ID:

dan_1418

 Coordinate:

scaffold_13137:188668-188818 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -10.8 -10.5

Flybase annnotation

CDS [Dana\GF19408-cds]; exon [dana_GLEANR_2145:1]; intron [Dana\GF19408-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------#####---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACTCACTCAGCTTTACCAATTCTGCATCCATCGTTGGGCCCAAGATGACGTAGGTGATCTTTGCTGTTGACTTTATGCTATAAGAGAATCATACAATGGGGAGAAGACCTGACGGATCTCTCTTTCGAGGCTGGATTGGTTTGCTTAGAGACTAAATTTAAAGATAAGGTCCTACTTTACTATTATTATGGTGGGAGTCGATACTAATTGGCGCTGCTATCGAGGTTCGCCGTGGAAATTATTGTTATGG
*****************************************************************************************.............((.(((((...(((.((((......)))))))....))))).))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V055
head
 V105
male body		 V106
head
........................................................................................................................................................................................TATTATGGTGGGAGTCGGTACTAAT.......................................... 25 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................................CTCTTTCGAGGCTGGATTGGTTTGCT......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................CAATTCTGCATCCATCGTTGGGCCCAA............................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCATACAATGGGGAGAAGACCTGAC......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................TACTAATTCGCGCTGCTATCGAGGTTC...................... 27 1 1 1.00 1 1 0 0 0 0 0
.............TTACCAATTCTGCATCCATCGTTGGGCC.................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TACAATGGGGAGAAGACCTGACGGA...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TCTCTCTTTCGAGGCTGGATTGGTC............................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.......................TGCATCCATCGTTGGGCCCAAGATG........................................................................................................................................................................................................... 25 0 20 0.55 11 8 2 1 0 0 0
.....................TCTGCATCCATCGTTGGGCCCAAGA............................................................................................................................................................................................................. 25 0 20 0.45 9 0 9 0 0 0 0
...........................................................CTTTGCTGTTGACTTTATGCTATAA....................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
..........................................................TCTTTGCTGTTGACTTTATGCTATAA....................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
.......................TGCATCCATCGTTGGGCCCAAGATGACG........................................................................................................................................................................................................ 28 0 20 0.25 5 5 0 0 0 0 0
...............................................................................................................GACGGATCGTTCGTTCGAGG........................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
................................................................................................................ACGGATCGTTCGTTCGAGG........................................................................................................................ 19 3 10 0.20 2 0 0 0 0 2 0
...........................TCCATCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................... 28 0 20 0.20 4 4 0 0 0 0 0
..........................................................................................................................................................................................TTATGGTGGGAGGGGATAC.............................................. 19 2 6 0.17 1 0 0 0 1 0 0
.....................TCTGCATCCATCGTTGGGCCCAAG.............................................................................................................................................................................................................. 24 0 20 0.15 3 2 1 0 0 0 0
.....................TCTGCATCCATCGTTGGGCCCAAGAT............................................................................................................................................................................................................ 26 0 20 0.15 3 1 2 0 0 0 0
...........................TCCATCGTTGGGCCCAAGATGACGTA...................................................................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0
..........................................................................................................................................................................................TTACGGTGGGATTAGATACT............................................. 20 3 7 0.14 1 0 0 0 1 0 0
.....................................................................................................................................................................................TATTATTATTGTGGGAGGC................................................... 19 2 7 0.14 1 0 1 0 0 0 0
...............................................................................................................GACGGATCTCGCCTTCGA.......................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0
................................................................................................ATGGGGGGTGGACCTGACGG....................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0
.............................................................................................................................TTGAGGGAGGATTGGTTTGC.......................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
.......................TGCATCCATCGTTGGGCCCAAGAT............................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
.........................CATCCATCGTTGGGCCCAAGATGACG........................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0 0 0
.......................TGCATCCATCGTTGGGCCCAA............................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCC................................................................................................................................................................................................................. 22 0 20 0.10 2 0 2 0 0 0 0
.......................TGCATCCAGCGTTGGGCCCAAGATGACG........................................................................................................................................................................................................ 28 1 20 0.10 2 2 0 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCCAA............................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
........................GCATCCATCGTTGGGCCCAAGATG........................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................................................................................GCTATCGAGTTTCGCCGTGGAAATTAT........ 27 1 11 0.09 1 1 0 0 0 0 0
...............................................................................................................GACGGATCGTTCGTTCGAG......................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0
................................................................................................................................................................................................................TAGGTGCTGATATCGAGGT........................ 19 3 13 0.08 1 0 0 0 0 0 1
..............................................................................................................................................TGCTTAGAGACTAAATTTAAA........................................................................................ 21 0 17 0.06 1 0 1 0 0 0 0
.........................CATCCATCGTTGGGCCCAAGATGAC......................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
..............................CTCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.....................TCTGCATCCATCGTTGGGCCC................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCCAAG.............................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0
...............................TCGTTGGGCCCAAGATGACGTAGGT................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................ATACACGGCGGAGAAGACC............................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0
.............................CATCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
............................CCATCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..............................................TGACGTAGGTGATCTTTGCTGTGGACTTT................................................................................................................................................................................ 29 1 20 0.05 1 1 0 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCCAAGA............................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
.......................TGCATCCAGCGTTGGGCCCAAGAT............................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
..............................ATCGTTGGGCCCAAGATGACGTAGGTG.................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
.......................TGCATCCATCGTTGGGCCCAAG.............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
....................TTCTGCATGCATCGTTGGGCCCAAG.............................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.....................TCTGCATCCATCGTTGGGC................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...................................................TAGGTGATCTTTGCTGTT...................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0
....................TTCTGCATCCATCGTTGGGCC.................................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCCAAGT............................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.....................TCTGCATCCATCGTTGGGCCCAAGATGAC......................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................TTCTGGTGGGAGGGGATAC.............................................. 19 3 20 0.05 1 0 0 0 0 1 0
...............................................................................AATATGAGAAACATACAATG........................................................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0 0
......................CTGCATCCATCGTTGGGCCCAAGA............................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCCA................................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0
..................................TTGGGCCCAAGATGACGTAGGTGATCT.............................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
.......................TGCATCCAGCGTTGGGCCCAAGATGA.......................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................ACCAGGGGGATCTCTCTTT............................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
...........................................................................................ATACAACGGGGAGACCAC.............................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0
....................TTCTGCATCCATCGTTGGGCCCAAGATG........................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
...............................TCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0
...........................TCCATCGTTGGGCCCAAGATGACG........................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
..............................CTCGTTGGGCCCAAGATGATGTAGGT................................................................................................................................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0
.......................TGCATCCATCGTTGGGCCCAAGATGACGT....................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

ATGAGTGAGTCGAAATGGTTAAGACGTAGGTAGCAACCCGGGTTCTACTGCATCCACTAGAAACGACAACTGAAATACGATATTCTCTTAGTATGTTACCCCTCTTCTGGACTGCCTAGAGAGAAAGCTCCGACCTAACCAAACGAATCTCTGATTTAAATTTCTATTCCAGGATGAAATGATAATAATACCACCCTCAGCTATGATTAACCGCGACGATAGCTCCAAGCGGCACCTTTAATAACAATACC
*********************************************************************************************************.............((.(((((...(((.((((......)))))))....))))).))***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M058
embryo
 M044
female body
 V105
male body		 V039
embryo
...............................................................................................................................................................................................................TAACCGCGACGATAGCTTCAA....................... 21 1 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................TATGATTAACCGCGACGATAGCTCC......................... 25 0 1 1.00 1 0 0 1 0 0
........GTCGGAATAGTTATGACGTAGGT............................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0
...........GCAATGGTTAAGACGTAGAT............................................................................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................CGCGACGATAGCTCCAAGCGGCACC............... 25 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................TGATTAACCGCGACGATAGCTCCA........................ 24 0 1 1.00 1 0 0 1 0 0
.........CCGAAATGGTCAAGACGCAGGT............................................................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0
...........GGAATGGTTAAGAGGTAGGT............................................................................................................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0
..........CGAAATAGTCAAGACGGAGGT............................................................................................................................................................................................................................ 21 3 5 0.20 1 1 0 0 0 0
...........GAGATAGTTAAGACGCAGGT............................................................................................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0
..........................................................................................................................................................................AGGATGAAATAATAATAGTA............................................................. 20 2 7 0.14 1 0 0 0 1 0
..............................................................................................................................................................................................CCACCCGCAGCAATGTTTAA......................................... 20 3 9 0.11 1 0 1 0 0 0
...........GACATGGTTAAGACGGTGGT............................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 1 0 0
...........GAAATGGTCAAGAAGCAGGT............................................................................................................................................................................................................................ 20 3 17 0.06 1 1 0 0 0 0
........................CGTAGGTAGCAACCCGGGTTCTA............................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................CCGACCGAACCAGACGAATA...................................................................................................... 20 3 20 0.05 1 0 0 0 0 1
.....................................CCGGGTTCTACTGCATCCACTAG............................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
..........................................TTCTACTGCATCCACTAGAAACGACA....................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1
.............................................TACTGCATCCACTAGAAACGACAA...................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13137:188618-188868 + dan_1418 TACTCACTCAGCTTTACCAATTCTGCATCCATCGTTGGGCCCAAGATGACGTAGGTGATCTTTGCTGTTGACTTTATGCTATAAGAGAAT-CATACAATGGGGAGAAGACCTGACGGATCTCTCTTTCGAGGCTGGATTGGTTTGCTTA-GAGACTAAATTTAAAGATAAGGTCCTACTTTACTATTATTATGGTGGGAGTCGATACTAATTGGCGCTGCTATCGAGGTTCGCCGTGG-----------------------------------AAATT-------ATTGTTA-TGG
droBip1 scf7180000396410:2645-2920 - TACTCGCTCAGCTTTGCCGACTCTGCATCGATTTTTGGGCCCAAAAGGATG-AGGTGATTTTCGCTGTTA--TTTATTAAAAAAGAGAAGGGATACAGCTA-GAAAATACCTGAATGATCTCTCTTTCGAGACTAAGTTGGTTTGCTTATGAAACTAAACTTA-AGCTAAGTTCCTATGCTA-------------AATATTCCATACTCCTTAGAGTTTACATTT--GTGCGATATTAAGAAAATTAAGAATTTATAATATTAAAATAAGGGAAAATTATACGTAATTTTAATTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TACTCACTCAGCTTTACCAATTCTGCATCCATCGTTGGGCCCAAGATGACGTAGGTGATCTTTGCTGTTGACTTTATGCTATAAGAGAAT-CATACAATGGGGAGAAGACCTGACGGATCTCTCTTTCGAGGCTGGATTGGTTTGCTTA-GAGACTAAATTTAAAGATAAGGTCCTACTTTACTATTATTATGGTGGGAGTCGATACTAATTGGCGCTGCTATCGAGGTTCGCCGTGG-----------------------------------AAATT-------ATTGTTA-TGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................CTCTTTCGAGGCTGGATTGGTTTGCT.....................................................................................................................................................2611.001100000
.................CAATTCTGCATCCATCGTTGGGCCCAA............................................................................................................................................................................................................................................................2711.001100000
.........................................................................................T-CATACAATGGGGAGAAGACCTGAC.....................................................................................................................................................................................2511.001100000
.............TTACCAATTCTGCATCCATCGTTGGGCC...............................................................................................................................................................................................................................................................2811.001100000
.............................................................................................TACAATGGGGAGAAGACCTGACGGA..................................................................................................................................................................................2511.001100000
......................................................................................................................TCTCTCTTTCGAGGCTGGATTGGTC.........................................................................................................................................................2511.001010000
.......................TGCATCCATCGTTGGGCCCAAGATG........................................................................................................................................................................................................................................................25200.5511821000
.....................TCTGCATCCATCGTTGGGCCCAAGA..........................................................................................................................................................................................................................................................25200.459090000
...........................................................CTTTGCTGTTGACTTTATGCTATAA....................................................................................................................................................................................................................2530.331100000
..........................................................TCTTTGCTGTTGACTTTATGCTATAA....................................................................................................................................................................................................................2630.331100000
.......................TGCATCCATCGTTGGGCCCAAGATGACG.....................................................................................................................................................................................................................................................28200.255500000
...........................TCCATCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................................................................28200.204400000
.....................TCTGCATCCATCGTTGGGCCCAAG...........................................................................................................................................................................................................................................................24200.153210000
.....................TCTGCATCCATCGTTGGGCCCAAGAT.........................................................................................................................................................................................................................................................26200.153120000
...........................TCCATCGTTGGGCCCAAGATGACGTA...................................................................................................................................................................................................................................................26200.153300000
.......................TGCATCCATCGTTGGGCCCAAGAT.........................................................................................................................................................................................................................................................24200.102200000
.........................CATCCATCGTTGGGCCCAAGATGACG.....................................................................................................................................................................................................................................................26200.102200000
.......................TGCATCCATCGTTGGGCCCAA............................................................................................................................................................................................................................................................21200.102200000
....................TTCTGCATCCATCGTTGGGCCC..............................................................................................................................................................................................................................................................22200.102020000
....................TTCTGCATCCATCGTTGGGCCCAA............................................................................................................................................................................................................................................................24200.102200000
........................GCATCCATCGTTGGGCCCAAGATG........................................................................................................................................................................................................................................................24200.102200000
...............................................................................................................................................TGCTTA-GAGACTAAATTTAAA...................................................................................................................................21170.061010000
.........................CATCCATCGTTGGGCCCAAGATGAC......................................................................................................................................................................................................................................................25200.051010000
.....................TCTGCATCCATCGTTGGGCCC..............................................................................................................................................................................................................................................................21200.051010000
....................TTCTGCATCCATCGTTGGGCCCAAG...........................................................................................................................................................................................................................................................25200.051001000
...............................TCGTTGGGCCCAAGATGACGTAGGT................................................................................................................................................................................................................................................25200.051100000
.............................CATCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................................................................26200.051100000
............................CCATCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................................................................27200.051100000
....................TTCTGCATCCATCGTTGGGCCCAAGA..........................................................................................................................................................................................................................................................26200.051010000
..............................ATCGTTGGGCCCAAGATGACGTAGGTG...............................................................................................................................................................................................................................................27200.051100000
.......................TGCATCCATCGTTGGGCCCAAG...........................................................................................................................................................................................................................................................22200.051100000
.....................TCTGCATCCATCGTTGGGC................................................................................................................................................................................................................................................................19200.051100000
...................................................TAGGTGATCTTTGCTGTT...................................................................................................................................................................................................................................18200.051010000
....................TTCTGCATCCATCGTTGGGCC...............................................................................................................................................................................................................................................................21200.051010000
....................TTCTGCATCCATCGTTGGGCCCAAGT..........................................................................................................................................................................................................................................................26200.051100000
.....................TCTGCATCCATCGTTGGGCCCAAGATGAC......................................................................................................................................................................................................................................................29200.051100000
......................CTGCATCCATCGTTGGGCCCAAGA..........................................................................................................................................................................................................................................................24200.051100000
....................TTCTGCATCCATCGTTGGGCCCA.............................................................................................................................................................................................................................................................23200.051010000
..................................TTGGGCCCAAGATGACGTAGGTGATCT...........................................................................................................................................................................................................................................27200.051100000
....................TTCTGCATCCATCGTTGGGCCCAAGATG........................................................................................................................................................................................................................................................28200.051001000
...............................TCGTTGGGCCCAAGATGACGTAGG.................................................................................................................................................................................................................................................24200.051001000
...........................TCCATCGTTGGGCCCAAGATGACG.....................................................................................................................................................................................................................................................24200.051010000
.......................TGCATCCATCGTTGGGCCCAAGATGACGT....................................................................................................................................................................................................................................................29200.051100000
droBip1
TACTCGCTCAGCTTTGCCGACTCTGCATCGATTTTTGGGCCCAAAAGGATG-AGGTGATTTTCGCTGTTA--TTTATTAAAAAAGAGAAGGGATACAGCTA-GAAAATACCTGAATGATCTCTCTTTCGAGACTAAGTTGGTTTGCTTATGAAACTAAACTTA-AGCTAAGTTCCTATGCTA-------------AATATTCCATACTCCTTAGAGTTTACATTT--GTGCGATATTAAGAAAATTAAGAATTTATAATATTAAAATAAGGGAAAATTATACGTAATTTTAATTAGSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 01:31 AM