TCTCAGTAGCGCTGTCGGCTTAC......................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GTAGCGCTGTCGGCTTACTAC-TCC-AG............................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................AAA----AAAATTATG------------------------------------------TTGTTTGGT...................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCGGCTTACTAC-TCC-AGGTCTAGCTC...................	26	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCGGCTTACTAC-TCC-AGGTCTAGCT....................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCGGCTTACTAC-TCC-AGGTCTAGCTTG..................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGCTTACTAC-TCC-AGGTCTAGC.....................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTCGGCTTACTAC-TCC-AGGTCTAGC.....................	25	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TACTAC-TCC-AGGTCTAGCTTGGTGC..............	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCGGCTTACTAC-TCC-AGGTCTAGC.....................	24	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

---------------------------------------------------------------------------------------------------TT------------------------------ATTTATGCATCGCAGTGCATTACTA-----------------------------------------T---TATTATT---TTAATTGATGCGCACACTATGTTGTGCTGTCGGTTCACTTT-TCCTTGGTCTGGCTTGATGCGCCAGACGATGCCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................TTTATGCATCGCAGTGCA.........................................................................................................................................	18	8	0.13	1	1	0	0	0	0	0

-15.2	-14.6	-14.6	-14.4

dan_1451

scaffold_13221:65483-65633 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads