ID:

dan_1423

 Coordinate:

scaffold_13137:548401-548551 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.0 -20.9 -20.9

Flybase annnotation

CDS [Dana\GF19557-cds]; exon [dana_GLEANR_2160:2]; intron [Dana\GF19557-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGCTTGAGGCACAGCCGCATGATTGTTGTGAATCATCACAACCATGACAGTGAGTTTTTTCTAATTTATTTTTACAAAAACCATTTGAGCCATTTGGTCGTGTTAGGATATATATATAGGATTTAGTGGACCTATATCGACCGCTTAGACTTAAATACTGCGTGCAGAGAAAATAAGAATGTGTGCAAAGTTTCATGTCGATAGCTTTTAAACTGGGAGCAAAAAAACAGACAAACGACTGATCCTGATT
*********************************************************************************...(((((((.....(((((...((((.(((..............)))..))))...))))))))))))...((((..((((((((.............))))))))..)))).....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 V105
male body		 M058
embryo
 V055
head
 V039
embryo
..................................................................................................................................................................................AATGTGTGCAAAGTTTCATGT.................................................... 21 0 1 7.00 7 7 0 0 0 0 0
.................................................................................CCATTTGAGCCATTTGGTCGT..................................................................................................................................................... 21 0 1 4.00 4 0 3 1 0 0 0
.................................................................................................................................................TTAGACTTAAATGCTGCGTGC..................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
......................................................................................................................................................................AGAGAAAATAAGAATGTGTGC................................................................ 21 0 1 3.00 3 2 0 1 0 0 0
..........................................................................................CCATTTGGTCGTGTTAGGAT............................................................................................................................................. 20 0 1 2.00 2 0 1 1 0 0 0
...........................................................................................CATTAGGTCGTGATAGGA.............................................................................................................................................. 18 2 1 2.00 2 0 2 0 0 0 0
........................................AGCCATGACAGTGAGTTTTT............................................................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................................CAAAAAAACAGACAAACGACT.......... 21 0 1 2.00 2 1 1 0 0 0 0
......GAGGCACAGCCGCATGATTGT................................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................ATATATAGGATTTAGTGGACC...................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................TATATATATAGGATTTAGTGG......................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0
...........................................................................................CATTTGGTCGTGTTAGGATATA.......................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0
..................................................................................................................................................TAGACTTAAATACTGCGTGCA.................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0
.........................................................................................GCCATTTGGTCGTGTTAGGA.............................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................TGGACCTATATCGACCGCTTA....................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
..........................................................................ACAAAAACCATTTGAGCCATT............................................................................................................................................................ 21 0 1 2.00 2 0 1 1 0 0 0
......................................................................................................................................................CTTAAATACTGCGTGCAGAG................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................................................................CACAATCGACCGATCCTGAT. 20 3 20 1.55 31 4 19 3 1 4 0
.......................................................................................................................................................................................................................................ACAATCGACCGATCCTGAT. 19 2 13 1.46 19 0 19 0 0 0 0
.....................................................................................................................................................................................GTGTGCAAAGTTTCATGTCGA................................................. 21 0 6 1.33 8 6 0 2 0 0 0
...............................................................AATTTATTTTTATAAATACCA....................................................................................................................................................................... 21 2 9 1.11 10 0 5 0 5 0 0
............................................................................................................................TAGTGGACCTATATCGACCGC.......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................AACAGACAAACGACTGATCCT.... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................ACCTATATCGACCGCTTAGAC.................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
......GAGGCACAGCCTCATGATTGT................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................CAGAGAAAATAAGAATGTGTGC................................................................ 22 0 1 1.00 1 0 0 0 1 0 0
......................................................................................................GTTAGGATATATATATAGGAT................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.......AGGCACAGCCGCATGATTGTT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................GACCGCTTAGACTTAAATACTGCGT....................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................ATAGCTTTTAAACTGGGAGCA............................. 21 0 1 1.00 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................CAGACAAACGACTGATCCTGA.. 21 0 1 1.00 1 0 1 0 0 0 0
.........................................................................TACAGGGACCATTTGAGCCATTT........................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0
...................................................................................ATTTGAGCCATTTGGTCGTGT................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.................................TCATCACAGCCATGACAGTG...................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................ACAGACAAACGACTGATCCTG... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................CATTTGAGCCATTTGGTCGTT.................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................GCCATTTGGTCGTGTTAGG............................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TATATCGACCGCTTAGACTTA................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
.....................GATTGTTGTGAATCATCACAA................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................AATGTGTGCAAGGTTTCATGTC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................TGAGCCATGTGGTCGTGTTAG................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................GAGCCATTTGGTCGTGTTAGG............................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................TAGGATTTAGTGGACCTATAT................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...............................AATCATCACAACCATGACAG........................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................TTAGTGGACCTATATCGACCG........................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................CTATATCGACCGCTTAGACTT.................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................GCGTGCAGAGAAGATAAGA........................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................GTGGACCTATATCGACCGCTT........................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................AGCCATTTGGTCGTGTTAGG............................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................................................................GATAGTTTTTAAACTGGGAGC.............................. 21 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................CTTAGACTTAAATACTGCGT....................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................GACAAACGACTGATCCTGATT 21 0 1 1.00 1 0 1 0 0 0 0
.........GCACAGCCGCATGATTGTTGT............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................GTTAGGATATATATATGGGAT................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................AATGTGAGCAAAGTTTCCTGT.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................TTTGGTCGTGTTGGGATATA.......................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................................TATGTATAGGATTTGGTGGAC....................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................CCATTTGGTCGTGTTAGGATA............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................TTGGTCGTGTTAGGATATATA........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................TTTACAAAAACCATTTGAGCC............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
..............................................................................................................GTATATATAGGATTTAGTGGA........................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
...............................AATCATCACAACCATGACAGT....................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................CAGACAAACGACTGATCCTG... 20 0 1 1.00 1 0 1 0 0 0 0
.........................................................................TACAAAGACCATTTGAGCCAT............................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................TACAAAAACCATTTGAGCCAT............................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................TTGAGCCATTTGGTCGTGTTA................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................ATTTGGTCGTGTTAGGATATA.......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................CATGACAGTGAGTTTTTTCTA........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................CAGACAAAGGACTGATCCTGA.. 21 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................TGTCGATAGCTTCTAAACTGG.................................. 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................TAGCTTTTAAACTGGGAGC.............................. 19 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................CAGAGAAAATAAGAATGTGTG................................................................. 21 0 1 1.00 1 0 0 0 0 1 0
................................................................................................................................................CTTAGACTGAAATACTGCGT....................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
........................................................................................AGCCATTTGGTCGTGTTAGGA.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................TAATTAATTTTTATAAAAACCA....................................................................................................................................................................... 22 2 6 0.67 4 0 0 0 4 0 0
..........................................................................................................................................................................................CAAAGTTTCATGTCGATAGCT............................................ 21 0 6 0.67 4 3 1 0 0 0 0
...................................................................................................................................................................................ATGTGTGCAAAGTTTCATGTC................................................... 21 0 5 0.60 3 3 0 0 0 0 0
........................................................................................................................................................................................................................................CAATCGACCGATCCTGAT. 18 2 17 0.59 10 0 7 0 0 3 0
................................................................................................................ATATGTAGGATTTGGTGGACC...................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................CTATGTCGACCGCTTGGACTT.................................................................................................. 21 2 2 0.50 1 0 1 0 0 0 0
.......................................................................................................................................................................................................CGATAGCTTTTAAACTGGGAG............................... 21 0 2 0.50 1 0 0 1 0 0 0
........................................................................TTACAGGGACCATTTGAGCCA.............................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................GTGCAAGGTTTCATGTCGATA............................................... 21 1 4 0.50 2 2 0 0 0 0 0
..................................................................................................................................................TAGACTTAGATACTGCGTGCA.................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
...............................................................AATTTATTTTTATAAAAACCC....................................................................................................................................................................... 21 2 8 0.50 4 0 0 0 4 0 0
.......................................................................................................................................................................................GTGCAAAGTTTCATGTCGATAGC............................................. 23 0 4 0.50 2 2 0 0 0 0 0
...............................................................AATTAATTTTTATAAAAACCA....................................................................................................................................................................... 21 2 14 0.43 6 0 1 0 5 0 0
.....................................................................................................................................................................................................................................GCACAATCGACTGATCCTGAT. 21 3 5 0.40 2 0 1 1 0 0 0
.......................................................................................................................................................................................................................................ACAATCGACCGATCCTGA.. 18 2 20 0.35 7 0 6 0 0 1 0
......................................................................................................................................................................................................TCGATAGCTTTTGGACTGGGA................................ 21 2 3 0.33 1 0 0 1 0 0 0
..............................................................TAATTTATTTTTATAAATACCA....................................................................................................................................................................... 22 2 3 0.33 1 0 0 0 1 0 0
...........................................................................................................................................................................AAATAAGAATGTGTGCAAAGT........................................................... 21 0 4 0.25 1 0 0 1 0 0 0
...........................................................................................CATTAGGTCGTGATAGGAGA............................................................................................................................................ 20 3 4 0.25 1 0 0 1 0 0 0
.......................................................................................................................................................................................GTGCAAAGTTTCATGTCGATA............................................... 21 0 4 0.25 1 1 0 0 0 0 0
...............................................................AATTTATTTTTATAAAAACC........................................................................................................................................................................ 20 1 4 0.25 1 0 0 0 1 0 0
...........................................................................................................................................................................................AAAGTTTCATGTCGATAGCTT........................................... 21 0 4 0.25 1 0 1 0 0 0 0
...............................................................AATTAATTTTTACAAATACCA....................................................................................................................................................................... 21 2 5 0.20 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................GAAAAACAGACAGGCGACTGA........ 21 3 5 0.20 1 0 1 0 0 0 0
........................................GGCCGTGACAGTGAGTTTTTT.............................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0
...........................................CATCACAGTGAGTTCTTGC............................................................................................................................................................................................. 19 3 20 0.20 4 4 0 0 0 0 0
..........................................................................................................................................................................................CAAAGTTTCATGTCGATGGCT............................................ 21 1 7 0.14 1 0 0 1 0 0 0
.....................................................................................................................................................................................GTGTGCAGAGTTTCATGTCGA................................................. 21 1 7 0.14 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GCACAATCGACTGATCCTGA.. 20 3 7 0.14 1 0 1 0 0 0 0
.......................................................................................................................................................................................GTGCAAAGTTTCATGTCGATG............................................... 21 1 8 0.13 1 0 1 0 0 0 0
...................................................................................................................................................................................ATGTGTGCAAGGTTTCGTGTC................................................... 21 2 8 0.13 1 1 0 0 0 0 0
.........................................................................................................................................................................................................ATGGCTTTTGAACTGGGAG............................... 19 2 9 0.11 1 1 0 0 0 0 0
..............................................................................GGGCCATTTGAGCCATTTGGT........................................................................................................................................................ 21 3 9 0.11 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................GAGATAAAAAACAGACAAACCA............ 22 3 10 0.10 1 0 0 0 1 0 0
............................................................................................................................................................TACCGCGTGAAGAGAAGAT............................................................................ 19 3 10 0.10 1 0 0 0 0 1 0
.................................................................................................................TAGATGGGATTTGGTGGACCT..................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................................................................................CAGGGTTTCATGTCGATGGCT............................................ 21 3 11 0.09 1 0 0 0 0 0 1
..............................................................TAATTAATTTTTATAAAAACC........................................................................................................................................................................ 21 2 13 0.08 1 0 0 0 1 0 0
..........................................................................ACAAAAACGACTTGAGCCAG............................................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 1 0
............................................................................................ATCTGGTAGTGTTAGGATACATA........................................................................................................................................ 23 3 15 0.07 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................GGACAATCGACCGATCCTGA.. 20 3 16 0.06 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................ACACAATCGACCGATCCTGAT. 21 3 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................GGAAAAAAACAGACGAAC.............. 18 2 20 0.05 1 0 0 0 1 0 0
................................................................ATTAATTTTTATAAAAACCA....................................................................................................................................................................... 20 2 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................GCAAAGACACAGACCAACGA............ 20 3 20 0.05 1 0 0 0 0 0 1
.........................................................................................................................ATATAGTTGACCTATATC................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GTCGAACTCCGTGTCGGCGTACTAACAACACTTAGTAGTGTTGGTACTGTCACTCAAAAAAGATTAAATAAAAATGTTTTTGGTAAACTCGGTAAACCAGCACAATCCTATATATATATCCTAAATCACCTGGATATAGCTGGCGAATCTGAATTTATGACGCACGTCTCTTTTATTCTTACACACGTTTCAAAGTACAGCTATCGAAAATTTGACCCTCGTTTTTTTGTCTGTTTGCTGACTAGGACTAA
****************************************************...(((((((.....(((((...((((.(((..............)))..))))...))))))))))))...((((..((((((((.............))))))))..)))).....********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V105
male body		 M058
embryo
 V055
head
 V039
embryo
......................................................................................ACTCGGTAAACCAGCACAATC................................................................................................................................................ 21 0 1 6.00 6 1 4 1 0 0 0
......................................................................................................................................................................................................................................CTGTTTGCTGACTAGGACTAA 21 0 1 5.00 5 0 5 0 0 0 0
...............................................................................................................................ACCTGGATATAGCTGGCGAAT....................................................................................................... 21 0 1 3.00 3 0 1 2 0 0 0
.......TCCGTGTCGGCGTACTAACAA............................................................................................................................................................................................................................... 21 0 1 3.00 3 1 0 0 2 0 0
...................................................................................................................................GGATATAGCTGGCGAATCTGAA.................................................................................................. 22 0 1 3.00 3 0 3 0 0 0 0
....................................................................................................................................................................................................................................GTCTGTTTGCTGACTAGGACT.. 21 0 1 3.00 3 3 0 0 0 0 0
...........TGTCGGCGTACTAACAACACT........................................................................................................................................................................................................................... 21 0 1 3.00 3 2 0 0 1 0 0
........CCGTGTCGGCGTACTAACAAC.............................................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0
................................................................................................................................CCTGGATATAGCTGGCGAATC...................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
.............TCGGCGTACTAACAACACTTA......................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
......CTCCGTGTCGGCGTACTAACA................................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0
...........................................................................GTTTTTGGTAAACTCGGTAAA........................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
.TCGAACTCCGTGTCGGCGTAC..................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0
.........CGTGTCGGCGTACTAACAACA............................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................GGATATAGCTGGCGAATCTGG................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...............................................................................................................................................................ACGCACGTCTCTTTTATTCTT....................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
.......TCCGTGTCGGCGTGCTAACAA............................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................ACACTTAGTAGTGTTGGTACT........................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0
............GTCGGCGTACTAACAACACTT.......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0
.................................................................................GGTAAACTCGGTAAACCAGC...................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................GTAGTGTTGGTACTGTCACTC.................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...GAACTCCGTGTCGGCGTACTA................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GCTGGCGAATCTGAATTTATG............................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTGTCTGTTTGCTGACTAGGA.... 21 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................CTGGCGAATCTGAATTTGTGGC.......................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................CTTACACACGTTTCAAAGTACA.................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......TCCGTGTCGGCGTACTAACGA............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
................................................................................................CCAGCACAATCCTATATATAT...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0
................................................................................................................................CCTGGATATAGCTGGCGAGTC...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......CTCCGTGTCGGCGTACTGGCA................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................CTGTTTGCTGACTAGGACTGA 21 1 1 1.00 1 0 0 0 1 0 0
..............................GTTAGTAGTGTTGGTACTGTC........................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................................ACCCTCGTTTTTTTGTCTGTT................ 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTGTCTGTTTGCTGACTAGGAC... 22 0 1 1.00 1 0 1 0 0 0 0
.............................................ACTGTCACTCAAAAAAGATTA......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................GGATATAGCTGGCGAATCTGA................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................TCGAAAATTTGATCCTCGTTT........................... 21 1 1 1.00 1 1 0 0 0 0 0
.....ACTCCGTGTCGGCGTACTAAC................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................CCTGGATGTAGCTGGCGAATCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GTTTTTTTGTCTGTTTGCTGA.......... 21 0 1 1.00 1 1 0 0 0 0 0
..CGAACTCCGTGGCGGCGTAC..................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................CTTACACACGTTTCAAAGTAC..................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............TCGGCGTACTAACAACACTT.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................ATATAGCTGGCGAATCTGAAT................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................GGTAAACCAGCACAATCCTAT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................GCACGTCTCTTTTATTCTTAC..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.TCGGGCTCCGTGTCGGCGTA...................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0
.........CGTGTCGGCGTACTAACAAC.............................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................ACTCGGTAAACCAGCACGGTC................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TTCAAAGTACAGCTATCGAAA.......................................... 21 0 2 1.00 2 1 0 0 1 0 0
......................................................................................................................................TATAGCTGGCGAATCTGAATT................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................ACCTGGATATAGCTGGCGAA........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................AGCTGGCGAATCTGAGTTTAT............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
GTCGAACTCCGTGTCGGCGTA...................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................TCTGAATTTATGTCGCACGTC................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................GTCTGTTTGCTGACTAGGGCT.. 21 1 1 1.00 1 0 0 0 0 1 0
.......................................................................................CTCGGTAAACCAGCACGATCCTATATAT........................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................TCTGAATTTGTGACGCACGTC................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............TCGGCGTACTAACAACACT........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................TCTGAATTTATGACGCACGTC................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................CACCTGGATATAGCTGGCGGATCTG.................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..........................................GGTACTGTCACTCAAAAAAGA............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0
.......TCCGTGTCGGCTTACTAACAA............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..CGAACTCCGTGTCGGCGTACT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................CTGGCGAGTCTGAATTTATGA........................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................GTCTCTTTTATTCTTACACAC................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
GTCGGACTCCGTGTCGGCGTG...................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................CTGTTTGCTGGCTAGGACTAG 21 2 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................TGGCGAATCTGAGTTTATGAC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................AGCTGGCGAATCTGAATTTA.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TCTGTTTGCTGACTAGGACTA. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................CTGGCGAATCTGAATTTATGA........................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................................AGCTATCGAAAATTTGACCCT................................ 21 0 2 1.00 2 0 2 0 0 0 0
.............TCGGCGTACTAACGACACTTA......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................GGCGAATCTGAATTTATG............................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
........CCGTGTCGGCGTACTTACAA............................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................TGGCGAATCTGAATTTATGAC.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................AGCTGGCGGATCTGAATTTGT............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................ACGTCTCTTTTATTCTTACAC................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................CTGTCACTCAAAAAAGATTAA........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................CACGTTTCAAAGTACAGCTAT............................................... 21 0 4 0.75 3 3 0 0 0 0 0
.....................................................................................................................................................................................CACACGTTTCAAAGTACAGCT................................................. 21 0 6 0.67 4 3 1 0 0 0 0
................................................................................................................................................................................TCTTACACACGTTTCAAAGTA...................................................... 21 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................GTATTCCAGGACAATCCTATA........................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0
....................................................................................................................................................................................ACACACGTTTCAAAGTACAGC.................................................. 21 0 5 0.40 2 2 0 0 0 0 0
...........TGTCGGCGTACACAGAACACT........................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
......................................................................................................................................................................................ACACGTTTCAAAGTACAGCTA................................................ 21 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................................ACACGTTTCAAAGTACAGCTAT............................................... 22 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................................................................CACGTTTCAAAGTACAGCTA................................................ 20 0 4 0.25 1 1 0 0 0 0 0
........................................................................................................................................................................................ACGTTTCAAAGTACAGCTAT............................................... 20 0 6 0.17 1 1 0 0 0 0 0
........................................................................................................................................................................................ACGTTTCAGAGTACAGCTATC.............................................. 21 1 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................................................CACACGTTTCAAAGTACAGC.................................................. 20 0 6 0.17 1 1 0 0 0 0 0
..................................................CACCCAATAAAGATTAAATGA.................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0
........................................................................................................................................................................................ACGTTTCGAAGTACAGCTGTC.............................................. 21 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................................................................................................................CACGTTTCGGGGTACAGCTA................................................ 20 3 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................GTAGCTGGCGAATCTCAA.................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................CTAGCTGGCGAATCTAAA.................................................................................................. 18 2 20 0.05 1 0 0 0 0 1 0
..............................CGTAGTATAGTTGGTACTG.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13137:548351-548601 + dan_1423 CAGCT-TGAGGC-----ACAGCCGCATGATTGTTGTGA-ATCATCACAACCATGACAGTGAGTT---------------------------TT----------------------------------TTCTAATTTATT-----TTTACAAAAACC-------ATT--TGAGCCATTT--GGTC----GTG-TTAGGATATATATATAGGATTTAGTGGACCTATATCGA----------------------CCGCTTAGAC-TTA--AATACTGCGTGCAGAGAAAATAAGAATGTGTGCAAAGTTTCATGTCGATAGCTTTTAAACTGGGA----G---------CAAAAAAACAGAC----A----AA---------------------------CGACTGATCCTGATT
droBip1 scf7180000396032:49639-49921 + CAGCTATAAGAT-----ATAGTCAGCCGATCGTTATGA-AATTT------GGTAGATCGTA-ATCTGTA---------TAATGTTTCAGCT--TTCTATCTT--------------------------------------------CAAAAAGACA-------AAAGTTGGGTCATTTCCGATCGTTCAGTTATATGG--CAGCTATAGGATATAGTCGGCCGATCCCG------------------------------GAC-TTA--TATATTGCGTGCAAAGGAAAGAAGGGTGTGTGCAAAGTTTCAAGTCGATAGCTTTAAAACTG--------ACTAGTTCGCGTAGAAACAGAC----A--------GACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATC
droKik1 scf7180000302475:1139858-1140136 + CATT---GATGC-----TCATCTGCATCAGTGATGCTC-ATCTGCATCATCAAAACAGC-----------------------------------------------------AAAG-TTATAATTTT-----------T-----TTTCTAAAA------------------------ATATATCGAACATTTGTATGG--CAGCTATATGATATAATCGTCCGATCCGGC----------------------CCGTTCCGAC-ATA--TATAGCAGTGAGAATATATAGAAGACTATATGCAAAGTTTCATTCAGATAGCTTTAAAACTGAGG----GACTAGTTTGCGTAGAAACGGACAGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATGCTGATC
droFic1 scf7180000448751:15999-16263 + CATGATCTTGG-------------------------G---------------------------------------------------------------ATTAATAACAACAATG-TTATAGTTTTTTTTCCATTATTTAAATA--------------------------------TATTTTCGATCTTTCCTATGG--TAGCTATATAATAGAGTTATCCGATTTTGATAAAATTTAATCCGAAATAAAGTCTATCTGAC-TTA--TAAACTGCGTGCAATTACTATAAAACTTTTGGGAAAGTTTTAGCAAGATAGCTTTAAAACTGAGA----GACTGGTTTGCGTAGAAACAGAC----AAGAGGAC--------------AGATCGTCTTAGATCGTGATGGTGATT
droEle1 scf7180000491238:382445-382690 + GCGTG-TAT------------------------------------------------------------------------------------------GTTTAAAAACATTGAAG-CTATAATGATTTGCAGCTTATT-----TTTCGATAGTTCCTATGGCA-------------GCTATACGATTGTTTCTATGG--AAGCTATATGCTATAGTCGTCCGATCCTGC----------------------TCGTTCCGAC-TTA--TATACTACCTGCAATAGAAAGACAACTTTTGGGAAAGTTTCATGCAGATAGCTTTAAAACTGAGA----GACTAGTTTGTATAGAAACGGACGGACA--------------------------GACTCGCCTAGTGATGCTGATC
droRho1 scf7180000765517:338-626 + CAGAC-AGACGGACAGACG---GACATGG-----------CTATATCAACTCAGGAGGTGAT-CCT-GATCAAGAATA-------------TATTCTAACTT--------------------------------------------TACAAACACC-------AAAGTTATGGCATTTCCGATCAATCAGTTATATGG--CAGCTATAGGATATAGTCGGCCAATCCCGG----------------------CCGTTCCGAC-ATA--TATACTGCGTGCAAAGGAAAGAAGGGTGTGTGCAAAGTCTCAATTCGATAGCTTTAAAACTGAGA----GACTAGTTTGCGTAGAAACAGAC----A--------GACGGACATGGCTATATCAACTCAGGAGGTGATCCTGATC
droBia1 scf7180000297014:3474-3779 - CAGCTATGTGAT-----ATAGTTGTCCGATTTTGGTAA-AATTCAAAACCAATTAAAAAATATTATTTC---------CAAATTTAGAAGG--TTATATGTT--------------------------------------------AAAAAACACC-------AAA--TATACCATTT--GTTTTAAATTTCCTATGG--GAGCTATAATATATAGTTGTCCGATCC--------------------------GGTTCCGAC-TTT--TATACTACCTGCAATAGAAAGAAGACTTTTGGGAAAGTTTCAGCCCGATAGCTTTAAAAGTGAGA----GACTAGTTTGTGTAGAAAAGAACGGACAGACGAACAGACGGACATGGCTAGATCGACTGGTCTAGTGACGCTGATC
droTak1 scf7180000414019:41137-41418 + CAGTT-CCAGGGATTC-CA---GATATTGTTGTTGTCA-AAAAT------CAAAACGCCTA-CTTCCTA---------C---------------------------------AAAG-TTACAATGAA-----------T-----TTTCTTATA------------------------TTTGTTTGAATATTCCTATGG--GAGCCTTAAGATATAGTGGTCCGATCCGGA----------------------TCGCTCCGAC-ATA--TGTAGTACCTGCAATAGAAAGAAGACTTTCGGGAAAGTTTCATCGCGATAGCTTACAAACTGAGG----GCCTAGTTCGCATAGAAACGGAC----AGACGGACAGACGGACATGGCTAGATAGACTCGGCTATTGGTGCTGATC
droEug1 scf7180000409784:1006-1138 + CCTAAACTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------TCTGCGTACACATGTTTTAAGATGACTGTGAGACTTTTAAGTCGCTAGCTCTTAAACTGAGC----TCGCAAACGGTATTGAAACA----------------GACGGAGATGGCTATATCGGCTTCCCTATTGGTCCTGATC
dm3 chrX:15832318-15832474 + TACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGAAATAGTCGTCTGATCTCGG----------------------CTGTTTCGAC-CTA--TATACTACCTGCAATAGAAAGAAGACTATATTTAAAGTTTCAACCAGTTGGCTTCAAAATGGAGT----GACTGGTTTGTTTAACAACGGACAGACAGACAAACATACGGACATGCTT---------------------------
droSim2 x:15000859-15001015 + TACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGAAATAGTCGTCTGATCTCGG----------------------CTGTTTCGAC-CTA--TATACTACCTGCAATAGAAAGAAGACTATATTTAAAGTTTCAACCAGGTGGCTTCAAAATGGAGT----GACTGGTTTGCTTAACAACGGACAGACAGACAAACATACGGACATGCTT---------------------------
droSec2 scaffold_53:119015-119070 + CAGCC-TGAGGC-----ACAGTCGCATGATCGTTGTCA-ATCACAAAAACCACGACAGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droYak3 X:10022899-10023051 + TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAATAGTCGTCTGTTCTCGG----------------------CTGTTTCGAC-CTA--TATACTACCTGCAATAGAAAGAAGACTATGTTTAAAGTTTCAACCAGGTGGCTTCAAAATGGAGT----GACTGGTTTGCTTAACGACGGACAGACAGACAAACATACGGACATGCTT---------------------------
droEre2 scaffold_4929:20224446-20224588 + ATGTA-TATGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATACAGTGGTCTGATCTGGC----------------------TCCATCCGAC-TTACATATACTACCTGCAATATAAAG---ACTTTAAAGAAGATTTTATG-----------------CAGA----AACTAGTTTGTGTAGAAACGGACGA--------------------------ATCGACTCTACGGTTGATACTGATC
dp5 XL_group1e:9946166-9946225 - TAGTC-TGAGAC-----ACAGTCGCATGATAGTTGTAA-ATCACAAGAACCATGACAGTACGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---------------------------
droPer2 scaffold_22:288258-288317 + TAGTC-TGAGAC-----ACAGTCGCATGATAGTTGTGA-ATCACAAGAACCATGACAGTACGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---------------------------
droWil2 scf2_1100000002440:1407-1687 + CAATT-TGACTC-----TCTATTTTACAATTATTTTACAATCACATAT---------GTAAATT---------------------------TC-------------------ATAGCATACCCTGAT-----------T-----TTTATGAAA------------------------ATGTTTCTTCTAGTTCTTCGT--GAGCTATATGATATAGTGGTCCGATCCTGA----------------------TGGTTTTCATACTT--TATTTTTCCCGGGTAATAAAAAACAC-GGAAAAAAAATTTCAGCCCGATAGCTGTTAAGACGGCT----GAGTAAAACGCATTCGCACAGACGGACGGACGGACAGACGGACATGGCTATATCAACTCAGCTTCTCATGCTGATC
droVir3 scaffold_12509:775-972 + TTTTT-TCATAC-----AAAAAC---------------------------------------------------------------------------------------------------------------TTAAT-----T--------------------------------TTCGACCGATCGTTCTTATGG--CAGCTATATAATATAGTGGTCCGATCTAGC----------------------TGGTTTTCAC-ATA--TGTGCTGCGTGCAACAGAAAGAGGGACTTCTGCAAAATTTTGTTAAGATAGCTTTAAAACTGAGA----GACTAGTTCGCATAGAAACAGAC----A--------------------------GACTCGTCTGTTGATGCTGATC
droMoj3 scaffold_6482:467456-467688 + CTGAT-TTACTT-----TC------------GTGAATG-AGTATAAAAACCAAGTCGATTAT-TCTCGATAAAAAATT-------------TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAATAAAGC------------------------------------------------AA-ACT--CGTACTGCCTATGGTATACACGAGTATGCATGCCAAATTTCAGCTCTCTAGCTCTTATATCTTCTGAGAGCCTTTTGCTCATACAGACGGAC----GGTCGGACGGACGGACAGGGCTATATCGACTTAGCTCGTCGTCCTGATC
droGri2 scaffold_15110:2253820-2253952 + TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAATAGTGATGCGATACTGT----------------------CGACTGCCTT-ATA--TGTACTGGCAGCAGCAATTATACGAATGTATGCCAGGTTTCATCTAGATAGCCTTCAAATTGGCT----GAACGACTCGC-----------------------------------------------TGGCTAATGATGCTGATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAGCT-TGAGGC-----ACAGCCGCATGATTGTTGTGA-ATCATCACAACCATGACAGTGAGTT---------------------------TT----------------------------------TTCTAATTTATT-----TTTACAAAAACC-------ATT--TGAGCCATTT--GGTC----GTG-TTAGGATATATATATAGGATTTAGTGGACCTATATCGA----------------------CCGCTTAGAC-TTA--AATACTGCGTGCAGAGAAAATAAGAATGTGTGCAAAGTTTCATGTCGATAGCTTTTAAACTGGGA----G---------CAAAAAAACAGAC----A----AA---------------------------CGACTGATCCTGATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................AATGTGTGCAAAGTTTCATGT....................................................................................................2117.007000007
..........................................................................................................................................................CC-------ATT--TGAGCCATTT--GGTC----GT...............................................................................................................................................................................................................................2114.004300010
........................................................................................................................................................................................................................................................................................AGAGAAAATAAGAATGTGTGC................................................................................................................2113.003000012
............................................................................................................................................................................CCATTT--GGTC----GTG-TTAGGAT......................................................................................................................................................................................................................2012.002100010
...........................................................................................................................................................................................................................................................................................................................................................CAAAAAAACAGAC----A----AA---------------------------CGACT..........2112.002100001
.......GAGGC-----ACAGCCGCATGATTGT............................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
.........................................................................................................................................................................................................ATATATAGGATTTAGTGGACC...............................................................................................................................................................................................2112.002000002
......................................................................................................................................................................................................TATATATATAGGATTTAGTGG..................................................................................................................................................................................................2112.002000011
.............................................................................................................................................................................CATTT--GGTC----GTG-TTAGGATATA...................................................................................................................................................................................................................2212.002200000
.................................................................................................................................................................................................................................................................TAGAC-TTA--AATACTGCGTGCA....................................................................................................................................2112.002200000
...........................................................................................................................................................................GCCATTT--GGTC----GTG-TTAGGA.......................................................................................................................................................................................................................2012.002000002
........................................................................................................................................................................................................................TGGACCTATATCGA----------------------CCGCTTA..........................................................................................................................................................2112.002100001
...................................................................................................................................................ACAAAAACC-------ATT--TGAGCCATT............................................................................................................................................................................................................................................2112.002100010
.....................................................................................................................................................................................................................................................................C-TTA--AATACTGCGTGCAGAG.................................................................................................................................2012.002000002
.......................................................................................................................................................................................................................................................................................................GTGTGCAAAGTTTCATGTCGA.................................................................................................2161.338000026
.....................................................................................................................................................................................................................TAGTGGACCTATATCGA----------------------CCGC.............................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................AACAGAC----A----AA---------------------------CGACTGATCCT....2111.001100000
...........................................................................................................................................................................................................................ACCTATATCGA----------------------CCGCTTAGAC-......................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................CAGAGAAAATAAGAATGTGTGC................................................................................................................2211.001010000
..............................................................................................................................................................................................G-TTAGGATATATATATAGGAT.........................................................................................................................................................................................................2111.001000001
........AGGC-----ACAGCCGCATGATTGTT...........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................GA----------------------CCGCTTAGAC-TTA--AATACTGCGT.......................................................................................................................................2511.001000001
...........................................................................................................................................................................................................................................................................................................................ATAGCTTTTAAACTGGGA----G---------CA................................................................2111.001000100
...................................................................................................................................................................................................................................................................................................................................................................CAGAC----A----AA---------------------------CGACTGATCCTGA..2111.001100000
...................................................................................................................................................................ATT--TGAGCCATTT--GGTC----GTG-T............................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................ACAGAC----A----AA---------------------------CGACTGATCCTG...2111.001100000
...........................................................................................................................................................C-------ATT--TGAGCCATTT--GGTC----GTT-.............................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................................GCCATTT--GGTC----GTG-TTAGG........................................................................................................................................................................................................................1911.001000001
..............................................................................................................................................................................................................................TATATCGA----------------------CCGCTTAGAC-TTA--.................................................................................................................................................2111.001000010
...........................GATTGTTGTGA-ATCATCACAA............................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................GAGCCATTT--GGTC----GTG-TTAGG........................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................TAGGATTTAGTGGACCTATAT..........................................................................................................................................................................................2111.001100000
.....................................A-ATCATCACAACCATGACAG...................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................TTAGTGGACCTATATCGA----------------------CCG..............................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................CTATATCGA----------------------CCGCTTAGAC-TT....................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................GTGGACCTATATCGA----------------------CCGCTT...........................................................................................................................................................2111.001100000
..........................................................................................................................................................................AGCCATTT--GGTC----GTG-TTAGG........................................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................................................................CTTAGAC-TTA--AATACTGCGT.......................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................GAC----A----AA---------------------------CGACTGATCCTGATT2111.001100000
..........GC-----ACAGCCGCATGATTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................CCATTT--GGTC----GTG-TTAGGATA.....................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................TT--GGTC----GTG-TTAGGATATATA.................................................................................................................................................................................................................2111.001000001
................................................................................................................................................TTTACAAAAACC-------ATT--TGAGCC...............................................................................................................................................................................................................................................2111.001010000
.....................................A-ATCATCACAACCATGACAGT..................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................CAGAC----A----AA---------------------------CGACTGATCCTG...2011.001100000
..................................................................................................................................................TACAAAAACC-------ATT--TGAGCCAT.............................................................................................................................................................................................................................................2111.001000010
.....................................................................................................................................................................T--TGAGCCATTT--GGTC----GTG-TTA..........................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................ATTT--GGTC----GTG-TTAGGATATA...................................................................................................................................................................................................................2111.001100000
..................................................CATGACAGTGAGTT---------------------------TT----------------------------------TTCTA.........................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................TAGCTTTTAAACTGGGA----G---------C.................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................CAGAGAAAATAAGAATGTGTG.................................................................................................................2111.001000100
..........................................................................................................................................................................AGCCATTT--GGTC----GTG-TTAGGA.......................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................CAAAGTTTCATGTCGATAGCT............................................................................................2160.674100003
.....................................................................................................................................................................................................................................................................................................ATGTGTGCAAAGTTTCATGTC...................................................................................................2150.603000003
.........................................................................................................................................................................................................................................................................................................................CGATAGCTTTTAAACTGGGA----G---------..................................................................2120.501000010
.........................................................................................................................................................................................................................................................................................................GTGCAAAGTTTCATGTCGATAGC.............................................................................................2340.502000002
.............................................................................................................................................................................................................................................................................................AAATAAGAATGTGTGCAAAGT...........................................................................................................2140.251000010
.........................................................................................................................................................................................................................................................................................................GTGCAAAGTTTCATGTCGATA...............................................................................................2140.251000001
.............................................................................................................................................................................................................................................................................................................AAAGTTTCATGTCGATAGCTT...........................................................................................2140.251100000
.........................................................................................................................................................................................................................................................................................................GTGCAAAGTTTCATGTCGATG...............................................................................................2180.131100000
droBip1
CAGCTATAAGAT-----ATAGTCAGCCGATCGTTATGA-AATTT------GGTAGATCGTA-ATCTGTA---------TAATGTTTCAGCT--TTCTATCTT--------------------------------------------CAAAAAGACA-------AAAGTTGGGTCATTTCCGATCGTTCAGTTATATGG--CAGCTATAGGATATAGTCGGCCGATCCCG------------------------------GAC-TTA--TATATTGCGTGCAAAGGAAAGAAGGGTGTGTGCAAAGTTTCAAGTCGATAGCTTTAAAACTG--------ACTAGTTCGCGTAGAAACAGAC----A--------GACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCSizeHit CountTotal NormTotal
No Reads
droKik1
CATT---GATGC-----TCATCTGCATCAGTGATGCTC-ATCTGCATCATCAAAACAGC-----------------------------------------------------AAAG-TTATAATTTT-----------T-----TTTCTAAAA------------------------ATATATCGAACATTTGTATGG--CAGCTATATGATATAATCGTCCGATCCGGC----------------------CCGTTCCGAC-ATA--TATAGCAGTGAGAATATATAGAAGACTATATGCAAAGTTTCATTCAGATAGCTTTAAAACTGAGG----GACTAGTTTGCGTAGAAACGGACAGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATGCTGATCSizeHit CountTotal NormTotal
No Reads
droFic1
CATGATCTTGG-------------------------G---------------------------------------------------------------ATTAATAACAACAATG-TTATAGTTTTTTTTCCATTATTTAAATA--------------------------------TATTTTCGATCTTTCCTATGG--TAGCTATATAATAGAGTTATCCGATTTTGATAAAATTTAATCCGAAATAAAGTCTATCTGAC-TTA--TAAACTGCGTGCAATTACTATAAAACTTTTGGGAAAGTTTTAGCAAGATAGCTTTAAAACTGAGA----GACTGGTTTGCGTAGAAACAGAC----AAGAGGAC--------------AGATCGTCTTAGATCGTGATGGTGATTSizeHit CountTotal NormTotal
No Reads
droEle1
GCGTG-TAT------------------------------------------------------------------------------------------GTTTAAAAACATTGAAG-CTATAATGATTTGCAGCTTATT-----TTTCGATAGTTCCTATGGCA-------------GCTATACGATTGTTTCTATGG--AAGCTATATGCTATAGTCGTCCGATCCTGC----------------------TCGTTCCGAC-TTA--TATACTACCTGCAATAGAAAGACAACTTTTGGGAAAGTTTCATGCAGATAGCTTTAAAACTGAGA----GACTAGTTTGTATAGAAACGGACGGACA--------------------------GACTCGCCTAGTGATGCTGATCSizeHit CountTotal NormTotal
No Reads
droRho1
CAGAC-AGACGGACAGACG---GACATGG-----------CTATATCAACTCAGGAGGTGAT-CCT-GATCAAGAATA-------------TATTCTAACTT--------------------------------------------TACAAACACC-------AAAGTTATGGCATTTCCGATCAATCAGTTATATGG--CAGCTATAGGATATAGTCGGCCAATCCCGG----------------------CCGTTCCGAC-ATA--TATACTGCGTGCAAAGGAAAGAAGGGTGTGTGCAAAGTCTCAATTCGATAGCTTTAAAACTGAGA----GACTAGTTTGCGTAGAAACAGAC----A--------GACGGACATGGCTATATCAACTCAGGAGGTGATCCTGATCSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCTATGTGAT-----ATAGTTGTCCGATTTTGGTAA-AATTCAAAACCAATTAAAAAATATTATTTC---------CAAATTTAGAAGG--TTATATGTT--------------------------------------------AAAAAACACC-------AAA--TATACCATTT--GTTTTAAATTTCCTATGG--GAGCTATAATATATAGTTGTCCGATCC--------------------------GGTTCCGAC-TTT--TATACTACCTGCAATAGAAAGAAGACTTTTGGGAAAGTTTCAGCCCGATAGCTTTAAAAGTGAGA----GACTAGTTTGTGTAGAAAAGAACGGACAGACGAACAGACGGACATGGCTAGATCGACTGGTCTAGTGACGCTGATCSizeHit CountTotal NormTotal
No Reads
droTak1
CAGTT-CCAGGGATTC-CA---GATATTGTTGTTGTCA-AAAAT------CAAAACGCCTA-CTTCCTA---------C---------------------------------AAAG-TTACAATGAA-----------T-----TTTCTTATA------------------------TTTGTTTGAATATTCCTATGG--GAGCCTTAAGATATAGTGGTCCGATCCGGA----------------------TCGCTCCGAC-ATA--TGTAGTACCTGCAATAGAAAGAAGACTTTCGGGAAAGTTTCATCGCGATAGCTTACAAACTGAGG----GCCTAGTTCGCATAGAAACGGAC----AGACGGACAGACGGACATGGCTAGATAGACTCGGCTATTGGTGCTGATCSizeHit CountTotal NormTotal
No Reads
droEug1
CCTAAACTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------TCTGCGTACACATGTTTTAAGATGACTGTGAGACTTTTAAGTCGCTAGCTCTTAAACTGAGC----TCGCAAACGGTATTGAAACA----------------GACGGAGATGGCTATATCGGCTTCCCTATTGGTCCTGATCSizeHit CountTotal NormTotal
No Reads
dm3
TACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGAAATAGTCGTCTGATCTCGG----------------------CTGTTTCGAC-CTA--TATACTACCTGCAATAGAAAGAAGACTATATTTAAAGTTTCAACCAGTTGGCTTCAAAATGGAGT----GACTGGTTTGTTTAACAACGGACAGACAGACAAACATACGGACATGCTT---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................AAAGAAGACTATATTTAAAGT...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GTTTCGAC-CTA--TATACTACCT.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................AGTCGTCTGATCTCGG----------------------CTGT.............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................ACCTGCAATAGAAAGAAGACT......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................................................TGAAATAGTCGTCTGATCTCGG----------------------.................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACCAGTTGGCTTCAAAATGGAGT----GA..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGAAATAGTCGTCTGA.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droSim2
TACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGAAATAGTCGTCTGATCTCGG----------------------CTGTTTCGAC-CTA--TATACTACCTGCAATAGAAAGAAGACTATATTTAAAGTTTCAACCAGGTGGCTTCAAAATGGAGT----GACTGGTTTGCTTAACAACGGACAGACAGACAAACATACGGACATGCTT---------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................TCGTCTGATCTCGG----------------------A................................................................................................................................................................1571.29900000015201000000
........................................................................................................................................................................................................................TCGTCTGATCTCGG----------------------AA...............................................................................................................................................................16200.05100000000100000000
droSec2
CAGCC-TGAGGC-----ACAGTCGCATGATCGTTGTCA-ATCACAAAAACCACGACAGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAATAGTCGTCTGTTCTCGG----------------------CTGTTTCGAC-CTA--TATACTACCTGCAATAGAAAGAAGACTATGTTTAAAGTTTCAACCAGGTGGCTTCAAAATGGAGT----GACTGGTTTGCTTAACGACGGACAGACAGACAAACATACGGACATGCTT---------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................CAAAATGGAGT----GACTGGTTTG..................................................................2111.00101000000000
droEre2
ATGTA-TATGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATACAGTGGTCTGATCTGGC----------------------TCCATCCGAC-TTACATATACTACCTGCAATATAAAG---ACTTTAAAGAAGATTTTATG-----------------CAGA----AACTAGTTTGTGTAGAAACGGACGA--------------------------ATCGACTCTACGGTTGATACTGATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................TAGTTTGTGTAGAAACGGAT.....................................................2030.3310000100
dp5
TAGTC-TGAGAC-----ACAGTCGCATGATAGTTGTAA-ATCACAAGAACCATGACAGTACGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAGTC-TGAGAC-----ACAGTCGCATGATAGTTGTGA-ATCACAAGAACCATGACAGTACGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAATT-TGACTC-----TCTATTTTACAATTATTTTACAATCACATAT---------GTAAATT---------------------------TC-------------------ATAGCATACCCTGAT-----------T-----TTTATGAAA------------------------ATGTTTCTTCTAGTTCTTCGT--GAGCTATATGATATAGTGGTCCGATCCTGA----------------------TGGTTTTCATACTT--TATTTTTCCCGGGTAATAAAAAACAC-GGAAAAAAAATTTCAGCCCGATAGCTGTTAAGACGGCT----GAGTAAAACGCATTCGCACAGACGGACGGACGGACAGACGGACATGGCTATATCAACTCAGCTTCTCATGCTGATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................TATGATATAGTGGTCCGATC...........................................................................................................................................................................................20200.15300030
.....................................................................................................................................................................................................................................................................................................................................................................................GACGGACATGGCTATATC......................18200.15330000
...................................................................................................................................................................................................................................................................................................................................TAAGACGGCT----GAGTAAAACGCATTCGC...........................................................27200.15300030
.................................................................................................................................................................................................................................................................................................................................................................................................TATATCAACTCAGCTTCTCATGCTG...25200.15303000
..............................................................................................................................................................................................................TATGATATAGTGGTCCGATCCTGA----------------------TGG..............................................................................................................................................................27200.15300030
..............................................................................................................................................................................................................................................................................................................................................................TCGCACAGACGGACGGACGGACAGACG....................................27200.10200020
....................................................................................................................................................................................................................................................................................................................................................TAAAACGCATTCGCACAGACGGACGGA..............................................27200.10200020
..................................................................................................................................................................................................................ATATAGTGGTCCGATCCTGA----------------------TGGTT............................................................................................................................................................25200.10200020
...............................................................................................................................................................................................................................................................................................................................................................CGCACAGACGGACGGACGGACA........................................22200.05101000
.........................................................................................................................................................................................................................................................................................................................................................CGCATTCGCACAGACGGACGGACGGA..........................................26200.05100010
..................................................................................................................................................................................................................................................................................................................................................AGTAAAACGCATTCGCACAGACGGA..................................................25200.05101000
...........................................................................................................................................................................................................................................................................................................................................CT----GAGTAAAACGCATTCGCACAGACGGA..................................................28200.05100100
..............................................................................................................................................................................................................................................................................................................................................................TCGCACAGACGGACGGACGGACAGA......................................25200.05100010
............................................................................................................................................................................................................................CCGATCCTGA----------------------TGGTTTTCATACT....................................................................................................................................................23200.05101000
.........................................................................................................................................................................................................AGCTATATGATATAGTGGTCCGATCCT.........................................................................................................................................................................................27200.05100010
..................................................................................................................................................................................TGTTTCTTCTAGTTCTTCGT--GAGC.................................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................................................................................................................................................................................TCGCACAGACGGACGGACGGACAGAC.....................................26200.05100010
..................................................................................................................................................................................................................ATATAGTGGTCCGATCCT.........................................................................................................................................................................................18200.05100010
..................CTATTTTACAATTATTTTACAATCAC.................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
........................................................................................................................................................................................................................................................................................................................................CGGCT----GAGTAAAACGCATTCGCACAGA......................................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................TATATCAACTCAGCTTCTCATGC.....23200.05101000
......................................................................................................................................................................................................................................................................................................................................................AAACGCATTCGCACAGACGGAC.................................................22200.05101000
.................................................................................................................................................................................................................GATATAGTGGTCCGATCCTGA----------------------.................................................................................................................................................................21200.05100010
....................................................................................................................................................................................................................................................................................................................................................TAAAACGCATTCGCACAGACGG...................................................22200.05101000
...........................................................................................................................................................................................................................................................................................................AAAAAATTTCAGCCCGATAGC.............................................................................................21200.05101000
..............................TATTTTACAATCACATAT---------GTAAAT..............................................................................................................................................................................................................................................................................................................................................................24200.05101000
.................................................................................................................................................................................................TTCGT--GAGCTATATGATATAGTGGTC................................................................................................................................................................................................26200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACATGGCTATATCAACTC.................25200.05101000
........................................................................................................................................................................................................................................................................................................................................................ACGCATTCGCACAGACGGACGGA..............................................23200.05100010
................................................................................................................................................................................................................................TCCTGA----------------------TGGTTTTCATACTT--TATTTT...........................................................................................................................................26200.05101000
.............................................................................................................................................................................................................................................................................................................................................................TTCGCACAGACGGACGGACGGACA........................................24200.05100010
.....................................................................................................................................................................................................................................................................................................................................................AAAACGCATTCGCACAGACGGACGGACG............................................28200.05101000
.....................................................................................................................................................................................................T--GAGCTATATGATATAGTGGTC................................................................................................................................................................................................22200.05101000
....................................................................................................................................................................................................................................................................................................................................................TAAAACGCATTCGCACAGACGGAC.................................................24200.05101000
....................................................................................................................................................................................................................................................................................................................................................TAAAACGCATTCGCACAGACGGACGG...............................................26200.05101000
............................................................................................................................................................................................................................................................................................................................................................ATTCGCACAGACGGACGGACG............................................21200.05101000
droVir3
TTTTT-TCATAC-----AAAAAC---------------------------------------------------------------------------------------------------------------TTAAT-----T--------------------------------TTCGACCGATCGTTCTTATGG--CAGCTATATAATATAGTGGTCCGATCTAGC----------------------TGGTTTTCAC-ATA--TGTGCTGCGTGCAACAGAAAGAGGGACTTCTGCAAAATTTTGTTAAGATAGCTTTAAAACTGAGA----GACTAGTTCGCATAGAAACAGAC----A--------------------------GACTCGTCTGTTGATGCTGATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................TTAAGATAGCTTTAAAACTGAGA----GAC.........................................................................26201.4028000170400010400000000000000063200000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TCGCATAGAAACAGAC----A--------------------------GACTCGTCTT............2711.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TCGCATAGAAACAGAC----A--------------------------GACTCGT...............2411.001000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GACTAGTTCGCATAGAAACAGAC----A--------------------------GACT..................2820.501000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTAAGATAGCTTTAAAACTGAGA----GACT........................................................................27200.459001010000100000000000000010000100003010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTAAGATAGCTTTAAAACTGAGA----GA..........................................................................25200.459000000000000000000000000010410010002000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTCTG.................................................................................................................23200.357000000000000000000001000000000000000005100000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTAAGATAGCTTTAAAACTGAGA----G...........................................................................24200.306000000100000000000000000100001020000100000000000000000000000000
.................................................................................................................................................................................................................................................................................TGCGTGCAACAGAAAGAGGGACTTC...................................................................................................................25200.255000002020000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTCTGCAAA.............................................................................................................27200.255000000000000000000000000000020001001000100000000000000000000000
...........................................................................................................................................................................................................................TCCGATCTAGC----------------------TGGTTTTCAC-ATA--TG...............................................................................................................................................2640.251000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTGCGTGCAACAGAAAGAGGGACTTC...................................................................................................................26200.255000000002000200000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GACTAGTTCGCATAGAAACAGAC----A--------------------------GA....................26200.204000000000000000000000000000000001000300000000000000000000000000
..................................................................................................................................................................................................................................TAGC----------------------TGGTTTTCAC-ATA--TGTGCTGC.........................................................................................................................................2560.171000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TGAGA----GACTAGTTCGCATAGAAACAG.......................................................26200.153000000000000000000000000000002100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTCTGC................................................................................................................24200.153000000300000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATAGCTTTAAAACTGAGA----GACTAG......................................................................24200.153000000000000000000000000000200010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GATAGCTTTAAAACTGAGA----GACTAGT.....................................................................26200.153000000000010000000000000000200000000000000000000000000000000000
............................................................................................................................................................................................................................................................TGGTTTTCAC-ATA--TGTGCTGCGTGC.....................................................................................................................................25200.153000000000000000000000000000000000000300000000000000000000000000
...................................................................................................................................................................................................................TATAGTGGTCCGATCTAGC----------------------TGGTTTT..........................................................................................................................................................2690.111000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTAAGATAGCTTTAAAACTGAGA----............................................................................23200.102000000000000000000000000000000002000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTCTGC................................................................................................................23200.102000001000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTCTGCAA..............................................................................................................26200.102000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CGTGCAACAGAAAGAGGGACT.....................................................................................................................21200.102100000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTCAC-ATA--TGTGCTGCGTGCAACAGA...............................................................................................................................26200.102000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................A----GACTAGTTCGCATAGAAACAGAC----A--------------------------GA....................27200.102000000000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AACTGAGA----GACTAGTTCGCATAGAA...........................................................25200.102000000002000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTCT..................................................................................................................22200.102000000000000000000000000000100000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................GCGTGCAACAGAAAGAGGGACTTC...................................................................................................................24200.102000000001000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TGCGTGCAACAGAAAGAGGGACTTCT..................................................................................................................26200.102000000000000000000000000000000010100000000000000000000000000000
........................................................................................................................................................................................................................................................................................AACAGAAAGAGGGACTTCTGCAAAATT..........................................................................................................27130.081000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTCTGCAAAA............................................................................................................27140.071000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTCTGCAAAAT...........................................................................................................28140.071000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................AGTGGTCCGATCTAGC----------------------TGGTT............................................................................................................................................................21150.071000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................TATAGTGGTCCGATCTAGC----------------------TGG..............................................................................................................................................................22160.061000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................GAAAGAGGGACTTCTGCAAAATT..........................................................................................................23160.061000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................ATATAGTGGTCCGATCTAGC----------------------.................................................................................................................................................................20190.051000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTT....................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAAACTGAGA----GACTAGTTCGCATAGA............................................................27200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TGGTTTTCAC-ATA--TGTGCTGCGTGCAAC..................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................GC----------------------TGGTTTTCAC-ATA--TGTGCTGCGT.......................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GCTTTAAAACTGAGA----GACTAG......................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TAGCTTTAAAACTGAGA----GACTAGT.....................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................TA--TGTGCTGCGTGCAACAGAAAGAGG.........................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CTTTAAAACTGAGA----GACTAGTTCGCA................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CAC-ATA--TGTGCTGCGTGCAACAGAAA.............................................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AAAACTGAGA----GACTAGTTCGCATAGAAA..........................................................28200.051000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CGTGCAACAGAAAGAGGGACTTCTGC................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTGCGTGCAACAGAAAGAGGGACTTCT..................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TTAAAACTGAGA----GACTAGTTCGCA................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACT.....................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTCAC-ATA--TGTGCTGCGTGCAACAGAA..............................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
......................C---------------------------------------------------------------------------------------------------------------TTAAT-----T--------------------------------TTCGACCGATC.................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................CGTGCAACAGAAAGAGGGACTTCT..................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACT.....................................................................................................................18200.051000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AACAGAAAGAGGGACTTCTG.................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GAGA----GACTAGTTCGCATAGAAACAG.......................................................25200.051000000000000000000000000001000000000000000000000000000000000000
..........AC-----AAAAAC---------------------------------------------------------------------------------------------------------------TTAAT-----T--------------------------------TTCGACCGATCGT...............................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTGCGTGCAACAGAAAGAGGGACT.....................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AGATAGCTTTAAAACTGAGA----GACTAG......................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTCT..................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTCTGCAA..............................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TGAGA----GACTAGTTCGCATAGAAA..........................................................23200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTC...................................................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................CTGCGTGCAACAGAAAGAGGG........................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ACTGAGA----GACTAGTTCGCATAGAA...........................................................24200.051000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GCGTGCAACAGAAAGAGGGA.......................................................................................................................20200.051000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAAGATAGCTTTAAAACTGAGA----GAC.........................................................................25200.051000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTAAGATAGCTTTAAAACTG...................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAAGATAGCTTTAAAACTGAGA----GACTA.......................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTT....................................................................................................................19200.051000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................C----------------------TGGTTTTCAC-ATA--TGTGCTGCGTGC.....................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTC...................................................................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AAGATAGCTTTAAAACTGAGA----GACTAG......................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTTAAAACTGAGA----GACTAGTTCGCA................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TGCGTGCAACAGAAAGAGGGACTT....................................................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................A----GACTAGTTCGCATAGAAACAGAC----.................................................24200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATAGCTTTAAAACTGAGA----GACTA.......................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATAGCTTTAAAACTGAGA----GACT........................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACAGAAAGAGGGACTTCTGCA...............................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATAGCTTTAAAACTGAGA----GACTAGT.....................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGAAAGAGGGACTTCTG.................................................................................................................22200.051000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTGCAACAGAAAGAGGGACTTCTGC................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................CGTGCAACAGAAAGAGGGAC......................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TAAGATAGCTTTAAAACTGAG.................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
CTGAT-TTACTT-----TC------------GTGAATG-AGTATAAAAACCAAGTCGATTAT-TCTCGATAAAAAATT-------------TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAATAAAGC------------------------------------------------AA-ACT--CGTACTGCCTATGGTATACACGAGTATGCATGCCAAATTTCAGCTCTCTAGCTCTTATATCTTCTGAGAGCCTTTTGCTCATACAGACGGAC----GGTCGGACGGACGGACAGGGCTATATCGACTTAGCTCGTCGTCCTGATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................TTATATCTTCTGAGAGCCTTTTGCTCA................................................................2713.003200010
..................................................................................................................................................................................................................................................................................................................................TTATATCTTCTGAGAGCCTTTTGC...................................................................2412.002000020
................................................................................................................................................................................................................................................................................................................................TCTTATATCTTCTGAGAGCCTTTTGC...................................................................2612.002100010
...................................................................................................................................................................................................................................................................................................................................TATATCTTCTGAGAGCCTTTTGC...................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................TACAGACGGAC----GGTCGGACGGACGGAC.................................2711.001000010
.................................................................................................................................................................................................................................................................................................................................CTTATATCTTCTGAGAGCCTTTTGC...................................................................2511.001000010
...........................................................................................TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAATAAAGC------------------------------------------------.........................................................................................................................................................2911.001100000
...........................................TAAAAACCAAGTCGATTAT-TCTCGAC.......................................................................................................................................................................................................................................................................................................................................................2611.001000010
.........................................TATAAAAACCAAGTCGATTAT-..............................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................CTCATACAGACGGAC----GGTCGGACGGT......................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................TACAGACGGAC----GGTCGGACGGA......................................2211.001100000
............................................................................................ATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAATAAAG..........................................................................................................................................................................................................2711.001100000
...........................................TAAAAACCAAGTCGATTAT-TCTCGATA......................................................................................................................................................................................................................................................................................................................................................2711.001000010
..................................................................................................................................................................................................................................................................................................................................TTATATCTTCTGAGAGCCTTTTGCTC.................................................................2611.001100000
...........................................................................................TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAAT..............................................................................................................................................................................................................2440.753200010
...........................................................................................TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAATA.............................................................................................................................................................................................................2540.753300000
........................................................................................................................................................................................................GAAAAATAAAGC------------------------------------------------AA-ACT--CGTACTGCCTAT.....................................................................................................................................2920.501100000
............................................................................................................................................................................................................................................................................................TACACGAGTATGCATGCCAAATTTCA.......................................................................................................26200.50101000000
...........................................................................................TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAAATAA............................................................................................................................................................................................................2630.331100000
................................................................................................................................................................................................................................................................................................................................................................................................CTATATCGACTTAGCTCGTCGTCCT....2530.331000010
................................................................................................................................................................................................................................................................................................................................................................................................CTATATCGACTTAGCTCGTCGTCCTGA..2730.331100000
................................................................................................................................................................................................................................................................................................................................................................................................CTATATCGACTTAGCTCGTCGTCC.....2430.331100000
........................................................................................................................................................................................................................................................................................................................................................................................GGACAGGGCTATATCGACTTAGCTC............25100.202100010
...........................................................................................TATC----------------------------------------------------------------------------------------GGATGAGTTAT--CG--GAAAA................................................................................................................................................................................................................2250.201100000
.................................................................................................................................................................................................T--CG--GAAAAATAAAGC------------------------------------------------AA-ACT--CGTAC............................................................................................................................................2560.171100000
...............................................................................................................................................................................................................................................................................ACTGCCTATGGTATACACGA..........................................................................................................................20200.153300000
.......................................................................................................................................................................................................................................................................ACT--CGTACTGCCTATGGTATACACGA..........................................................................................................................26200.102200000
..............................................................................................................................................................................................................TAAAGC------------------------------------------------AA-ACT--CGTACTGCCTATGG...................................................................................................................................25200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................GACGGACAGGGCTATATCGACTTAGC..............26110.091000010
...................................................................................................................................................................................................................C------------------------------------------------AA-ACT--CGTACTGCCTATGGTATAC..............................................................................................................................25200.051100000
............................................................................................................................................................................................................................................................................................TACACGAGTATGCATGCCAAATTTCAG......................................................................................................27200.051010000
..................................................................................................................................................................................................................................................................................GCCTATGGTATACACGAGTATG.....................................................................................................................22200.051100000
..........................................................................................................................................................................................................AAAATAAAGC------------------------------------------------AA-ACT--CGTAC............................................................................................................................................20200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................ACGGACGGACAGGGCTATATCGAC...................24200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................GGACGGACAGGGCTATATCGA....................21200.051000001
................................................................................................................................................................................................................................................................................................CGAGTATGCATGCCAAATTTCA.......................................................................................................22200.051100000
............................................................................................................................................................................................................................................................................CGTACTGCCTATGGTATACACGAG.........................................................................................................................24200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................GACGGACAGGGCTATATCGAC...................21200.051100000
............................................................................................................................................................................................................................................................................................TACACGAGTATGCATGCCAAATTTCAC......................................................................................................27200.051100000
droGri2
TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAATAGTGATGCGATACTGT----------------------CGACTGCCTT-ATA--TGTACTGGCAGCAGCAATTATACGAATGTATGCCAGGTTTCATCTAGATAGCCTTCAAATTGGCT----GAACGACTCGC-----------------------------------------------TGGCTAATGATGCTGATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:32 AM