ID:

dan_1420

 Coordinate:

scaffold_13137:249916-250066 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.3 -7.2 -7.1 -7.1

Flybase annnotation

CDS [Dana\GF19315-cds]; exon [dana_GLEANR_2124:6]; intron [Dana\GF19315-in]

No Repeatable elements found

mature
  1. dan_1420  scaffold_13137:249978-250001 -
  2. scaffold_13137:254076-254099 -
star
  1. scaffold_1034:504-529 -
  2. scaffold_7492:1127-1152 -
  3. scaffold_7492:4720-4745 -
  4. scaffold_7492:8143-8168 -
  5. scaffold_8716:604-629 -
  6. scaffold_9235:8069-8094 -
  7. scaffold_12844:761-786 -
  8. scaffold_12911:161772-161797 -
  9. scaffold_13034:1435550-1435575 -
  10. scaffold_13034:1874774-1874799 -
  11. scaffold_13034:1912728-1912753 -
  12. scaffold_13045:190735-190760 -
  13. scaffold_13077:525277-525302 -
  14. scaffold_13077:527663-527688 -
  15. dan_1420  scaffold_13137:249929-249954 -
  16. scaffold_13137:254027-254052 -
  17. scaffold_13228:894483-894508 -
  18. scaffold_13230:2551938-2551963 -
  19. scaffold_13279:80851-80876 -
  20. scaffold_13339:2906041-2906066 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAAAAATGCTGCGCTTGGATGGATTAAGATGGGGCCAATGCGACCGGAATCAGCTCCTAATATCAAGGCAGAACAAGTCGTCGGTAATACGACGGCTTGGACACCGGAAGCTAACGAGCCACGACAAAATTTGATTGCATGCATTGGCAAGGAGCAAAAAGTAAAATCCGGAAGATTACATAGTTCCCCACTCATTGCAGATCTACAAGGAGAGCCGCAGACGGACCCCGAACCACAAGCCCAAGGTTGT
*******************************************************************************************************************....................................((.((.....((..((((.....))))))...)).))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V039
embryo
 V106
head
....................TTGATTAAGATGGGGCCAATTCGAC.............................................................................................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................TCCCCACTCATTGCAGATCTACAAGGA....................................... 27 0 2 0.50 1 0 1 0 0 0
...................................................................................................................CGAGCCACGACAAAATTTGATTGC................................................................................................................ 24 0 2 0.50 1 0 0 0 1 0
............................................................................................................................................................................................................TACAAGGAGAGCCGCAGACGGACCCCGA................... 28 0 2 0.50 1 0 1 0 0 0
......................................................................................................................................ATTGCATGCATTGGCAAGGAGC............................................................................................... 22 0 4 0.50 2 2 0 0 0 0
..ATAAGTGATGCGCTTGGATGGA................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
.................................................................................................................................................................................TACATAGTTCCCCACTCATTGCAGATC............................................... 27 0 2 0.50 1 1 0 0 0 0
............................................................................................................AAGCTAACGAGCCACGACAAAATTTG..................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
........GACGCGCTTGGATGGATTAAT.............................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0
.....................................................................................................................................................................................................................AGCCGCAGACGGACCCCGAAC................. 21 0 20 0.10 2 0 2 0 0 0
............................................................................................................................................................................................................................GACGGACCCCGAACCACAAGCCCAAGG.... 27 0 20 0.10 2 0 2 0 0 0
..................................................................................................................................................................TAAAATCCGGAAGATTACATAGTTCC............................................................... 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................GACACCGGAAGCTAACGAGCC.................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1
................................................................................................................................................................................................................................GACCCCGAACCACAAGCCCAAGG.... 23 0 20 0.05 1 1 0 0 0 0
.................................................................................TCGGTAATACGACGGCTTGGACACC................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
.....................................................................................TAATACGACGGCTTGGACACC................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................AAAATCCGGAAGATTACATAGTTCCCC............................................................. 27 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ATTTTTTACGACGCGAACCTACCTAATTCTACCCCGGTTACGCTGGCCTTAGTCGAGGATTATAGTTCCGTCTTGTTCAGCAGCCATTATGCTGCCGAACCTGTGGCCTTCGATTGCTCGGTGCTGTTTTAAACTAACGTACGTAACCGTTCCTCGTTTTTCATTTTAGGCCTTCTAATGTATCAAGGGGTGAGTAACGTCTAGATGTTCCTCTCGGCGTCTGCCTGGGGCTTGGTGTTCGGGTTCCAACA
***************************************************************....................................((.((.....((..((((.....))))))...)).))******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body
...................................GGTTACGCTGGCCTTAGTCGAGGAT............................................................................................................................................................................................... 25 0 2 2.50 5 3 0 2 0 0
...................................................................................................................................................................................GTATCAAGGGGTGAGTAACGTCTAGAT............................................. 27 0 2 2.50 5 5 0 0 0 0
.......ACCACGCGAACCTCCCTAA................................................................................................................................................................................................................................. 19 2 3 1.67 5 1 1 0 3 0
....................................GTTACGCTGGCCTTAGTCGAGGAT............................................................................................................................................................................................... 24 0 2 1.50 3 2 0 1 0 0
.......................................................................................................................................................................................CAAGGGGTGAGTAACGTCTAGATGTT.......................................... 26 0 2 1.50 3 3 0 0 0 0
........................................................................................................................................................................................................CTAGATGTTCCTCTCGGCGTCTGCCT......................... 26 0 2 1.00 2 2 0 0 0 0
......................CTAATTCTACCCCGGTTACGCTGGCCTT......................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................GCTGCCGAACCTGTGGCCTTCGATTGCT..................................................................................................................................... 28 0 20 0.70 14 14 0 0 0 0
.........................................................................................................................................................................................AGGGGTGAGTAACGTCTAGATGTTCCT....................................... 27 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................AACCGTTCCTCGTTTTTCATTTTAGGCCT.............................................................................. 29 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................TAAGGGGTGAGTAACGTCTAGATGTT.......................................... 26 1 2 0.50 1 0 1 0 0 0
..............................ACCCCGGTTACGCTGGCCTTAG....................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
....TTTACGACGCGAACCTACCTAATTC.............................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
...................................GGCTACGCTGGCCTTAGTCGAGGAT............................................................................................................................................................................................... 25 1 2 0.50 1 0 0 1 0 0
..........................................................................................................CCTTCGATTGCTCGGTGCTGTTTT......................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................CTAGATGTTCCTCTCGGCGTCTGCCTG........................ 27 0 2 0.50 1 1 0 0 0 0
.................................................................................................................TTGCTCGGTGCTGTTTTAAACTAACG................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
..TTTTTACGACGCGAACCTACCTAATTCT............................................................................................................................................................................................................................. 28 0 2 0.50 1 1 0 0 0 0
..................................CGGTTACGCTGGCCTTAGTCGAGGAT............................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................CAAGGGGTGAGTAACGTCTAGATG............................................ 24 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................................AGTAACGTCTAGATGTTCCTCTCGG.................................. 25 0 2 0.50 1 1 0 0 0 0
......TACGACGCGAACCTACCTAATTCTAC........................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................ACGTCTAGATGTTCCTCTCGGCGTCTGC........................... 28 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................TCAAGGGGTGAGTAACGTCTAGATGGT.......................................... 27 1 2 0.50 1 0 1 0 0 0
..................................................................................................................TGCTCGGTGCTGTTTTAAACTAACGT............................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
...TTTTACGACGCGAACCTACCTAAT................................................................................................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................GTGGCCTTCGATTGCTCGGTGCTGTTTT......................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................GGTGAGTAACGTCTAGATGTTCCT....................................... 24 0 2 0.50 1 1 0 0 0 0
............................CTACCCCGGTTACGCTGGCCTTAGT...................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
..................................................................................................................TGCTCGGTGCTGTTTTAAACTAACG................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
..............................................................................................................CGATTGCTCGGTGCTGTTTTAAACT.................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.....TTACGACGCGAACCTACCTAATTCT............................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................AACCGTTCCTCGTTTTTCATATTAGGCCT.............................................................................. 29 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................GTAACCGTTCCTCGTTTTTCATTT..................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................CAAGGGGTGAGTAACGTCTAGATGT........................................... 25 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................AGATGTTCCTCTCGGCGTCTGCCT......................... 24 0 2 0.50 1 0 1 0 0 0
.....TTACGACGCGAACCTACCTAATT............................................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................CGTAACCGTTCCTCGTTTTTCATTTT.................................................................................... 26 0 2 0.50 1 1 0 0 0 0
....TTTACGACGCGAACCTACCTAATTCTAC........................................................................................................................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0
........................................................................................................................................................................................AAGGGGTGAGTAACGTCTAGATGTT.......................................... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................TCTAGATGTTCCTCTCGGCGTCTGCCT......................... 27 0 2 0.50 1 1 0 0 0 0
.......ACCACGCGAACCTCCCTAAG................................................................................................................................................................................................................................ 20 3 15 0.47 7 0 0 0 4 3
............................................................................................TGCCGAACCTGTGGCCTTCGATTGCT..................................................................................................................................... 26 0 20 0.40 8 8 0 0 0 0
......................................................................................................................................................................................................................CGGCGTCTGCCTGGGGCTTGGTGT............. 24 0 20 0.35 7 6 0 1 0 0
...........................................TGGCCTTAGTCGAGGATTATAGTTCCGT.................................................................................................................................................................................... 28 0 20 0.35 7 6 0 0 0 1
..................................................................................................................................AAACTAACGTACGTAACCGTTCCTCGT.............................................................................................. 27 0 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................................GTTCCTCTCGGCGTCTGCCTGGGGCT................... 26 0 20 0.30 6 6 0 0 0 0
...................................................................CCGTCTTGTTCAGCAGCCATTATGCT.............................................................................................................................................................. 26 0 20 0.30 6 0 6 0 0 0
.....................................................................................................................................................TTCCTCGTTTTTCATTTTAGGCCTTCT........................................................................... 27 0 7 0.29 2 2 0 0 0 0
..............................................................................................................CGATTGTTCGGTGCTGTTTTAAACT.................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0
......................................................................................................................................CAACGTACGTAACCGTTCCTCGTTTGT.......................................................................................... 27 2 4 0.25 1 0 1 0 0 0
.....................................................CGAGGATTATAGTTCCGTCTTGTTCAG........................................................................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0
......................................................................................................................................................................................................................CGGCGTCTGCCTGGGGCTTGGTGTT............ 25 0 20 0.20 4 4 0 0 0 0
.......................................................................................................................................................................................................................GGCGTCTGCCTGGGGCTTGGTGT............. 23 0 20 0.20 4 4 0 0 0 0
........................................................................................................................................................................................................................GCGTCTGCCTGGGGCTTGGTGT............. 22 0 20 0.15 3 3 0 0 0 0
............................................................................................................................................................................................................................CTGCCTGGGGCTTGGTGTTCGGGTTCCA... 28 0 20 0.15 3 3 0 0 0 0
....................................................................................................................................................GTTCCTCGTTTTTCATTTTAGGCCT.............................................................................. 25 0 7 0.14 1 0 1 0 0 0
...................................................................................................................................................CGTTCCTCGTTTTTCATTTTAGGCCTT............................................................................. 27 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................................................TTTCATTTTAGGCCTTCTAATGTAT.................................................................... 25 0 7 0.14 1 0 1 0 0 0
......................................................................................................................................................TCCTCGTTTTTCATTTTAGGCCTTCTAAT........................................................................ 29 0 7 0.14 1 1 0 0 0 0
..........................................................................................................................................................CGTTTTTCATTTTAGGCCTTCTAATGT...................................................................... 27 0 7 0.14 1 1 0 0 0 0
...................................................................................................................................................CGTTCCTCGTTTTTCATTTTAGGCCTTCT........................................................................... 29 0 7 0.14 1 1 0 0 0 0
....................................................................................................................................................GTTCCTCGTTTTTCATTTTAGGCCTTCT........................................................................... 28 0 7 0.14 1 1 0 0 0 0
......................................................................................................................................................TCCTCGTTTTTCATTTTAGGCCTTCT........................................................................... 26 0 7 0.14 1 0 1 0 0 0
.......................................................................................................................................................CCTCGTTTTTCATTTTAGGCCTTCTAAT........................................................................ 28 0 7 0.14 1 1 0 0 0 0
.......................................................................................................................................................CCTCGTTTTTCATTTTAGGCCTTCTAA......................................................................... 27 0 7 0.14 1 0 1 0 0 0
..........................................................................................GCTGCCGAACCTGTGGCCTTCGATTGC...................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
.....................................................CGAGGATTATAGTTCCGTCTTGTT.............................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................................TCATTTTAGGCCTTCTAATGTATCAAG................................................................ 27 0 20 0.10 2 2 0 0 0 0
..............................................CCTTAGTCGAGGATTATAGTTCCGT.................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
....................................................................................................................................................................................................................CTCGGCGTCTGCCTGGGGCTTGGTGT............. 26 0 20 0.10 2 0 0 2 0 0
.......................................................................................................................................................................................................................GGCGTCTGCCTGGGGCTTGGTGTT............ 24 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................................................TTCCTCTCGGCGTCTGCGTGGGGCTT.................. 26 1 20 0.05 1 1 0 0 0 0
............................................GGCCTTAGTCGAGGATTATAGTTCCG..................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...............................................................AGTTCCGTCTTGTTCAGCA......................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
....................................................TCGAGGATTATAGTTCCGTCTTG................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................................................CGTCTGCCTGGGGCTTGGTGTT............ 22 0 20 0.05 1 1 0 0 0 0
.............................................................ATAGTTCCGTCTTGTTCAGCAGCCATTAT................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................CCTCTCGGCGTCTGCCTGGGGCTTGGTG.............. 28 0 20 0.05 1 1 0 0 0 0
....................................................................CGTCTTGTTCAGCAGCCATTATGATC............................................................................................................................................................. 26 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................................................ACGGCGTCTGCCTGGGGCTTGGTGT............. 25 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................................GGGGCTTGGTGTTCGGGTTCCAACA 25 0 20 0.05 1 0 0 0 0 1
............................................GGCCTTAGTCGAGGATTAAAGTTCCGT.................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................CTGGGGCTTGGTGTTCGGGTT...... 21 0 20 0.05 1 0 1 0 0 0
...................................................................CCGTCTTGTTCAGCAGCCATTATG................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
..............................................................................................CCGAACCTGTGGCCTTCGATTGCTCGG.................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................................GGGCTTGGTGTTCGGATTCCAACA 24 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGTCTGCCTGGGGCTTGGTGT............. 21 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................GTTCCTCTCGGCGTCTGCCTGGGGCTT.................. 27 0 20 0.05 1 1 0 0 0 0
..................................................................TCCGTCTTGTTCAGCAGCCATTATGC............................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................TTGGCGTCTGCCTGCGGCTTGGT............... 23 2 20 0.05 1 1 0 0 0 0
...............................................................AGTTCCGTCTTGTTCAGCGGCCATTAT................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................AGGCCTTCTAATGTATCAAGGGGTGAG......................................................... 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................CTGTGGCCTTCGATTGCTCGGTGCT.............................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................................GGCTTGGTGTTCGGGTTCCAA.. 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................................CGGCGTCTGCCTGGGGCTTGGTG.............. 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................CGGGGCTTGGTGTTCGGGGT...... 20 2 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................CGGGGCTTGGTGTTCGGGTT...... 20 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................TCTCGGCGTCTGCCTGGGGCTTGGTG.............. 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................TCTCGGCGTCTGCCTGGGGCTTGGTGT............. 27 0 20 0.05 1 1 0 0 0 0
............................................................TATAGTTCCGTCTTGTTCAGCAGCCG..................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................CTCGGCGTCTGCCTGGGGCTTGGTGTT............ 27 0 20 0.05 1 1 0 0 0 0
...................................................................................................CCTGTGGCCTTCGATTGCTCGG.................................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................................................................................GCTTGGTGTTCGGGTTCCA... 19 0 20 0.05 1 1 0 0 0 0
.........................................................................................................GCCTTCGATTGCTCGGTGCTG............................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.........................................................GATTATAGTTCCGTCTTGTTCAGCAG........................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
...............................................CTTAGTCGAGGATTATAGTTCCGT.................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................................................TTCCTCTCGGCGTCTGCCTGGGGCT................... 25 0 20 0.05 1 1 0 0 0 0
..............................................................................................CCGAACCTGTGGCCTTCGATTGCTCGGT................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................CGGCGTCTTCCTGGGGCTTGGTG.............. 23 1 20 0.05 1 0 0 1 0 0
..................................................................................................................................................................................................................CTCTCGGCGTCTGCCTGGGGCTT.................. 23 0 20 0.05 1 1 0 0 0 0
................................................................GTTCCGTCTTGTTCAGCAGCCATTAT................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0
....................................................................................................................................................................................................................CTCGGCGTCTGCCTGGGGCTTG................. 22 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................CATTTTAGGCCTTCTAATGTATCAA................................................................. 25 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................TAGGCCTTCTAATGTATCAAGGGGTGAG......................................................... 28 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................TCGGCGTCTGCCTGGGGCTTGGTGT............. 25 0 20 0.05 1 1 0 0 0 0
....................................................................................................CTGTGGCCTTCGATTGCTCGGT................................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................................................................GGCGTCTGCCTGGGGCTTGGT............... 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................GTCTGCCTGGGGCTTGGTTT............. 20 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................................GTCTGCCTGGGGCTTGGTG.............. 19 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................................GGGCTTGGTGTTCGGGTTCCAAC. 23 0 20 0.05 1 1 0 0 0 0
..................................................................TCCGTCTTGTTCAGCAGCCATTATGCT.............................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................TGTTCCTCTCGGCGTCTGCCTGGGGCTT.................. 28 0 20 0.05 1 1 0 0 0 0
..............................................................................................CCGAACCTGTGGCCTTCGATTGCTC.................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
..............................................CCTTAGTCGAGGATTATAGTTCCGTCT.................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
...........................................................ATATAGTTCCGTCTTGTTCAGCAGCCAT.................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
.................................................................TTCCGTCTTGTTCAGCAGCCATTA.................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TTCGGCGTCTGCCTGGGGCTTGGTGT............. 26 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................CTCGGCGTCTGCCTGGGGCTTGGCGT............. 26 1 20 0.05 1 0 1 0 0 0
............................................................................................TGCCGAACCTGTGGCCTGCGATTGCT..................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
.....................................................................................................TGTGGCCTTAGATTGCTCGGT................................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................................TCCTCTCGGCGTCTGCCTGGGGCTTGGT............... 28 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13137:249866-250116 - dan_1420 TAAAAAATGCTGCGCTTGGATGGATTAAGATGGGGCCAATGCGACCGGAATCAGCTCCTAATATCAAGGCAGAACAAGTCGTCGGTAATACG---------ACGGCTTGGACACCGGAAGCTAACGAGCC-ACGACAAAATTTGATTGCATGCATTGGCAAGGAGCAAAAAGTAAAATCCGGAAGATTACATAGTTCCCCACTCATTGCAGATCTACAAGGAGAGCCGCAGACGGACCCCGAACCACAAGCCCAAGGTTGT
droBip1 scf7180000396459:3568-3672 + TT---------------AAATGAATTTTGACAGAAACAGTGCGACTGGAATAAGTTCCAGATTCCAAAACACAACAGGTCTTCTCTACTCGTGTGTTTCTGCC-----------CAAGAGCTACCGAGCCA----------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778484:1268-1292 - TGCAAAAAACGAGGCTTGGTTGGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000412320:1621-1659 + TTCAAGACACCAATTTGGGGTGGATTGTGTTAGGACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_singleton_959:52317-52419 + TACAAAACACGAAACTGGGATGGATTGTGGCAGGAAAAG---------------------------------------TCAAATCTGCCCACAAGTCCTCACCCATTTGTGCAACGGGAGTAAACGAGCTCATGGAAAGATT-----------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_118:32413-32515 + TACAAAACACGAAACTGGGATGGATTGTGGCAGGAAAAG---------------------------------------TCAAATCTGCCCACAAGTCCTCACCCATTTGTGCAACGGGAGTAAACGAGCTCATGGAAAGATT-----------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TAAAAAATGCTGCGCTTGGATGGATTAAGATGGGGCCAATGCGACCGGAATCAGCTCCTAATATCAAGGCAGAACAAGTCGTCGGTAATACG---------ACGGCTTGGACACCGGAAGCTAACGAGCC-ACGACAAAATTTGATTGCATGCATTGGCAAGGAGCAAAAAGTAAAATCCGGAAGATTACATAGTTCCCCACTCATTGCAGATCTACAAGGAGAGCCGCAGACGGACCCCGAACCACAAGCCCAAGGTTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................TCCCCACTCATTGCAGATCTACAAGGA.......................................2720.501100000
............................................................................................................................CGAGCC-ACGACAAAATTTGATTGC................................................................................................................2420.501001000
......................................................................................................................................................................................................................TACAAGGAGAGCCGCAGACGGACCCCGA...................2820.501100000
................................................................................................................................................ATTGCATGCATTGGCAAGGAGC...............................................................................................2240.502020000
...........................................................................................................................................................................................TACATAGTTCCCCACTCATTGCAGATC...............................................2720.501010000
.....................................................................................................................AAGCTAACGAGCC-ACGACAAAATTTG.....................................................................................................................2620.501100000
...............................................................................................................................................................................................................................AGCCGCAGACGGACCCCGAAC.................21200.102200000
......................................................................................................................................................................................................................................GACGGACCCCGAACCACAAGCCCAAGG....27200.102200000
............................................................................................................................................................................TAAAATCCGGAAGATTACATAGTTCC...............................................................26200.051010000
.............................................................................................................GACACCGGAAGCTAACGAGCC-..................................................................................................................................21200.051000001
..........................................................................................................................................................................................................................................GACCCCGAACCACAAGCCCAAGG....23200.051010000
.................................................................................TCGGTAATACG---------ACGGCTTGGACACC..................................................................................................................................................25200.051100000
.....................................................................................TAATACG---------ACGGCTTGGACACC..................................................................................................................................................21200.051100000
.............................................................................................................................................................................AAAATCCGGAAGATTACATAGTTCCCC.............................................................27200.051010000
droBip1
TT---------------AAATGAATTTTGACAGAAACAGTGCGACTGGAATAAGTTCCAGATTCCAAAACACAACAGGTCTTCTCTACTCGTGTGTTTCTGCC-----------CAAGAGCTACCGAGCCA----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGCAAAAAACGAGGCTTGGTTGGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTCAAGACACCAATTTGGGGTGGATTGTGTTAGGACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TACAAAACACGAAACTGGGATGGATTGTGGCAGGAAAAG---------------------------------------TCAAATCTGCCCACAAGTCCTCACCCATTTGTGCAACGGGAGTAAACGAGCTCATGGAAAGATT-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........AAACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................202016.053210294000118161
..........GAAACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................21205.05101078102012260
...........AAACTGGGATGGATTGTGGCG.....................................................................................................................................................................................................................................21203.406806500003000
............AACTGGGATGGATTGTGGCG.....................................................................................................................................................................................................................................20203.056105500006000
............AACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................19202.905805700010000
...........AAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................19202.905805600002000
...........AAACTGGGATGGATTGTG........................................................................................................................................................................................................................................18202.855705500000002
.......CACGAAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................23202.2044028000001420
..........GAAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................20202.004002400004480
.......CACGAAACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................24201.9539017000015160
..........GAAACTGGGATGGATTGTGGCAG....................................................................................................................................................................................................................................23201.753503200003000
..........GAAACTGGGATGGATTGTGGCA.....................................................................................................................................................................................................................................22201.703402800003102
............AACTGGGATGGATTGTGGCGT....................................................................................................................................................................................................................................21201.352702700000000
............AACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................18200.751501400000100
...........AAACTGGGATGGATTGTGGCA.....................................................................................................................................................................................................................................21200.50100700000300
...........AAACTGGGATGGATTGTGT.......................................................................................................................................................................................................................................19200.50100900001000
.......CACGAAACTGGGATGGATTGT.........................................................................................................................................................................................................................................21200.3570500000020
...........AAACTGGGATGGATTGTGGCGT....................................................................................................................................................................................................................................22200.3570700000000
...........AAACTGGGATGGATTGTGGT......................................................................................................................................................................................................................................20200.3570700000000
...........AAACTGGGATGGATTGTGGCAG....................................................................................................................................................................................................................................22200.3060500000010
...........AAACTGGGATGGATTGTGGCT.....................................................................................................................................................................................................................................21200.3060600000000
.........CGAAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................21200.3060300001020
.......CACGAAACTGGGATGGATTGTGGA......................................................................................................................................................................................................................................24200.3060300000210
..........GAAACTGGGATGGATTGTGGCAGGA..................................................................................................................................................................................................................................25200.3060600000000
.......CACGAAACTGGGATGGATTGTG........................................................................................................................................................................................................................................22200.3060300000120
..........................................................................................................TTGTGCAACGGGAGTAAACGAGCTCAA................................................................................................................................27170.2950000000500
..........GAAACTGGGATGGATTGTG........................................................................................................................................................................................................................................19200.2550300001010
.............ACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................18200.2550500000000
.........CGAAACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................22200.2550100000040
........ACGAAACTGGGATGGATTGTGGC......................................................................................................................................................................................................................................23200.2550000000140
..............CTGGGATGGATTGTGGCGT....................................................................................................................................................................................................................................19200.2040400000000
....AAACACGAAACTGGGATGGATTG..........................................................................................................................................................................................................................................23200.2040210001000
.............ACTGGGATGGATTGTGGCGT....................................................................................................................................................................................................................................20200.2040400000000
...............................................................................CAAATCTGCCCACAAGTCCTC.................................................................................................................................................................21100.2020200000000
..............CTGGGATGGATTGTGGCG.....................................................................................................................................................................................................................................18200.2040400000000
.........................TGTGGCAGGAAAAG---------------------------------------TCAAATCTG..............................................................................................................................................................................23200.1530300000000
..........GAAACTGGGATGGATTGTGGA......................................................................................................................................................................................................................................21200.1530300000000
.............ACTGGGATGGATTGTGGCG.....................................................................................................................................................................................................................................19200.1530000003000
...........AAACTGGGATGGATTGTGTT......................................................................................................................................................................................................................................20200.1530300000000
........ACGAAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................22200.1530300000000
...........AAACTGGGATGGATTGTT........................................................................................................................................................................................................................................18200.1530300000000
.......CACGAAACTGGGATGGATTG..........................................................................................................................................................................................................................................20200.1530200000010
............AACTGGGATGGATTGTGGCA.....................................................................................................................................................................................................................................20200.1530000000102
...............TGGGATGGATTGTGGCAGGAA.................................................................................................................................................................................................................................21200.1530300000000
.................................................................................................CTCACCCATTTGTGCAACGGGA..............................................................................................................................................22160.1320000000020
.............................................................................................................TGCAACGGGAGTAAACGAGC....................................................................................................................................20170.1220000000020
.......................................................................................................CATTTGTGCAACGGGAGTA...........................................................................................................................................19180.1120200000000
........ACGAAACTGGGATGGATT...........................................................................................................................................................................................................................................18200.1020000000200
...................................AAAG---------------------------------------TCAAATCTGCCCACAAGT.....................................................................................................................................................................22100.1010100000000
..........GAAACTGGGATGGATTGTGGCAC....................................................................................................................................................................................................................................23200.1020200000000
..CAAAACACGAAACTGGGATGGATTG..........................................................................................................................................................................................................................................25200.1020000000020
..............................................................................TCAAATCTGCCCACAAGTCCTCACCC.............................................................................................................................................................26100.1010100000000
....................TGGATTGTGGCAGGAAAAG---------------------------------------TCAAT..................................................................................................................................................................................24200.1020200000000
........ACGAAACTGGGATGGATTGTGGCA.....................................................................................................................................................................................................................................24200.1020200000000
.ACAAAACACGAAACTGGGATG...............................................................................................................................................................................................................................................21200.1020100010000
...........AAACTGGGATGGATTGTGGTT.....................................................................................................................................................................................................................................21200.1020200000000
.......CACGAAACTGGGATGGATTGTGGCA.....................................................................................................................................................................................................................................25200.1020100000100
..........GAAACTGGGATGGATTGTGGCAGGAA.................................................................................................................................................................................................................................26200.1020200000000
..............CTGGGATGGATTGTGGCA.....................................................................................................................................................................................................................................18200.1020000000200
.....................................................................................TGCCCACAAGTCCTCACCCA............................................................................................................................................................20100.1010100000000
....................TGGATTGTGGCAGGAAAAG---------------------------------------TCAAATC................................................................................................................................................................................26200.1020200000000
.......CACGAAACTGGGATGGATTGTGGT......................................................................................................................................................................................................................................24200.1020000100010
...........AAACTGGGATGGATTGTGGCAGG...................................................................................................................................................................................................................................23200.1020200000000
..................................................................................ATCTGCCCACAAGTCCTCACCCA............................................................................................................................................................23100.1010100000000
.............................................................................................................TGCAACGGGAGTAAACGAGCTCATGGA.............................................................................................................................27130.0810100000000
...............................................................................................TCCTCACCCATTTGTGCAACGGGAGTAA..........................................................................................................................................28160.0610100000000
...............................................................................................TCCTCACCCATTTGTGCAACGGGAG.............................................................................................................................................25160.0610100000000
..................................................................................................TCACCCATTTGTGCAACGGGAGTAAA.........................................................................................................................................26160.0610100000000
................................................................................................CCTCACCCATTTGTGCAACGGGAG.............................................................................................................................................24160.0610100000000
...............................................................................................TCCTCACCCATTTGTGCAACGGGA..............................................................................................................................................24160.0610100000000
...............................................................................................TCCTCACCCATTTGTGCAACGGGAGTAAA.........................................................................................................................................29160.0610100000000
..................................................................................................TCACCCATTTGTGCAACGGGAGT............................................................................................................................................23160.0610100000000
...........................................................................................................TGTGCAACGGGAGTAAACGAGCA...................................................................................................................................23170.0610000000010
...........................................................................................................TGTGCAACGGGAGTAAACGAGCTCA.................................................................................................................................25170.0610000001000
...........................................................................................................TGTGCAACGGGAGTAAACGAGCTCAT................................................................................................................................26170.0610100000000
.......................................................................................................CATTTGTGCAACGGGAGTAAACGAGC....................................................................................................................................26170.0610000000010
........................................................................................................ATTTGTGCAACGGGAGTAAACGAGC....................................................................................................................................25170.0610100000000
.......................................................................................................CATTTGTGCAACGGGAGTAAACGAGCT...................................................................................................................................27170.0610100000000
.........................................................................................................TTTGTGCAACGGGAGTAAACGAGC....................................................................................................................................24170.0610010000000
............................................................................................................GTGCAACGGGAGTAAACGAGC....................................................................................................................................21170.0610001000000
...........................................................................................................TGTGCAACGGGAGTAAACC.......................................................................................................................................19180.0611000000000
..........................................................................................................TTGTGCAACGGGAGTAAACG.......................................................................................................................................20180.0610000001000
..........................................................................................................TTGTGCAACGGGAGTAAACGAG.....................................................................................................................................22180.0610100000000
...........................................................................................................TGTGCAACGGGAGTAAAA........................................................................................................................................18180.0610000000100
................................................................................................................AACGGGAGTAAACGAGCT...................................................................................................................................18180.0610100000000
...............................................................................................TCCTCACCCATTTGTGCAACGGG...............................................................................................................................................23180.0610100000000
...........................................................................................................TGTGCAACGGGAGTAAAC........................................................................................................................................18180.0610100000000
.........................................................................................................TTTGTGCAACGGGAGTAAACG.......................................................................................................................................21180.0610000000010
...............................................................................................................CAACGGGAGTAAACGAGCTC..................................................................................................................................20180.0610100000000
.......................................................................................................CATTTGTGCAACGGGAGTAAA.........................................................................................................................................21180.0610100000000
.....................................................................................................CCCATTTGTGCAACGGGAGC............................................................................................................................................20190.0510000010000
...............TGGGATGGATTGTGGCAGGAAAAG---------------------------------------.......................................................................................................................................................................................24200.0510100000000
..............CTGGGATGGATTGTGGCAGGA..................................................................................................................................................................................................................................21200.0510001000000
................................GGAAAAG---------------------------------------TCAAATCTGCCCA..........................................................................................................................................................................20200.0510100000000
..CAAAACACGAAACTGGGATGG..............................................................................................................................................................................................................................................21200.0510000000010
.....................GGATTGTGGCAGGAAAAG---------------------------------------TCAAAT.................................................................................................................................................................................24200.0510100000000
........ACGAAACTGGGATGGATTGTGGCAG....................................................................................................................................................................................................................................25200.0510100000000
...........................TGGCAGGAAAAG---------------------------------------TCAAATCTG..............................................................................................................................................................................21200.0510000001000
...AAAACACGAAACTGGGATG...............................................................................................................................................................................................................................................19200.0510100000000
....AAACACGAAACTGGGATGG..............................................................................................................................................................................................................................................19200.0510100000000
.........................................................................................................................AAACGAGCTCATGGAAAGATT-----------------------------------------------------------------------------------------------------------------------21200.0510100000000
.ACAAAACACGAAACTGGGATGG..............................................................................................................................................................................................................................................22200.0510100000000
.....AACACGAAACTGGGATGGATTG..........................................................................................................................................................................................................................................22200.0510100000000
TACAAAACACGAAACTGGGATGGAT............................................................................................................................................................................................................................................25200.0510000000010
.........CGAAACTGGGATGGATTGTG........................................................................................................................................................................................................................................20200.0510000001000
....AAACACGAAACTGGGATGGATT...........................................................................................................................................................................................................................................22200.0510100000000
..........GAAACTGGGATGGATTGTGGCAGG...................................................................................................................................................................................................................................24200.0510000010000
....AAACACGAAACTGGGATGGATTGT.........................................................................................................................................................................................................................................24200.0510100000000
TACAAAACACGAAACTGGGATGG..............................................................................................................................................................................................................................................23200.0510100000000
..CAAAACACGAAACTGGGATGGATTGT.........................................................................................................................................................................................................................................26200.0510010000000
................GGGATGGATTGTGGCAGG...................................................................................................................................................................................................................................18200.0510100000000
.........................TGTGGCAGGAAAAG---------------------------------------TCAAATCTGCCCA..........................................................................................................................................................................27200.0510100000000
....AAACACGAAACTGGGATG...............................................................................................................................................................................................................................................18200.0510100000000
..........................GTGGCAGGAAAAG---------------------------------------TCAAATC................................................................................................................................................................................20200.0510100000000
...............................AGGAAAAG---------------------------------------TCAAATCTGCCCA..........................................................................................................................................................................21200.0510100000000
..........GAAACTGGGATGGATTGT.........................................................................................................................................................................................................................................18200.0510100000000
..........GAAACTGGGATGGATTGTGGCAGT...................................................................................................................................................................................................................................24200.0510100000000
.......CACGAAACTGGGATGGATTGTAA.......................................................................................................................................................................................................................................23200.0510000000010
...........AAACTGGGATGGATTGTGA.......................................................................................................................................................................................................................................19200.0510100000000
TACAAAACACGAAACTGGGATGGATT...........................................................................................................................................................................................................................................26200.0510100000000
........................................................................................................................TAAACGAGCTCATGGAAAG..........................................................................................................................19200.0510100000000
TACAAAACACGAAACTGGGATGGA.............................................................................................................................................................................................................................................24200.0510100000000
..............CTGGGATGGATTGTGGCAGGT..................................................................................................................................................................................................................................21200.0510100000000
..........................GTGGCAGGAAAAG---------------------------------------TCAAATCTGT.............................................................................................................................................................................23200.0510100000000
................GGGATGGATTGTGGCA.....................................................................................................................................................................................................................................16200.0510000000010
..............CTGGGATGGATTGTGGCAGGAAAA...............................................................................................................................................................................................................................24200.0510000001000
.......CACGAAACTGGGATGGATTGTGGCAG....................................................................................................................................................................................................................................26200.0510100000000
.........................................................................................................................AAACGAGCTCATGGAAAG..........................................................................................................................18200.0510001000000
.......CACGAAACTGGGATGGAT............................................................................................................................................................................................................................................18200.0510100000000
.........CGAAACTGGGATGGATTGTGGCAGG...................................................................................................................................................................................................................................25200.0510100000000
............AACTGGGATGGATTGTGTT......................................................................................................................................................................................................................................19200.0510100000000
...................ATGGATTGTGGCAGGAAAAG---------------------------------------TT.....................................................................................................................................................................................22200.0510000001000
TACAAAACACGAAACTGGGATG...............................................................................................................................................................................................................................................22200.0510000001000
...............TGGGATGGATTGTGGCAGGAAAAG---------------------------------------TCAA...................................................................................................................................................................................28200.0510100000000
............AACTGGGATGGATTGTGGCGA....................................................................................................................................................................................................................................21200.0510100000000
.....AACACGAAACTGGGATGG..............................................................................................................................................................................................................................................18200.0510100000000
..............................CAGGAAAAG---------------------------------------TCAAATCTGCCC...........................................................................................................................................................................21200.0510100000000
..........GAAACTGGGATGGATTGTGGCAGGG..................................................................................................................................................................................................................................25200.0510000000100
droPer2
TACAAAACACGAAACTGGGATGGATTGTGGCAGGAAAAG---------------------------------------TCAAATCTGCCCACAAGTCCTCACCCATTTGTGCAACGGGAGTAAACGAGCTCATGGAAAGATT-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........CGAAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................21200.102000002
.......CACGAAACTGGGATGGATTGTGG.......................................................................................................................................................................................................................................23200.051000001
..............................CAGGAAAAG---------------------------------------TCAAATCTGCCCACA........................................................................................................................................................................24200.051010000
................................................................................................CCTCACCCATTTGTGCAACGGGAG.............................................................................................................................................24200.051010000
.............................................................................................................TGCAACGGGAGTAAACGAGCTCATGG..............................................................................................................................26200.051010000
...................................................................................................CACCCATTTGTGCAACGGGA..............................................................................................................................................20200.051000010
..............................................................................................................GCAACGGGAGTAAACGAGC....................................................................................................................................19200.051000001
...........................................................................................................TGTGCAACGGGAGTAAACG.......................................................................................................................................19200.051000010

Generated: 05/18/2015 at 01:39 AM