ID:

dan_1439

 Coordinate:

scaffold_13150:41156-41261 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-37.3 -37.2 -37.2

Flybase annnotation

intron [Dana\GF18978-in]; exon [dana_GLEANR_20368:2]; CDS [Dana\GF18978-cds]; CDS [Dana\GF18978-cds]; exon [dana_GLEANR_20368:3]; intron [Dana\GF18978-in]

No Repeatable elements found

mature
  1. scaffold_1661:613-633 -
  2. scaffold_5375:974-994 -
  3. scaffold_5375:4379-4399 -
  4. scaffold_5375:5191-5211 -
  5. scaffold_5375:5338-5358 -
  6. scaffold_5382:453-473 -
  7. scaffold_7609:425-445 -
  8. scaffold_8537:1373-1393 -
  9. scaffold_8795:414-434 -
  10. scaffold_9243:709-729 -
  11. scaffold_9243:770-790 -
  12. scaffold_9324:2434-2454 -
  13. scaffold_9324:3888-3908 -
  14. scaffold_9524:2308-2328 -
  15. scaffold_9524:5266-5286 -
  16. scaffold_9663:5918-5938 -
  17. dan_1439  scaffold_13150:41213-41233 -
  18. scaffold_13150:43784-43804 -
  19. scaffold_13150:72918-72938 -
  20. scaffold_13666:146-166 -
star

Sense Strand Reads

----------########################################----------------------------------------------------------------------------------------------------------##################################################
CCTCCTGCAGGGACAGGGCAAGTTGGGTGCGGCCATATCGCCTCCTCCAGGTCAGTGGCAGTGGCAGGGGTGTGCGCCTCCTCCAGCAGCCGGCCAGGTCGCCTCCTCCAGTTTAGGGGCAGGGGCAGGGGCAAACCAGGTCACCTCCTTCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTTAGGAGCAGGGGCCAGCCAGGTCGCC
**************************************************((....((..(((((...(((.(((.(((((((..((.(((.....))).))...((((......))))..)))).))).))).)))..)))))..))....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 M044
female body
 M058
embryo
 V055
head
...................................................TCATTGGCAATGGCAAGGGTGTG.................................................................................................................................... 23 3 10 0.10 1 0 1 0 0
..............................................................................TCCTCCAGCAGCCGGCCAGGT........................................................................................................... 21 0 20 0.10 2 0 0 2 0
.........................................................GCAGTGGCAGGGGGGGGCGC................................................................................................................................. 20 2 11 0.09 1 1 0 0 0
.......CATGGACAGGGCAAGTAG..................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 1
.................................................................................................GTCGCTTCCTCCAGTTTAGGGG....................................................................................... 22 1 20 0.05 1 0 1 0 0
....................................................................................................................................................TTCACCAGCCAGCCAGGTCGC..................................... 21 1 20 0.05 1 0 0 1 0
.......................................................................................................................................................................................GAGCACGGGCCAGCCAGGCCG.. 21 2 20 0.05 1 1 0 0 0
.......................................................................GTGCGCCTCCTCCAGCACCCG.................................................................................................................. 21 1 20 0.05 1 0 0 0 1
....................................ATCGCCTCCCCCGGGTGAGTG..................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

GGAGGACGTCCCTGTCCCGTTCAACCCACGCCGGTATAGCGGAGGAGGTCCAGTCACCGTCACCGTCCCCACACGCGGAGGAGGTCGTCGGCCGGTCCAGCGGAGGAGGTCAAATCCCCGTCCCCGTCCCCGTTTGGTCCAGTGGAGGAAGTCGTCGGTCGGTCCAGCGGAGGAGGTCCAATCCTCGTCCCCGGTCGGTCCAGCGG
**************************************************((....((..(((((...(((.(((.(((((((..((.(((.....))).))...((((......))))..)))).))).))).)))..)))))..))....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M044
female body
 M058
embryo
 V106
head
 V039
embryo
........CCCCTGTCCCGCTCGACCCACG................................................................................................................................................................................ 22 3 7 0.14 1 1 0 0 0 0
...TTACGTCCCTGTCCCGTTCTA...................................................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0
...TGACGACCCTGTCCCGTTCTA...................................................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0
...............................................................................................TCCAGCGGAGGAGGTCAAAGC.......................................................................................... 21 1 20 0.05 1 0 0 1 0 0
.....................................................................................................GGAGGAGGTCAAATCCCCGTC.................................................................................... 21 0 20 0.05 1 0 1 0 0 0
............................................................................................CGGTCCAGCGGAGGAGGTCAA............................................................................................. 21 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................CCCGTCCCCGTTAGGTCCAGT............................................................... 21 1 20 0.05 1 0 0 0 0 1
..............................................................................................................................................TGGAGGAAGTCGTCGGTCG............................................. 19 0 20 0.05 1 0 1 0 0 0
....................................................................CCACACGCGGAGGAGGTCGTC..................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
.......................................CGGAGGAGGTCCAGTCACTGT.................................................................................................................................................. 21 1 20 0.05 1 0 0 0 1 0
.......................................................................................................................................GGTCCAGTGGAGGAAGTCGTCG................................................. 22 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................TTTCGTCCCCGGTCGGTCCAGC.. 22 2 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................TCGGTCGGTCCAGCGGAGGAGGTC............................ 24 0 20 0.05 1 0 0 0 1 0
.......................................................................CACGCGGAGGAGGTCGTCG.................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................CGGAGGAGGTCCAATCCTCGT.................. 21 0 20 0.05 1 0 0 1 0 0
....................................TTGCGGAGGAGGTCCAGTC....................................................................................................................................................... 19 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13150:41106-41311 - dan_1439 CCTCCTGCAGGGACAGGGCAAGTTGGGTGCGGCCATATCGCCTCCTCCAGGTCAGTGGCAGTGGCAGGGGTGTGCGCCTCCTCCAGCAGCCGGCCAGGTCGCCTCCTCCAGTTTAGGGGCAGGGGCAGGGGCAAACCAGGTCACCTCCTTCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTTAGGAGCAGGGGCCAGCCAGGTCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCTCCTGCAGGGACAGGGCAAGTTGGGTGCGGCCATATCGCCTCCTCCAGGTCAGTGGCAGTGGCAGGGGTGTGCGCCTCCTCCAGCAGCCGGCCAGGTCGCCTCCTCCAGTTTAGGGGCAGGGGCAGGGGCAAACCAGGTCACCTCCTTCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTTAGGAGCAGGGGCCAGCCAGGTCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................TCCTCCAGCAGCCGGCCAGGT...........................................................................................................21200.102020000

Generated: 05/18/2015 at 01:49 AM