ID:

dan_14

Coordinate:

scaffold_13340:13021692-13021752 -

Confidence:

Known Ortholog

Class:

Canonical miRNA

Genomic Locale:

intron

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.7 -41.7 -41.2

Flybase annnotation

intron [Dana\GF16690-in]; utr5 [utr5_plus_11464]

No Repeatable elements found

Sense Strand Reads

CGAGCATCCTTTAAGTGTCCTTGACAAATGTCATTCGCCTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCGCCGTTCTTTCTATCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCATCATCCTGTTGGCTGACACAAGAAATTCGCCAAAAGT

***********************************..(((((.(((((.((((.(((((.(((((..((((((..............)))))).))))).))))))))).))))).)))))....************************************
Read size # Mismatch Hit Count Total Norm Total M058

embryo

M044

female body

V106

head

V055

head

V105

male body
V039

embryo

.........................................................................................TAGCACCACATGATTCGGCTT................................................... 21 0 1 113852.00 113852 91641 16244 1516 1770 1496 1185
.........................................................................................TAGCACCACATGATTCGGCT.................................................... 20 0 1 9417.00 9417 6871 1016 874 250 138 268
.........................................................................................TAGCACCACATGATTCGGCTC................................................... 21 1 1 6196.00 6196 6166 8 5 4 6 7
.........................................................................................TACCACCACATGATTCGGCTT................................................... 21 1 1 4597.00 4597 4573 12 1 4 3 4
.........................................................................................TAGCACCACATGATTCGGCTTT.................................................. 22 1 1 4527.00 4527 3443 621 182 194 41 46
.........................................................................................TAGTACCACATGATTCGGCTT................................................... 21 1 1 3458.00 3458 3450 5 2 0 0 1
.........................................................................................TAGCACCACATGATTCGGCTTA.................................................. 22 1 1 2851.00 2851 2665 108 17 21 4 36
.........................................................................................TGGCACCACATGATTCGGCTT................................................... 21 1 1 2583.00 2583 2568 11 0 1 2 1
.........................................................................................TAGCACCACATGATTCGGCC.................................................... 20 1 1 1624.00 1624 1622 1 0 1 0 0
.........................................................................................TAGCACCACATGATTCGGCTA................................................... 21 1 1 1591.00 1591 1478 43 17 0 16 37
.........................................................................................TAGCACCACATGATTCGGCTTAA................................................. 23 2 1 1040.00 1040 980 48 2 0 0 10
..........................................................................................AGCACCACATGATTCGGCTT................................................... 20 0 1 873.00 873 98 774 0 0 0 1
.........................................................................................TAGCACCACATGATTCGGCTG................................................... 21 1 1 766.00 766 496 186 8 8 13 55
.........................................................................................TAGCACCACATGATTCGGC..................................................... 19 0 1 722.00 722 410 154 121 19 2 16
.........................................................................................TAGCACCAGATGATTCGGCTT................................................... 21 1 1 688.00 688 8 680 0 0 0 0
.........................................................................................TTGCACCACATGATTCGGCTT................................................... 21 1 1 660.00 660 659 0 0 0 0 1
.........................................................................................TAGCACCACATGATTCGGCTTC.................................................. 22 0 1 496.00 496 470 10 1 7 2 6
.........................................................................................TAGCACCAAATGATTCGGCTT................................................... 21 1 1 397.00 397 109 283 1 2 2 0
.........................................................................................TAGCACCCCATGATTCGGCTT................................................... 21 1 1 389.00 389 386 1 0 1 0 1
.........................................................................................GAGCACCACATGATTCGGCTT................................................... 21 1 1 380.00 380 322 42 0 12 3 1
.........................................................................................TAGCACCACATGCTTCGGCTT................................................... 21 1 1 356.00 356 331 0 0 8 6 11
.........................................................................................TACCACCACATGATTCGGCT.................................................... 20 1 1 351.00 351 349 0 1 0 1 0
.........................................................................................CAGCACCACATGATTCGGCTT................................................... 21 1 1 338.00 338 313 16 0 6 1 2
.........................................................................................TACCACCACATGATTCGGCTC................................................... 21 2 1 301.00 301 301 0 0 0 0 0
.........................................................................................TAGCACCACATGATTTGGCTT................................................... 21 1 1 284.00 284 277 3 0 1 1 2
.........................................................................................TAGTACCACATGATTCGGCT.................................................... 20 1 1 272.00 272 272 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTTT................................................. 23 2 1 271.00 271 155 64 14 31 6 1
........................................................................................CTAGCACCACATGATTCGGCTT................................................... 22 1 1 263.00 263 232 19 0 8 2 2
.........................................................................................TAGTACCACATGATTCGGCTC................................................... 21 2 1 254.00 254 254 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTTA................................................. 23 2 1 249.00 249 230 11 1 3 1 3
.........................................................................................AAGCACCACATGATTCGGCTT................................................... 21 1 1 245.00 245 223 15 0 6 1 0
..................................................GCCCGGATTCTGTGGGAGCTGCG........................................................................................ 23 0 1 215.00 215 42 96 32 12 31 2
.........................................................................................TAGCACCACATGATTCGGCTTG.................................................. 22 1 1 202.00 202 85 30 54 25 4 4
.........................................................................................TAGCACCACATGATTCGGCTTAAA................................................ 24 3 1 188.00 188 167 16 0 0 0 5
.........................................................................................TACCACCACATGATTCGGCTTT.................................................. 22 2 1 181.00 181 181 0 0 0 0 0
.........................................................................................TACTACCACATGATTCGGCTT................................................... 21 2 1 175.00 175 175 0 0 0 0 0
.........................................................................................TGGCACCACATGATTCGGCT.................................................... 20 1 1 168.00 168 165 2 0 0 0 1
.........................................................................................TAGCACCATATGATTCGGCTT................................................... 21 1 1 165.00 165 23 131 2 3 5 1
.........................................................................................TAGCAGCACATGATTCGGCTT................................................... 21 1 1 165.00 165 160 0 1 2 0 2
..................................................GCCCGGATTCTGTGGGAGCTGC......................................................................................... 22 0 1 150.00 150 41 27 56 8 9 9
.........................................................................................TAGCACCACATGATTCGGCCT................................................... 21 1 1 144.00 144 130 7 2 2 0 3
.........................................................................................TAGTACCACATGATTCGGCTTT.................................................. 22 2 1 141.00 141 140 1 0 0 0 0
.........................................................................................TATCACCACATGATTCGGCTT................................................... 21 1 1 136.00 136 60 18 34 3 16 5
.........................................................................................TACCACCACATGATTCGGCTTA.................................................. 22 2 1 136.00 136 136 0 0 0 0 0
.........................................................................................TAGCTCCACATGATTCGGCTT................................................... 21 1 1 128.00 128 125 0 0 2 0 1
..................................................GCCCGGATTCTGTGGGAGCTG.......................................................................................... 21 0 1 128.00 128 65 33 15 7 5 3
.........................................................................................TAGCACCACATGATTCGG...................................................... 18 0 1 120.00 120 23 41 37 13 1 5
.........................................................................................TGGCACCACATGATTCGGCTC................................................... 21 2 2 112.50 225 225 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGCTTA.................................................. 22 2 1 112.00 112 112 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCA.................................................... 20 1 1 98.00 98 82 5 3 1 0 7
.........................................................................................TAGCACCACATGATTCGTCTT................................................... 21 1 1 95.00 95 55 4 19 3 7 7
.........................................................................................TGGCACCACATGATTCGGCTTT.................................................. 22 2 1 91.00 91 91 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCTGCTT................................................... 21 1 1 90.00 90 52 1 7 9 2 19
.........................................................................................TAGCACCACATGATTCGGTTT................................................... 21 1 1 78.00 78 72 6 0 0 0 0
.........................................................................................TACCACCACATGCTTCGGCTT................................................... 21 2 1 75.00 75 75 0 0 0 0 0
.........................................................................................TAGCATCACATGATTCGGCTT................................................... 21 1 1 69.00 69 64 4 0 0 0 1
.........................................................................................TGGCACCACATGATTCGGCTTA.................................................. 22 2 1 69.00 69 68 1 0 0 0 0
.........................................................................................TACCACCACATGATTCGGCC.................................................... 20 2 1 68.00 68 68 0 0 0 0 0
.........................................................................................TAGCACTACATGATTCGGCTT................................................... 21 1 1 68.00 68 58 5 1 2 0 2
.........................................................................................TAGCACCACTTGATTCGGCTT................................................... 21 1 1 67.00 67 62 1 0 3 1 0
.........................................................................................TAGCACCACATAATTCGGCTT................................................... 21 1 1 65.00 65 51 2 0 1 6 5
.........................................................................................TAGTACCACATGATTCGGCTA................................................... 21 2 1 64.00 64 64 0 0 0 0 0
........................................................................................CGAGCACCACATGATTCGGCTT................................................... 22 2 1 63.00 63 63 0 0 0 0 0
.........................................................................................TACCACCACATGATTCGGCTA................................................... 21 2 1 63.00 63 63 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGCC.................................................... 20 2 1 62.00 62 62 0 0 0 0 0
.........................................................................................TAGCGCCACATGATTCGGCTT................................................... 21 1 1 60.00 60 42 9 3 2 2 2
.........................................................................................TAGCACCACATGATTCGGCTAA.................................................. 22 2 1 59.00 59 55 3 0 0 0 1
.........................................................................................TAACACCACATGATTCGGCTT................................................... 21 1 1 58.00 58 47 5 0 2 3 1
.........................................................................................TAGCACCACATGATTCGGCAA................................................... 21 2 1 58.00 58 54 3 0 0 0 1
.........................................................................................TAGCACCACATCATTCGGCTT................................................... 21 1 1 56.00 56 41 3 1 6 3 2
.........................................................................................TAGCACCACGTGATTCGGCTT................................................... 21 1 1 56.00 56 45 5 3 2 0 1
.........................................................................................TAGCACCACACGATTCGGCTT................................................... 21 1 1 56.00 56 34 6 3 2 8 3
.........................................................................................TAGCACCACATGATTCAGCTT................................................... 21 1 1 55.00 55 41 5 2 2 0 5
.........................................................................................TTGCACCACATGATTCGGCT.................................................... 20 1 1 55.00 55 55 0 0 0 0 0
...........................................................................................GCACCACATGATTCGGCTT................................................... 19 0 1 54.00 54 29 24 1 0 0 0
...................................................CCCGGATTCTGTGGGAGCTGCG........................................................................................ 22 0 1 54.00 54 15 24 8 3 4 0
.........................................................................................TAGCACGACATGATTCGGCTT................................................... 21 1 1 53.00 53 51 0 0 1 1 0
.........................................................................................TTGCACCACATGATTCGGCTC................................................... 21 2 1 52.00 52 52 0 0 0 0 0
.........................................................................................TAGCACCGCATGATTCGGCTT................................................... 21 1 1 51.00 51 37 6 1 3 1 3
.........................................................................................TAGCACCACATGACTCGGCTT................................................... 21 1 1 50.00 50 44 0 1 2 0 3
.........................................................................................TAGCACCACATGATTCGGCTTTAA................................................ 24 3 1 48.00 48 45 3 0 0 0 0
.........................................................................................TGGTACCACATGATTCGGCTT................................................... 21 2 1 45.00 45 45 0 0 0 0 0
.........................................................................................TACCACCACATGATTCGGCTTAA................................................. 23 3 1 45.00 45 45 0 0 0 0 0
.........................................................................................TAGCACCCCATGATTCTGCTT................................................... 21 2 1 45.00 45 44 0 0 0 0 1
..........................................................................................AGCACCACATGATTCGGCT.................................................... 19 0 1 45.00 45 6 39 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCGT................................................... 21 1 1 43.00 43 37 3 0 3 0 0
.........................................................................................TAGCACCACATGATTCGACTT................................................... 21 1 1 41.00 41 29 3 1 3 4 1
.........................................................................................TAGCACCAGATGATTCGGCT.................................................... 20 1 1 41.00 41 1 40 0 0 0 0
.........................................................................................TACCACCCCATGATTCGGCTT................................................... 21 2 1 41.00 41 41 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGCTTAA................................................. 23 3 1 40.00 40 40 0 0 0 0 0
.........................................................................................TAGCACCAAATGATTCGGCT.................................................... 20 1 1 38.00 38 11 26 1 0 0 0
.........................................................................................TAGCACCACATGATTCGGATT................................................... 21 1 1 38.00 38 8 0 18 3 8 1
........................................................................................GTAGCACCACATGATTCGGCTT................................................... 22 0 1 38.00 38 2 34 2 0 0 0
..........................................................................................AGCACCACATGATTCGGCTTT.................................................. 21 1 1 37.00 37 3 34 0 0 0 0
.........................................................................................TAGCACCACATGGTTCGGCTT................................................... 21 1 1 37.00 37 15 10 2 7 3 0
.........................................................................................TAGCACCACATGATTCGGCAT................................................... 21 1 1 37.00 37 37 0 0 0 0 0
.........................................................................................GAGCACCACATGATTCGGCT.................................................... 20 1 1 37.00 37 34 2 0 1 0 0
.........................................................................................TAGCACCACATGATCCGGCTT................................................... 21 1 1 36.00 36 18 5 4 7 2 0
.........................................................................................TAGTACCCCATGATTCGGCTT................................................... 21 2 1 36.00 36 36 0 0 0 0 0
..........................................................................................AGCACCACGTGATTCGGCTT................................................... 20 1 1 34.00 34 0 34 0 0 0 0
.........................................................................................TGGCACCACATGATTCGGCTTAA................................................. 23 3 1 34.00 34 34 0 0 0 0 0
.........................................................................................TAGCACCACATTATTCGGCTT................................................... 21 1 1 33.00 33 12 2 5 1 10 3
.........................................................................................TAGCACCAGATGATTCGGCTTT.................................................. 22 2 1 33.00 33 1 32 0 0 0 0
.........................................................................................TAGCACCACATGATTCGCCTT................................................... 21 1 1 32.00 32 15 7 0 3 1 6
.........................................................................................TGGCACCACATGATTCGGCTA................................................... 21 2 1 32.00 32 31 0 0 1 0 0
.........................................................................................TAGCACCACATGATTCGGCTTTG................................................. 23 1 1 31.00 31 11 7 8 4 0 1
.........................................................................................TAGCACCACATGATTCGGCTAAA................................................. 23 3 1 31.00 31 24 5 0 0 0 2
.........................................................................................TAGCACCCCATGATTCGGCT.................................................... 20 1 1 30.00 30 29 0 0 0 0 1
.........................................................................................TAGCACCACATGAGTCGGCTT................................................... 21 1 1 30.00 30 24 1 0 2 1 2
.........................................................................................TAGCACCACAAGATTCGGCTT................................................... 21 1 1 29.00 29 26 1 0 1 1 0
.........................................................................................TAGCACCACATGATTCGGCTGT.................................................. 22 2 1 29.00 29 21 5 0 2 0 1
.........................................................................................TAGCACCACATGATTAGGCTT................................................... 21 1 1 28.00 28 6 0 5 5 11 1
.........................................................................................TAGCACCACATGAATCGGCTT................................................... 21 1 1 28.00 28 23 1 0 1 3 0
..........................................................................................ATCACCACATGATTCGGCTT................................................... 20 1 1 28.00 28 27 1 0 0 0 0
.........................................................................................TATCACCACATGATTCGGCT.................................................... 20 1 1 27.00 27 5 1 20 0 0 1
.........................................................................................TAGCACCACATGCTTCGGCT.................................................... 20 1 1 27.00 27 18 0 1 3 2 3
.........................................................................................TAGCACAACATGATTCGGCTT................................................... 21 1 1 26.00 26 13 1 7 3 1 1
...................................................CCCGGATTCTGTGGGAGCTGC......................................................................................... 21 0 1 26.00 26 6 5 11 3 1 0
.........................................................................................TAGTACCACATGATTCGGCTG................................................... 21 2 1 25.00 25 25 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTAT................................................. 23 2 1 25.00 25 17 3 1 4 0 0
.........................................................................................TACCACCACATGATTCGGCTTC.................................................. 22 1 1 25.00 25 25 0 0 0 0 0
.........................................................................................TGGCACCACATGATTCGGCC.................................................... 20 2 3 24.00 72 72 0 0 0 0 0
.........................................................................................TAGCACCCCATGATTCGGCTC................................................... 21 2 1 23.00 23 23 0 0 0 0 0
........................................................................................TTAGCACCACATGATTCGGCTT................................................... 22 1 1 23.00 23 4 19 0 0 0 0
.........................................................................................TGCCACCACATGATTCGGCTT................................................... 21 2 1 22.00 22 22 0 0 0 0 0
.........................................................................................TAGCACCACATGATTTGGCT.................................................... 20 1 1 22.00 22 22 0 0 0 0 0
.........................................................................................TTGCACCACATGATTCGGCTTT.................................................. 22 2 1 21.00 21 21 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCCGCTT................................................... 21 1 1 21.00 21 4 0 1 7 0 9
.........................................................................................TAGCACCCCATGCTTCGGCTT................................................... 21 2 1 21.00 21 21 0 0 0 0 0
.........................................................................................TAGAACCACATGATTCGGCTT................................................... 21 1 1 21.00 21 2 1 9 6 2 1
.........................................................................................TGGCACCACATGATTCGGCTTC.................................................. 22 1 1 21.00 21 21 0 0 0 0 0
.........................................................................................CAGCACCACATGATTCGGCT.................................................... 20 1 1 21.00 21 19 0 1 0 0 1
.........................................................................................TAGCACCACATGATTCGGCTTTTT................................................ 24 2 1 21.00 21 4 12 2 3 0 0
.........................................................................................TAGCACCACATGATACGGCTT................................................... 21 1 1 21.00 21 15 1 1 3 1 0
.......................................................................................TCTAGCACCACATGATTCGGCTT................................................... 23 2 1 20.00 20 20 0 0 0 0 0
........................................................................................CTAGCACCACATGATTCGGCT.................................................... 21 1 1 20.00 20 19 1 0 0 0 0
.........................................................................................TAGCACCATATGATTCGGCT.................................................... 20 1 1 19.00 19 3 14 1 1 0 0
.........................................................................................CAGCACCACATGATTCGGCTC................................................... 21 2 1 19.00 19 19 0 0 0 0 0
.........................................................................................TAGCACCACATGCTTCGGCTC................................................... 21 2 1 19.00 19 19 0 0 0 0 0
.........................................................................................TAGCACCACATGATTTGGCTC................................................... 21 2 1 19.00 19 19 0 0 0 0 0
.........................................................................................GAGCACCACATGATTCGGCTC................................................... 21 2 1 19.00 19 18 0 0 1 0 0
.........................................................................................TTGTACCACATGATTCGGCTT................................................... 21 2 1 19.00 19 19 0 0 0 0 0
.........................................................................................AAGCACCACATGATTCGGCT.................................................... 20 1 1 19.00 19 17 1 0 1 0 0
.........................................................................................TAGCACCACATGATTCGGTT.................................................... 20 1 1 18.00 18 11 5 1 0 0 1
.........................................................................................CAGCACCACATGATTCGGCTTT.................................................. 22 2 1 18.00 18 16 1 0 1 0 0
.........................................................................................TAGCACCCCATGATTCGGCTTT.................................................. 22 2 1 18.00 18 17 0 0 1 0 0
.........................................................................................TACCACCACATGATTCGGCTG................................................... 21 2 1 17.00 17 17 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGCTTC.................................................. 22 1 1 17.00 17 17 0 0 0 0 0
.........................................................................................TACTACCACATGATTCGGCT.................................................... 20 2 1 17.00 17 17 0 0 0 0 0
.........................................................................................TAGCACCACATGCTTCGGCTG................................................... 21 2 1 16.00 16 16 0 0 0 0 0
.........................................................................................TAGCACCACCTGATTCGGCTT................................................... 21 1 1 16.00 16 5 1 0 4 1 5
.........................................................................................TAGTACGACATGATTCGGCTT................................................... 21 2 1 16.00 16 16 0 0 0 0 0
.........................................................................................TTGCACCACATGATTCGGCTTA.................................................. 22 2 1 16.00 16 16 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTAT.................................................. 22 2 1 16.00 16 9 3 3 0 1 0
.........................................................................................TAGCACCACATGTTTCGGCTT................................................... 21 1 1 16.00 16 2 0 0 9 4 1
.........................................................................................TAGCACCACATGATTCGTCT.................................................... 20 1 1 15.00 15 2 0 11 1 0 1
.........................................................................................TACCACCAAATGATTCGGCTT................................................... 21 2 1 15.00 15 14 0 1 0 0 0
.........................................................................................TAGCACCACATGATTTGGCTTT.................................................. 22 2 1 14.00 14 14 0 0 0 0 0
.........................................................................................TAGTACCACATGCTTCGGCTT................................................... 21 2 1 14.00 14 14 0 0 0 0 0
.........................................................................................GAGCACCACATGATTCGGCTTT.................................................. 22 2 1 14.00 14 11 3 0 0 0 0
.........................................................................................TAGCACCACAGGATTCGGCTT................................................... 21 1 1 14.00 14 2 2 0 8 1 1
.........................................................................................TAGCACCACATGATTCAGCT.................................................... 20 1 1 14.00 14 10 0 1 1 0 2
.........................................................................................TTGCACCACATGATTCGGCTA................................................... 21 2 1 14.00 14 14 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTAC................................................. 23 2 1 14.00 14 14 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGAT.................................................... 20 1 1 13.00 13 1 1 10 0 1 0
.........................................................................................TAGCACCACATGATGCGGCTT................................................... 21 1 1 13.00 13 2 0 0 10 0 1
.........................................................................................TAGCAGCACATGATTCGGCT.................................................... 20 1 1 13.00 13 12 0 0 0 0 1
.........................................................................................TAGCACCACATGCTTCGGCTTA.................................................. 22 2 1 12.00 12 12 0 0 0 0 0
.........................................................................................TAGCACCCCATGCTTCTGCTT................................................... 21 3 1 12.00 12 12 0 0 0 0 0
.........................................................................................TGGCACCACATGATTCGGCTG................................................... 21 2 1 12.00 12 12 0 0 0 0 0
.........................................................................................TACCACCACATGATTCGGCTTTT................................................. 23 3 1 12.00 12 12 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTTC................................................. 23 2 1 12.00 12 10 2 0 0 0 0
..................................................GCCCGGATTCTGTGGGAGCT........................................................................................... 20 0 1 12.00 12 9 2 0 0 1 0
.........................................................................................TAGCACCACATGCTTCGGCTTT.................................................. 22 2 1 12.00 12 11 0 1 0 0 0
.........................................................................................TCGCACCACATGATTCGGCTT................................................... 21 1 1 12.00 12 6 1 0 1 3 1
..........................................................................................AGCACCACATGATTCGGC..................................................... 18 0 1 11.00 11 1 10 0 0 0 0
.........................................................................................TAGCTCCACATGATTCGGCT.................................................... 20 1 1 11.00 11 11 0 0 0 0 0
...........................................................................................TCACCACATGATTCGGCTT................................................... 19 1 1 11.00 11 6 3 2 0 0 0
........................................................................................CTAGCACCACATGATTCGGCTTA.................................................. 23 2 1 11.00 11 11 0 0 0 0 0
.........................................................................................TAGCACCTCATGATTCGGCTT................................................... 21 1 1 11.00 11 8 1 0 2 0 0
.........................................................................................TACCACCACATGATTCGGCTTTA................................................. 23 3 1 11.00 11 11 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGACT.................................................... 20 1 1 11.00 11 5 1 2 0 1 2
........................................................................................CTAGCACCACATGATTCGGCTC................................................... 22 2 1 11.00 11 11 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCCC................................................... 21 2 1 11.00 11 11 0 0 0 0 0
.........................................................................................TACCACCACATGATTCGGC..................................................... 19 1 1 11.00 11 11 0 0 0 0 0
........................................................................................ATAGCACCACATGATTCGGCTT................................................... 22 1 1 10.00 10 3 7 0 0 0 0
.........................................................................................TAGTACCACATGATTTGGCTT................................................... 21 2 1 10.00 10 10 0 0 0 0 0
...................................................CCCGGATTCTGTGGGAGCTG.......................................................................................... 20 0 1 10.00 10 0 7 2 1 0 0
.........................................................................................TAGCACAACATGATTCGGCT.................................................... 20 1 1 10.00 10 4 1 0 4 1 0
.........................................................................................TAGCACCACATGATTCGGAC.................................................... 20 2 1 10.00 10 10 0 0 0 0 0
.........................................................................................TAGCACCACATGATTGGGCTT................................................... 21 1 1 10.00 10 7 0 0 1 2 0
.........................................................................................GAGCACCACATGATTCGGCTTA.................................................. 22 2 1 10.00 10 10 0 0 0 0 0
........................................................................................CTAGCACCACATGATTCGGCTTT.................................................. 23 2 1 10.00 10 10 0 0 0 0 0
.........................................................................................TAGCACCAAATGATTCGGCTTT.................................................. 22 2 1 10.00 10 4 6 0 0 0 0
.........................................................................................TAGCACCACATGATTCGAC..................................................... 19 1 1 10.00 10 10 0 0 0 0 0
..................................................GCCCGGATTCTGTGGGAGCTGCGT....................................................................................... 24 1 1 9.00 9 0 5 2 0 2 0
..................................................GCCCGGATTCTGTGGGAGCTGT......................................................................................... 22 1 1 9.00 9 4 2 1 1 1 0
.........................................................................................TACCACCACATCATTCGGCTT................................................... 21 2 1 9.00 9 8 0 0 0 0 1
........................................................................................CTAGCACCACATGATTCGGCC.................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTGC.................................................. 22 1 1 9.00 9 8 1 0 0 0 0
.........................................................................................CAGCACCACATGATTCGGCC.................................................... 20 2 1 9.00 9 9 0 0 0 0 0
..........................................................................................AGCACCACTTGATTCGGCTT................................................... 20 1 1 9.00 9 0 9 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTAG................................................. 23 1 1 8.00 8 4 3 0 0 1 0
.........................................................................................TAGCGCCACATGATTCGGCT.................................................... 20 1 1 8.00 8 2 2 2 0 0 2
......................................................................................ATCTAGCACCACATGATTCGGCTT................................................... 24 3 1 8.00 8 8 0 0 0 0 0
.........................................................................................CACCACCACATGATTCGGCTT................................................... 21 2 1 8.00 8 6 0 0 1 0 1
.........................................................................................TAGCACCACATGATTTGGTTT................................................... 21 2 1 8.00 8 8 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGT..................................................... 19 1 1 8.00 8 1 2 2 2 1 0
.........................................................................................TAGCACCACATGATTCGGCCTT.................................................. 22 2 1 8.00 8 6 2 0 0 0 0
.........................................................................................TAGCACCAAATGATTCGGCTTA.................................................. 22 2 1 8.00 8 6 1 0 1 0 0
.........................................................................................TAGCATCACATGATTCGGCT.................................................... 20 1 1 8.00 8 6 0 1 0 0 1
.........................................................................................TAGTACCACATGATTCGGCTTTA................................................. 23 3 1 8.00 8 8 0 0 0 0 0
.........................................................................................TAACACCACATGATTCGGCT.................................................... 20 1 1 8.00 8 7 1 0 0 0 0
.........................................................................................TAGTACCAAATGATTCGGCTT................................................... 21 2 1 8.00 8 8 0 0 0 0 0
.........................................................................................TAGCACCACATGCTTCGGCC.................................................... 20 2 1 8.00 8 8 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGTCTTT.................................................. 22 2 1 8.00 8 3 1 0 3 1 0
.........................................................................................TAGTACCACATGATTCGGC..................................................... 19 1 1 8.00 8 8 0 0 0 0 0
.........................................................................................TGGCACCACATGATTTGGCTT................................................... 21 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................TATCACCACATGATTCGGC..................................................... 19 1 1 7.00 7 2 0 5 0 0 0
.........................................................................................TAGCACCACATGATTCGCCTTT.................................................. 22 2 1 7.00 7 2 1 0 4 0 0
.........................................................................................TTGCACCACATGATTCGGCTTAA................................................. 23 3 1 7.00 7 7 0 0 0 0 0
..........................................................................................AGCACCACCTGATTCGGCTT................................................... 20 1 1 7.00 7 0 7 0 0 0 0
.........................................................................................TAGCACCACGTGATTCGGCT.................................................... 20 1 1 7.00 7 5 1 0 1 0 0
.........................................................................................TAGCACCACATGATTCGGGTT................................................... 21 1 1 7.00 7 3 0 1 0 0 3
.........................................................................................TAGCAGCACATGATTCGGCC.................................................... 20 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGCACGACATGATTCGGCT.................................................... 20 1 1 7.00 7 7 0 0 0 0 0
.........................................................................................TACTACCACATGATTCGGCTTA.................................................. 22 3 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGCCT................................................... 21 2 1 7.00 7 7 0 0 0 0 0
..................................................GCCCGGATTCTGTGGGAGCTGCAA....................................................................................... 24 2 1 7.00 7 5 2 0 0 0 0
.........................................................................................TATCACCACATGATTCGGCTC................................................... 21 2 1 7.00 7 5 0 2 0 0 0
.........................................................................................TAGCAACACATGATTCGGCTT................................................... 21 1 1 7.00 7 1 2 0 3 0 1
.........................................................................................TGGCACCCCATGATTCGGCTT................................................... 21 2 1 7.00 7 7 0 0 0 0 0
..................................................GCCCGGATTCTGTGGGAGC............................................................................................ 19 0 1 7.00 7 7 0 0 0 0 0
........................................................................................CTAGCACCACATGATTCGGCTTAA................................................. 24 3 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGCGCCACATGATTCGGCTC................................................... 21 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGCTTTT................................................. 23 3 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGCACCAGATGGTTCGGCTT................................................... 21 2 1 7.00 7 0 7 0 0 0 0
.........................................................................................TAGCAGCACATGATTCGGCTTT.................................................. 22 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................TGGCACCACATGATTCGGCTTTA................................................. 23 3 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCTTTTA................................................ 24 3 1 7.00 7 6 0 0 1 0 0
.........................................................................................TAGCACCACATGCTTCGTCTT................................................... 21 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................TATCACCACATGATTCGGCTTT.................................................. 22 2 1 7.00 7 2 0 4 0 1 0
.........................................................................................TAGCACCCCATGATTCGTCTT................................................... 21 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................GAGCACCACATGATTCGGCTA................................................... 21 2 1 7.00 7 7 0 0 0 0 0
.........................................................................................TAGCACCACATCATTCGGCT.................................................... 20 1 1 6.00 6 4 0 0 1 0 1
.........................................................................................TAGCACCACATCATTCGGCTC................................................... 21 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................AGCACCACATGATTCGGCTG................................................... 20 1 1 6.00 6 0 6 0 0 0 0
..........................................................................................AGCACCACATGATTCGGCTTA.................................................. 21 1 1 6.00 6 2 4 0 0 0 0
.........................................................................................TAGCACCCCATGATTCGGCTTA.................................................. 22 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGCACCAGATGATTCGGCTG................................................... 21 2 1 6.00 6 0 6 0 0 0 0
.........................................................................................TAGCACCACATGATTAGGCT.................................................... 20 1 1 6.00 6 2 0 1 3 0 0
.........................................................................................TGGCACCACATGATTCGGC..................................................... 19 1 1 6.00 6 6 0 0 0 0 0
.........................................................................................CAGCACCACATGATTCGGCTTA.................................................. 22 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................AGCACCACATGATTCGGCTC................................................... 20 1 1 6.00 6 6 0 0 0 0 0
..........................................................................................AGCACCACATGATTCGGCTTAA................................................. 22 2 1 6.00 6 3 3 0 0 0 0
.........................................................................................TAGCACCACATGATTTGGCTTA.................................................. 22 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TACCACCACATGATTCTGCTT................................................... 21 2 1 6.00 6 5 0 0 0 0 1
............................................................................................CACCACATGATTCGGCTT................................................... 18 0 1 6.00 6 3 3 0 0 0 0
.........................................................................................TACCACCACATGCTTCGGCT.................................................... 20 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGCATCACATGATTCGGCTC................................................... 21 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGCACCGCATGATTCGGCTC................................................... 21 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGCACGACATGATTCGGCTC................................................... 21 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TACCACCACATGATTCGTCTT................................................... 21 2 1 6.00 6 5 0 0 0 1 0
.........................................................................................TAGCACCACATGATTCCGCT.................................................... 20 1 1 6.00 6 1 0 1 0 0 4
..........................................................................................ATAACCACATGATTCGGCTT................................................... 20 2 1 6.00 6 6 0 0 0 0 0
..................................................GCCCGGATTCTGTGGGAGCTGCA........................................................................................ 23 1 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGTACCACATGATTCGGTTT................................................... 21 2 1 6.00 6 6 0 0 0 0 0
..................................................GGCCGGATTCTGTGGGAGCTG.......................................................................................... 21 1 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGCACCACATGCTTCTGCTT................................................... 21 2 1 6.00 6 6 0 0 0 0 0
.........................................................................................TACTACCACATGATTCGGCTTT.................................................. 22 3 1 6.00 6 6 0 0 0 0 0
.........................................................................................TAGCACCACATTATTCGGCT.................................................... 20 1 1 6.00 6 1 0 4 0 0 1
.........................................................................................TACCACCACATGCTTCGGCTTT.................................................. 22 3 1 6.00 6 6 0 0 0 0 0
...........................................................................................GCACCACATGATTCGGCTTT.................................................. 20 1 1 6.00 6 1 3 0 1 1 0
.........................................................................................TAGCACCACATGATTCGGA..................................................... 19 1 1 6.00 6 1 0 3 0 2 0
.........................................................................................AAGCACCACATGATTCGGCTTA.................................................. 22 2 1 6.00 6 5 0 0 0 0 1
.........................................................................................TTGCACCCCATGATTCGGCTT................................................... 21 2 2 6.00 12 12 0 0 0 0 0
.........................................................................................AAGCACCACATGATTCGGCTC................................................... 21 2 2 5.50 11 11 0 0 0 0 0
.........................................................................................TTGTACCACATGATTCGGCT.................................................... 20 2 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGAACCACATGATTCGGCT.................................................... 20 1 1 5.00 5 0 0 4 0 1 0
.........................................................................................TAGCACCACATGATACGGCT.................................................... 20 1 1 5.00 5 4 0 1 0 0 0
........................................................................................CTAGCACCACATGATTCGGCTA................................................... 22 2 1 5.00 5 5 0 0 0 0 0
.........................................................................................CAGCACCACATGATTCGGCTTAA................................................. 23 3 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGCACCACATGGTTCGGCT.................................................... 20 1 1 5.00 5 1 0 2 1 1 0
.........................................................................................TAGTACCACATGATTCGGCA.................................................... 20 2 1 5.00 5 5 0 0 0 0 0
...........................................................................................GCACCACATGATTCGGCT.................................................... 18 0 1 5.00 5 3 2 0 0 0 0
.........................................................................................TAGCACCACATCATTCGGCTTT.................................................. 22 2 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGCACCAGATGATTCGGCTTAA................................................. 23 3 1 5.00 5 0 5 0 0 0 0
.........................................................................................TAGCACCACATGATTCGTTTT................................................... 21 2 1 5.00 5 0 3 2 0 0 0
.........................................................................................TACCACCCCATGCTTCGGCTT................................................... 21 3 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGCCCCACATGATTCGGCTT................................................... 21 1 1 5.00 5 1 0 0 2 0 2
..........................................................................................AGCACCACATGATTCGGCTTG.................................................. 21 1 1 5.00 5 1 3 1 0 0 0
..................................................GCCCGGATTCTGTGGGAGCTGCGA....................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGCAGCACATGATTCGGCTTA.................................................. 22 2 1 5.00 5 5 0 0 0 0 0
........................................................................................CTATCACCACATGATTCGGCTT................................................... 22 2 1 5.00 5 5 0 0 0 0 0
...................................................CCCGGATTGTGTGGGAGCTGCG........................................................................................ 22 1 1 5.00 5 0 5 0 0 0 0
.........................................................................................TATCACCACATGATTCGTCTT................................................... 21 2 1 5.00 5 0 0 3 0 1 1
.........................................................................................TTGCACCACATGCTTCGGCTT................................................... 21 2 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCGGCG.................................................... 20 1 1 5.00 5 3 1 0 0 0 1
..........................................................................................TGCACCACATGATTCGGCTT................................................... 20 1 1 5.00 5 2 1 2 0 0 0
.........................................................................................GAGCACCACATGATTCGGCC.................................................... 20 2 1 5.00 5 5 0 0 0 0 0
.........................................................................................TAGCACCACATGATTCAGCTTT.................................................. 22 2 1 5.00 5 3 0 0 2 0 0

Anti-sense strand reads

GCTCGTAGGAAATTCACAGGAACTGTTTACAGTAAGCGGACAGGATGCGTCGGGCCTAAGACACCCTCGACGCGGCAAGAAAGATAGGCATCGTGGTGTACTAAGCCGAAGCACCACGTCCCGTAGTAGGACAACCGACTGTGTTCTTTAAGCGGTTTTCA

************************************..(((((.(((((.((((.(((((.(((((..((((((..............)))))).))))).))))))))).))))).)))))....***********************************
Read size # Mismatch Hit Count Total Norm Total M058

embryo

M044

female body

V055

head

...............................................CGTCGGGCTTAATACACCCTCGAC.......................................................................................... 24 2 1 1.00 1 0 1 0
...................................................................CCACGCGGCAAGAAAGAAAG.......................................................................... 20 2 1 1.00 1 1 0 0
.........................................................................................................CCGAAGCACCACGTAACGT..................................... 19 2 4 0.25 1 1 0 0
.....................................................................ACGAGGCAAGAAAGAACGGCA....................................................................... 21 3 4 0.25 1 0 1 0
.............................................................................................................................................TCTTCTTTAAGCGTTTTTCA 20 2 5 0.20 1 1 0 0
........GGAATTAACAGCAACTGTTT..................................................................................................................................... 20 3 10 0.10 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13340:13021642-13021802 - dan_14 confident CGAG--------C---ATCCTTTA---------AGT----GTCCTTGAC-AAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCGC----CGTTC-------------TTTCTA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT-----------------------CATCC---TGT---------------TGGCT------GACACAAGAAA-TT----CGCCAAAAGT
droBip1 scf7180000396691:1899363-1899529 - CAAG--------C---ATCCTTTA---------AGT----GTCCTTGAC-AAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGGGCTGCGC----CGTTT------TTTT--CTGGCTA----ACCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT-----------------------CATCT---TGT---------------AATTT------GTCAAAAGAAA-TT---CTCCAAACAAC
droKik1 scf7180000302307:196874-197038 - G--T--------C---ATCATTGG---------CGT----GCCCTCGGC-AAATGTTTTTCAC-----------------------------CTGCACCACGCAGCCCGGATTCTGTGGGGGCTGCGC----TGTTC------CCCTT-TCCGCCA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGCCAG-----------------------CATCCACGGAT-------------------C------GCCACCCGGAA-TT---ACCCGAAAAGT
droFic1 scf7180000453930:227824-227982 - AG-T-----CAGC---CTCCTGGA---------CGT----GTCTTTGGC-GAGTGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGAGCTGCGC----TGTTT------ATACT--CCAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGCGCAGGACAG-----------------------CATCG---GCTG----------T-------A------GCCATAAA--G-----CCTAC-----CC
droEle1 scf7180000491080:437422-437583 + TG-G--------C---ATCCTGGG---------CGT----GCCCTTGGC-GAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGGCGGCTGCGC----TGCTT------CTACT-ATCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG-----------------------CACCG---GATTGC-A-------------TA------GTCAG--A--G-T-----TACCAATGGT
droRho1 scf7180000779659:137851-138004 + TGTG--------T---ATACTGG------------C----GTCCTGGGC-GAATGTCCTTCGC-----------------------------CTGCACCCCGAAGCCCGGATTCTGTGGAGGCTGCGC----TGCTT------CTTTT-CTCAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG-----------------------CATCG---GCTTCC-A-------------AA------GC----------------CACCATTACA
droBia1 scf7180000302402:9398380-9398540 + CTGA--------C---ATCCTGGG---------CGT----GTCCTTGGT-GAATGTCAATCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTT------CTACCTCCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAG-----------------------CATCG---CGTG-CTCCAACTAC-------A------G-------------------CCAACAGA
droTak1 scf7180000415409:611539-611700 + CTAA--------C---ATCCTGGG---------CGT----GTCCTTGGC-GAATGTCACCCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGGGCTGCGC----TGTTT------CTGCC-GCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG-----------------------CATCT---AATCTCTA-------------CA------ACTAG--A--G-----TTTAC---TATC
droEug1 scf7180000409542:620330-620485 - CGT-------AGC---CTCCTGGG---------TGT----GTCCTTGGC-GAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTT------GTGAT-TCTAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGAGCAGGACAG-----------------------CATCA---GATT----------T---T--------------------C-----TCTTTTAAAACG
dm3 chr3R:16561616-16561759 + dme-mir-995 Known_mirbase TGGA--------C---ATAT---------------T----ATCCTTGAC-GAATGTCATCCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CCGTAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTACAGGATAT-----------------------CATCG---GTTT----------T---TGCTA------GCAAACGG------------------GT
droSim2 3r:4744565-4744708 - dsi-mir-995 Known_mirbase CAAG--------C---ATA---G-----------------------GAAGAAATGTCGTTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CCAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT-----------------------CATCG---GTTT----------T---TGCTA------GCCAGCCA--G-----TCCAC-----GA
droSec2 scaffold_27:174245-174389 - dse_20 confident CAAG--------C---ATG---G-----------------------GAG-AAATGTCGTTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CCGAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT-----------------------CATCG---GTTT----------T---TGCTA------GCCAGCGGGTA-----TCCAC-----GA
droYak3 3R:5351024-5351190 + dya_10 confident CTAT--------T---ATCCTGGA---------CGTTGCCATCCTGGAT-TAAACTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CTAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT-----------------------CAGCA---ATTT----------T---TGGTA------GCCAATCGTTA-----TCTACAATTACT
droEre2 scaffold_4770:5101874-5102036 - der_22 confident TTAT--------T---ATCTTGGA---------CGC----GTTCCTGAC-GAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----TGTTT-------------TCAGGA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT-----------------------CAGCG---GTTT----------T---TGCTA------GACAACGGTTA-----TCTACAATTACC
dp5 2:5900211-5900393 + dps-mir-995 Known_mirbase G-----------C---ATCCTGGCTGCTGACGCCGC----GTCCTTGAC-GAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGT----------T-CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC-----------------------CTTCA---GTATC--------------------------CAAGT-----------CGCATTCATT
droPer2 scaffold_19:1637027-1637212 + dpe_4 confident TATG--------C---ATCCTGGCTGCTGACGCCGT----GTCCTTGAC-GAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGT----------T-CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC-----------------------CTTCA---GTATC--------------------------CAAGT-----------CGCATTCATT
droWil2 scf2_1100000004921:2305149-2305346 - dwi_4 confident CCGG--------CATTACCTATGC---------CGT----GTCCTTGAC-GAATGTCAAATTT----TCTGACTCCTGCAACTCATGTAAGGCTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCGC----TACAA-------------CAAGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAAGTACATCGCAACGT---------------CATCG---TGT-------------------T------GAAGACTTAATCTT-AT---CCATAATA
droVir3 scaffold_13047:12148417-12148614 - dvi-mir-995 Known_mirbase GCAGCTGTGCGGC---ATCCTTGA-----------T----GTCCTTGAC-GAATGTCAAACGGCTTGGCCGGCTC-AACA-----------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCGC----TGTTT--------------AGAGG----TACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCAA------CTGCAACAGA--GGGCGTCAACG---GTAT----------T---TATTA-------ATATAGGCTA-----CGTAC-ATACGT
droMoj3 scaffold_6540:29636939-29637124 + dmo_11 confident TT--------------ATCCTTGA-----------T----GTCCTTGAC-GAATGTCAAACAGCTTGGCTGGCTT-GGTA-----------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCGC----TGTTT-------------T--GAG----TACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCTC------ATTCAACAAATTAGG---CATCA---ATTT----------TATAGATTAATACGTGCCAA-----T-----TCTAT-----AT
droGri2 scaffold_14830:1051284-1051458 + dgr_7 confident CAAT--------CGTTATCCCAGA-----------T----GTCCTTGAC-GAATGTCAAATG------------------------------CTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACAC--ATAAATA----TACGTAGCACCACATGATTCGGCTTCGTGGTGCTAGCAA------CTC---------------CATCG---CCAG-----------------TT------AGATAGATAAA-TCAATCAA-----GAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGAG--------C---ATCCTTTA---------AGT----GTCCTTGAC-AAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCGC----CGTTC-------------TTTCTA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT-----------------------CATCC---TGT---------------TGGCT------GACACAAGAAA-TT----CGCCAAAAGTSizeHit CountTotal NormTotalM044

Female-body
M058

Embryo
V039

Embryo
V055

Head
V105

Male-body
V106

Head
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211113852.0011385216244916411185177014961516
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2019417.00941710166871268250138874
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2116196.006196861667465
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................2214527.00452762134434619441182
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................2212851.00285110826653621417
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................2011624.001624116220100
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................2111591.0015914314783701617
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................2311040.0010404898010002
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................201873.00873774981000
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211766.00766186496558138
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191722.0072215441016192121
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................221496.00496104706721
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................231271.0027164155131614
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................231249.00249112303311
........................................................................................................GCCCGGATTCTGTGGGAGCTGCG.................................................................................................................................................................231215.0021596422123132
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................221202.002023085425454
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................241188.00188161675000
........................................................................................................GCCCGGATTCTGTGGGAGCTGC..................................................................................................................................................................221150.00150274198956
........................................................................................................GCCCGGATTCTGTGGGAGCTG...................................................................................................................................................................211128.00128336537515
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................181120.001204123513137
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................20198.00985827103
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................22159.00593551000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................21158.00583541000
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................19154.005424290001
.........................................................................................................CCCGGATTCTGTGGGAGCTGCG.................................................................................................................................................................22154.005424150348
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................24148.00483450000
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19145.00453960000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22138.00383420002
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21137.00373430000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................23131.00315242000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22129.00295211200
.........................................................................................................CCCGGATTCTGTGGGAGCTGC..................................................................................................................................................................21126.00265603111
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23125.00253170401
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................22116.0016390013
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................23114.00140140000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................23112.00122100000
........................................................................................................GCCCGGATTCTGTGGGAGCT....................................................................................................................................................................20112.0012290010
.....................................................................................................................................................................AGCACCACATGATTCGGC.........................................................................................................18111.00111010000
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................21111.00110110000
.........................................................................................................CCCGGATTCTGTGGGAGCTG...................................................................................................................................................................20110.0010700102
....................................................................................................................................................................TAGCACCACATGATTCGGAC........................................................................................................20110.00100100000
........................................................................................................GCCCGGATTCTGTGGGAGCTGCGT----............................................................................................................................................................2419.009500022
........................................................................................................GCCCGGATTCTGTGGGAGCTGT..................................................................................................................................................................2219.009240111
....................................................................................................................................................................TAGCACCACATGATTCGGT.........................................................................................................1918.008210212
........................................................................................................GCCCGGATTCTGTGGGAGCTGCAA----............................................................................................................................................................2417.007250000
........................................................................................................GCCCGGATTCTGTGGGAGC.....................................................................................................................................................................1917.007070000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTTA....................................................................................................2417.007060100
.....................................................................................................................................................................AGCACCACATGATTCGGCTG.......................................................................................................2016.006600000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................2116.006420000
.....................................................................................................................................................................AGCACCACATGATTCGGCTC.......................................................................................................2016.006060000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAA.....................................................................................................2216.006330000
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................1816.006330000
........................................................................................................GCCCGGATTCTGTGGGAGCTGCA.................................................................................................................................................................2316.006060000
......................................................................................................................................................................GCACCACATGATTCGGCTTT......................................................................................................2016.006310110
....................................................................................................................................................................TAGCACCACATGATTCGGA.........................................................................................................1916.006010023
......................................................................................................................................................................GCACCACATGATTCGGCT........................................................................................................1815.005230000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTG......................................................................................................2115.005310001
........................................................................................................GCCCGGATTCTGTGGGAGCTGCGA----............................................................................................................................................................2415.005050000
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................2015.005131000
droBip1
CAAG--------C---ATCCTTTA---------AGT----GTCCTTGAC-AAATGTCATTCGC-----------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGGGCTGCGC----CGTTT------TTTT--CTGGCTA----ACCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAT-----------------------CATCT---TGT---------------AATTT------GTCAAAAGAAA-TT---CTCCAAACAACSizeHit CountTotal NormTotal
No Reads
droKik1
G--T--------C---ATCATTGG---------CGT----GCCCTCGGC-AAATGTTTTTCAC-----------------------------CTGCACCACGCAGCCCGGATTCTGTGGGGGCTGCGC----TGTTC------CCCTT-TCCGCCA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGCCAG-----------------------CATCCACGGAT-------------------C------GCCACCCGGAA-TT---ACCCGAAAAGTSizeHit CountTotal NormTotal
No Reads
droFic1
AG-T-----CAGC---CTCCTGGA---------CGT----GTCTTTGGC-GAGTGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGAGCTGCGC----TGTTT------ATACT--CCAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGCGCAGGACAG-----------------------CATCG---GCTG----------T-------A------GCCATAAA--G-----CCTAC-----CCSizeHit CountTotal NormTotal
No Reads
droEle1
TG-G--------C---ATCCTGGG---------CGT----GCCCTTGGC-GAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGGCGGCTGCGC----TGCTT------CTACT-ATCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG-----------------------CACCG---GATTGC-A-------------TA------GTCAG--A--G-T-----TACCAATGGTSizeHit CountTotal NormTotal
No Reads
droRho1
TGTG--------T---ATACTGG------------C----GTCCTGGGC-GAATGTCCTTCGC-----------------------------CTGCACCCCGAAGCCCGGATTCTGTGGAGGCTGCGC----TGCTT------CTTTT-CTCAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG-----------------------CATCG---GCTTCC-A-------------AA------GC----------------CACCATTACASizeHit CountTotal NormTotal
No Reads
droBia1
CTGA--------C---ATCCTGGG---------CGT----GTCCTTGGT-GAATGTCAATCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTT------CTACCTCCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGGCAG-----------------------CATCG---CGTG-CTCCAACTAC-------A------G-------------------CCAACAGASizeHit CountTotal NormTotal
No Reads
droTak1
CTAA--------C---ATCCTGGG---------CGT----GTCCTTGGC-GAATGTCACCCAC-----------------------------CTGCACCCCGCAGCCCGGATTTTGTGGGGGCTGCGC----TGTTT------CTGCC-GCCAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAG-----------------------CATCT---AATCTCTA-------------CA------ACTAG--A--G-----TTTAC---TATCSizeHit CountTotal NormTotal
No Reads
droEug1
CGT-------AGC---CTCCTGGG---------TGT----GTCCTTGGC-GAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGGATTCTGTGAGGGCTGCGC----TGTTT------GTGAT-TCTAAAT----TCCGTAGCACCACATGATTCGGCTTCGTGGAGCAGGACAG-----------------------CATCA---GATT----------T---T--------------------C-----TCTTTTAAAACGSizeHit CountTotal NormTotal
No Reads
dm3
TGGA--------C---ATAT---------------T----ATCCTTGAC-GAATGTCATCCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CCGTAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTACAGGATAT-----------------------CATCG---GTTT----------T---TGCTA------GCAAACGG------------------GTSizeHit CountTotal NormTotalGSM154618

Ovary
GSM154620

Ovary
GSM154621

Ovary
GSM154622

Ovary
GSM180328

Head
GSM180329

Mixed-body
GSM180330

Embryo
GSM180331

Embryo
GSM180332

Embryo
GSM180333

Embryo
GSM180334

Larvae
GSM180335

Disc
GSM180336

Pupae
GSM180337

S2
GSM239041

Head
GSM239050

Head
GSM239051

S2
GSM239052

S2
GSM246084

Head
GSM266765

S2
GSM280082

Ovary
GSM280083

Ovary
GSM280084

Ovary
GSM280085

Testis
GSM280086

Ovary
GSM280087

S2-NP
GSM280088

S2-NP
GSM312995

Head
GSM313160

Head
GSM313161

Head
GSM313162

Head
GSM313163

Head
GSM313164

Head
GSM313165

Head
GSM343287

Embryo
GSM379050

Ovary
GSM379051

Ovary
GSM379052

Ovary
GSM379053

Ovary
GSM379054

Ovary
GSM379055

Ovary
GSM379056

Ovary
GSM379057

Ovary
GSM379058

Ovary
GSM379059

Ovary
GSM379060

Ovary
GSM379061

Ovary
GSM379062

Ovary
GSM379063

Ovary
GSM379064

Ovary
GSM379065

Ovary
GSM379066

Ovary
GSM379067

Ovary
GSM424739

S2
GSM424740

S2
GSM424741

S2
GSM467729

Female-body
GSM467730

Female-body
GSM467731

Female-body
M002

CS
M003

Male-body
M004

Male-body
M005

ML-DmD32
M006

ML-DmD32
M029

OSC
M030

OSC
M031

OSC
M032

S2-R+
M033

S2-R+
M034

S2-R+
M035

S2-R+
M036

S2-R+
M037

S2-R+
M038

S2-R+
M039

S2-R+
M048

S2-R+
OSS2

OSS
OSS6

OSS
OSS7

OSS
OSS8

OSS
S1

Head
S10

Embryo
S11

Embryo
S12

Embryo
S13

Embryo
S14

Embryo
S15

S2-GMR
S16

Kc
S17

Larvae
S18

Larvae
S19

Pupae
S2

Head
S20

Pupae
S21

Disc
S22

Head
S23

Female-body
S24

Male-body
S25

Larvae
S26

Larvae
S27

Pupae
S28

Pupae
S29

Head
S3

Male-body
S30

S2-GMR
S31

S2
S32

S2
S33

Kc
S34

Kc
S35

Kc
S4

Female-body
S5

Disc
S6

Embryo
S7

Embryo
S8

S2
S9

Embryo
SRR001337

Head
SRR001338

Head
SRR001339

Head
SRR001340

Head
SRR001341

Head
SRR001342

Head
SRR001343

Head
SRR001344

Head
SRR001345

Head
SRR001346

Head
SRR001347

Head
SRR001348

Head
SRR001349

Head
SRR001664

Head
SRR010951

Ovary
SRR010952

Ovary
SRR010953

Ovary
SRR010954

Ovary
SRR010955

Ovary
SRR010956

Ovary
SRR010957

Ovary
SRR010958

Ovary
SRR010959

Ovary
SRR010960

Ovary
SRR014268

Embryo
SRR014269

Embryo
SRR014270

Embryo
SRR014271

Embryo
SRR014272

Embryo
SRR014273

Ovary
SRR014274

Ovary
SRR014275

Ovary
SRR014276

Ovary
SRR014277

Ovary
SRR014278

Ovary
SRR014279

Ovary
SRR014280

Ovary
SRR014281

Ovary
SRR014282

Ovary
SRR023197

S2
SRR023399

S2
SRR023400

S2
SRR023402

S2
SRR023407

S2
SRR029028

S2
SRR029029

S2
SRR029030

S2
SRR029031

S2
SRR029032

S2
SRR029033

S2
SRR029608

Head
SRR029633

Head
SRR030145

gb3
SRR031692

Head
SRR031693

Head
SRR031694

Head
SRR031696

Head
SRR031697

Head
SRR031698

Head
SRR031699

Head
SRR031700

Head
SRR031701

Head
SRR031702

Head
SRR031703

Head
SRR031704

Head
SRR032092

S2
SRR032093

S2
SRR032094

S2
SRR032095

S2-NP
SRR032096

S2-NP
SRR032152

Head
SRR060643

Testis
SRR060644

Ovary
SRR060645

Testis
SRR060646

Ovary
SRR060647

Ovary
SRR060648

Ovary
SRR060649

Ovary
SRR060650

Testis
SRR060651

Ovary
SRR060652

Testis
SRR060653

Ovary
SRR065151

Ovary
SRR065152

Ovary
SRR065153

Ovary
SRR065154

Ovary
SRR065155

Ovary
SRR065800

Ovary
SRR065801

Ovary
SRR065802

Ovary
SRR065803

Ovary
SRR065804

Ovary
SRR065805

Ovary
SRR065806

Ovary
SRR065807

Ovary
SRR097865

S2-NP
SRR097866

S2-NP
SRR097867

S2-NP
SRR298536

Ovary
SRR298537

Ovary
SRR298711

Ovary
SRR298712

Ovary
SRR317110

Ovary
SRR317111

Ovary
SRR317112

Ovary
SRR317113

Ovary
SRR317114

Ovary
SRR317115

Ovary
SRR317116

Ovary
SRR317117

Ovary
SRR341115

S2
SRR341116

S2
SRR341117

S2
SRR341118

S2
SRR351332

Mixed-body
SRR351333

Mixed-body
T004

OSC
T005

CME-L1
V001

Embryo
V002

Embryo
V003

S2
V006

Female-body
V007

Head
V008

S2
V009

CME-L1
V010

ML-DmD20-C5
V011

Sg4
V012

Male-body
V013

Head
V014

DTT
V015

DreRFHV
V018

Kc167
V019

GM2
V020

S2-R+
V021

ML-DmD21
V022

ML-DmD32
V023

Head
V024

Kc167
V025

S2-R+
V026

1182-2H
V027

ML-DmD21
V028

CME-W1-Cl.8+
V029

ML-DmD9
V030

ML-DmD8
V031

GM2
V032

S1
V033

CME-W1-Cl.8+
V034

ML-DmD16-C3
V035

ML-DmD32
V036

ML-DmD20-C5
V037

S2
V038

S2
V063

Ovary
V0632

Ovary
V064

Ovary
V0642

Ovary
V065

Ovary
V0652

Ovary
V066

Ovary
V0662

Ovary
V067

S2-NP
V073

mbn2
V074

S3
V075

ML-DmBG1-C1
V076

ML-DmBG3-C2
V077

Head
V078

Head
V079

Head
V080

Head
V081

Embryo
V082

Embryo
V083

Male-body
V084

Female-body
V085

CME-W2
V086

Female-body
V088

Ovary
V0882

Ovary
V089

Ovary
V0892

Ovary
V090

Male-body
V091

fGS/OSS
V092

Male-body
V093

Male-body
V094

S2-R+
V095

S2-R+
V096

Ovary
V097

Ovary
V098

Ovary
V125

ML-DmD9
V126

CME-L1
V127

G2
V128

S3
V129

ML-DmBG1-C1
V130

ML-DmBG3-C2
V131

ML-DmD16-C3
V132

ML-DmD32
V133

Sg4
V134

ML-DmD8
V135

CME-W2
V136

Male-body
V137

Head
V138

Male-body
V139

Female-body
V140

Female-body
V141

Female-body
V142

Female-body
V144

OSC
V145

S2
V146

S1
V147

1182-2H
V148

mbn2
GSM1528798

follicle cells
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................2111759696.00175969600109929167263179773614142200955221167101695317696185899039163149175410898972730537245124743092205233032553873393615116372550104024714197518641052904705241141052227067000000000000000006312637851594170172256893722313356277632423310215941342331671568124312812812714591941187638524156128840961220151805252906161432510011931121549379916413231253259422396978202553296628232126980523059064680373837053863516535683043871225343747646275711344681675941427382017492153234620324191015696653864501208902128111813842150136923122383471255055833631691202012276147567781512751084132756209401101262164678020117439331210770363748152701584627564129683631611520612578842425564696865127509119927301762501002040247652698053138395492302593362746412090461348028112375286835343358338451050771127862163598459729051269381851183219585106536862482812090892771727310567115613130669130669635972078657131142259240681737163816492217205513759101915251007285218807586711427740680101725832805777662715052251440140658401190614834136861229140642312215981186232656514398160258645645612885714638213166972879151094311288216730
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................201226177.002261770000341012811211993286400141228122315316174831411457614411912652803442442962044138912981237722243624474982737121692792883000000000000000002742722541577152491201021182202147240162383551222021278944024398905921051316176011951031101200709825025341373214100020031615206617605083483484472492808618232662725236501103226167446047340110822008996425071128687130295107455337163214791355165299978307579340001682162214020009530140359180111855132184411731560457632266321621534376173164466351025342518721000184221129117101476406313517431325245638834725421426945777483447649545334415390224359414081746141610856492049154743235192163205276202003150421272141066322432603112532824161328172506383181151148419982846931624115761609469840221535650247013881347111343922112123172712791994172868559833071743337597117293086190938520
........................................................................................................GCCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................23166035.006603500002122314101040000003111000180300000226412513302935383041939911605148113800110000000000000000005239282825461373302696010672325062413135520124472031924545120341339311051226901110020301223057000012103088202192871113925522237123345150142175892110015232150108495033310160091726311113495313802161987240202525000002630020140281192103394278291193666146929641198256163276041500000724641013408387209193894632698217582118642722810753475324131255174669792464213221258425267769137413441876411234534126449419339730273946310214932583375261746873151044195418202713086320726271118454148366961544989731958261477624247148414364025326215381343852971
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................22155179.0055179000011974315293101300334660251717300000007405145415810156128302754305483149118432603000000000000000000000160160132985134851428521120193352134017351700263673430735266660711611792646946870631505013217040369610000021070221402781231698487140106871559180230105001003332231901812007588443073532248134217648115102111618829557014425114111582073584150000075171007000342202119298784901112371793733382511119926262691744111001931103122648419312749616511342620124319581931143435220522415292141150550197285459409324179322208970340413543316485366266633431980736634050672485615212531061717633399032849916192499811034450802296261194232534833012246362432919144285392393317455663644911380
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................22136273.003627300001013144002011002002969470126000000017524578545771285840159711731011135854210000000000000000000000011981171972842531583313407509824500462903249988820117938489501150403271619140001410100191631781121128375148667544263111340000046107262110288601110713112016445007248613036211341276002071854000019527250010041201979116292012776216171191589023612204919300192141953210749261376199394251818181462320273577594446245503994622375881164735594327565449864332219313762034241947514923178543941082313719872914833835124863962351043858606391227968195121391070
........................................................................................................GCCCGAATTATGTGGGAGCTGC..................................................................................................................................................................22124277.002427700000023210012000000780001310006101060438137961959438729224132531681072890032000000000000000000131248178124469876956615101281820001114010914524121923202132301933000000000000100000130110269244275264142841579415410918196132137100300009013106002000021060101003636132278360101171700000305101000043503328125026981513411516622860111165190212000010903615153147195132153149929828817757191317926118706675292111003418167133682481424360200925013462051115641711064241412631451671302813187634148508101513973779106580421246100921175337263538012210474433814335493046211534559
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................19120313.002031300000000000000541252300292321211518401195111222144028662877651412010433272751484760001151000000000000000007179574701152677002010141000000131424144621101533670001000042552531330000095441435410333332722275175596470030042114162792743012784301610311113931446443164121805533886234319720210144601000875022001025647178140334589401399810547235815811303931390000212123524224787981165881173269120546823556537840893971354226535103142188231841822025164493414230184906511321453146741671385405249693689844482478209856117931313624116275906671112391922526004591012720
........................................................................................................GCCCGAATTATGTGGGAGCTG...................................................................................................................................................................2118140.008140000000121000010000002720008000000018821102283210111310312671211202990003400000000000000000068310362619126600200225100000038264235391030316010000000000100000000030761319255482649785244521233413000001208804310000420100013020110121121919200306160000019510022002016564783472371642803623167620010000733205121881111182663020731096128152204918282425134835192101713076778412249413121535141179825196401825016413623112032519217171116211372568101212172558514743550
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................2117732.00773200005112151060516000000722030350000000713330817019741134101310106360000000000000000000000201816122591429176912840511047921006143914192019701143034051010102010010000020020103852276234113981126105220000030843274604101155169401413701296492711004134000003462006000702262311311153122269728381310100078131343901604210306155531311412139831158981278522311665986039101846164674650031087230338901800412840682042067516910861110071595391220260
.........................................................................................................CCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................2217631.00763100000009300212010000300204282240111021131412921133588510000000000000000000000013881101971712174223729322930106149016246051541037537227134041116031010001000110010110000181914831414183915812118300110220217025103051611232623521541623800423396000001100000320001001920112213031132086427734138644730114160000641126230242104633913131119022142335862320813418533161595122014745827136321382023272831410101431613111221914491111115342950261347448181508529178470133185981912681020815111702851150
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................2215642.00564200000000000000010100333200100000000053356012156110415141231000198106530000000000000000010201025098116010022202002200915211960035114074010000010550000500000281212663139100581260000071012226211031043020713009015038154710010140000041100000019992848612649910549171115110047210232010151312129211583333518154321108102031433231131819423835654396832520182131342422618021180511394795411650215134409419251825540191557263114131010711171221500
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................1813506.00350600000000000000002219006804125216430009147131415348111774381000122000000000000000006108804105666000000130000000210191141014031216300000001833014359000008141016581537880378602231171666213337023416951321241045564270624726590030211011031170001002216122350202346113711238132323000088103585203521215317311438710172111187622384644461716926478952412941132397118104982106217843938110112732917203563861451240040042753046990
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................2312799.0027990000208840000300000027000000000000126311493237311206665430000000000000000000000011200842446351016200010117310021200172318290311710250020000100100100000200005264823101241441109179400000100000030000020104010000000342214000341000000836002000101111730199201024151059400700003203042020021000001001010000011014272122815245301141272210100014930001244142369601010126671720000000133102021525050330
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2112786.002786000011201003060000001000017000000001222413810111464100000000000000000000000059421312104553024021100013407181165204200305100010102032000000010002213218121289100000412632617022123241214404536015024262000001000000440000002015712146661236202299247000054400874130020961820115810124831382123161242924147199441912516711273918743524507001059765713508921382132837311313101161819301621500942892119350
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................2011703.00170300001001000000000000010000123100000031104053003002592000063000000000000000000812990303735310300142000330067251514104013171010201000000000000120143321252611120000002901322323280187318418116111250502010020060020060000001004000712841126187042181123285004000032110212600203014203225522012786516462538721293756568312001122521904226190600818126237223181096400301230445320
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................1911443.00144300000000000000000000260000000000000000000310000000001000000000000000000000004223233413179271761162051574001571373965596141132100000000000000010000000000021002111200030000003811201044020001010200003010403015000000000002000100013132123310460030000000011010020600100010101112000021573017342517621663654124104100052001038040221411095052004304200100101010000
.........................................................................................................CCCGAATTATGTGGGAGCTGC..................................................................................................................................................................2111245.00124500000000000101000000000001000000000210031042110203210200000000000000000000002003030014110002003341000000135170612113500000000000000101000000514109032365210515600000030010020000130200030003001311100000000000001100000010323031647515516130651000031113417401107053319415934255161340933228084210376441111131256001005516531193219221134268195118642916153212136262118121150
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................2111201.00120100001100431102010000010000000000003010162021010362020000000000000000000000005104401011103310010000000000846311002031010000001000100000000000022330121003111000005040025902000312014451640616040301000000000000130000001000362002102031104100000021063361312120110321421117871234133115416392824182450832715011121722202251614521833301262016210100212000200100310240
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................2311195.0011950000000010000200000022000040000000011020047232101110100000000000000000000000551203100045000000012000200122029172601301002100000003021000000000003406102210023100100805101033104000101021400011500115101000708600000410000001045244405781484177008000010210102511102142063202457524126158111081531266383365262795215203270114081781812001312101122421318841131041413026169650
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................2411158.001158000000100000000000001200000000000001431501371230235213000000000000000000000000000026626910000000030000000011100304008001000000000000000010000213117101231126023810000000000000000000000000000000031213000000300000720000000000532019221203036184300020000000101000000000000000010000000000121985641714674600000000060010918631023000000133683000000000000001803020000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................2411035.0010350000000000000000000000000000000000011100100303102001000000000000000000000000040201136896001003021000100196105020000000000000000000100000000000531211475102005000003000203000001203000100301000003000001100000000000000826590180861283712009000010001727110311145531027147553075145126312220212320101325052213151211504663011400110929220215375125112541020811204178713220
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................2011007.0010070000001000000000000012020040000000431105026400009421010000000000000000000000000007000210000000000000000212050001001000000000000100000000000175961222202923000006031400500000010001000007104641117000010000001200000050010310321821614211100001003000111200330010401020321014206111611163211591257671270030234012193171207005241038205112339340000133329164210
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................221901.0090100000000000000000000000102300000000112020340112142223000000000000000000000000110010010021000000000000000030010000120510000120104000100000001020111003020000000000100061603010200122730001205233100010000000025000000000690334474411071030000020001513242114102120254020531133741579127811103775451091011532000006273101901044416410425424400150002029115100
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................231708.007080000000020000000000000000000000000020000012100102212000010000000000000000000001008247202420010002200100100603301011111000000000000000000000000122102243230200300000000000100000010000100030000000100000040000000000000213110021687219172031430000110112312000010201021011132203110032062124103440530225950050463120501225252258111243111199115032016421080
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................231643.006430000001100000000000001110010000000010000073001005351100000000000000000000000010001212047600021000100000004342302120160020100000001000000000001711093141311433000001001001140000011100040000000291300000100000045000000030310104104542340001000000011003131001101061010120001313252072233623632623210172100014444231100032212242003023241001023200421110
........................................................................................................GCCCGAATTATGTGGGAGCT....................................................................................................................................................................201622.0062200000000000000000000000000100000003130110103100100022000000000000000000000000011040300103200000100000000087339131000000000000000000000000000002550011302000200100020000023000000000000003010212000000006000000100000000065340047220120000000002000012000000000001000010016140122352140110614101000001001011110301116034000100110000200010032110
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................231540.00540000000012000000000001211000000000010002100300102311300000000000000000000000011000500411100000112100000001300110100000101000000010000000000002514011211000410000010000006000010010100000010365220004020000002200000003021710478513352000420001001101000100400002002010101000005294274815462141100112000027333200110014221120000004001020310020150
....................................................................................................................................................................TAGCACCACATGATTCGGT.........................................................................................................191464.0046400000000000000001000100002000000000200032160110514420000000000000000000000000000001000000000000000001000001000000000100000000003000000000002211341100030312000000000003901210110038000260120120010010200000000001200101427222711420226320000212103011042041621025143310724145103011300293092333311020000016102410303010002001021211155111525880
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................201455.00455000000000000010000000000001000000030000000000000100000000000000000000000000000000000000300000000000000001120000000000000000000010000100000000200100010001000000220011110000001007742000530302016000000000000000000020100010000000011004000000000301100301000001120000020011329172115205481712131375110101000112142030036001000010070201000000000230
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................181410.00410000000000000000000001200000000000001100100100000100100000000000000000000000047580000000000000000000000001000000000000000000000000000000000203000014241107000000103010110002000012000000124500000200000050000011000000531430000000000700100000410000000000000000002110000022230020862911051409301100106100102013020114034071001301100000301200110
........................................................................................................GCCCGAATTATGTGGGAGCTGCA.................................................................................................................................................................231392.003920000000110000000000000000000000000010301001112011151000000000000000000000000000009801211000000000000000333100001001500000000000000000000000031274022211010100000000000000000000000000000000000000000000000000000000020031114050512400020000000001000000001200000002000211001181741821429111100200270015158414012002413014150020212060101401015130
....................................................................................................................................................................TAGCACCACATGATTCGGCTTATC....................................................................................................241371.00371000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027890000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................201365.0036500000000000000000000000010100000003000110030000000000000000000000000000000003001000000000000000000000000102010000100000000000000000100000000010000110001000000000000100000000000021102011101011001000000000000000012035100000000140010000030010000001000100011101000311130244353276431422117100030100056630800670461121101334210000122134140
........................................................................................................GCCCGAATTATGTGGGAGCTGCGA----............................................................................................................................................................241327.0032700000000000000000000000000100000000000000100010000000000000000000000000000000000034216020000002000000100601102000102400000000000000000000000004480023200100000000000000010000000001000000000000200000000000000000000030010072337254500210000100020000000102001010010000111231117655521032201000110000101411809000301015251714922000100101313020
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................191255.00255000000000000000000000000061100000000000010000000010000000000000000000000000000200010000010000000000000400143000000000000000000000000000000000000002010000020000000000022000021020143000020440001300000000000000000000000210022020020000000001110000000400111001000001000401048414236192110000000000000004100000002024211000100000000000002000
........................................................................................................GCCCGAATTATGTGGGAGCTGCT.................................................................................................................................................................231243.002430000000000000000000000000000000000000010010100100121000000000000000000000000000004470211001000000000000703100000000000000000000000000000000022000121200110000003001000000000000000000000000000000000000000100000000210010200101001000000001000341400102002301213110001324212052904160252200001401122001050140012060110001440000100010111120
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................221228.00228000000020000000000001000000000000000120101100000002200000000000000000000000002000507051000000100000000005400000100000000000000000000000000001600100000000000000000000000000010000000000000020200000000000002000000000001001212200000000000200000000000000000000000010001000122322443212000000000310002210160000011314000000000000001101000000
........................................................................................................GCCCGAATTATGTGGGAGCTGT..................................................................................................................................................................221210.0021000000000000000000000000000000000001000010000000010210000000000000000000000000100000201210000000100000004311030000000000000000000000000000000121001102000100000002000001001000000000000000000010000001000000100000001021231544436230003000001000104100005010003100011060302000731268010500000011000200125110014065110130000000000000113020
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................231209.0020900000000000000000000100000100000000010010110000120100000000000000000000000000010000001100000000000000000000000000010000000000001000000000000000101011000000000000000000000000000000000010000000000000000002000000003030000012020120000000000010000000001000010000100100000011953722521810000000060000237160300124311002100001000000000001130
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................221204.0020400000000100000000000010001000000000001000000001100110000100000000000000000000001000300010000000000000000010000000000000000000000000000000000010001000000000000100000011000001000020000000010010001000000000000000000011010000000030000000010000120000001000000012000207031031121312061522010000017310200718000023043110211501100010010121140
........................................................................................................GCCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................241196.00196000000000000000000001010000000000001000000000000010000001000000000000000000000000000200000000000000000000400000000000000000000000000000000003200100010030000000008000000000000000010000000000000000000000000000000300120021100001210100000000010000000200000000000000021001050401020020200101300021022405000342940213001724100112101001210
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................231168.001680000000000000000000000000010000000001000112000001110000000000000000000000000100000003000000000000000000000000000000000000000000000000000000002000100000010000000000000000000000000000000000100000000000000000000000001400003000100001000000000000000110000401100000212120121172194300102100300002000101416130000002010101201000000000100130
....................................................................................................................................................................TAGCACCACATGATTCGGA.........................................................................................................191153.001530000000000000000000020000150000000100000024011004550000000000000000000000000020000010000000000000000000000000000000011010000000000000000000021010100000201000000000000100000020002000000000000000000000000010000000023110150011000010000000000210000100150000100010112103010202031103408100020001002100301190000000001000000301000111030
........................................................................................................GCCCGAATTATGTGGGAGCTGCC.................................................................................................................................................................231152.00152000000000000000000000000000000000000000013100100000000000000000000000000000000000020000000100000000000000000000000000000000000000000000000011100100110010000000180000000000000000000000000000000000000000000000000010000010000000000000000000012100010000020321100000001130312371612012110000111012020220310003020000100133000000000010000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................231145.001450000000110000000000000000000000000000000001000000201000000000000000000000000110200040001000000100000100300100000100000000000000000000000000011000010102006000000300100140000000100201000000000000000010000000000000101200010005222022000001000000100000201020001010101010100000000000320100001000000022000001011230103414100900100611310
....................................................................................................................................................................TAGCACCACATGATTCGGCTCT......................................................................................................221130.0013000000000000000000000000000100000001000000000000000100000000000000000000000000000000000001000000100000001000000000000000000000001000000000000000000000000000000001000021000000000000000010110000000000000000000000010101100000000010040000001001001001001100042101110300000036112222031001300002000005431030001110100100000200000000201330
........................................................................................................GCCCGAATTATGTGGGAGC.....................................................................................................................................................................191127.001270000000000000000000000000000000000120001100010000111000000000000000000000000040100000201010000011000000071891000101000000000000000102100000021000121022000000000000000000000000000000000100010000000000000000000000000562800541000000100000000000000000000010100100014110221000000000301000000000100000000010000000000000000000000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................211127.001270000000200110000000011000000000000000110041000011100000000000000000000000000000011400500000100010000000000000002001000000000000000000000000011271000200130000000000000100000000000000000001603000000000000120000000010000020102010000000000000000000000000000000001000001000702415020000000005100101100010010057000000000000000000100000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................231123.0012300000000000000000000000000000000000000100100000000010000442390000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000100000000000000010000000100000001000000230602020010200000000100201000001000003012100300100100001100
........................................................................................................GCCCGAATTATGTGGGAGCTGCAA----............................................................................................................................................................241118.00118000000010000000000000000000000000000010100010000000000000000000000000000000000000410030000000001000000000000000000000000000000000000000000001410330000000300000000000000000000000000000000000010000000000000000000000010000010412100000000000000000000000000000000000000000021221836060000000001000011502000000044000000000000002100000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................231116.001160000000000000000000000000000000000000000000000100012000000000000000000000000000100003121000001000000000233000000000000000000000000000000000013000000010300000000000000100000000000010001000030000000000000000000000002311102231400001100000000110000000000000000001020000100217015232000100011000003113000010001000100000000000010011130
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................241116.0011600000020000000000000010000000000000010000422000010000000000000000000000000001001040115000000000300000003010000020000000000000000000000000000100300001000000000000000000000000000000000000000100000010000000000000000001001010200100000000100001000000000000000000000000000103010205100000000200001344700000013104000000001000000000020020
........................................................................................................GCCCGAATTATGTGGGAGCTGCGC----C...........................................................................................................................................................251112.0011200000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000020000000000000000010000000000000000000000000000000000000000000020003002002000000000000000000000000000000000000000000000000100000000000400010121601700004243000010800000002200000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................231105.0010500000000000000000000010000000000000000100010110000100000000000000000000000000100000012100000000000000003211000110010000000000000000010000000010000000010000000000000000000000000001000000012000000000000000000000000002000010010000011030011000000000000010000000000000100001925212130010000000001003510000000142000000000000000100000010
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................232103.0020600000000000001000000110000000000001001100000000000001000000000000000000000000000000303000000000000000000000100000000000000000000000000000000130310100000000000000000000000000000000000000002100000000000000400000000000000020100220000000000000000000000000001000000000001051333166101600000000000000325310000001014000000000000001200000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................21196.0096000000000000000000000000010000000000000000100000010000000000000000000000000000000100000000000000000000000200000000000000000000000000000000002050000000000000000000000000000001000000000100020200000000000000000000100100000000000200000000001010000000100000100010000140000021023020022010002000100502020021055201211310030101000011140
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................22187.0087000000000000000000000100000000000000000010001100001100000000000000000000000000000100001100000000000000000000000000000100000000000000000000000100000000000100000000000020000010000000000000301000030000000000000000000060010001000000000000000000000000010000100011000000000191819060010000000000000202000021102000000000000101001110110
droSim2
CAAG--------C---ATA---G-----------------------GAAGAAATGTCGTTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CCAAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT-----------------------CATCG---GTTT----------T---TGCTA------GCCAGCCA--G-----TCCAC-----GASizeHit CountTotal NormTotalM023

Head
M024

Male-body
M025

Embryo
M053

Female-body
O001

Testis
O002

Head
SRR553485

Ovary
SRR553486

Ovary
SRR553487

Ovary
SRR553488

Ovary
SRR618934

Ovary
V044

Embryo
SRR902008

Ovary
SRR902009

Testis
SRR1275487

Male larvae
SRR1275485

Male prepupae
SRR1275483

Male prepupae
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211314505.00314505114761552183293454365471670017153248162349917784137221362719103848
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................20126806.00268065200311284119237184177412053022669157223024112010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................2218648.0086488634711067700873753251218213051798176000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................2216254.00625424681725471320025628033737123120801359001
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................2114637.0046373773956763400772235510000
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................2113427.0034275543873234002593177515891038537000
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................1912416.0024163222015381382193112943552543291003000
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2112226.0022261286477924001114121344201000
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................2011117.0011177683231310000111000000
........................................................................................................................................................................ACCACATGATTCGGCTT.......................................................................................................171930.00930000000621421887000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................231883.0088330138928004825155143383158000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................241444.0044420912600342513010524322000
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................181417.0041700035210852304425101101000
........................................................................................................GCCCGAATTATGTGGGAGCTGC..................................................................................................................................................................221394.0039430200200003374901000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................221385.0038599548141019366149371312000
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................201307.00307901621910459527012009
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................201306.003061641512310000003000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................231281.0028159985006476401172000
........................................................................................................GCCCGAATTATGTGGGAGCTG...................................................................................................................................................................211263.002638122010000248001000
........................................................................................................GCCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................231218.002180007001301015523162100
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................231182.00182006300383263382000000
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................191178.001784182002874141010000
.........................................................................................................CCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................221154.00154200900380130974729000
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................181151.0015139652100121247000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................231133.0013344720200459850524000
....................................................................................................................................................................TAGCACCACATGATTCG...........................................................................................................171125.001250000000100124000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................221118.00118855920033215102000
.........................................................................................................................................................................CCACATGATTCGGCTT.......................................................................................................161114.00114000000111121179000000
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................201102.00102414100131644134110000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23198.0098703400108231230226000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................22173.007320192005415165113000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................23160.0060000000101200253100
........................................................................................................................................................................ACCACATGATTCGGCTTT......................................................................................................18157.00572648000000019000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................23155.005511090131710120010000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22150.0050422200000003001000
....................................................................................................................................................................TAGCACCACATGATT.............................................................................................................15149.0049000000010147000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................23147.00470000008617132100000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22145.00451011440031713010000
........................................................................................................................................................................ACCACATGATTCGGCT........................................................................................................16143.0043000000003040000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGG......................................................................................................22138.0038350200000000100000
........................................................................................................................................................................ACCACATGATTCGGCTTA......................................................................................................18137.00376017000001013000000
....................................................................................................................................................................TAGCACCACATGATTCGGCGG.......................................................................................................21134.0034291400000000000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGA----............................................................................................................................................................24132.0032000200110928000000
..........................................................................................................................................................................CACATGATTCGGCTT.......................................................................................................15132.0032000000315320000000
....................................................................................................................................................................TAGCACCACATGATTC............................................................................................................16131.0031000000000031000000
........................................................................................................GCCCGAATTATGTGGGAGCT....................................................................................................................................................................20128.0028000010105120000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................22126.0026100000305600011000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................23125.0025121620010110010000
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19121.0021100110001403001000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................22121.0021170000000003001000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................24120.002000820010201042000
........................................................................................................GCCCGAATTATGTGGGAGC.....................................................................................................................................................................19119.0019000054000010000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................23119.001921800000132002000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGT----A...........................................................................................................................................................24118.0018000000000000018000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................21113.001300220001131003000
............................................................................................................GAATTATGTGGGAGCTGC..................................................................................................................................................................18112.0012000000000012000000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................23112.001200000050202012000
....................................................................................................................................................................TAGCACCACATGATTCGGCCG.......................................................................................................21111.001170300000001000000
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................21111.001180300000000000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCA.................................................................................................................................................................2319.00900010000103022000
........................................................................................................GCCCGAATTATGTGGGA.......................................................................................................................................................................1719.00900000000009000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----T...........................................................................................................................................................2519.00900000000001008000
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................2119.00920100011012100000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGA.....................................................................................................2319.00990000000000000000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGT----T...........................................................................................................................................................2418.00800000000000008000
....................................................................................................................................................................TAGCACCACATGATTCGGAC........................................................................................................2018.00840300000001000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----A...........................................................................................................................................................2517.00700000000001006000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................2317.00720100000111001000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGA----............................................................................................................................................................2317.00700000000200014000
........................................................................................................................................................................ACCACATGATTCGGC.........................................................................................................1516.00600000000015000000
.........................................................................................................................................................................CCACATGATTCGGCTTA......................................................................................................1716.00600000001212000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTCA......................................................................................................2216.00600100030110000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTA.....................................................................................................2316.00660000000000000000
....................................................................................................................................................................TAGCACCACATGATTCGGA.........................................................................................................1916.00620000011100010000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGT.....................................................................................................2316.00660000000000000000
......................................................................................................................................................................GCACCACATGATTCGGCTTA......................................................................................................2016.00600000000006000000
.........................................................................................................CCCGAATTATGTGGGAGCTTTT.................................................................................................................................................................2216.00600000000000006000
......................................................................................................................................................................GCACCACATGATTCGGCTTT......................................................................................................2015.00500000000005000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................2115.00500030000001001000
.........................................................................................................CCCGAATTATGTGGGAGCTG...................................................................................................................................................................2015.00510120100000000000
.........................................................................................................CCCGAATTATGTGGGAGCTGTT.................................................................................................................................................................2215.00500000000000005000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................2115.00500020010101000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................2415.00500000000003002000
............................................................................................................GAATTATGTGGGAGCTG...................................................................................................................................................................1715.00500000000005000000
.........................................................................................................CCCGAATTATGTGGGAGC.....................................................................................................................................................................1815.00510001100002000000
.........................................................................................................CCCGAATTATGTGGGAGCTGC..................................................................................................................................................................2115.00500000010001300000
.....................................................................................................................................................................AGCACCACATGATTCGGC.........................................................................................................1815.00520010200000000000
.........................................................................................................................................................................CCACATGATTCGGCT........................................................................................................1515.00500000001022000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTATA....................................................................................................2414.00410000000120000000
........................................................................................................GCCCGAATTATGTGGGAG......................................................................................................................................................................1814.00400002000002000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTTA....................................................................................................2414.00401000000000003000
....................................................................................................................................................................TAGCACCACATGATTCGGCGA.......................................................................................................2114.00410000000003000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTCG.....................................................................................................2214.00400400000000000000
.........................................................................................................................................................................CCACATGATTCGGCTA.......................................................................................................1614.00400000001102000000
........................................................................................................................................................................ACCACATGATTCGGCTC.......................................................................................................1714.00400000000004000000
........................................................................................................GCCCGAATTATGTGGGAGCTGT..................................................................................................................................................................2214.00400000000003100000
............................................................................................................GAATTATGTGGGAGCTGCG.................................................................................................................................................................1914.00400000000004000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCAA----A...........................................................................................................................................................2513.00300010000002000000
....................................................................................................................................................................TAGCACCACATGATTCGGG.........................................................................................................1913.00310200000000000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTTT......................................................................................................2313.00310100000000001000
........................................................................................................GCCCGAATTATGTGGGAGCTGCAA----............................................................................................................................................................2413.00300030000000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTT.....................................................................................................2313.00330000000000000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTA.......................................................................................................2013.00300120000000000000
droSec2
CAAG--------C---ATG---G-----------------------GAG-AAATGTCGTTCAC-----------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CCGAAG----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGATAT-----------------------CATCG---GTTT----------T---TGCTA------GCCAGCGGGTA-----TCCAC-----GASizeHit CountTotal NormTotalM054

Female-body
V113

Male-body
V114

Embryo
V115

Head
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................21127694.002769415599117372963626
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2011789.001789610115531533
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................221840.0084042766170177
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................201715.00715708061
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................221287.0028715997346
........................................................................................................GCCCGAATTATGTGGGAGCTGC..................................................................................................................................................................221177.001771057884
........................................................................................................GCCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................231166.0016643119319
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211113.00113106322
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211107.001075752223
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................19183.00833221831
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................23169.0069400281
.........................................................................................................CCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................22153.0053153305
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................21150.0050152258
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................22139.0039185106
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................23137.0037177211
........................................................................................................GCCCGAATTATGTGGGAGCTG...................................................................................................................................................................21127.002781711
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................22127.002720007
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19125.002525000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21123.002322010
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18122.00228077
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................24121.002114061
.........................................................................................................CCCGAATTATGTGGGAGCTGC..................................................................................................................................................................21121.00213576
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................23115.00151167
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22115.001514001
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................23115.001510113
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................19114.00149050
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................21113.001313000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23113.00136034
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................20111.00113152
.........................................................................................................CCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................23110.00104321
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................24110.00102224
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................2318.0082051
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................2218.0085030
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----C...........................................................................................................................................................2418.0080053
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................2315.0053110
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................1815.0053011
........................................................................................................GCCCGAATTATGTGGGAGCTGCA.................................................................................................................................................................2315.0050041
....................................................................................................................................................................TAGCACCACATGATTCGGT.........................................................................................................1914.0042002
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................2314.0041030
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................2314.0041120
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................2414.0043001
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................2214.0044000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTTA....................................................................................................2413.0031200
......................................................................................................CAGCCCGAATTATGTGGGAGCTGC..................................................................................................................................................................2413.0030021
....................................................................................................................................................................TAGCACCACATGATTCGGA.........................................................................................................1913.0032100
........................................................................................................GCCCGAATTATGTGGGAGCTGCGA----............................................................................................................................................................2413.0030210
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................2313.0033000
...................................................................................................................................................................GTAGCACCACATGATTCG...........................................................................................................1812.0020020
.........................................................................................................CCCGAATTATGTGGGAGCTGCGA----............................................................................................................................................................2312.0021001
.....................................................................................................................................................................AGCACCACATGATTCGGCTTG......................................................................................................2112.0022000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................2112.0020020
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAA.....................................................................................................2212.0022000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................2312.0021001
........................................................................................................GCCCGAATTATGTGGGAGCTGCAA----............................................................................................................................................................2412.0021010
...................................................................................................................................................................GTAGCACCACATGATTCGGCTTT......................................................................................................2312.0022000
.....................................................................................................................................................................AGCACCACATGATTCGGCTA.......................................................................................................2012.0022000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----CG..........................................................................................................................................................2512.0021010
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................2012.0021001
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................2212.0021100
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................2112.0021010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTATA....................................................................................................2411.0010010
.........................................................................................................CCCGAATTATGTGGGAGCTG...................................................................................................................................................................2011.0011000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................2211.0011000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----T...........................................................................................................................................................2511.0010010
.........................................................................................................CCCGAATTATGTGGGAGCTGCGT----TT..........................................................................................................................................................2511.0010001
....................................................................................................................................................................TAGCACCACATGATTCGGAA........................................................................................................2011.0010100
......................................................................................................CAGCCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................2511.0010010
................................................................................................................................................................TCCGTAGCACCACATGATTCGGCTT.......................................................................................................2511.0011000
....................................................................................................................................................................TAGCACCACATGATTCGGCTATT.....................................................................................................2311.0010001
.........................................................................................................CCCGAATTATGTGGGAGCTGCGG----............................................................................................................................................................2311.0010001
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGT.....................................................................................................2311.0010001
........................................................................................................GCCCGAATTATGTGGGAGCT....................................................................................................................................................................2011.0011000
..........................................................................................................................................................AG----TCCGTAGCACCACATGATTCG...........................................................................................................2311.0010010
....................................................................................................................................................................TAGCACCACATGATTCGTT.........................................................................................................1911.0010001
....................................................................................................................................................................TAGCACCACATGATTCGGAGA.......................................................................................................2111.0010100
.....................................................................................................................................................................AGCACCACATGATTCGGCTC.......................................................................................................2011.0011000
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................2011.0011000
........................................................................................................................................................GAAG----TCCGTAGCACCACATGATT.............................................................................................................2311.0011000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTCT.....................................................................................................2211.0011000
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................2111.0010010
........................................................................................................GCCCGAATTATGTGGGAGCTGTT.................................................................................................................................................................2311.0011000
......................................................................................................CAGCCCGAATTATGTGGGAGCTG...................................................................................................................................................................2311.0010010
droYak3
CTAT--------T---ATCCTGGA---------CGTTGCCATCCTGGAT-TAAACTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----CGTTT-------------CTAAAA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT-----------------------CAGCA---ATTT----------T---TGGTA------GCCAATCGTTA-----TCTACAATTACTSizeHit CountTotal NormTotalM026

Head
M043

Female-body
M056

Embryo
V046

Embryo
V052

Head
V058

Head
V120

Male-body
SRR1275488

Male larvae
SRR1275486

Male prepupae
SRR1275484

Male prepupae
GSM1528802

follicle cells
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211150883.001508832180516107107850166810971559521361819131
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2117681.0076812837737554700000
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2015921.005921696585420316491115601060
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................2213830.0038305547152376364583142050
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................2211207.001207981818931441070000
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................2011099.001099120197701000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................2011006.00100639039710001010
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211555.00555235131611578800000
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211488.004886064345123400000
........................................................................................................GCCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................231475.004750393744421240000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................221444.004443233362321020000
........................................................................................................GCCCGAATTATGTGGGAGCTGC..................................................................................................................................................................221265.00265020193338920000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................231243.0024315318340110000
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191190.00190452210971311010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................231108.0010817236102110120
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................22181.008123232810510000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................24176.00761254910000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................23165.006513143600110000
........................................................................................................GCCCGAATTATGTGGGAGCTG...................................................................................................................................................................21163.00631124313210000
.........................................................................................................CCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................22158.00580242440400020
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21151.0051146400000000
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................19148.00480351102000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22147.00471271900000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23142.00422241410010000
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19138.0038034400000000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................23135.0035032730010010
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................22123.0023171500000000
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................18123.00231121000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................21121.0021401700000000
.........................................................................................................CCCGAATTATGTGGGAGCTGC..................................................................................................................................................................21120.0020021220130000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22120.0020303041000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................24118.001819800000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................21115.0015013200000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................21114.0014101020100000
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................20114.0014021200000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGG......................................................................................................22113.001380002300000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................23112.0012021000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................20211.0022201100000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................23110.001003700000000
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18110.001005121010000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................2319.00913500000000
....................................................................................................................................................................TAGCACCACATGATTCGGAC........................................................................................................2018.00810700000000
....................................................................................................................................................................TAGCACCACATGATTC............................................................................................................1618.00800000001070
........................................................................................................GCCCGAATTATGTGGGAGC.....................................................................................................................................................................1918.00800800000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCT.................................................................................................................................................................2318.00800600020000
.....................................................................................................................................................................AGCACCACATGATTCGGCTC.......................................................................................................2017.00700700000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................2416.00602200200000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................2116.00612201000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................2316.00631000200000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................2316.00602300100000
....................................................................................................................................................................TAGCACCACATGATTCGGCAC.......................................................................................................2115.00501400000000
.........................................................................................................CCCGAATTATGTGGGAGCTG...................................................................................................................................................................2015.00502300000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCC.................................................................................................................................................................2315.00500500000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCA.................................................................................................................................................................2315.00500410000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGA----............................................................................................................................................................2414.00401120000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAA.....................................................................................................2214.00404000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................2214.00421000100000
droEre2
TTAT--------T---ATCTTGGA---------CGC----GTTCCTGAC-GAATGTCATTCAC-----------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGC----TGTTT-------------TCAGGA----TCCGTAGCACCACATGATTCGGCTTCGTGGTGCAGGACAT-----------------------CAGCG---GTTT----------T---TGCTA------GACAACGGTTA-----TCTACAATTACCSizeHit CountTotal NormTotalM055

Female-body
M057

Embryo
V060

Head
V040

Embryo
V107

Male-body
V108

Head
GSM1528801

follicle cells
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................21144981.004498128559831610005261996455628
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2012879.002879132533891572837850
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................2211529.0015291128954912791660
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................2011301.00130112781210190
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................221580.005804404710234470
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211538.005382221745132140
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................211481.004811245942220
........................................................................................................GCCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................231177.001774721121220650
........................................................................................................GCCCGAATTATGTGGGAGCTGC..................................................................................................................................................................221176.001761415910211070
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................231170.001701531101230
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211150.0015011619203100
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................221122.001227019768120
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191121.001215711406430
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................221112.00112723402310
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................241108.00108103400010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................23176.007660331450
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19166.006664100010
........................................................................................................GCCCGAATTATGTGGGAGCTG...................................................................................................................................................................21164.006443211890
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................20159.005905700110
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21158.005857010000
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................19156.005648401210
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23147.004743010120
.........................................................................................................CCCGAATTATGTGGGAGCTGCG.................................................................................................................................................................22140.0040151318120
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18138.003870202270
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22132.003232000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGT----............................................................................................................................................................24126.00266010739
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................23123.002316300310
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................21116.001616000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22112.001210110000
.........................................................................................................CCCGAATTATGTGGGAGCTGC..................................................................................................................................................................21112.00121101360
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................22110.001010000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................2419.0099000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGT.....................................................................................................2319.0098000100
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................2319.0096001110
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................1817.0076000010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................2317.0074000120
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................2316.0066000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................2216.0066000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAAA....................................................................................................2316.0066000000
.........................................................................................................CCCGAATTATGTGGGAGCTG...................................................................................................................................................................2015.0055000000
....................................................................................................................................................................TAGCACCACATGATTCGGCGG.......................................................................................................2115.0055000000
........................................................................................................GCCCGAATTATGTGGGAGCTGA..................................................................................................................................................................2214.0041100020
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................2314.0040100030
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................2314.0044000000
.........................................................................................................CCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................2314.0041300000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAA.....................................................................................................2214.0044000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTA.......................................................................................................2014.0044000000
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................2013.0031001100
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCAA....................................................................................................2413.0033000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................2313.0033000000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................2113.0033000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTTT.....................................................................................................2213.0033000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAG....................................................................................................2413.0032000100
.....................................................................................................................................................................AGCACCACATGATTCGGCTG.......................................................................................................2013.0033000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTC......................................................................................................2112.0022000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCT.................................................................................................................................................................2312.0020100100
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGA.....................................................................................................2312.0022000000
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................2112.0020101000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................2212.0022000000
........................................................................................................GCCCGAATTATGTGGGAGCTGCGC----............................................................................................................................................................2412.0022000000
..........................................................................................................CCGAATTATGTGGGAGCTGCG.................................................................................................................................................................2112.0022000000
....................................................................................................................................................................TAGCACCACATGATTCGCT.........................................................................................................1912.0020000020
.....................................................................................................................................................................AGCACCACATGATTCGGCA........................................................................................................1912.0022000000
.................................................................................................................................................................................TTCGGCTTCGTGGTGCAGGAC..........................................................................................2112.0020000200
.....................................................................................................................................................................AGCACCACATGATTCGGC.........................................................................................................1812.0022000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTTT......................................................................................................2312.0022000000
....................................................................................................................................................................TAGCACCACATGATTCTT..........................................................................................................1851.4075000020
dp5
G-----------C---ATCCTGGCTGCTGACGCCGC----GTCCTTGAC-GAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGT----------T-CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC-----------------------CTTCA---GTATC--------------------------CAAGT-----------CGCATTCATTSizeHit CountTotal NormTotalM022

Male-body
M040

Female-body
M059

Embryo
M062

Head
V043

Embryo
V051

Head
V112

Male-body
SRR902010

Ovary
SRR902011

Testis
SRR902012

CNS imaginal disc
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211124101.0012410154078973786496774780340031115277123213
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................2216796.00679685522425137594376283553320
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2016695.00669544492555048316932616217514
.....................................................................................................................................................................AGCACCACATGATTCGGCTG.......................................................................................................2015429.0054291541165420000
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................2112052.002052261102679107753719520
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................221546.0054615405323314317720
........................................................................................................GCCCGGATTCTGTGTGTGCTG...................................................................................................................................................................211528.00528345751168184151
........................................................................................................GCCCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................231526.005261251771096319131028
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211519.0051984393871863000
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191518.005181421914498141202114
....................................................................................................................................................................TAGCACCACATGATTCGGCTGC......................................................................................................221464.00464131889410445180200
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTT.....................................................................................................231400.00400183216182720170
.....................................................................................................................................................................AGCACCACATGATTCGGCTGT......................................................................................................211365.00365036201000011
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................191274.00274027301000000
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................201199.001992110293010000
......................................................................................................................................................................GCACCACATGATTCGGCTG.......................................................................................................191198.00198119500110000
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................211184.0018431512722962000
........................................................................................................GCCCGGATTCTGTGTGTGCTGC..................................................................................................................................................................221165.00165110616111333426
....................................................................................................................................................................TAGCACCACATGATTCGGCTGG......................................................................................................221154.0015420782129210210
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................221127.001271763111251000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTG.......................................................................................................221122.00122012200000000
........................................................................................................GCCCGGATTCTGTGTGTGCT....................................................................................................................................................................20186.008617310541010
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTAA....................................................................................................24178.007807331010000
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18177.007703311101415021
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTA.....................................................................................................23159.005934353001400
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................20157.005704921300200
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................20157.005705601000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGAA.....................................................................................................23150.005013583000300
.......................................................................................................................................................................CACCACATGATTCGGCTG.......................................................................................................18149.004903200476000
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................21138.003813430000000
.........................................................................................................CCCGGATTCTGTGTGTGCTG...................................................................................................................................................................20138.003803800000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGAAA....................................................................................................24136.003613220100000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTC.....................................................................................................23130.00306715035030
.....................................................................................................................................................................AGCACCACATGATTCGGCTA.......................................................................................................20128.002802800000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGTT.....................................................................................................22126.002602600000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGA......................................................................................................21125.002502401000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................22124.002401461101001
.........................................................................................................CCCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................22122.002201900010002
........................................................................................................GCCCGGATTCTGTGTGTGCTA...................................................................................................................................................................21118.001801710000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................22116.001601330000000
........................................................................................................GCCCGGATTCTGTGTGTGC.....................................................................................................................................................................19116.001601021020010
........................................................................................................GCCCGGATTCTGTGTGTGCTGT..................................................................................................................................................................22115.001501110002010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................23114.00140922010000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGC......................................................................................................21113.001301300000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTTA....................................................................................................24112.00121830000000
......................................................................................................................................................................GCACCACATGATTCGGCTGT......................................................................................................20112.001201110000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTCC....................................................................................................2419.0095002011000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................2319.0090440100000
.........................................................................................................CCCGGATTCTGTGTGTGCTGC..................................................................................................................................................................2119.0090900000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................2118.0080800000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................2318.0080700001000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGGT.....................................................................................................2318.0080000240200
....................................................................................................................................................................TAGCACCACATGATTCGGT.........................................................................................................1917.0070700000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCA.....................................................................................................2317.0070110311000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCT.....................................................................................................2317.0070000511000
.....................................................................................................................................................................AGCACCACATGATTCGGCTAA......................................................................................................2117.0070700000000
.........................................................................................................CCCGGATTCTGTGTGTGCT....................................................................................................................................................................1917.0070700000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................2116.0060600000000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTGT......................................................................................................2316.0060600000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................2215.0050410000000
........................................................................................................GCCCGGATTCTGTGTGTGCTGCGC----............................................................................................................................................................2415.0050400000010
........................................................................................................GCCCGGATTCTGTGTGTGCTT...................................................................................................................................................................2115.0050400010000
........................................................................................................GCCCGGATTCTGTGTGTGCTGA..................................................................................................................................................................2215.0050210000110
........................................................................................................GCCCGGATTCTGTGTGTGCTGCGT----............................................................................................................................................................2414.0040400000000
.....................................................................................................................................................................AGCACCACATGATTCGGC.........................................................................................................1814.0040400000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGAA.....................................................................................................2214.0040400000000
........................................................................................................GCCCGGATTCTGTGTGTGCTGCC.................................................................................................................................................................2314.0040030010000
.....................................................................................................................................................................AGCACCACATGATTCGGCAA.......................................................................................................2014.0040400000000
.......................................................................................................................................................................CACCACATGATTCGGCTGT......................................................................................................1914.0040400000000
......................................................................................................................................................................GCACCACATGATTCGGCT........................................................................................................1814.0040400000000
....................................................................................................................................................................TAGCACCACATGATTCGGCAC.......................................................................................................2114.0040220000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGG......................................................................................................2114.0040400000000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGTA.....................................................................................................2223.5070700000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGGC.....................................................................................................2313.0030200010000
........................................................................................................................................................................ACCACATGATTCGGCTGT......................................................................................................1813.0031200000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCTG....................................................................................................2413.0030100020000
.....................................................................................................................................................................AGCACCACATGATTCGGCA........................................................................................................1913.0030300000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................2213.0030210000000
....................................................................................................................................................................TAGCACCACATGATTCGGCGT.......................................................................................................2113.0030110100000
....................................................................................................................................................................TAGCACCACATGATTCGGAC........................................................................................................2013.0030021000000
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................2013.0031010100000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGAT.....................................................................................................2313.0030101100000
....................................................................................................................................................................TAGCACCACATGATTCGGCCT.......................................................................................................2113.0030111000000
....................................................................................................................................................................TAGCACCACATGATTCGGTA........................................................................................................2013.0030200100000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCC.....................................................................................................2312.0020100010000
........................................................................................................GCCCGGATTCTGTGTGTGCTAAA.................................................................................................................................................................2312.0020200000000
droPer2
TATG--------C---ATCCTGGCTGCTGACGCCGT----GTCCTTGAC-GAATGTCAAACACCTC-GCAGGCTC-TGCAGC--AGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCGC----TGTGT----------T-CTTAAAA----GCCGTAGCACCACATGATTCGGCTGCGTGGTCAGCCACAC-----------------------CTTCA---GTATC--------------------------CAAGT-----------CGCATTCATTSizeHit CountTotal NormTotalM021

Embryo
M042

Female-body
V042

Embryo
V050

Head
V057

Head
V111

Male-body
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211118009.001180099513513758254527313631209
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2012555.00255574176110022768046
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................2212290.0022906235423125180340
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211959.0095972110863144112
.....................................................................................................................................................................AGCACCACATGATTCGGCTG.......................................................................................................201803.00803177742325
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................221669.0066936011510451354
....................................................................................................................................................................TAGCACCACATGATTCGGCTGG......................................................................................................221377.00377302101212410
....................................................................................................................................................................TAGCACCACATGATTCGGCTGC......................................................................................................221354.0035421853910640
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211331.003311721458330
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191303.003032532576120
........................................................................................................GCCCGGATTCTGTGTGTGCTG...................................................................................................................................................................211152.001521538051480
........................................................................................................GCCCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................231100.0010017819161822
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTT.....................................................................................................23185.0085372402157
.......................................................................................................................................................................CACCACATGATTCGGCTG.......................................................................................................18184.00846580371
......................................................................................................................................................................GCACCACATGATTCGGCTG.......................................................................................................19175.007546244100
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................20161.00615900011
....................................................................................................................................................................TAGCACCACATGATTCGGCTGAA.....................................................................................................23155.00554291030
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTA.....................................................................................................23150.00503460370
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................21143.004324421120
.....................................................................................................................................................................AGCACCACATGATTCGGCTGT......................................................................................................21143.00430430000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGAAA....................................................................................................24141.00413280001
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19141.00410390020
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18134.003414214112
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................22132.00322161121
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................20126.00262400020
....................................................................................................................................................................TAGCACCACATGATTCGGCTGGT.....................................................................................................23125.00251115170
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTAA....................................................................................................24123.00231670000
........................................................................................................GCCCGGATTCTGTGTGTGCTGC..................................................................................................................................................................22122.0022342238
...................................................................................................................................................................GTAGCACCACATGATTCGGCTG.......................................................................................................22121.00210210000
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................20119.00194120120
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTC.....................................................................................................23115.0015310281
........................................................................................................GCCCGGATTCTGTGTGTGCT....................................................................................................................................................................20114.0014030128
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................22114.00141200110
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCT.....................................................................................................23112.0012020190
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................21112.00120120000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGA......................................................................................................21111.00110110000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................2217.007160000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGGC.....................................................................................................2316.006002130
.....................................................................................................................................................................AGCACCACATGATTCGGCTA.......................................................................................................2016.006060000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCA.....................................................................................................2315.005400010
....................................................................................................................................................................TAGCACCACATGATTCGGCAC.......................................................................................................2114.004310000
....................................................................................................................................................................TAGCACCACATGATTCGGCTCG......................................................................................................2214.004000040
.....................................................................................................................................................................AGCACCACATGATTCGGCTGC......................................................................................................2114.004040000
.........................................................................................................CCCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................2214.004020011
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTAC....................................................................................................2423.507700000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGG......................................................................................................2113.003200010
.........................................................................................................CCCGGATTCTGTGTGTGCTG...................................................................................................................................................................2013.003030000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTTA....................................................................................................2413.003120000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................2313.003300000
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................2113.003030000
........................................................................................................GCCCGGATTCTGTGTGTGCTA...................................................................................................................................................................2113.003030000
...............................................................................................................................C----TGTGT----------T-CTTAAAA----GCCG............................................................................................................................1813.003201000
........................................................................................................GCCCGGATTCTGTGTGTGCTGA..................................................................................................................................................................2213.003300000
....................................................................................................................................................................TAGCACCACATGATTCGGCTCT......................................................................................................2212.002010010
......................................................................................................................................................................GCACCACATGATTCGGCT........................................................................................................1812.002020000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................2212.002010010
....................................................................................................................................................................TAGCACCACATGATTCGGCTGAT.....................................................................................................2312.002100100
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTCA....................................................................................................2412.002100001
....................................................................................................................................................................TAGCACCACATGATTCGGT.........................................................................................................1912.002110000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGCC.....................................................................................................2312.002000020
........................................................................................................GCCCGGATTCTGTGTGTGCTGCGT----............................................................................................................................................................2412.002001010
........................................................................................................................................................................ACCACATGATTCGGCTGT......................................................................................................1812.002100100
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTCC....................................................................................................2412.002200000
.....................................................................................................................................................................AGCACCACATGATTCGGC.........................................................................................................1812.002020000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................2212.002100010
.....................................................................................................................................................................AGCACCACATGATTCGGCTAA......................................................................................................2112.002020000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTGT......................................................................................................2312.002020000
.....................................................................................................................................................................AGCACCACATGATTCGGCTGTT.....................................................................................................2212.002020000
droWil2
CCGG--------CATTACCTATGC---------CGT----GTCCTTGAC-GAATGTCAAATTT----TCTGACTCCTGCAACTCATGTAAGGCTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCGC----TACAA-------------CAAGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAAGTACATCGCAACGT---------------CATCG---TGT-------------------T------GAAGACTTAATCTT-AT---CCATAATASizeHit CountTotal NormTotalM020

Head
M045

Female-body
V117

Male-body
V118

Embryo
V119

Head
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211202227.002022271763891330790086342997
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2016359.006359449747966816501
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................2215641.005641410882743427236
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................2111899.001899181478043
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2111240.001240121911163
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................2211082.001082743158715123
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................2211063.00106383161911151
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................201690.0069020657166
...............................................................................................................................C----TACAA-------------CAAGAACTAAGACG............................................................................................................................201481.0048111337799
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................201441.004414410000
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211440.00440307661588
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................221384.003843272031816
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191311.003112252503130
........................................................................................................GCCCGGATTCTGCGAGTGCTGCG.................................................................................................................................................................231234.00234017517141
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................231125.0012576332113
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................20199.0099990000
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................18181.0081698022
........................................................................................................GCCCGGATTCTGCGAGTGCTG...................................................................................................................................................................21149.00494142227
........................................................................................................GCCCGGATTCTGCGAGTGCTGC..................................................................................................................................................................22147.00470402221
....................................................................................................................................................................TAGCACCACATGATTCGGCTGG......................................................................................................22146.0046460000
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................19145.00451427130
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................23142.0042314142
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21138.0038137000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................23138.0038740198
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18137.00371110178
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19128.0028027001
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22125.0025222010
....................................................................................................................................................................TAGCACCACATGATTCGGCGG.......................................................................................................21122.0022220000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTG.....................................................................................................23118.0018162000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................22115.0015141000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22115.0015132000
........................................................................................................................................................................ACCACATGATTCGGCTTT......................................................................................................18213.0026251000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCC.....................................................................................................23113.001373201
.....................................................................................TGTAAGGCTTCACCAAGCA........................................................................................................................................................................................19112.0012000120
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................23111.001128001
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGT.....................................................................................................23111.001190011
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23110.001023140
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................2119.00908010
....................................................................................................................................TACAA-------------CAAGAACTAAGACG............................................................................................................................1918.00801070
........................................................................................................GCCCGGATTCTGCGAGTGCTGCGT----............................................................................................................................................................2418.00800224
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................2318.00861010
.......................................................................................................AGCCCGGATTCTGCGAGTGCTGC..................................................................................................................................................................2317.00700043
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTCC....................................................................................................2417.00713003
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................2017.00722030
.....................................................................................................................................................................AGCACCACATGATTCGGCTG.......................................................................................................2016.00606000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGTT.....................................................................................................2316.00660000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................2215.00523000
........................................................................................................................................................................ACCACATGATTCGGCTTA......................................................................................................1815.00550000
....................................................................................................................................................................TAGCACCACATGATTCGGAC........................................................................................................2014.00440000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTC......................................................................................................2114.00404000
........................................................................................................GCCCGGATTCTGCGAGTGCT....................................................................................................................................................................2014.00411101
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................2114.00440000
.......................................................................................................AGCCCGGATTCTGCGAGTGCTGCG.................................................................................................................................................................2414.00401030
.......................................................................................................AGCCCGGATTCTGCGAGTGCTG...................................................................................................................................................................2213.00321000
.......................................................................................................................................................................CACCACATGATTCGGCTTT......................................................................................................1913.00311001
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCCC....................................................................................................2413.00303000
........................................................................................................GCCCGGATTCTGCGAGTGCTGT..................................................................................................................................................................2212.00200002
......................................................................................................CAGCCCGGATTCTGCGAGTGCTG...................................................................................................................................................................2312.00210010
.........................................................................................................................................................................................CATGGTGAAGTACATCGC.....................................................................................1812.00200020
....................................................................................................................................................................TAGCACCACATGATTCGTT.........................................................................................................1912.00201001
.............................................................................................................................................................TAAGACGTAGCACCACATGATTCGGCT........................................................................................................2712.00211000
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................2212.00210010
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAG.....................................................................................................2312.00211000
.......................................................................................................AGCCCGGATTCTGCGAGTGCT....................................................................................................................................................................2112.00200110
...............................................................................................................................C----TACAA-------------CAAGAACTAAGAC.............................................................................................................................1912.00200020
............................................................................................................................................................CTAAGACGTAGCACCACATGATTC............................................................................................................2412.00200110
.........................................................................................................CCCGGATTCTGCGAGTGCTGCG.................................................................................................................................................................2212.00202000
.............................................................................................................................................................TAAGACGTAGCACCACATGATTCGGC.........................................................................................................2612.00202000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTCA.....................................................................................................2212.00200011
.......................................................................................................AGCCCGGATTCTGCGAGTGC.....................................................................................................................................................................2011.00100010
........................................................................................................GCCCGGATTCTGCGAGTGCTGG..................................................................................................................................................................2211.00110000
........................................................................................................GCCCGGATTCTGCGAGTGC.....................................................................................................................................................................1911.00100010
droVir3
GCAGCTGTGCGGC---ATCCTTGA-----------T----GTCCTTGAC-GAATGTCAAACGGCTTGGCCGGCTC-AACA-----------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCGC----TGTTT--------------AGAGG----TACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCAA------CTGCAACAGA--GGGCGTCAACG---GTAT----------T---TATTA-------ATATAGGCTA-----CGTAC-ATACGTSizeHit CountTotal NormTotalM027

Male-body
M028

Head
M047

Female-body
M061

Embryo
SRR060654

Ovary
SRR060655

Testis
SRR060656

Ovary
SRR060657

Testis
SRR060658

Ovary
SRR060659

Testis
SRR060660

Ovary
SRR060661

Embryo
SRR060662

Embryo
SRR060663

Embryo
SRR060664

Male-body
SRR060665

Female-body
SRR060666

Male-body
SRR060667

Female-body
SRR060668

Male-body
SRR060669

Female-body
SRR060670

Testis
SRR060671

Male-body
SRR060672

Female-body
SRR060673

Ovary
SRR060674

Ovary
SRR060675

Ovary
SRR060676

Ovary
SRR060677

Ovary
SRR060678

Testis
SRR060679

Testis
SRR060680

Testis
SRR060681

Testis
SRR060682

Embryo
SRR060683

Testis
SRR060684

Embryo
SRR060685

Embryo
SRR060686

Embryo
SRR060687

Embryo
SRR060688

Ovary
SRR060689

Testis
SRR1106712

embryo_0-2h
SRR1106713

embryo_0-2h
SRR1106714

embryo_2-4h
SRR1106715

embryo_4-6h
SRR1106716

embryo_4-6h
SRR1106717

embryo_6-8h
SRR1106718

embryo_6-8h
SRR1106719

embryo_8-10h
SRR1106720

embryo_8-10h
SRR1106721

embryo_10-12h
SRR1106722

embryo_10-12h
SRR1106723

embryo_12-14h
SRR1106724

embryo_12-14h
SRR1106725

embryo_14-16h
SRR1106726

embryo_14-16h
SRR1106727

larvae
SRR1106728

larvae
SRR1106729

mixed whole adult body
SRR1106730

embryo_16-30h
V047

Embryo
V053

Head
V116

Male-body
GSM1528803

follicle cells
SRR2096013

Ovary_Strain_9_oxidized
SRR2096014

Ovary_Strain_160_oxidized
SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096055

Ovary_Min_43
SRR2096056

Ovary_Min_46
SRR2096057

Ovary_Min_50
SRR2096058

Ovary_Min_98
SRR2096059

Ovary_Min_164
SRR2096060

Ovary_Min_193
SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers
SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211460912.00460912628428197159401743875799909359636599422432612275473662751443613911662629382119014165104228709126271223543173262179946771018816151163312756991298741185519058491868144314149911787145815183112196335083468219922261828927710906259510182041678203531416818083141906580196841852712869147401852420185656552335554995510032
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................22129088.00290883871151128618464179232451911315874372492662684226312288738750552854687683766399119763621477882081775291924534575651395241447353115109847460322230777112243127243110951053604626629477475620639515301338674714
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................20121100.00211002339706257472917628041566721169528420212299139675390319421417404352183515412217540565566434683209681611649888128109117187102244179110115895547681756822866078898985930925827317616931322133855666610061008
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................22113944.00139448413025132513716134212461262217243955813931840128341536096914613946437540578651568469375714612190598873601265511510062605041236023136094105674586188581516323439464614180151155334349
........................................................................................................GCCCGGATACTGTGTGTGTTGC..................................................................................................................................................................2216041.006041101312531851157422700000014029851215117633374110651111101231100010110155508727530842526251913312229091292911861280
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................2215507.0055074242625623712615510603412402201915825720238545249463356173505133189118171583812021220034455411153111276016183916114861625810698121281226
........................................................................................................GCCCGGATACTGTGTGTGTTG...................................................................................................................................................................2113749.0037490039611171644420237258100110140214211856242534154017835193334141000010200100000000004560415246266328422924282024305365361489528
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................2213607.0036074146124411821144400300000001201332419402138441660246223933304281141153054151123645003116111012815611137367295329260357413224451113101
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................2313409.00340911711312311240000423400100050043130731316155421543126132305198841218411223437232000105000714135733676516425322945807267109129
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................2113147.00314734191488518327512011060000001400591324914136132262710531051122409020491923281614121117311521187711021780107311898927126108108129105102445213922
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2112731.0027313533264511342018160000000000000830228910105645132723286575312635123443323333410341630022624162230111322401313151417
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................2412359.0023591011820120200000620000000002212335160250001900731252601049100210010120201000001200094472952304612196813123055398090
........................................................................................................GCCCGGATACTGTGTGTGTTGCAA----............................................................................................................................................................2411768.00176800110000100100000000000000120000303100210020000000000000000000000014012911428425690280270326364
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................2311633.0016331444541761062302026041341223452020143524861197423524272631402641300010322111153111001106409195563211198119182215173826
........................................................................................................GCCCGGATACTGTGTGTGTTGCG.................................................................................................................................................................2311434.001434112021122123105100000000050241071471215921110351011251816201428814943510051330410253216014479851071882989793430
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................2311416.00141631193361766000012300000040034252030212427115133734336339318475354628411187470011461004146486502842332040393726255275
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................2111182.00118221835125256010120000010000801880103222118000205630747730997764129331000413717333937212060245112730
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................1911177.001177253328281402000002010232122011211419242186253022924232083433603335464143110434405643939187662604563511520213859
........................................................................................................GCCCGGATACTGTGTGTGTTGCA.................................................................................................................................................................2311167.0011670000000000003010000000000011000100000000000000000000000000000100070633900000132250227234243
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................2011069.001069059052350400000210000001004327710031058456100000000010000010002110711200922511501014
.........................................................................TC-AACA-----------GCTGTACAACGAA........................................................................................................................................................................................191520.0052000101240000022000100400523592102810405600000000000000000000400000404053283527123732424104541
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................241414.0041410451440000000000000001004241019413551201022191315100000000000200000002000344445147141408851317
........................................................................................................GCCCGGATACTGTGTGTGTTGCAA----A...........................................................................................................................................................251385.00385000000000000310000000000000000001011010000000000000000000000000003335273000101946577581
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................201385.0038510911020000000000000100210420101111119685001100010000100000011000003034150110001544465561
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................201333.00333331465109100000000000000010001000220400000031010000010000101000000000072000012520110
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCC.....................................................................................................231268.0026837033114150000000000000230072112221372102300006210000000000000000010002050000110261000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................231256.00256009730100000100000003005557411115301168918616700000000101010100012120901013330142311044
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................231246.0024620143204000000010000050080013101161251021016141340000000000010000000400042813120010004151268
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................231243.00243130714300000000000000220040132303214470201020411000000000000000001000500050000001500311
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................231241.002418016151100000000000000100085165181910362601121112000000000000000000010400044222224722036
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................211211.0021100106000000000000000000022141000010325550100000000000000000000000023257000000425212929
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................181196.001960030104100100000000030158710851046100128118111000000000000000000001006171142000000111410
........................................................................................................GCCCGGATACTGTGTGTGTT....................................................................................................................................................................201153.001530022000012010100000000010001011010120100000000000000000000030000091013100010717162533
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................181150.00150610101102010000100000010042104110010232010000001000000100130202000143115149482140010
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................221148.0014810215200000001000000000041028100035179225100000000000000000000000106318303000103200
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................231145.0014500241100000001000000000064210100002034332300000000000000000000000004084100000100012
........................................................................................................................................................................ACCACATGATTCGGCTT.......................................................................................................171133.001330000000000000000000000000000000000000000000000002010000320000000118111700000041131221
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................191126.0012603435302000001000000000123044110043222460000000000000000110011001200024435101021
..........................................................................................................................................................................CACATGATTCGGCTT.......................................................................................................151124.0012400000000000000000000000000000000000000001753057818611813215461400000000000000000000
.........................................................................................................................................................................CCACATGATTCGGCTT.......................................................................................................161108.0010800000000000000000000000000000000000000007106414421441555205231500000000000000000000
........................................................................................................GCCCGGATACTGTGTGTGTTGA..................................................................................................................................................................221107.0010700000000010010000000000101000000000020000000000000000000000000000813711100159102421
........................................................................................................GCCCGGATACTGTGTGTGT.....................................................................................................................................................................191104.00104000000001000000000000000010000000000100000000000000000000000000009614131123128121217
........................................................................................................GCCCGGATACTGTGTGTGTTGAAA----............................................................................................................................................................24192.009200000000000000000000000010000000000010000000000000000000000000000414624201481561410
....................................................................................................................................................................TAGCACCACATGATTCGGCTCT......................................................................................................22191.009112022031002000000000060010110312416010030210000001000000000000001000100000011001102
........................................................................CTC-AACA-----------GCTGTACAACGAA........................................................................................................................................................................................20189.0089000110100000020000000000000100005003022000000000000000000000000001681627835121011
........................................................................................................................................................................ACCACATGATTCGGCTTT......................................................................................................18188.0088230020500000001000000003201100011021200100000000000000000000000012037661291120001
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21186.008600735000000000000000000000000000020100001000000000000000000000000001100000000011
....................................................................................................................................................................TAGCACCACATGATTCGGCG........................................................................................................20178.0078153800000000000000000000000000000000000000001010010002241011101000022001010200100
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGT.....................................................................................................23172.00723063013000000000000010011010133621122030000000000000000000000000182242021011013
........................................................................................................GCCCGGATACTGTGTGTGTTGCGC----TG..........................................................................................................................................................26169.006910000000000000000000000000010000000000000000000000000000000000001000101660181600000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAG....................................................................................................24165.0065002110000000000000000000100013111001003000000000000000000000010001014500010031158
........................................................................................................GCCCGGATACTGTGTGTGTTGT..................................................................................................................................................................22163.0063000000000001220000001000100001000000111000000000000000000000000003531002101381411
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................22159.00591081001000001000000010011231351530111490000000001000000000000000300000000010000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................23158.00587101000000000000000030011010101102001010010000000001000000100100042047142501020
........................................................................................................GCCCGGATACTGTGTGTGTTA...................................................................................................................................................................21157.00570000000000000100000000000001000000101000000000000000000000000000076700000038877
........................................................................................................................................................................ACCACATGATTCGGCTTA......................................................................................................18152.00521000100000000000000000000010000110110030000000000000000000000000002063636840022
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTTA....................................................................................................24145.00450021000000000000000000001020603410110001000000000000010000000000063000000003315
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTTC....................................................................................................24145.00451022111000000000000040010020542803010002000000010000000000000000000100011001000
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22144.004400240000000000000000000000001000000010000000000010011100100000000000000000003181
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTCC....................................................................................................24143.004310100000000000000000000011000563804000000000000000000000000000100100000200000000
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19140.004000282100100000000000000001100000010100100000000000000000000000000200000010000000
........................................................................................................GCCCGGATACTGTGTGTGTTGAA.................................................................................................................................................................23139.00390000000000000000000000000000000000000000000000000000000000010000034612000064255
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTTG....................................................................................................24132.00320030000000000000000010010000242300000100000000000000000000000000030230201002011
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCAA....................................................................................................24131.00310020000000011000000000030000000010002300000000000000000000000000073000020011022
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGA.....................................................................................................23131.00312232000000000000000010011000000000000100000000000000000000000000004201000012152
....................................................................................................................................................................TAGCACCACATGATTCGGCTGG......................................................................................................22130.003062100000000001000000000000000000000000000000000000000000000001000000001000000000
........................................................................................................GCCCGGATACTGTGTGTGTTT...................................................................................................................................................................21128.00280000100011011100000000010101000000200000000000000000000000000000023400000011033
....................................................................................................................................................................TAGCACCACATGATTCGGCTTACA....................................................................................................24127.00270000001000000000000000010101000000058520010000000000000000000000001000000001000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAC....................................................................................................24127.00270011000000000000000000000000000010010000000000000000000000000000066300000010124
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTCA....................................................................................................24126.00260022100000001000000000030002010000111001000000000000000000000000003000010001041
........................................................................................................GCCCGGATACTGTGTGTGTTAAA.................................................................................................................................................................23126.00260000000000000000000000000000000000001000000000000000000000000000045200000002057
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAG....................................................................................................24126.00260010000000000000000000021010000010102000000000000000000000000000023022001322000
........................................................................................................GCCCGGATACTGTGTGTGTTGCAT----............................................................................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000001100000054546
........................................................................................................GCCCGGATACTGTGTGTG......................................................................................................................................................................18125.00250001000100000000000000100000020100000010000000000000000000000000000120502012023
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22124.00241301100001000000000110000000111001110011001000000000000000001000020000001010001
........................................................................................................GCCCGGATACTGTGTGTGTTAA..................................................................................................................................................................22124.00240000000000000000000000000000000000000000000000000000000000000000003600000053043
....................................................................................................................................................................TAGCACCACATGATTCGGAA........................................................................................................20122.00220000000000000000000000000000000000000000000000000000000000000000033300000002074
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................23122.00220012101000000000000000010021100110101020000000000000001001000000011000000100001
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................21122.002201122001000000000000000000010000020000000000000000000000000000002000000000001000
........................................................................................................GCCCGGATACTGTGTGTGTTGCAG----............................................................................................................................................................24120.00200000000000000000000000000000000000000000000000000000000000000000002000000003627
.....................................................................................................................................................................AGCACCACATGATTCGGCTTC......................................................................................................21119.001900161000000000000000000000000000000000010000000000000000000000001000000000000000
...........................................................................................................CGGATACTGTGTGTGTTGCG.................................................................................................................................................................20118.00180000000000000000000000000000010000000000000000000110000000000000000050043300000
....................................................................................................................................................................TAGCACCACATGATTCGGAAA.......................................................................................................21117.00170000000000000000000000000000000000001000000000000000000000000000023000000003143
.........................................................................................................................................................................CCACATGATTCGGCTTA......................................................................................................17116.00160000000000000000000000000000000000000000000100000000000000000000011400000022131
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCTC....................................................................................................24116.00165010110000000000000000000100000201000000000000000000000000000000000000201000001
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGAA....................................................................................................24116.00160000000000001000000000000010000100000110000000000000000000000000032100000001031
....................................................................................................................................................................TAGCACCACATGATTCGGCTCA......................................................................................................22116.00160001200000000000000000001000001200022100000000000000000000000000020000000000110
....................................................................................................................................................................TAGCACCACATGATTCGGCTTATA....................................................................................................24115.00150010000000000000000000010010110000023110000000000000000000000000020000000001000
........................................................................................................GCCCGGATACTGTGTGTGTTGCT.................................................................................................................................................................23115.00150002000000000000000000000000000000000000000000000000000000000000012200000001322
.........................................................................................................CCCGGATACTGTGTGTGTTGC..................................................................................................................................................................21114.00140020000000000000000000000000000000000000000000000000000000000000000210102000132
....................................................................................................................................................................TAGCACCACATGATTCGGA.........................................................................................................19114.00140000000010000000000000010000000000000100000000000000000000000100031000000011013
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................21114.00143004000000000000000020000000000000000000000000000000000000000000000000003010001
........................................................................................................GCCCGGATACTGTGTGTGTTGCC.................................................................................................................................................................23113.00130000000000000000000020000010110001000000000000000000000000000000001000000102120
........................................................................................................................................................................ACCACATGATTCGGCTTC......................................................................................................18113.00134000100000000000000000000000000100000000000000000000000000000000000000103300000
.........................................................................................................................................................................CCACATGATTCGGCTTT......................................................................................................17113.00130000000000000000000000000000000000000000012101000011010100000000000100000010011
.........................................................................................................................................................................CCACATGATTCGGCT........................................................................................................15112.00120000000000000000000000000000000000000000002001101140001001000000000000000000000
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................22112.00121300000000000000000000010000001000100010000000000000000000000000010100100000001
..........................................................................C-AACA-----------GCTGTACAACGAA........................................................................................................................................................................................18112.00120000000000000000000000020000000000000000000000000000000000000000000012030300010
.........................................................................................................CCCGGATACTGTGTGTGTTGCG.................................................................................................................................................................22112.00120020000000000000000000000000000000000000000000000000000000000000000021110500000
....................................................................................................................................................................TAGCACCACATGATTCGGCAAA......................................................................................................22111.00110000000000000000000000001010000000001000000000000000001000000000003000000003100
....................................................................................................................................................................TAGCACCACATGATTCGGCAC.......................................................................................................21110.00100001000000000000000000000000000000000000000000000000000000000000011000000001231
droMoj3
TT--------------ATCCTTGA-----------T----GTCCTTGAC-GAATGTCAAACAGCTTGGCTGGCTT-GGTA-----------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCGC----TGTTT-------------T--GAG----TACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCTC------ATTCAACAAATTAGG---CATCA---ATTT----------TATAGATTAATACGTGCCAA-----T-----TCTAT-----ATSizeHit CountTotal NormTotalM046

Female-body
V041

Embryo
V049

Head
V056

Head
M060

Embryo
V110

Male-body
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................211338328.00338328405772388362943432860321359
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................21116664.0016664204911166173
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................22115042.001504219881253504351209252
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................2018620.0086209411354215136494116
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................2213762.003762745364452286916
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................2012700.00270020631326301
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................2211980.00198030172026158442
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................2211419.00141925745506110015
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................2011134.001134010011330
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................211995.0099512961398641
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAA.....................................................................................................231933.0093339213045222
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................211789.007893088734612
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAAA....................................................................................................241577.00577473300974
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................231538.00538801117214063
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................191309.0030958818122103
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTA.....................................................................................................231233.00233434111831
........................................................................................................GCCCGGGTTTTGTGTGTGCCGCG.................................................................................................................................................................231180.001808303937633
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................211138.00138105000330
........................................................................................................GCCCGGGTTTTGTGTGTGCCG...................................................................................................................................................................211131.00131122531321912
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................191129.0012963011613
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTAA....................................................................................................24174.007450000240
....................................................................................................................................................................TAGCACCACATGATTCGGCTAA......................................................................................................22168.006836101282
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................19161.006151000100
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................21159.005947000120
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................22157.00575400030
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTC.....................................................................................................23154.00549010440
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAT.....................................................................................................23154.005417011341
.....................................................................................................................................................................AGCACCACATGATTCGGCTC.......................................................................................................20152.00522000500
........................................................................................................GCCCGGGTTTTGTGTGTGCCGC..................................................................................................................................................................22144.00444860233
....................................................................................................................................................................TAGCACCACATGATTCGGCTGT......................................................................................................22141.00410141332
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18137.003712412441
.......................................................................................................................................................................CACCACATGATTCGGCTT.......................................................................................................18133.003314001171
....................................................................................................................................................................TAGCACCACATGATTCGGCCC.......................................................................................................21132.00320000320
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAAA....................................................................................................23128.00282800000
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGT.....................................................................................................23126.00264211180
....................................................................................................................................................................TAGCACCACATGATTCGGCTAAA.....................................................................................................23125.00251600072
.....................................................................................................................................................................AGCACCACATGATTCGGCTTAA.....................................................................................................22124.00242300010
....................................................................................................................................................................TAGCACCACATGATTCGGCA........................................................................................................20124.00246102123
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGG.....................................................................................................23123.00237000160
....................................................................................................................................................................TAGCACCACATGATTCGGCAA.......................................................................................................21122.00229000130
....................................................................................................................................................................TAGCACCACATGATTCGGCTAT......................................................................................................22120.00207000130
.....................................................................................................................................................................AGCACCACATGATTCGGCTA.......................................................................................................20119.00191900000
.....................................................................................................................................................................AGCACCACATGATTCGGCTTC......................................................................................................21119.00191600030
........................................................................................................GCCCGGGTTTTGTGTGTGCC....................................................................................................................................................................20118.0018125262
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................23118.00181200150
....................................................................................................................................................................TAGCACCACATGATTCGGCTTAC.....................................................................................................23115.0015600090
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................23114.0014900032
.....................................................................................................................................................................AGCACCACATGATTCGGCTTG......................................................................................................21113.00131000030
....................................................................................................................................................................TAGCACCACATGATTCGGCTTGA.....................................................................................................23112.0012401070
....................................................................................................................................................................TAGCACCACATGATTCGGCTGC......................................................................................................22112.00120000120
....................................................................................................................................................................TAGCACCACATGATTCGGCTGA......................................................................................................22111.0011111170
....................................................................................................................................................................TAGCACCACATGATTCGGCAC.......................................................................................................21110.00100000100
......................................................................................................................................................................GCACCACATGATTCGGCTC.......................................................................................................19110.00100000100
......................................................................................................................................................................GCACCACATGATTCGGCTTT......................................................................................................2019.009500040
droGri2
CAAT--------CGTTATCCCAGA-----------T----GTCCTTGAC-GAATGTCAAATG------------------------------CTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACAC--ATAAATA----TACGTAGCACCACATGATTCGGCTTCGTGGTGCTAGCAA------CTC---------------CATCG---CCAG-----------------TT------AGATAGATAAA-TCAATCAA-----GATSizeHit CountTotal NormTotalM041

Female-body
V109

Male-body
....................................................................................................................................................................TAGCACCACATGATTCGGCTT.......................................................................................................2112162.0021621466696
....................................................................................................................................................................TAGCACCACATGATTCGGCTTC......................................................................................................221229.00229127102
....................................................................................................................................................................TAGCACCACATGATTCGGCTTT......................................................................................................221211.0021117338
....................................................................................................................................................................TAGCACCACATGATTCGGCT........................................................................................................201141.0014110239
.....................................................................................................................................................................AGCACCACATGATTCGGCTT.......................................................................................................20190.0090900
....................................................................................................................................................................TAGCACCACATGATTCGGC.........................................................................................................19121.0021192
....................................................................................................................................................................TAGCACCACATGATTCGGCTG.......................................................................................................21116.0016151
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCT.....................................................................................................23116.001697
........................................................................................................GCCCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................23115.0015114
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCA.....................................................................................................23113.001358
.....................................................................................................................................................................AGCACCACATGATTCGGCTTT......................................................................................................21113.0013130
....................................................................................................................................................................TAGCACCACATGATTCGG..........................................................................................................18111.0011110
....................................................................................................................................................................TAGCACCACATGATTCGGCTTTT.....................................................................................................23111.0011110
....................................................................................................................................................................TAGCACCACATGATTCGGCTTA......................................................................................................2216.00633
.....................................................................................................................................................................AGCACCACATGATTCGGCT........................................................................................................1915.00550
.....................................................................................................................................................................AGCACCACATGATTCGGCTTC......................................................................................................2115.00550
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCC.....................................................................................................2314.00422
......................................................................................................................................................................GCACCACATGATTCGGCTT.......................................................................................................1914.00431
........................................................................................................GCCCGGATTCTGTGTGTGCTG...................................................................................................................................................................2114.00431
.......................................................................................................AGCCCGGATTCTGTGTGTGCT....................................................................................................................................................................2113.00321
...............................................................................................................................TTTGCTGATTTGCCATACAC--AT.........................................................................................................................................2213.00330
....................................................................................................................................................................TAGCACCACATGATTCGGCTA.......................................................................................................2113.00330
........................................................................................................GCCCGGATTCTGTGTGTGCTGCGT................................................................................................................................................................2412.00220
........................................................................................................GCCCGGATTCTGTGTGTGCTGC..................................................................................................................................................................2212.00211
.......................................................................................................AGCCCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................2412.00211
....................................................................................................................................................................TAGCACCACATGATTCGGCTTG......................................................................................................2212.00220
...................................................................................................................................................................GTAGCACCACATGATTCGGCT........................................................................................................2111.00110
..........................................................................................................CCGGATTCTGTGTGTGCTGCG.................................................................................................................................................................2111.00110
................................................................................................................................TTGCTGATTTGCCATACAC--AT.........................................................................................................................................2111.00110
.....................................................................................................................................................................AGCACCACATGATTCGGCTTCC.....................................................................................................2211.00110
....................................................................................................................................................................TAGCACCACATGATTCGGCC........................................................................................................2011.00101
.....................................................................................................................................................................AGCACCACATGATTCGGCTTG......................................................................................................2111.00110
...............................................................................................................................TTTGCTGATTTGCCATACAC--...........................................................................................................................................2011.00110
.....................................................................................................................................................................AGCACCACATGATTCGGC.........................................................................................................1811.00110
.......................................................................................................AGCCCGGATTCTGTGTGTGCTGC..................................................................................................................................................................2311.00101
.....................................................................................................................................................................AGCACCACATGATTCGGCTG.......................................................................................................2011.00110
....................................................................................................................................................................TAGCACCACATGATTCGGCTC.......................................................................................................2111.00101
.........................................................................................................CCCGGATTCTGTGTGTGCTGC..................................................................................................................................................................2111.00110
....................................................................................................................................................................TAGCACCACATGATTCGGCTTCG.....................................................................................................2311.00110
.........................................................................................................CCCGGATTCTGTGTGTGCTG...................................................................................................................................................................2011.00110
.....................................................................................................................................................................AGCACCACATGATTCGGCTTA......................................................................................................2111.00110
...............................................................................................................................TTTGCTGATTTGCCATACAC--ATAAATA----T...............................................................................................................................2811.00110
.......................................................................................................AGCCCGGATTCTGTGTGTGCTG...................................................................................................................................................................2211.00101
.....................................................................................................................................................................AGCACCACATGATTCGGCTTTT.....................................................................................................2211.00110
...................................................................................................................................................................GTAGCACCACATGATTCGGCTT.......................................................................................................2211.00110

Generated: 10/20/2015 at 07:47 PM