ID:

dan_1391

 Coordinate:

scaffold_13117:4737621-4737716 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.3 -12.0 -11.7

Flybase annnotation

CDS [Dana\GF20821-cds]; exon [dana_GLEANR_4070:5]; CDS [Dana\GF20821-cds]; exon [dana_GLEANR_4070:4]; intron [Dana\GF20821-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------##################################################
GGAGGATAGCGAGTATGTGGACTTGGATACGGCCACTTTCATGACGAACGGTGGTTGTTTGGCGTGAGGAAGGGTGCCGGAGGATAGGGAGCGAGAACGAGAACGAGAACGAGAACGATCTGGCGACCGTGACATACTCCTCCCAGCCTTCAATCATCAGCAGACCGCACCAAACCTTCCCCCCCTACCGAATAAT
***************************************************************.......................((..((.(((.((....((....))....)).))).))..))..****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V106
head
 V039
embryo
 V055
head
...............................................................GTGAGGAAGGGTGCCGGAGG................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................CAAACCTTCCCCCCCTACCGA..... 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................ACGAGAACGATCTGGCGACCGT.................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
...................................................................................ATAGGGAGCGAGAACGAGAA............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................GAGAACGAGAACGAGAACGATCTGGC........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................GACATACTCCTCCCAGCCTTC............................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................TGCCGGAGGATAGGGAGCGA...................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.....................................TTCATGACGAACGATGGTT............................................................................................................................................ 19 1 1 1.00 1 0 0 0 1 0 0
......................................................................AGGGTGCCGGAGGATAGGG........................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
....................................................GGTTGTTTGGCGTGAGGAA............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
......................TTGGATACGGCCACTTTCATGACG...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
.............................................GAACGGTGGTTGTTTGGCG.................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
....TATAGCGAGTATGTGGACT............................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
.....ATAGCGAGTATCTGGACTTGG.......................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
....................................................GGTTGTTTGGCGTGAGGAAGGGTGCC...................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................GAGAACGAGAACGATCTGGCGACCGT.................................................................. 26 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................AGGGAGCGCGAACGAGAACGAGAAC...................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.....................................................GTTGTTTGGCGTGAGGAAGGGTGCCG..................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0
..............................GGCCACTTTCATGACGAACGGT................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................GGATAGGGAGCGAGAACGAGAAC............................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0
........GCGAGTATGTGGACTTGG.......................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
....................................................................................TAGGGAGCGAGAACGAGAACGAGA........................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................TTTGCGTGAGGAAGGGTGC....................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................................GAACGAGAACGATCTGGC........................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
..................................................................................GATAGGGAGCGAGAACGAGAA............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................CGAGAACGATCTGGCTACCGT.................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
................................................CGGTGGTTGTTTGGCGTGA................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................GACATACTCCTCGCAGCGTGC............................................. 21 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................CGATGACGATCTGGCGACC.................................................................... 19 2 4 0.25 1 0 1 0 0 0 0
...............................................................TTGAGGAAGCCTGCCGGAGGA................................................................................................................ 21 3 4 0.25 1 0 0 1 0 0 0
...............................................................GTGGGGAAGGGTGGCGGGGGAT............................................................................................................... 22 3 5 0.20 1 0 0 0 0 1 0
..............................................................................................GAACGAGAACGAGAACGAG................................................................................... 19 0 14 0.07 1 0 0 1 0 0 0
......................................................................................................................................................................CCACCAAACCTTCCCCCACA.......... 20 3 16 0.06 1 0 1 0 0 0 0
.....................................CTCATGACGAACGCTGGC............................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0
........................................................ATTTGGCGTGAGGGAGGGA......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
..............................................................................GTAGGATGGGGAGCGAGTA................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CCTCCTATCGCTCATACACCTGAACCTATGCCGGTGAAAGTACTGCTTGCCACCAACAAACCGCACTCCTTCCCACGGCCTCCTATCCCTCGCTCTTGCTCTTGCTCTTGCTCTTGCTAGACCGCTGGCACTGTATGAGGAGGGTCGGAAGTTAGTAGTCGTCTGGCGTGGTTTGGAAGGGGGGGATGGCTTATTA
******************************************************************.......................((..((.(((.((....((....))....)).))).))..))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V106
head
 M044
female body
 V039
embryo
......................................................................................................................................................................CGTGCTTTGGGAGGGGGGGA.......... 20 2 1 2.00 2 2 0 0 0
......................................................................................................................................GTGAGGAGGGTCTGAAGTT........................................... 19 2 1 1.00 1 1 0 0 0
........................................................................................................................ACCGCTGGCACTTCATGAG......................................................... 19 2 1 1.00 1 0 1 0 0
.......................................................................................CCTCGCTCTTGCTCTTGCTCTTGC..................................................................................... 24 0 2 0.50 1 0 0 1 0
.....................................................................................................................................TATGAGGGGGGTCGTAGGTT........................................... 20 3 4 0.25 1 1 0 0 0
......................................................................................................................................................................CGTGGTTTTGAGGGGGGGG........... 19 2 4 0.25 1 0 0 0 1
........................................................................................................................ACCGCTGGCACTGTCTGA.......................................................... 18 1 4 0.25 1 0 1 0 0
.....................................................................................................................................TATGAGGGGGGTCGGGGGTT........................................... 20 3 20 0.15 3 3 0 0 0
........................................................................................................................................................................TGCTTTGGGAGGGGGGGA.......... 18 2 8 0.13 1 1 0 0 0
.....................................................................................................................................TATGAGGGGGGTCTGAGGTT........................................... 20 3 8 0.13 1 1 0 0 0
............................................................................................................................................................................TTGGAAAGGGGGGAAGGC...... 18 2 9 0.11 1 1 0 0 0
.........................................................................................................TGTTTCTCTTGCTCGACCGCT...................................................................... 21 3 10 0.10 1 0 0 0 1
.......................................................................................................................................................................GTGCTTTGGGAGGGGGGG........... 18 2 12 0.08 1 1 0 0 0
.......................................................................................................................................TGAGGAGGGTCTGAGGTT........................................... 18 2 12 0.08 1 1 0 0 0
......................................................................................................................................................................CGCGGTTTGGAAGAGGGGGT.......... 20 3 17 0.06 1 1 0 0 0
.......................................................................................................................................................................GTGCATTGGGAGGGGGGGA.......... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13117:4737571-4737766 - dan_1391 GGAGGATA---------GCGAGTATGTGGACTTGGATACGG---CCAC---TTTCATGACGAACG--GTGGTTGTTTGGCGTGAGGAAGGGTGCCGGAGGATAGGGA-------GCGAGAAC------------------------------GAGAACGAGAAC----GAGAACGATCTGGCGACCGTGACATACTCCTCCCAGCCTTCAATCATCAG---------------------------------------------------------------------CA------------------------------------GA--CCGCACCAAAC-------CTTCC--CCCCCTACCG-----AATAAT---------------
droBip1 scf7180000395814:39975-40176 - GGAAGACA---------GCGAATATGTGGACTTGGACTCGG---CCACCGCTTTCATGACGAACG--GCGGTTGTTTGGCGTGAGGAAGGGTGCCGGAGGATAGGGA-------GCACGAAC------------------------------G------AGAGC----GAGAGCTATCTGGCGACCGTGACATACTGCTCCCAACCTTCAATCAGCAG--CAG-------------------------------------------------------------------------------------------------------T--CCGCACCCACCCTTCCGAATTCCAATTCCCATACAAG-------CA-------------CT
droKik1 scf7180000302798:497178-497459 + GGACGATGGCGTTGCTGGGGAGTATGTCGACTTGGACACAG---CCACCGCGTTCATGACCAACG--GGGGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATCGAGAAAGGGAACGGGAAGGGGAACGTGAACGGGAACGTGAAC----GTGAACGAGATCGAGACCGTGACCTGATGCTACCCGCCTTCGAGCAGTCCACCGGCCATCATCAGCAAGCCCAA----CACCAGCATCATCATCATCAGCAGCAGCA-----------------GCA---G---CAATCACAG---------------AAACC----------------G-----------CAGCA-----GGTGAC---------------
droFic1 scf7180000454072:1975558-1975795 + GGACGACGGCG------GGGAGTACGTGGACCTGGACACGG---CCACCGCCTACATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGAAC------------------------------G----------------------AGACTGCGACCGCGACCTGCTGCTACCAGCCTTTGATCAGTCCAATAGCCACCAGCAGCAGCAGCAA----CATCAGCAGCAGCA--------------------------------GCAGCAG---CGACTAGAACACCGACAAC-------AGC----------------AGTC--ACACCCTTCCGAGAATGAGGAT---------------
droEle1 scf7180000491043:242839-243061 + CGAGGATGGCG------GCGAATATGTGGACTTGGACTCGG---CCACCGCCTTCATGAACAATG--GCAGTTGCCTGGCGTGAGGAAGGGCACC--------------------------------------------------------------------------------------------------GTTGCTCCTAGCCTTCGACCACAACAACAGCCACCAGCAACAGGAGCAA----CATCAGCAGCAGCAGCAACAGGAGCAACATCAGCAGCA--------GCA---G---------------------------CAGCT----------------GCAGCAACATCCTTCAGAGAAAGAGGAAGATCCGCCGGAAAGT
droRho1 scf7180000779334:5798-5981 - AGAGGACGGCG------GGGAGTATGTGGACTTGGACACGG---CCACCGCCTTTATGAGCAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTCCTGGCCTTCGACCAGTCCAGCGGTCATCAGCAACAGGAGCAA----CATCAGCAGCAAC-----------------------------------A---G---------------------------C-------------------------------------------AAGAT---------------
droBia1 scf7180000301760:2274632-2274836 + GGAAGG---CG------GCGAGTATGTGGATCTGGACGCAG---CCACCGCCTTTATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCACCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTCCTAGCCTTCGATCAGCCCAACAGCCAACAGGAGGAGCAACAC----CATCAGCA--------------------------------------GCA---G---------------------------CAGCC----------------ACTGCAACATCCTGTTGAGAAAGAGGAG---------------
droTak1 scf7180000415289:307366-307552 - GGAGGATTGCG------GCGAGTATGTGGATTTGGACACGG---CCACCGCTTTTATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------AGAAAGGGACCGCGACCTGCTGCTCCTAGCCTTCGATCAGCCG------------------------------------------------------------------CAGCAACAGCA---A---------------------------CAGCG----------------GGAGCAACCTACTGCAGAGAAG---GAG---------------
droEug1 scf7180000408973:207226-207418 + GGACGACGGCG------GGGAGTATGTGGACCTGGATTCAG---CCACCGCGTTTATGAACAACG--GTAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCAACCTGCTGCTCCTAGCCTTCGAACAGTCCAACAGCCAACA---------------------------------------------------------GCAGCAGCA---G---------------------------CAGCC----------------ATTGCACAACCCTGTTGAGAAAGAGGAA---------------
dm3 chrX:1140434-1140620 - GGAGGAGGGCG------GCGAGTATGTCGACCTGGACTCAG---CCACTGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTTCCAGCCTTCGAACAGCCAAACACT------------------------------------------------------------CAGCAAC---A---G---------------------------CAAGC----------------AGTCCAATACCCGGCCGGGAAGGAAGAG---------------
droSim2 x:1029810-1029999 - GGAGGAGGGCG------GCGAGTATGTCGACCTGGACTCAG---CCACTGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTTCCAGCCTTCGAACAGCCAAACACT------------------------------------------------------------CAGCAACAGCA---G---------------------------CAAGC----------------AGTCCAATACCCGGCCGGGAAGGAAGAG---------------
droSec2 scaffold_10:974135-974324 - GGAGGAGGGCG------GCGAGTATGTCGACCTGGACTCAG---CCACTGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTTCCAGCCTTCGAACAGCCAAACACT------------------------------------------------------------CAGCAACAGCA---G---------------------------CAAGC----------------AGTCCAATACCAGGCCGGGAAGGAAGAG---------------
droYak3 X:1055045-1055242 - GGAGGAGGGCG------GCGAGTACGTCGACCTGGACTCAG---CCACCGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G------GGATC----GGGATCGGGATCGAGACCGCGACCTGCTGCTACCAGCCTTCGAACAGCCAAACT-------ACAACAACAACAACACT--------------------------------------CGGCAACAGCA---G---------------------------CAATC----------------AGT----------------------------------------
droEre2 scaffold_4644:1126768-1126960 - GGAGGAGGGCG------GCGAGTACGTCGACCTGGACTCAG---CCACCGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTACCAGCCTTCGAACAGCCAAACAACAGT---------------------------------------------------------CAGCAACAGCA---G---------------------------CAACC----------------AGACCAATACCCGGCCGGGAAGGAAGAG---------------
dp5 XL_group1a:4940274-4940496 + GGGCGATGGCA------CGGACTATGTGGATCTGGATACCGGTGCCGCTGCCTTCCTGACCAATG--GGGGCTGCCTGGCGTGAGGGCGGGCCCAGC-----GGGCATCGGCACCGGCAAGC------------------------------GCAAACGCACACGAACGTGATCGCGATCGCGATCGCGATCTCCTGCTACTGGCCTTCGATCAGGATGGTGGCCAGGAGGGGGAGCAGCAG----CAGTCGTC--------------------------------------------G---------------------------TCGT----------------------------------CGTCGCACAGG---------------
droPer2 scaffold_27:464555-464632 + GGAGAGGGAGC------GCGAG-----------------------------------------------------------------AGGGAGAGGG---AACGGGA-------ACGGGAAC------------------------------G----------------GGAACGG------GATAGAGAG-------------CAATCGA--A------------------------------------------------------------------------------TCA---G------------------------CAGC--------------------------------------------CCGC---------------
droWil2 scf2_1100000004590:4420596-4420785 - dwi_1854 AATTAATAATA------ATAATATAATAAACG-----ACGA---TCAC---GATGATGATGA-CGATGCGGCGGCAGGACGTGATGAAC-----T----------------------GGATG-------------CCGATGGAGATGTGGATGATGATGAGGAT----GAA-----------GATG-----ATATTGA---TGGCGATCGGCAAACAG------------------------------------------------------------------AAGTGGAAGTA---TCCATCACTAGTACAC------------C---------AGAT-------GTTGC--CGCTCTATTG-----GCTGGC---------------
droVir3 scaffold_12928:5219321-5219465 + CGATGAAA---------CCGATTTTGTGGATCTAGATACGGGCGCCGCTGCCTTTATGCATAACG--GCGGCTGCCTGGCGTGAGATCGGGCTGC-----CC----A-------GCGTGCTG------------------------------C----------------------C------GATCACGAGCTGTTGC---TAGCCTACGAACAGCAG------------------------------------------------------------------CAGGAGCAGCA---G---------------------------C----------------------------------------------AG---------------
droMoj3 scaffold_6359:3729068-3729265 + GGACGATGAGG------CGGACTTTGTCGATCTAGATACGGGCTCCGCCAATTTTATGACCAATG--GCGGCTGCCTGGCGTGAGATCGGGCCC------------A-------ACGGGCTG------------------------------C----------------------C------GATCATGAGCTGTTGC---TGGCGTACGATCAGGAG--C----TGCAGCTGGATGAGCAA----CAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA--------------GCAGCAG---------------------------CAGC--------------------------------------GGGAGCA---------------
droGri2 scaffold_14853:9897680-9897847 + GGACGATGATG------CCGATTTCGTGGATCTGGATACGGGTGCCGCAGCCTTTATGACTAATG--GCGGCTGCCTGGCGTGAGATCGGGCCC------------A-------ACGCGCTG------------------------------C----------------------C------GATCACGAACTGTTGC---TGGCATTCGATCAGCAC------------------------------------------------------------------CAGGAGCAGCA---GCAGAGCAGAACAC------AACAGCAGCA--------------------------------------------AGA---------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGAGGATA---------GCGAGTATGTGGACTTGGATACGG---CCAC---TTTCATGACGAACG--GTGGTTGTTTGGCGTGAGGAAGGGTGCCGGAGGATAGGGA-------GCGAGAAC------------------------------GAGAACGAGAAC----GAGAACGATCTGGCGACCGTGACATACTCCTCCCAGCCTTCAATCATCAG---------------------------------------------------------------------CA------------------------------------GA--CCGCACCAAAC-------CTTCC--CCCCCTACCG-----AATAAT---------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................GTGAGGAAGGGTGCCGGAGG..................................................................................................................................................................................................................................................................................................2012.002200000
...............................................................................................................................................................................................................................................................................................................................................CAAAC-------CTTCC--CCCCCTACCG-----A....................2111.001100000
..................................................................................................................................................................AC----GAGAACGATCTGGCGACCGT..........................................................................................................................................................................................................2211.001010000
....................................................................................................ATAGGGA-------GCGAGAAC------------------------------GAGAA.........................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................................GAGAACGAGAAC----GAGAACGATCTGGC................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................GACATACTCCTCCCAGCCTTC.....................................................................................................................................................................................2111.001100000
...........................................................................................TGCCGGAGGATAGGGA-------GCGA................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................AGGGTGCCGGAGGATAGGG............................................................................................................................................................................................................................................................................................1911.001000010
.....................................................................GGTTGTTTGGCGTGAGGAA..............................................................................................................................................................................................................................................................................................................1911.001100000
...............................TTGGATACGG---CCAC---TTTCATGACG.........................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................GAACG--GTGGTTGTTTGGCG.....................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................GGTTGTTTGGCGTGAGGAAGGGTGCC.......................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................................................................GAGAAC----GAGAACGATCTGGCGACCGT..........................................................................................................................................................................................................2611.001000010
......................................................................GTTGTTTGGCGTGAGGAAGGGTGCCG......................................................................................................................................................................................................................................................................................................2611.001000010
.......................................GG---CCAC---TTTCATGACGAACG--GT.................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................GGATAGGGA-------GCGAGAAC------------------------------GAGAAC........................................................................................................................................................................................................................................2311.001000010
.................GCGAGTATGTGGACTTGG...................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................................TAGGGA-------GCGAGAAC------------------------------GAGAACGAGA....................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................GAAC----GAGAACGATCTGGC................................................................................................................................................................................................................1811.001100000
...................................................................................................GATAGGGA-------GCGAGAAC------------------------------GAGAA.........................................................................................................................................................................................................................................2111.001010000
...............................................................CG--GTGGTTGTTTGGCGTGA..................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................GAAC------------------------------GAGAACGAGAAC----GAG...........................................................................................................................................................................................................................19140.071000010
droBip1
GGAAGACA---------GCGAATATGTGGACTTGGACTCGG---CCACCGCTTTCATGACGAACG--GCGGTTGTTTGGCGTGAGGAAGGGTGCCGGAGGATAGGGA-------GCACGAAC------------------------------G------AGAGC----GAGAGCTATCTGGCGACCGTGACATACTGCTCCCAACCTTCAATCAGCAG--CAG-------------------------------------------------------------------------------------------------------T--CCGCACCCACCCTTCCGAATTCCAATTCCCATACAAG-------CA-------------CTSizeHit CountTotal NormTotal
No Reads
droKik1
GGACGATGGCGTTGCTGGGGAGTATGTCGACTTGGACACAG---CCACCGCGTTCATGACCAACG--GGGGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATCGAGAAAGGGAACGGGAAGGGGAACGTGAACGGGAACGTGAAC----GTGAACGAGATCGAGACCGTGACCTGATGCTACCCGCCTTCGAGCAGTCCACCGGCCATCATCAGCAAGCCCAA----CACCAGCATCATCATCATCAGCAGCAGCA-----------------GCA---G---CAATCACAG---------------AAACC----------------G-----------CAGCA-----GGTGAC---------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGACGACGGCG------GGGAGTACGTGGACCTGGACACGG---CCACCGCCTACATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGAAC------------------------------G----------------------AGACTGCGACCGCGACCTGCTGCTACCAGCCTTTGATCAGTCCAATAGCCACCAGCAGCAGCAGCAA----CATCAGCAGCAGCA--------------------------------GCAGCAG---CGACTAGAACACCGACAAC-------AGC----------------AGTC--ACACCCTTCCGAGAATGAGGAT---------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGAGGATGGCG------GCGAATATGTGGACTTGGACTCGG---CCACCGCCTTCATGAACAATG--GCAGTTGCCTGGCGTGAGGAAGGGCACC--------------------------------------------------------------------------------------------------GTTGCTCCTAGCCTTCGACCACAACAACAGCCACCAGCAACAGGAGCAA----CATCAGCAGCAGCAGCAACAGGAGCAACATCAGCAGCA--------GCA---G---------------------------CAGCT----------------GCAGCAACATCCTTCAGAGAAAGAGGAAGATCCGCCGGAAAGTSizeHit CountTotal NormTotal
No Reads
droRho1
AGAGGACGGCG------GGGAGTATGTGGACTTGGACACGG---CCACCGCCTTTATGAGCAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTCCTGGCCTTCGACCAGTCCAGCGGTCATCAGCAACAGGAGCAA----CATCAGCAGCAAC-----------------------------------A---G---------------------------C-------------------------------------------AAGAT---------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGAAGG---CG------GCGAGTATGTGGATCTGGACGCAG---CCACCGCCTTTATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCACCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTCCTAGCCTTCGATCAGCCCAACAGCCAACAGGAGGAGCAACAC----CATCAGCA--------------------------------------GCA---G---------------------------CAGCC----------------ACTGCAACATCCTGTTGAGAAAGAGGAG---------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGAGGATTGCG------GCGAGTATGTGGATTTGGACACGG---CCACCGCTTTTATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------AGAAAGGGACCGCGACCTGCTGCTCCTAGCCTTCGATCAGCCG------------------------------------------------------------------CAGCAACAGCA---A---------------------------CAGCG----------------GGAGCAACCTACTGCAGAGAAG---GAG---------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGACGACGGCG------GGGAGTATGTGGACCTGGATTCAG---CCACCGCGTTTATGAACAACG--GTAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCAACCTGCTGCTCCTAGCCTTCGAACAGTCCAACAGCCAACA---------------------------------------------------------GCAGCAGCA---G---------------------------CAGCC----------------ATTGCACAACCCTGTTGAGAAAGAGGAA---------------SizeHit CountTotal NormTotal
No Reads
dm3
GGAGGAGGGCG------GCGAGTATGTCGACCTGGACTCAG---CCACTGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTTCCAGCCTTCGAACAGCCAAACACT------------------------------------------------------------CAGCAAC---A---G---------------------------CAAGC----------------AGTCCAATACCCGGCCGGGAAGGAAGAG---------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................CAG---CCACTGCCTTCATGAACA........................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ATC------------------------------G----------------------A------GACCGCGACCTGCTGC................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200
.......................................................................................AGGGCGCCGG---ACAGGGA-------GCGG................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................GCGTGAGGAAGGGCGCCGG---ACAGGGA-------G...................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATGTCGACCTGGACTCAG---CCACT.....................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GCGAGTATGTCGACCTGGACTCAG---CCAC......................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................AGGGCGCCGG---ACAGGGA-------GCGGT...............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....................................................................AGTTGCCTGGCGTGAGGAA..............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................AGGAAGGGCGCCGG---ACAG..............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AACAGCCAAACACT------------------------------------------------------------CAGCAAC---A---............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ATC------------------------------G----------------------A------GACCGCGACCTGCT..................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................GA-------GCGGGATC------------------------------G----------------------A------GACCGC..........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AAGGGCGCCGG---ACAGGGA-------GCGATC..............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAGTTGCCTGGCGTGAGGAAG.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................AGTTGCCTGGCGTGAGGAAGGG...........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TCATGAACAACG--GCAGTTGCCTGGCGATC..................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GAGTATGTCGACCTGGACTCAG---C.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGCCTGGCGTGAGGAAGGGCGCCGG---A.................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................GTCCAATACCCGGCCGGGAAGGAAG.................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................ACAACG--GCAGTTGCCTGGCGT....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................AGGGA-------GCGGGATC------------------------------G----------------------A------GACCG...........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................GCAGTTGCCTGGCGTGAGGAAGG............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................AGTTGCCTGGCGTGAGGAAGGGC..........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CAAC---A---G---------------------------CAAGC----------------AGTCCAATAC.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....................GTATGTCGACCTGGACTCAG---CCACT.....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AAGGGCGCCGG---ACAGGGA-------GC..................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGTTGCCTGGCGTGAGGAAG.............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................GTGAGGAAGGGCGCCGG---ACA...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCG...........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................ATC------------------------------G----------------------A------GACCGCGACCTGCTG.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................TGCCTGGCGTGAGGAAGGGC..........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CCTGCTGCTTCCAGCCTTCGA...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CACT------------------------------------------------------------CAGCAAC---A---G---------------------------CAAGC----------------AGT........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CGGGATC------------------------------G----------------------A------GACCGCGACCTG....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................A------GACCGCGACCTGCTGCTTCC............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........G------GCGAGTATGTCGACCTGGG..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GTTGCCTGGCGTGAGGAAGGGCGC........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................GG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCG...........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATACCCGGCCGGGAAGGAAGA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................TTCCAGCCTTCGAACAGCCAAAC.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GAGTATGTCGACCTGGACTCAG---CCACTGC...................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GTTGCCTGGCGTGAGGAAGG............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................CTGCTTCCAGCCTTCGAACAG...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................CGTGAGGAAGGGCGCCGG---ACA...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................GAGTATGTCGACCTGGACTCA..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................CTTCATGAACAACG--GCAGTTGCCTG........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................G---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GAC.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
GGAGGAGGGCG------GCGAGTATGTCGACCTGGACTCAG---CCACTGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTTCCAGCCTTCGAACAGCCAAACACT------------------------------------------------------------CAGCAACAGCA---G---------------------------CAAGC----------------AGTCCAATACCCGGCCGGGAAGGAAGAG---------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................CACTGCCTTCATGAACAAC......................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...............................................................................................................................................................................................................TCGAACAGCCAAACACT------------------------------------------------------------CAGCAAC...................................................................................................2411.00100100000000000000
..........G------GCGAGTATGTCGACCTGGACT................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................................................................................................................................................TTCGAACAGCCAAACACT------------------------------------------------------------CAGCAACG..................................................................................................2611.00101000000000000000
.............................................................................................................................................................................................................CTTCGAACAGCCAAACACT------------------------------------------------------------C.........................................................................................................2011.00100010000000000000
......................................................................GTTGCCTGGCGTGAGGAAGGGC..........................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..........................TCGACCTGGACTCAG---CCAC......................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................................................................GCCTGGCGTGAGGAAGGGCGCCGG---ACAG..............................................................................................................................................................................................................................................................................................2811.00110000000000000000
.................................................................................TGAGGAAGGGCGCCGG---ACAGGGA-------G...................................................................................................................................................................................................................................................................................2411.00100000000010000000
.....................................................................................................................GGATC------------------------------G----------------------A------GACCGCGACCTGC...................................................................................................................................................................................................2011.00101000000000000000
droSec2
GGAGGAGGGCG------GCGAGTATGTCGACCTGGACTCAG---CCACTGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTTCCAGCCTTCGAACAGCCAAACACT------------------------------------------------------------CAGCAACAGCA---G---------------------------CAAGC----------------AGTCCAATACCAGGCCGGGAAGGAAGAG---------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................GTTGCCTGGCGTGAGGAAGGGC..........................................................................................................................................................................................................................................................................................................2211.0010100
............................................................................................GCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GAC.............................................................................................................................................................................................................2511.0010100
...........................................................................................CGCCGG---ACAGGGA-------GCGGG...............................................................................................................................................................................................................................................................................1811.0010010
.....................GTATGTCGACCTGGACTCAG---C.........................................................................................................................................................................................................................................................................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................CCAATACCAGGCCGGGAAGG....................2011.0011000
.................................................................................................................................................................................................................GAACAGCCAAACACT------------------------------------------------------------CAGC......................................................................................................1911.0011000
droYak3
GGAGGAGGGCG------GCGAGTACGTCGACCTGGACTCAG---CCACCGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G------GGATC----GGGATCGGGATCGAGACCGCGACCTGCTGCTACCAGCCTTCGAACAGCCAAACT-------ACAACAACAACAACACT--------------------------------------CGGCAACAGCA---G---------------------------CAATC----------------AGT----------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................ACGTCGACCTGGACTCAG---CCACCGC...................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...GGAGGGCG------GCGAGTACGTCGACCTGGACT................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
...........................................................................................................................................................................ATCGGGATCGAGACCGCGACCTGCT..................................................................................................................................................................................................2511.00101000000000
........................................................TGAACAACG--GCAGTTGCCTGGC......................................................................................................................................................................................................................................................................................................................2211.00101000000000
........................................................................................................................................................................GGGATCGGGATCGAGACC............................................................................................................................................................................................................1811.00101000000000
............................GACCTGGACTCAG---CCACCGC...................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................GAGGAAGGGCGCCGG---ACA...............................................................................................................................................................................................................................................................................................1811.00101000000000
......................................CAG---CCACCGCCTTCATGAACAAC......................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................GAGTACGTCGACCTGGACTCAG---CCACC.....................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................AGCCTTCGAACAGCCAAACT-------ACAAC............................................................................................................................................................2511.00101000000000
........................................................................................GGGCGCCGG---ACAGGGA-------GCGG................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................CGG---ACAGGGA-------GCGGGATC------------------------------G------GG.....................................................................................................................................................................................................................................2111.00101000000000
...........................CGACCTGGACTCAG---CCACCGCCTT................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.........................GTCGACCTGGACTCAG---CCACCGC...................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................GAGTACGTCGACCTGGACT................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
........................................................................TGCCTGGCGTGAGGAAGGGCGCC.......................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................CAACAACAACACT--------------------------------------CGGCAAC...................................................................................................2011.00101000000000
........................................................................................................................TC------------------------------G------GGATC----GGGATCGGGATC..................................................................................................................................................................................................................20200.05101000000000
droEre2
GGAGGAGGGCG------GCGAGTACGTCGACCTGGACTCAG---CCACCGCCTTCATGAACAACG--GCAGTTGCCTGGCGTGAGGAAGGGCGCCGG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GACCGCGACCTGCTGCTACCAGCCTTCGAACAGCCAAACAACAGT---------------------------------------------------------CAGCAACAGCA---G---------------------------CAACC----------------AGACCAATACCCGGCCGGGAAGGAAGAG---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................GAGTACGTCGACCTGGACT................................................................................................................................................................................................................................................................................................................................................................1912.0020002000
...................GAGTACGTCGACCTGGACTCAG---CCACC.....................................................................................................................................................................................................................................................................................................................................................2711.0010000010
...............................................................................................GG---ACAGGGA-------GCGGGATC------------------------------G----------------------A------GA..............................................................................................................................................................................................................2111.0011000000
......................................................................GTTGCCTGGCGTGAGGAAGGG...........................................................................................................................................................................................................................................................................................................2111.0010100000
.....................................................................AGTTGCCTGGCGTGAGGAAGGGCGCC.......................................................................................................................................................................................................................................................................................................2611.0010000100
..........................................................................................................................................................................................................................AACAACAGT---------------------------------------------------------CAGCAACAGCA---G---------------------------C...............................................................2211.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................CCGGCCGGGAAGGAAGAG---------------1811.0010001000
.................................GGACTCAG---CCACCGCCTT................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.............................................................................GGCGTGAGGAAGGGCGCCGG---ACAGGGA-------G...................................................................................................................................................................................................................................................................................2811.0010000100
.....................GTACGTCGACCTGGACTCAG---C.........................................................................................................................................................................................................................................................................................................................................................2111.0010000100
dp5
GGGCGATGGCA------CGGACTATGTGGATCTGGATACCGGTGCCGCTGCCTTCCTGACCAATG--GGGGCTGCCTGGCGTGAGGGCGGGCCCAGC-----GGGCATCGGCACCGGCAAGC------------------------------GCAAACGCACACGAACGTGATCGCGATCGCGATCGCGATCTCCTGCTACTGGCCTTCGATCAGGATGGTGGCCAGGAGGGGGAGCAGCAG----CAGTCGTC--------------------------------------------G---------------------------TCGT----------------------------------CGTCGCACAGG---------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................CGCGATCTCCTGCTACTGGC.........................................................................................................................................................................................2011.0010100000000
.......................................................................................................................AGC------------------------------GCAAACGCACACGAACGTGATCGC......................................................................................................................................................................................................................2711.0010100000000
....GATGGCA------CGGACTATGTGGATCT.....................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................GGCGGGCCCAGC-----GGGCATCGG.......................................................................................................................................................................................................................................................................................2111.0010100000000
........GCA------CGGACTATGTGGATCTGG...................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................TTCGATCAGGATGGTGGCC.....................................................................................................................................................................1911.0010100000000
..........................................................ACCAATG--GGGGCTGCCTGGCG.....................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................GGCAAGC------------------------------GCAAACGCACACGAACGTGAT.........................................................................................................................................................................................................................2811.0010100000000
......................................................................GCTGCCTGGCGTGAGGGC..............................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................CGATCGCGATCTCCTGCTA..............................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................GATCAGGATGGTGGCCAGG..................................................................................................................................................................1911.0010100000000
...........................GGATCTGGATACCGGTGCCGC......................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................GCAAACGCACACGAACGTGATCG.......................................................................................................................................................................................................................2311.0010000100000
..........................................................................................................ATCGGCACCGGCAAGC------------------------------GCAAACG.......................................................................................................................................................................................................................................2311.0010000100000
.......................................................................................................................................................................................ATCGCGATCTCCTGCTACT............................................................................................................................................................................................1911.0010000100000
....GATGGCA------CGGACTATGTGGAT.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
.......................................................................................................................AGC------------------------------GCAAACGCACACGAACGT............................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................GCGATCTCCTGCTACTGGCC........................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................CGCGATCGCGATCTCCTGCTACTGGC.........................................................................................................................................................................................2611.0010000001000
......................................................................................................................................................................................GATCGCGATCTCCTGCTACTGGC.........................................................................................................................................................................................2311.0010100000000
.........................GTGGATCTGGATACCGGT...........................................................................................................................................................................................................................................................................................................................................................1811.0010010000000
...............................................................................................................................................................................................................................................CAG----CAGTCGTC--------------------------------------------G---------------------------TCGT----------------------------------CG........................1840.2510000100000
droPer2
GGAGAGGGAGC------GCGAG-----------------------------------------------------------------AGGGAGAGGG---AACGGGA-------ACGGGAAC------------------------------G----------------GGAACGG------GATAGAGAG-------------CAATCGA--A------------------------------------------------------------------------------TCA---G------------------------CAGC--------------------------------------------CCGC---------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................GGGAAC------------------------------G----------------GGAACGG------GATAGAG.........................................................................................................................................................................................................2111.001000001
..........C------GCGAG-----------------------------------------------------------------AGGGAGAGGG---AACGGGA-------....................................................................................................................................................................................................................................................................................2311.001000010
................................................................................................G---AACGGGA-------ACGGGAAC------------------------------G----------------GGAACGG------................................................................................................................................................................................................................2460.171000001
.....................................................................................................ACGGGA-------ACGGGAAC------------------------------G----------------GGAAC........................................................................................................................................................................................................................20200.102000002
..................................................................................................................ACGGGAAC------------------------------G----------------GGAACGG------GA..............................................................................................................................................................................................................18200.051000010
................................................................................................G---AACGGGA-------ACGGGAAC------------------------------G----------------GG...........................................................................................................................................................................................................................19200.051000001
.....................................................................................................ACGGGA-------ACGGGAAC------------------------------G----------------GGA..........................................................................................................................................................................................................................18200.051000010
.........................................................................................................GA-------ACGGGAAC------------------------------G----------------GGAACGG------G...............................................................................................................................................................................................................19200.051000001
droWil2
AATTAATAATA------ATAATATAATAAACG-----ACGA---TCAC---GATGATGATGA-CGATGCGGCGGCAGGACGTGATGAAC-----T----------------------GGATG-------------CCGATGGAGATGTGGATGATGATGAGGAT----GAA-----------GATG-----ATATTGA---TGGCGATCGGCAAACAG------------------------------------------------------------------AAGTGGAAGTA---TCCATCACTAGTACAC------------C---------AGAT-------GTTGC--CGCTCTATTG-----GCTGGC---------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................GATGAGGAT----GAA-----------GATG-----ATATTGA---TGGC.........................................................................................................................................................................................2713.00300300
...........................................................................................................................................TGGAGATGTGGATGATGATGAGGAT----..............................................................................................................................................................................................................................2512.00200200
.....................................................................................GAAC-----T----------------------GGATG-------------CCGATGGAGATGTGGA...............................................................................................................................................................................................................................................2612.00200200
.............................................................................................................................................GAGATGTGGATGATGATGAGGAT----GAA-----------GA..............................................................................................................................................................................................................2812.00200200
.................................................................................................................................................................................................ATTGA---TGGCGATCGGCAAAC..............................................................................................................................................................................2011.00100001
.........................................................................................................................................................ATGATGAGGAT----GAA-----------GATG-----ATATTG.................................................................................................................................................................................................2411.00100010
............................................................................................................................................................ATGAGGAT----GAA-----------GATG-----ATATTGA---TGGC.........................................................................................................................................................................................2611.00100100
.........................................................................................................................................GATGGAGATGTGGATGATGATGAGG....................................................................................................................................................................................................................................2511.00100100
........................................................................................................................TG-------------CCGATGGAGATGTGGAT..............................................................................................................................................................................................................................................1911.00100100
........................................................................................................................................................................GAA-----------GATG-----ATATTGA---TGGCGATCGGCAAAC..............................................................................................................................................................................2911.00100100
.................................................................................................................................................TGTGGATGATGATGAGGAT----GAA-----------GATG-----AT.....................................................................................................................................................................................................2811.00100100
....................................................................................................................................................................................................................AAACAG------------------------------------------------------------------AAGTGGAAGTA---TCC.........................................................................................2011.00100100
....................................................................................TGAAC-----T----------------------GGATG-------------CCGATGGAGATGTG.................................................................................................................................................................................................................................................2511.00100100
.................................................................................................................................................................................................ATTGA---TGGCGATCGGCAAACAG------------------------------------------------------------------AAGT......................................................................................................2611.00100100
..................................................................................GATGAAC-----T----------------------GGATG-------------CCGATGGAGATGT..................................................................................................................................................................................................................................................2611.00100100
...........................AAACG-----ACGA---TCAC---GATGAT.............................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................GATGA-CGATGCGGCGGCAGGA.......................................................................................................................................................................................................................................................................................................................2111.00100100
...............................................................CGATGCGGCGGCAGGACGTGAT.................................................................................................................................................................................................................................................................................................................2211.00100010
.................................................................................................................................................................................................................................................................................................GAAGTA---TCCATCACTAGTACAC------------C---------AGAT-------...........................................2711.00101000
.............................................................................................................................................................................................................GATCGGCAAACAG------------------------------------------------------------------AAGTGGAAGTA---TCCAT.......................................................................................2911.00100100
....................ATATAATAAACG-----ACGA---TCAC---GAT................................................................................................................................................................................................................................................................................................................................................2311.00100100
.................................................................................................................................................................................................................GGCAAACAG------------------------------------------------------------------AAGTGGAAGT................................................................................................1911.00100001
.......................................................................................................................................................................................................................CAG------------------------------------------------------------------AAGTGGAAGTA---TCCAT.......................................................................................1911.00100010
.....................................................................................GAAC-----T----------------------GGATG-------------CCGATGGAGATGTGGAT..............................................................................................................................................................................................................................................2711.00100100
.....................................................................................................................GGATG-------------CCGATGGAGATGTGGA...............................................................................................................................................................................................................................................2111.00100100
..................................................................................GATGAAC-----T----------------------GGATG-------------CCGATGGAGATGTG.................................................................................................................................................................................................................................................2711.00100100
......................................................................................................................GATG-------------CCGATGGAGATGTGGATGAT...........................................................................................................................................................................................................................................2411.00100100
........................................................................................................................................................................GAA-----------GATG-----ATATTGA---TGGCGATCGGC..................................................................................................................................................................................2511.00100100
..........................................................................................................................................ATGGAGATGTGGATGATGATGAGG....................................................................................................................................................................................................................................2411.00110000
........................................................................................C-----T----------------------GGATG-------------CCGATGGAGATGTGGATG.............................................................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................................................................AAACAG------------------------------------------------------------------AAGTGGAAGTA---TCCAT.......................................................................................2211.00100100
.........................................................................................................................................GATGGAGATGTGGATGATGA.........................................................................................................................................................................................................................................2011.00100100
....................................................................................................................................................................................................................AAACAG------------------------------------------------------------------AAGTGGAAGTA---TC..........................................................................................1911.00101000
.....................................................................................GAAC-----T----------------------GGATG-------------CCGATGGAGATGT..................................................................................................................................................................................................................................................2311.00100100
.............................................................................................................................................................................................................GATCGGCAAACAG------------------------------------------------------------------AAGTG.....................................................................................................1811.00101000
................................................................................................................................................................GGAT----GAA-----------GATG-----ATATTGA---TGGC.........................................................................................................................................................................................2211.00101000
....................................................................................................................................................GGATGATGATGAGGAT----GAA-----------GAT.............................................................................................................................................................................................................2211.00100100
.........................................................GATGA-CGATGCGGCGGCAGGAC......................................................................................................................................................................................................................................................................................................................2211.00100100
..............................................................................................T----------------------GGATG-------------CCGATGGAGATGTGGAT..............................................................................................................................................................................................................................................2311.00100100
.......................................GA---TCAC---GATGATGATGA-CGATGCGGC..............................................................................................................................................................................................................................................................................................................................2611.00100100
.........................................................................................................................................GATGGAGATGTGGATGAT...........................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................GATGATGATGAGGAT----GAA-----------GAT.............................................................................................................................................................................................................2150.60300300
...............................................................................................................................................GATGTGGATGATGATGAGGAT----..............................................................................................................................................................................................................................2120.50100100
...................................................GATGATGATGA-CGATGCGG...............................................................................................................................................................................................................................................................................................................................1960.33200020
...............................................................................................................................................GATGTGGATGATGATGAGGA...................................................................................................................................................................................................................................2030.33100100
...................................................GATGATGATGA-CGATGCGGC..............................................................................................................................................................................................................................................................................................................................2030.33100100
.....................................................TGATGATGA-CGATGCGGC..............................................................................................................................................................................................................................................................................................................................1840.25100010
......................................................................................................................................................ATGATGATGAGGAT----GAA-----------GAT.............................................................................................................................................................................................................2050.20100100
.......................................................................................................................................................TGATGATGAGGAT----GAA-----------GATG-----.......................................................................................................................................................................................................2050.20100100
...........................................................................................................................................................GATGAGGAT----GAA-----------GATG-----AT.....................................................................................................................................................................................................1860.17100100
.....................................................................................................................................................GATGATGATGAGGAT----GAA-----------................................................................................................................................................................................................................1890.11100010
droVir3
CGATGAAA---------CCGATTTTGTGGATCTAGATACGGGCGCCGCTGCCTTTATGCATAACG--GCGGCTGCCTGGCGTGAGATCGGGCTGC-----CC----A-------GCGTGCTG------------------------------C----------------------C------GATCACGAGCTGTTGC---TAGCCTACGAACAGCAG------------------------------------------------------------------CAGGAGCAGCA---G---------------------------C----------------------------------------------AG---------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................TTTTGTGGATCTAGATACGGGCGCC........................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CGAGCTGTTGC---TAGCCTACGA...................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TGC---TAGCCTACGAACAGCAG------------------------------------------------------------------CA........................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................ACGAGCTGTTGC---TAGCCTACGAACAGC..............................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................GTGCTG------------------------------C----------------------C------GATCACGAGCTGTT..................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
..ATGAAA---------CCGATTTTGTGGAT.......................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................GC-----CC----A-------GCGTGCTG------------------------------C----------------------C------GATCACGAGCTGT...................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................C----A-------GCGTGCTG------------------------------C----------------------C------GATCACGAGCT.....................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................CCTGGCGTGAGATCGGGCTGC-----C.................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GAACAGCAG------------------------------------------------------------------CAGGAGCAGC................................................................................................1990.111000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................ACAGCAG------------------------------------------------------------------CAGGAGCAGCA---G---------------------------C----------------------------------------------.................20190.112001000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................AGCAG------------------------------------------------------------------CAGGAGCAGCA---G---------------------------C----------------------------------------------A................19200.102000000000000000000001000000000000000000000000000000000000000010
..................................................................................................................................................................................................................AACAGCAG------------------------------------------------------------------CAGGAGCAGC................................................................................................18200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AACAGCAG------------------------------------------------------------------CAGGAGCAGCA---............................................................................................19200.102001000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AACAGCAG------------------------------------------------------------------CAGGAGCAGCA---G---------------------------C----------------------------------------------.................21170.061000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................AACAGCAG------------------------------------------------------------------CAGGAGCAGCA---G---------------------------................................................................20180.061000000000000000000000000000010000000000000000000000000000000000
droMoj3
GGACGATGAGG------CGGACTTTGTCGATCTAGATACGGGCTCCGCCAATTTTATGACCAATG--GCGGCTGCCTGGCGTGAGATCGGGCCC------------A-------ACGGGCTG------------------------------C----------------------C------GATCATGAGCTGTTGC---TGGCGTACGATCAGGAG--C----TGCAGCTGGATGAGCAA----CAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA--------------GCAGCAG---------------------------CAGC--------------------------------------GGGAGCA---------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................GTCGATCTAGATACGGGCTCCGC......................................................................................................................................................................................................................................................................................................................................................2311.001100000
........................................................................................................................................................................................................................................GGATGAGCAA----CAACAGCAGCAG....................................................................................................................................2211.001100000
.............................................................................................................................................................................................................GTACGATCAGGAG--C----TGCAGCTGGATGA........................................................................................................................................................2711.001100000
..........................................................................CCTGGCGTGAGATCGGGCC.........................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................ATGAGCAA----CAACAGCAGCAGCAGCAGCA............................................................................................................................2811.001000001
....................................................................................................................................................................................................GC---TGGCGTACGATCAGGAG--C----T....................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................GGCGTACGATCAGGAG--C----TGCAGCT..............................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCA--------------GCA...............................................................................................24200.153300000
..........................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCA......................................................................................................................22200.102020000
....................................................................................................................................................................................................................................................................................................GCAGCAG---------------------------CAGC--------------------------------------GGGAGCA---------------18170.061100000
.....................................................................................................................................................................................................................................................................................A--------------GCAGCAG---------------------------CAGC--------------------------------------GGGAGC................18190.051000100
................................................................................................................................................................................................................................................AA----CAACAGCAGCAGCAGCAGC.............................................................................................................................21200.051010000
............................................................................................................................................................................................................................................GAGCAA----CAACAGCAGCAG....................................................................................................................................18200.051100000
.............................................................................................................................................................................................................................................AGCAA----CAACAGCAGCAGCAGCAGCAGCA.........................................................................................................................28200.051000010
.............................................................................................................................................................................................................................................AGCAA----CAACAGCAGCAGCAGCAGC.............................................................................................................................24200.051100000
droGri2
GGACGATGATG------CCGATTTCGTGGATCTGGATACGGGTGCCGCAGCCTTTATGACTAATG--GCGGCTGCCTGGCGTGAGATCGGGCCC------------A-------ACGCGCTG------------------------------C----------------------C------GATCACGAACTGTTGC---TGGCATTCGATCAGCAC------------------------------------------------------------------CAGGAGCAGCA---GCAGAGCAGAACAC------AACAGCAGCA--------------------------------------------AGA---------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................CGGGCCC------------A-------ACGCGCTG------------------------------C----------------------C------GATC............................................................................................................................................................................................................2211.00110
.........................GTGGATCTGGATACGGGTGCC........................................................................................................................................................................................................................................................................................................................................................2111.00101

Generated: 05/18/2015 at 01:28 AM