ID:

dan_1431

 Coordinate:

scaffold_13137:1024430-1024580 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF19596-cds]; exon [dana_GLEANR_2187:1]; intron [Dana\GF19596-in]

No Repeatable elements found

Sense Strand Reads

-------------------------------------#############---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTTCGTTTAAAGAACTGTTTTTATTTAAACATAGAAATGGGATATGATGGTAAGAAAAAACAAAAACTATAAAAGAAGATACAAGAACATCCATGTTTTAATAACAAGAGACAAAATAAATAGATTTGTTCCTTCCCACATATGCATGTACTTATGTACATACGTACTTATATTGTGAAATACACATTAAATTTGTTAACCAATTACGGTCTTAAAAGCATACAAGATATCCCGTAAATTTTTGTTTGCC
**************************************************.........((((((..........((((..(((((........((((((........))))))...........)))))..)))).....((((.((((((....)))))).))))....((.((((.....)))).))..))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V105
male body		 V039
embryo
 M044
female body
 V055
head
................................TTGAAATAGGAGATGATGGTAA..................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.............................ACATAGAAATGGGATATGATGGTAAG.................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...................TTTTATTTAAACATAGAAATGGGA................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
TTTTCGTTTAAAGAACTGTTTTTATTTA............................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................AAATAGAATTGTTTCTTACCAC............................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
............................................ATGAAGGTAAGAAAAGACA............................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0
.......................................................AAAAAGGAAAAACTATAAAAGAAGCT.......................................................................................................................................................................... 26 3 3 0.33 1 1 0 0 0 0 0
.......................ATTTAAACATAGCATTGCGAT............................................................................................................................................................................................................... 21 3 11 0.27 3 0 1 1 0 1 0
.....GTTAAAAGAACTGCTTTTATAT................................................................................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 1 0 0
.......................................................................................................AACAAGAGACAAAAGAAA.................................................................................................................................. 18 1 6 0.17 1 1 0 0 0 0 0
..............................................................................GATACAAGAACACCCTTTTTTT....................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
..........................................ATATGATGGGAAGAGAAAA.............................................................................................................................................................................................. 19 2 7 0.14 1 0 0 1 0 0 0
.......................................................................AAAAGAAGAAACAAGAACACC............................................................................................................................................................... 21 2 7 0.14 1 1 0 0 0 0 0
.......................................................................AACGGAAGATACAAGAAC.................................................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 0 1
.........................................................................AAGACGATGCAAGAACAACC.............................................................................................................................................................. 20 3 13 0.08 1 1 0 0 0 0 0
..........................................ATAGGATTGTAAGAAAAAA.............................................................................................................................................................................................. 19 2 15 0.07 1 0 0 1 0 0 0
..........................................................................AGAAGACACAAGAACAGC............................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AAAAGCAAATTTCTTGACAAAAATAAATTTGTATCTTTACCCTATACTACCATTCTTTTTTGTTTTTGATATTTTCTTCTATGTTCTTGTAGGTACAAAATTATTGTTCTCTGTTTTATTTATCTAAACAAGGAAGGGTGTATACGTACATGAATACATGTATGCATGAATATAACACTTTATGTGTAATTTAAACAATTGGTTAATGCCAGAATTTTCGTATGTTCTATAGGGCATTTAAAAACAAACGG
**************************************************.........((((((..........((((..(((((........((((((........))))))...........)))))..)))).....((((.((((((....)))))).))))....((.((((.....)))).))..))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M058
embryo
 V039
embryo
 M044
female body
.........................................................................................................................................................................................................GCTCATGCCACAATTTTCGTAT............................ 22 3 1 1.00 1 1 0 0 0
..........................................................................................................................TCGAAACAAGGAAGGGTT............................................................................................................... 18 2 6 0.33 2 0 2 0 0
.................................................................................TGTTATTCTAGGCACAAAATTA.................................................................................................................................................... 22 3 4 0.25 1 0 0 1 0
.........................................................................................................................TTCGAAACAAGGAAGGGTT............................................................................................................... 19 3 20 0.15 3 0 3 0 0
....................................................................................................................................TAAGGTTGTATACGTACGTG................................................................................................... 20 3 14 0.07 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13137:1024380-1024630 + dan_1431 TT-TTCGTTTAAAGAACTG----T---TT-------TTATT---T-AAACATAGAAATGGGATATGATGGTAAGAAAAA---ACAAAA------ACTA------TA--AAAGAAGATACAAGAACATCCATGTTTTAATAACAAGAGAC--AAAATAAATAGA--------------TTTGT------------------------------------TCCTTCCCACATATGCATGTACT-----------------------------------------------------------------------------------------------------------TATGTA--------C----ATACGT--------ACT----------------------TAT----ATTG-TG-------------AAATACAC-ATTAAATT--TGTTAACCA-A----------------------------------TTACGGTCTTAAAAGCATACAA------------------GAT--------------------------------------------------------------ATCCCGTAAATTTT------TGTTTGCC
droBip1 scf7180000396784:20433-20681 - AAATTCGTTTAAGGAACTG-------ATT-------TTTTC---A-AAACATAAAAATGGGATATGATGGTAAGGATAA---AATTAAAA----ACAGAAAATATAAGA---------AAAGAACATCTATGTTTTTTTTTTAA---ACAGAAAATAATTGGT-------------------------------------------------------TCGTTCCC-------------------------------------------------------------------------------GCATATG-T---ATGTACTAATATG-----CG-----------TATGTA--------C----ATTTGT--------GCT----------------------TGT----ATT---GTGAAAAAGATATAAAATA----------TT--TTTTAGTCAAA----------------------------------AAACGGTCCTAAAAGATTTTAA---------------------------------------GAT-----------------------------------------AACCTT---------------TTAATTA
droKik1 scf7180000302698:52413-52712 + TT-TAAATATTTAG----------TTTTT----TGTTCTTT---T-AAATTTGACAATGGGATACGATGGTAAGGCCTA---AGAAAATC--AA---C---------------------------------CGTTCAATGG---------------AATTGAA-CGCGTCAAATTGGAGTGTATAGAT---------------------------------------------------------------------------------------------------------------------GCACAAG-T---GTGTGCATGGCAAATGCATA-----------TGTGTG--------T----ACCCAA--------ATATAA--------------AACTAGTA-------------A---------AAAAAATATGGGTAAATT-------GC----AAAAAAAAGTATCTTGCGCTACTGCGAAGTTGTT----AATTAAATACGTGTATCCAA--------TA-------------------------ATGTTTTCATTATTTACAAATTAAATATTTTAAATGTTAATT-----------GTA-CGG------CGTTTAGT
droFic1 scf7180000453495:517957-518180 - TT-TTCGTTTAAAGACATAAATATTTATT-------TAAAT---T-A---AAAACAATGGGATATGATGGTAAGTTTGA---TATTAAGTGCAA---A---------------------------------------------------------TCGATGGCGTGCTGTGA-----ATAATCAAGAT---------------------------------------------------------------------------------------------------------------------GCCGAAG-T---ATGCATAAATAGA-----TG-----------TATGTG--------T----ATACAT--------ACATAG--------------CACTGTATAAT-ATTA-AGTAAAGAAG-TTAAAAAAGTTTTACCAGATT-----------------------------------------------------------------------------------GCAGCAGA---TGCTACT----A-AGCT----------------------------------------------------T--CT----CTTTTAAC
droEle1 scf7180000491182:5032-5260 + TT-TTCGTTTAAAAAGATA----TTAATT-------TTATT---T-ACATATAATAATGGGATACGATGGTGAGTTAAA---TGAAGTTAACAA---A---------------------------------------------------------TAATTGGCTCGCAT-------------TAAAAT---------------------------------------------------------------------------------------------------------------------GCTCGAG-T---GTGCATAAATGGA-----TG-----------TATGTG--------T----ATACAT--------ACATAC--------------AAGCGTATTAT-ATTA-AGTTGAGAAA-TTGAAAATGTGCAACCAAATT--TG----------------------------------------------------------------------TTTGACAATTCTGACGC---GCCCACT---CA--G-T-----------------------------------------TT---------T--T-TTTG-TTATTGT
droRho1 scf7180000779395:15760-15991 - TT-GTCGTTTATAAAGATA----TTTATT-------TTATT---T-AAATATAACAATGGGATATGATGGTGAGTTAAA---TGAAGACTG--A---A---------------------------------------------------------TACATGGCTCGCA-------------TTTAGAT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GTGCATAAATGGA-----TG-----------TATGCG--------TATACATACAT--------GCATAC--------------AAGCGTATTTT-ATTA-AGTAAAGAAA-TGAAAAATGTGCAACCAGATT--TG----------------------------------------------------------------------TTTGACAATGCAGAATT---GCCTGCTTTGCAGAG-T----------------------------------------------------T--T-AT---TTTCGAT
droBia1 scf7180000302126:756632-756887 + TT-TTCGTTTAAAGAGATA----TATATT-------TTAAT---T-GAGCACTGCAATGGGATATGATGGTGAGTTTGG---CCCGAAGTGCGA---C---------------------------------------------------------TGAATGGT-TGGACTGA---------ATTTGAT---------------------------------------------------------------------------------------------------------------------GTCCAAG-T---GTGCATAAATAGA-----TGT--ATG-----TATGTGTATA----CATACATACAT--------ATGTAA--------------AACTGTATGAT-ATTA-AGCAAAGAAA-TGGAAAATGTGCAATTAAATA--TG----------------------------------------------------------TGCGTACACATGTTTGATAAGGCTCAAACGCATT-T-C----TG-A--C-----------------------------------------CT---------T--T-TTTG-GTCTGGC
droTak1 scf7180000413933:27672-27729 + TT-TTCATTTAAAGAGTAG----ATATTT-------TGTTT---T-GAGTACGACAATGGGATATGATGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409008:1365383-1365610 + TT-TTCGTTTAAAA-GATA----TATATT-------TTAAC---T-AAATACAAAGATGGGATATGATGGTGAGTTTTA---AAACAAGTGTAA---A---------------------------------------------------------TAAGTGAA----AATGA---------TTTAGAT---------------------------------------------------------------------------------------------------------------------ACCCAAA-T---GTGCATAAATTTA-----TG-----------TATGCG--------TACGCATACAT--------ACATAC--------------AGCTGTATAAT-ATTA-AGTGAAGAAA-TAGAAAATATAGAAATTGCTT--TC----------------------------------------------------------------------TTCGGTAATGCAAAATA---GCCC-C----CAACG-T----------------------------------------------------T--T-CT---TTTTAGT
dm3 chrX:16252620-16252896 - TT-TTCGTGTTAAGAAATA----TTAATT-------TTATT---T-AGCAACAAGAATGGGATATGATGGTGAGTTCAA---TGAAGAGAGCAA---G---------------------------------------------------------TAAAGGGC-CGCACTGA---------ATTTGAT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GTGCATAAATAGA-----TGTTTATGTATAT-A----TATG----TATGCATACAT--------ACATAC--------------AACTATAAA---TGTA-TGCAAAGAAAGTGAAAAATGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCGCGGCAACGCA---GCCTGCT---CCTTG-TTTCATTTT-------------TTTTTATATGTAAAAAAGGTCT--GTTGAATTAG------GGTT---T
droSim2 x:15362865-15363075 - dsi_12172 TT-TTCGTGTAAAAAAA-A----TTTGTT-------TGATT---T-AGCAACAATAATGGGCTATGACGGTGAGTTCAA---TGAAGAGAGGAA---G---------------------------------------------------------TAAAGGGC-AGCACTGA---------ATTTAAT---------------------------------------------------------------------------------------------------------------------GTCCAAG-T---GTGCATAAATAGA-----TGTTTATGTATTT-A----TATGTATGT----ATGCAT--------ACATAC--------------AACTATAAATGTATAAATGCAAAGAAAGTGAAAAATGTGCAACTGAATT--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTATC
droSec2 scaffold_17:70194-70459 - TT-TTCGTGTAAAAAAATA----ATTTTT-------TGATT---T-AGCAACAAGAATGGGCTATGATGGTGAGTTCAA---TGAAGAGAGGAA---G---------------------------------------------------------TAAAGGGC-AGCACTGA---------ATTTAAT---------------------------------------------------------------------------------------------------------------------GTCTAAG-T---GTGCATAAATAGA-----TGTTTATGTATTT-A----TATGTATGTATGCATACAT--------ACATAC--------------AACTATATAT---AAA-TGCAAAGAAAGTGAAAAATGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCGCGGCAACACA---GCCTGTT---CCATG-TTTCTTT-T-------------TTTTTAAATGTTAAAAAGG-------------------------TGTG
droYak3 X:10373985-10374230 - TT-TTCGTTAAAAGAGATT----TACATT-------TGATT---C-AGCAACAACAATGGGCTATGATGGTGAGTTCAA---TTAACAGTGCA----G---------------------------------------------------------TAAATGGT-CGCACTGT---------ATTTGGT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GTGCATAAATAGA-----TG-----------TATGTG--------T----ATACAT--------ACATAC--------------AACTATAAA---TTTA-TGCAAAGG----GAAAAATGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCACGGCATTAGA---GTCTCCT---CCTTC-TTACATT---------------ACTTTATATGTTAAAAAGGT---------------------CTGTTGG
droEre2 scaffold_4690:10844704-10844761 + TT-TTCGTTAAAAGAGATA----TATATT-------TGATT---C-GGCAACAGCAATGGGCTATGATGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:9829971-9830208 - TT-TTTGTTTAAATAGAAA----TTTATT-------TTGTTGCAT-AAATTCGAAAATGGGCTATGATGGTAAGTTCGCAT-TGCAAAACAACA---GAACATATC---------------------------------------------------CGCGCA-CAAACTGT---------ATTT-------------------------------------------------------------------------------------------------------------TCGAT------GCGTAAG-T---GTACACAAATAAAG----TG-----------TACGTA--------C----ATATGCACATACAGTGAAAA--------------AACTACAAA-T-ATTG-TGCAAATC-----------GTACA---AAATT--TCGCAA---------------------------------------TTT---------ATCTGTATT------------GA-----------------------AGC--------------------------------------------AT--TTCATATTAT------GGTATATC
droPer2 scaffold_22:371622-371682 + TT-TTTGTTTAAATAGCAA----TTTATT-------TTTTTGCAT-AAATTCGAAAATGGGCTATGATGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:9141868-9142162 + TC-TTCAATTAAACAAGGA--TATTTATTTATTTA--TCTTACAAAAACAGCAATTATGGGCTATGATGGTAAGATAATCAATCAAAAAAATAATGAAAAAACAAAAAC---------CAAAAGCATCCGTGTGTGCGT-----------------------------------------------------------CTGTA--------------------------------------------------------AGCAAGATTAAAGTGCTCCTTCATTTTCTACATTGTCAATTGAAATGCTCAAAGTGATGATGATGAATATA-----CGT--ATA-----TATGCG--------C----ATATGT--------ACATACGCAATGTGTACCAAAAATATATCTT-AATA-GATAAAAAAA-AAGAACATGAATAAACAATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTTTTTTG
droVir3 scaffold_12970:7632622-7632736 + AC-AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCATGCATGGATGTACATACGTATATATGTGTATTTGTTGAATTTTCATATATTCTATCCCTTCAAT------ATGCCCG-T---G--TAACACTCAGG----TA-----------TGCGCA--------T----ATATGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGCG
droMoj3 scaffold_6482:2056223-2056493 - TT-TTCGTGTAAAAAGAT---------TT-------TTGTG---C-AAATATTATAATGGGATATGATGGTAAGTTGCA---ATTTTGCG----ACGTGATG-----------------------------------------------------CCCATGGT-TGAATCAT------GTGTACATATGCTCCAATGTGCTTAAGTTCAGGCTTCGGCTAATTT------ACACATGCATG-----------------------------------------------------------------------------------------------------------CATATA--------C----ATACGTACATAT--ACATAC--------------AAATGTATAAG-TTTA-CGTAAATA-------GAATAGGCAACTGTGTTAATGCTTGCCA-A----------------------------------TTTAGATTGCACATGTGTATTTAC--------TATAACATTAGA------------------------------------------------------------------------GAC------TGTTTATT
droGri2 scaffold_15203:6984388-6984649 - AT--TCGTTTAAATCTATA----TT--GT-------TTGTG---T-AAATATCACCATGGGATATGATGGTAAGTGACA---ACATTTAA----GTACAATGACATCCCTTGAAGTTACGTATATATCAACG-----------------------------------------------------------------TTCGTAAGTACGAGCATCGGTTAATTT---------------------------------------------------------------------------------ACACATG-C---ATGCATGTATGTA-----TG-----------CATGTA--------C----ATAAGT--------TCACAT--------------AAATA---------------------------GAATACACGAATGTATTAATGCTTGCAA-A----------------------------------TTTAGACTTGACATGTGTACTTAG--------GAAAACA--------TC-A-T----TG-A--C-----------------------------------------GT---------TG-TT----TGTTTAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TT-TTCGTTTAAAGAACTG----T---TT-------TTATT---T-AAACATAGAAATGGGATATGATGGTAAGAAAAA---ACAAAA------ACTA------TA--AAAGAAGATACAAGAACATCCATGTTTTAATAACAAGAGAC--AAAATAAATAGA--------------TTTGT------------------------------------TCCTTCCCACATATGCATGTACT-----------------------------------------------------------------------------------------------------------TATGTA--------C----ATACGT--------ACT----------------------TAT----ATTG-TG-------------AAATACAC-ATTAAATT--TGTTAACCA-A----------------------------------TTACGGTCTTAAAAGCATACAA------------------GAT--------------------------------------------------------------ATCCCGTAAATTTT------TGTTTGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................ACATAGAAATGGGATATGATGGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...........................TT-------TTATT---T-AAACATAGAAATGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
TT-TTCGTTTAAAGAACTG----T---TT-------TTATT---T-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droBip1
AAATTCGTTTAAGGAACTG-------ATT-------TTTTC---A-AAACATAAAAATGGGATATGATGGTAAGGATAA---AATTAAAA----ACAGAAAATATAAGA---------AAAGAACATCTATGTTTTTTTTTTAA---ACAGAAAATAATTGGT-------------------------------------------------------TCGTTCCC-------------------------------------------------------------------------------GCATATG-T---ATGTACTAATATG-----CG-----------TATGTA--------C----ATTTGT--------GCT----------------------TGT----ATT---GTGAAAAAGATATAAAATA----------TT--TTTTAGTCAAA----------------------------------AAACGGTCCTAAAAGATTTTAA---------------------------------------GAT-----------------------------------------AACCTT---------------TTAATTASizeHit CountTotal NormTotal
No Reads
droKik1
TT-TAAATATTTAG----------TTTTT----TGTTCTTT---T-AAATTTGACAATGGGATACGATGGTAAGGCCTA---AGAAAATC--AA---C---------------------------------CGTTCAATGG---------------AATTGAA-CGCGTCAAATTGGAGTGTATAGAT---------------------------------------------------------------------------------------------------------------------GCACAAG-T---GTGTGCATGGCAAATGCATA-----------TGTGTG--------T----ACCCAA--------ATATAA--------------AACTAGTA-------------A---------AAAAAATATGGGTAAATT-------GC----AAAAAAAAGTATCTTGCGCTACTGCGAAGTTGTT----AATTAAATACGTGTATCCAA--------TA-------------------------ATGTTTTCATTATTTACAAATTAAATATTTTAAATGTTAATT-----------GTA-CGG------CGTTTAGTSizeHit CountTotal NormTotal
No Reads
droFic1
TT-TTCGTTTAAAGACATAAATATTTATT-------TAAAT---T-A---AAAACAATGGGATATGATGGTAAGTTTGA---TATTAAGTGCAA---A---------------------------------------------------------TCGATGGCGTGCTGTGA-----ATAATCAAGAT---------------------------------------------------------------------------------------------------------------------GCCGAAG-T---ATGCATAAATAGA-----TG-----------TATGTG--------T----ATACAT--------ACATAG--------------CACTGTATAAT-ATTA-AGTAAAGAAG-TTAAAAAAGTTTTACCAGATT-----------------------------------------------------------------------------------GCAGCAGA---TGCTACT----A-AGCT----------------------------------------------------T--CT----CTTTTAACSizeHit CountTotal NormTotal
No Reads
droEle1
TT-TTCGTTTAAAAAGATA----TTAATT-------TTATT---T-ACATATAATAATGGGATACGATGGTGAGTTAAA---TGAAGTTAACAA---A---------------------------------------------------------TAATTGGCTCGCAT-------------TAAAAT---------------------------------------------------------------------------------------------------------------------GCTCGAG-T---GTGCATAAATGGA-----TG-----------TATGTG--------T----ATACAT--------ACATAC--------------AAGCGTATTAT-ATTA-AGTTGAGAAA-TTGAAAATGTGCAACCAAATT--TG----------------------------------------------------------------------TTTGACAATTCTGACGC---GCCCACT---CA--G-T-----------------------------------------TT---------T--T-TTTG-TTATTGTSizeHit CountTotal NormTotal
No Reads
droRho1
TT-GTCGTTTATAAAGATA----TTTATT-------TTATT---T-AAATATAACAATGGGATATGATGGTGAGTTAAA---TGAAGACTG--A---A---------------------------------------------------------TACATGGCTCGCA-------------TTTAGAT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GTGCATAAATGGA-----TG-----------TATGCG--------TATACATACAT--------GCATAC--------------AAGCGTATTTT-ATTA-AGTAAAGAAA-TGAAAAATGTGCAACCAGATT--TG----------------------------------------------------------------------TTTGACAATGCAGAATT---GCCTGCTTTGCAGAG-T----------------------------------------------------T--T-AT---TTTCGATSizeHit CountTotal NormTotal
No Reads
droBia1
TT-TTCGTTTAAAGAGATA----TATATT-------TTAAT---T-GAGCACTGCAATGGGATATGATGGTGAGTTTGG---CCCGAAGTGCGA---C---------------------------------------------------------TGAATGGT-TGGACTGA---------ATTTGAT---------------------------------------------------------------------------------------------------------------------GTCCAAG-T---GTGCATAAATAGA-----TGT--ATG-----TATGTGTATA----CATACATACAT--------ATGTAA--------------AACTGTATGAT-ATTA-AGCAAAGAAA-TGGAAAATGTGCAATTAAATA--TG----------------------------------------------------------TGCGTACACATGTTTGATAAGGCTCAAACGCATT-T-C----TG-A--C-----------------------------------------CT---------T--T-TTTG-GTCTGGCSizeHit CountTotal NormTotal
No Reads
droTak1
TT-TTCATTTAAAGAGTAG----ATATTT-------TGTTT---T-GAGTACGACAATGGGATATGATGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TT-TTCGTTTAAAA-GATA----TATATT-------TTAAC---T-AAATACAAAGATGGGATATGATGGTGAGTTTTA---AAACAAGTGTAA---A---------------------------------------------------------TAAGTGAA----AATGA---------TTTAGAT---------------------------------------------------------------------------------------------------------------------ACCCAAA-T---GTGCATAAATTTA-----TG-----------TATGCG--------TACGCATACAT--------ACATAC--------------AGCTGTATAAT-ATTA-AGTGAAGAAA-TAGAAAATATAGAAATTGCTT--TC----------------------------------------------------------------------TTCGGTAATGCAAAATA---GCCC-C----CAACG-T----------------------------------------------------T--T-CT---TTTTAGTSizeHit CountTotal NormTotal
No Reads
dm3
TT-TTCGTGTTAAGAAATA----TTAATT-------TTATT---T-AGCAACAAGAATGGGATATGATGGTGAGTTCAA---TGAAGAGAGCAA---G---------------------------------------------------------TAAAGGGC-CGCACTGA---------ATTTGAT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GTGCATAAATAGA-----TGTTTATGTATAT-A----TATG----TATGCATACAT--------ACATAC--------------AACTATAAA---TGTA-TGCAAAGAAAGTGAAAAATGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCGCGGCAACGCA---GCCTGCT---CCTTG-TTTCATTTT-------------TTTTTATATGTAAAAAAGGTCT--GTTGAATTAG------GGTT---TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................AACAAGAATGGGATATGATGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000
.................................................AACAAGAATGGGATATGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................T-AGCAACAAGAATGGGATATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTGAGTTCAA---TGAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTAAAAAAGGTCT--G.......................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.T-TTCGTGTTAAGAAATA----TTAATT-------TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.T-TTCGTGTTAAGAAATA----TTAATT-------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATT--TG----------------------------------------------------------------------TTTATCGCGGCAAC............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TA----TTAATT-------TTATT---T-AGCAACAAGAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCAACAAGAATGGGATATGATGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................GAGTTCAA---TGAAGAGAGCAA---G---------------------------------------------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
....................................................AAGAATGGGATATGATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................TT---T-AGCAACAAGAATGGGATATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCGCGGC...............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AGCAACAAGAATGGGATATGATGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AACAAGAATGGGATATGATGGTGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................TT-------TTATT---T-AGCAACAAGAATGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTCGTGTTAAGAAATA----TTAATT-------TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................TGAAGAGAGCAA---G---------------------------------------------------------TAAAGGGC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATT---T-AGCAACAAGAATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GGTGAGTTCAA---TGAAGAGAGCAA---G---------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..........................................................................................................................................................................GA---------ATTTGAT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GT.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCGCGGCAACGCA---GCCT..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTGAGTTCAA---TGAAGAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGAATT--TG----------------------------------------------------------------------TTTATCGCGGC...............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TT-TTCGTGTTAAGAAATA----TTAATT-------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CAAGAATGGGATATGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.T-TTCGTGTTAAGAAATA----TTAATT-------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TATT---T-AGCAACAAGAATGGGATATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TT-TTCGTGTTAAGAAATA----TTAATT-------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATT-------TTATT---T-AGCAACAAGAATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAGAATGGGATATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TT---T-AGCAACAAGAATGGGATATGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TT---T-AGCAACAAGAATGGGATATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................T-AGCAACAAGAATGGGATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATT---T-AGCAACAAGAATGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................ATT---T-AGCAACAAGAATGGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCAACTGAATT--TG----------------------------------------------------------------------..........................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....TCGTGTTAAGAAATA----TTAATT-------TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAAAGGGC-CGCACTGA---------ATTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TA----TTAATT-------TTATT---T-AGCAACAAGAATGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGAAATA----TTAATT-------TTATT---T-AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AACAAGAATGGGATATGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAGGTCT--GTTGAATTAG------GA......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATT---T-AGCAACAAGAATGGGATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................T-AGCAACAAGAATGGGATATGATGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TGTTTATGTATAT-A----TATG----TAT.........................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TGTTTATGTATAT-A----TATG----TATGGT......................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
TT-TTCGTGTAAAAAAA-A----TTTGTT-------TGATT---T-AGCAACAATAATGGGCTATGACGGTGAGTTCAA---TGAAGAGAGGAA---G---------------------------------------------------------TAAAGGGC-AGCACTGA---------ATTTAAT---------------------------------------------------------------------------------------------------------------------GTCCAAG-T---GTGCATAAATAGA-----TGTTTATGTATTT-A----TATGTATGT----ATGCAT--------ACATAC--------------AACTATAAATGTATAAATGCAAAGAAAGTGAAAAATGTGCAACTGAATT--T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................AACAATAATGGGCTATGACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300000000000003000
..................A----TTTGTT-------TGATT---T-AGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.......................................................AATGGGCTATGACGGTGAGTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
........................................................ATGGGCTATGACGGTGAGTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................A-A----TTTGTT-------TGATT---T-AGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..................A----TTTGTT-------TGATT---T-AGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
....................................................AATAATGGGCTATGACGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000000000
.............AAAA-A----TTTGTT-------TGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.14100000000001000000
..............AAA-A----TTTGTT-------TGATT---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1590.11100000000001000000
droSec2
TT-TTCGTGTAAAAAAATA----ATTTTT-------TGATT---T-AGCAACAAGAATGGGCTATGATGGTGAGTTCAA---TGAAGAGAGGAA---G---------------------------------------------------------TAAAGGGC-AGCACTGA---------ATTTAAT---------------------------------------------------------------------------------------------------------------------GTCTAAG-T---GTGCATAAATAGA-----TGTTTATGTATTT-A----TATGTATGTATGCATACAT--------ACATAC--------------AACTATATAT---AAA-TGCAAAGAAAGTGAAAAATGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCGCGGCAACACA---GCCTGTT---CCATG-TTTCTTT-T-------------TTTTTAAATGTTAAAAAGG-------------------------TGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGAAAGTGAAAAATG................................................................................................................................................................................................1911.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---AAA-TGCAAAGAAAGTGAAAAA..................................................................................................................................................................................................2511.0010001
...............................................GCAACAAGAATGGGCTATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
droYak3
TT-TTCGTTAAAAGAGATT----TACATT-------TGATT---C-AGCAACAACAATGGGCTATGATGGTGAGTTCAA---TTAACAGTGCA----G---------------------------------------------------------TAAATGGT-CGCACTGT---------ATTTGGT---------------------------------------------------------------------------------------------------------------------GCCCAAG-T---GTGCATAAATAGA-----TG-----------TATGTG--------T----ATACAT--------ACATAC--------------AACTATAAA---TTTA-TGCAAAGG----GAAAAATGTGCAACTGAATT--TG----------------------------------------------------------------------TTTATCACGGCATTAGA---GTCTCCT---CCTTC-TTACATT---------------ACTTTATATGTTAAAAAGGT---------------------CTGTTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TT-TTCGTTAAAAGAGATA----TATATT-------TGATT---C-GGCAACAGCAATGGGCTATGATGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................TT---C-GGCAACAGCAATGGGCTATGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
................ATA----TATATT-------TGATT---C-GGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
dp5
TT-TTTGTTTAAATAGAAA----TTTATT-------TTGTTGCAT-AAATTCGAAAATGGGCTATGATGGTAAGTTCGCAT-TGCAAAACAACA---GAACATATC---------------------------------------------------CGCGCA-CAAACTGT---------ATTT-------------------------------------------------------------------------------------------------------------TCGAT------GCGTAAG-T---GTACACAAATAAAG----TG-----------TACGTA--------C----ATATGCACATACAGTGAAAA--------------AACTACAAA-T-ATTG-TGCAAATC-----------GTACA---AAATT--TCGCAA---------------------------------------TTT---------ATCTGTATT------------GA-----------------------AGC--------------------------------------------AT--TTCATATTAT------GGTATATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................TTCGAAAATGGGCTATGATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................TATC---------------------------------------------------CGCGCA-CAAACTGT---------ATTT-------------------------------------------------------------------------------------------------------------TCGA............................................................................................................................................................................................................................................................................................................................................2611.0010000000010
.........................................GCAT-AAATTCGAAAATGGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................AA----TTTATT-------TTGTTGCAT-AAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TT-TTTGTTTAAATAGCAA----TTTATT-------TTTTTGCAT-AAATTCGAAAATGGGCTATGATGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................TTCGAAAATGGGCTATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droWil2
TC-TTCAATTAAACAAGGA--TATTTATTTATTTA--TCTTACAAAAACAGCAATTATGGGCTATGATGGTAAGATAATCAATCAAAAAAATAATGAAAAAACAAAAAC---------CAAAAGCATCCGTGTGTGCGT-----------------------------------------------------------CTGTA--------------------------------------------------------AGCAAGATTAAAGTGCTCCTTCATTTTCTACATTGTCAATTGAAATGCTCAAAGTGATGATGATGAATATA-----CGT--ATA-----TATGCG--------C----ATATGT--------ACATACGCAATGTGTACCAAAAATATATCTT-AATA-GATAAAAAAA-AAGAACATGAATAAACAATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTTTTTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................A--TCTTACAAAAACAGCAATTATGGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...............................................ACAGCAATTATGGGCTATGATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
droVir3
AC-AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCATGCATGGATGTACATACGTATATATGTGTATTTGTTGAATTTTCATATATTCTATCCCTTCAAT------ATGCCCG-T---G--TAACACTCAGG----TA-----------TGCGCA--------T----ATATGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCATGCATGGATGTACA.............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TAACACTCAGG----TA-----------TGCGCA--------T----A......................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
droMoj3
TT-TTCGTGTAAAAAGAT---------TT-------TTGTG---C-AAATATTATAATGGGATATGATGGTAAGTTGCA---ATTTTGCG----ACGTGATG-----------------------------------------------------CCCATGGT-TGAATCAT------GTGTACATATGCTCCAATGTGCTTAAGTTCAGGCTTCGGCTAATTT------ACACATGCATG-----------------------------------------------------------------------------------------------------------CATATA--------C----ATACGTACATAT--ACATAC--------------AAATGTATAAG-TTTA-CGTAAATA-------GAATAGGCAACTGTGTTAATGCTTGCCA-A----------------------------------TTTAGATTGCACATGTGTATTTAC--------TATAACATTAGA------------------------------------------------------------------------GAC------TGTTTATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........AAAAGAT---------TT-------TTGTG---C-AAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19523.8011987522716
............AAAGAT---------TT-------TTGTG---C-AAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18513.406739182152
...........AAAAGAT---------TT-------TTGTG---C-AAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1853.00151211100
...TTCGTGTAAAAAGAT---------TT-------TTGTG---C-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.............AAGAT---------TT-------TTGTG---C-AAATAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000010
............AAAGAT---------TT-------TTGTG---C-AAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1750.201000100
............AAAGAT---------TT-------TTGTG---C-AAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171000010
droGri2
AT--TCGTTTAAATCTATA----TT--GT-------TTGTG---T-AAATATCACCATGGGATATGATGGTAAGTGACA---ACATTTAA----GTACAATGACATCCCTTGAAGTTACGTATATATCAACG-----------------------------------------------------------------TTCGTAAGTACGAGCATCGGTTAATTT---------------------------------------------------------------------------------ACACATG-C---ATGCATGTATGTA-----TG-----------CATGTA--------C----ATAAGT--------TCACAT--------------AAATA---------------------------GAATACACGAATGTATTAATGCTTGCAA-A----------------------------------TTTAGACTTGACATGTGTACTTAG--------GAAAACA--------TC-A-T----TG-A--C-----------------------------------------GT---------TG-TT----TGTTTAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:34 AM