ID:

dan_1390

 Coordinate:

scaffold_13117:4710855-4711005 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.1 -42.0 -42.0

Flybase annnotation

exon [dana_GLEANR_4071:4]; CDS [Dana\GF20822-cds]; intron [Dana\GF20822-in]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy-
R1_DYaLINER1+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGCCGGGGGCGACGGGGGGCGGCACGATGCTGGGGAATTTACCGTTGGGTAAGTAATATCGGTTCCGTTCCGTTCCGCATTATCCATCCAAGCGTGCGTTACTCCACACATACATACATATGTATGTGGTGTGGCATGCAGCAGATGCAGTAGAAGCAGCAGATGCAGCAGCAGCAGCAGCAACAGTAGTAGCAGCATCAAAAAAAAAAAAATATATGGAATGGCTTGCTCTGTCTCTGTCTCTGTCGA
**************************************************((((.......(((.......))).......))))..........((((((((((((((((.(((((((....)))))))))))))..(((.(((..(((.((....)).)))..))).)))((....)).........)))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V039
embryo
 V105
male body		 V106
head
..............................GCTGGGGAATTTACCGTTG.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0
...................GGCGGCACGATGCTGGGGAATT.................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................CAGTAGAAGCAGCAGATGC................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0
....CCGGTGGCGACGGGGGGCGGCAC................................................................................................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................AAAAGTAGTAGCAGCATCAAACAAA........................................... 25 2 1 1.00 1 1 0 0 0 0 0
.....CGGGGGCGACGGGGGGCGGC.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................TGGCGTGGGATGCAGCGGATG...................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
...........................................................ATCGGATCCGTTCCGTGCCTCA.......................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................ATAAGGAATGGATTGCTC.................. 18 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................AGAGTGGCATGCAGCAGATGGA.................................................................................................... 22 3 5 0.20 1 0 0 1 0 0 0
.................GGGGCGGCCCGATGGTAGGG...................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0
........................................................................................................................................................................................................................TAAGGAATGGATTGCTCT................. 18 2 7 0.14 1 1 0 0 0 0 0
............................................................................................................................................................................................TAGTAGCAGGTTGAAAAAAAA.......................................... 21 3 17 0.12 2 0 0 0 1 0 1
..............CGGCGGGCGGCACTATG............................................................................................................................................................................................................................ 17 2 9 0.11 1 0 0 1 0 0 0
...GCGCGGGGCGACGGCGGGCG.................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0
.............................................................................................................................................................GCAGCAGATGCAGCAGGCGCAGC....................................................................... 23 2 15 0.07 1 1 0 0 0 0 0
..............................................................................................................................................................................................GTAGCTGCACCACAAAAAAAAA....................................... 22 3 16 0.06 1 1 0 0 0 0 0
............................................................................................................................................................................................TATTAGGAGCACCAAAAAAAAA......................................... 22 3 17 0.06 1 1 0 0 0 0 0
.....GGGGGGCGACGGCGGGCGGCT................................................................................................................................................................................................................................. 21 3 18 0.06 1 0 0 1 0 0 0
.....................................................................................................................................................................TGCAGCAGCAGCAGCAGCA................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
.......GCGGCAACGGGGGGCGGC.................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0
................GTGGGAGGCACGATGGTGGG....................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CCACGGCCCCCGCTGCCCCCCGCCGTGCTACGACCCCTTAAATGGCAACCCATTCATTATAGCCAAGGCAAGGCAAGGCGTAATAGGTAGGTTCGCACGCAATGAGGTGTGTATGTATGTATACATACACCACACCGTACGTCGTCTACGTCATCTTCGTCGTCTACGTCGTCGTCGTCGTCGTTGTCATCATCGTCGTAGTTTTTTTTTTTTTATATACCTTACCGAACGAGACAGAGACAGAGACAGCT
**************************************************((((.......(((.......))).......))))..........((((((((((((((((.(((((((....)))))))))))))..(((.(((..(((.((....)).)))..))).)))((....)).........)))))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V105
male body		 M044
female body
 V039
embryo
.................................................................AGGCAAAGCAAGGTGTAATA...................................................................................................................................................................... 20 2 2 1.50 3 3 0 0 0
.................................................................AGGCAACACAAGGCGTAATA...................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................CTTACCGAACGAGTCAGA............. 18 1 1 1.00 1 1 0 0 0
.................................................................AGGCAAAGCAAGGCGTGATA...................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0
.................................................................AGGCAAGGCAAGGTTTAATA...................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0
...............................................................CAAGGCAAGGCTAGGCATAA........................................................................................................................................................................ 20 2 7 0.14 1 0 1 0 0
...........................................................................................................................................CTTGGTCTACCTCATCTTCGT........................................................................................... 21 3 7 0.14 1 1 0 0 0
......................................................................................................................................CCGTACGTCGTGCACGGCAT................................................................................................. 20 3 7 0.14 1 1 0 0 0
.............................................................................................................................................TCGTCTACAGCATGTTCGTC.......................................................................................... 20 3 8 0.13 1 1 0 0 0
.................................................................AGGCAAGGCACGTCGTATTA...................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0
...........................................................................................................................................TGTCGTCTACGTCAGGTTCGT........................................................................................... 21 3 10 0.10 1 1 0 0 0
.............................................................................................................................................TGGTCTACATCATATTCGT........................................................................................... 19 3 20 0.05 1 0 0 0 1
..................................................................AGCAAGGTAAGTCGTAATAG..................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0
.................................................................AGGGAACGCAAGTCGTAATA...................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13117:4710805-4711055 - dan_1390 GGTGCCG---------------------GGGGCGAC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------GTTCCG-----------------------------------TTCCGCATTATCCATCCAAGCGTGCGTTACTC-------------------------------------------------------------------------------------CACACATA-------------------------------------------------------------------------------------------------------------------CATAC-------------ATATGTATGTGG----------------TGTGGCATGCAGCAGATGCAGTAGAAGCAGCAG-------ATGCAGCAGCAGCAGCAGCAACA-GTAGTAGCAGCATCAAAAAAAAAAAAATA--TATGG--AA--TGGCTTGCTCTGTCTCTGTC------TCTGT----------CG--------------A
droBip1 scf7180000395814:18569-18775 - AGCGG------------------------GGGCGAC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------------------G----------------------------TTCCGCATTATCCATCCAAGCGTGCGTAACTCAC------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTGGCATGCAGCA------------GCAGCAG-------CAGCAGCAGCAGCAGCGGCAACA-GTAGTAGCAGCATCAAA-----------A-AAATGG--AA--TGGCTT--GCTCTCTCTGTCTCTGTCTCTGT----------CC--------------A
droKik1 scf7180000302696:927865-928036 - GGGGGCA---------------------ACGGCGCC----GGGGG--G---CGGAACGATGCTGGGGAATTTACCGTTGGGTAAGT-AAGATTG---GTTCC-----------------------------------GC-AGAAACCCAGAATCTCTCAGAATCAGTATCTCAGAATCCATCCAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCATGCAG---------------------CGAA------------------------------------------------------TGG-AATGG--AA--TGGCTT--TTAGTCTCTCGC------TCTCT-----CT---CT--------------C
droFic1 scf7180000453277:45768-46002 + GGCGG------------------------GGCCCGC----GGGGG--G---CGGTACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCGTCGCTTCC-----------------------------------AC-ACACACACACACACACACGCACACAACA----AAAATCCATCCAAGCGTGCGTAATTTTC------------------------------------------------------------------------------------------ACGTGCCTC------------------------------------------------------------------------------------------TTGTTTTT--TGAATGTC----G------------TGTTGTATGTTGTA-------CGTTGTATGTGGCATGCAGCA------------G------CGAT------------------------------------------------------T---GATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTCT--------CACAC-CT----CTGT--C
droEle1 scf7180000491023:590489-590694 - GGCGG------------------------GGGCGGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------------------ACCA-------------------------------AAAATCCATCCAAGCGTGCGTATTGCAC------------------------------------------------------------------------------------------ATGTGT----------------------------------------------------------------------------------------------TGTTGTT-TTGTATGCTGTAT--------------GCTGTGTGCTGTGTGCTCTATGTTGTATGTGGCATGCAGCAA-----------G------CGAA------------------------------------------------------TGG-AATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTAT----------CT--------------C
droRho1 scf7180000777256:80146-80318 - GGCGG------------------------GGGCAGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------------------AC-A-------------------------------AAAATCCATCCAAGCGTGCGTAATGCAC------------------------------------------------------------------------------------------ATGTGT---------TT--------------------------------------------------------------------------------------------TG------------------------------TGTTATA-------CGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGG-AATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTGT--------------------------C
droBia1 scf7180000298389:1380977-1381199 + GGCGG------------------------GCGCGGC----GGGGG--G---CGGACCGATGCTGGGGAATTTACCGTTGGGTAAGT-AATGTCC---GATCC-----------------------------------AC-A--------------------------TCCGC---ATCCATCCGCGCGTGTGTC---------TTGTCGTCGTAATCGCCACCACCATTG-----T-----------------------------------------------------------------------------------------------------------------------------------------------------ACCATTGTTGTTGTTGTTC-TTG---G------------CGTTGCATGTTGCA-------TGTTGTAGGTGGCATGCAGCA------------GCAGCGGCGAA------------------------------------------------------T---GAAGG--AA--TGGCTT---TTGTCTCTGTC------CCCC--------CG-CC--------------G
droTak1 scf7180000414375:293260-293451 - GGCGG------------------------GGGCGGC----GGGGG--G---CGGACCGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC-A-------------------------------TCCGTCCATCCAAGCGTGCATTATTCACGTGTTGTTATTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGT------TGTA---TGTAC-----------------GTATGTTGTA-------TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------C---GATGG--AA--TGGCTT--TTTGTCTCTCTG------ACT------------CT--------------G
droEug1 scf7180000409528:63494-63669 - GGCGG------------------------GTGCGAC----GGGGG--G---AGGAACGATGCTGGGGAATTTACCGTTGGGTAAGTTAATATCC---ATTCA-----------------------------------AA-AAAAAAA-------------------------AAGAACCATTCAAGCGTATATTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------TAT----TGA----TGTTGTATGTGGCATGCAGCA------------GC-G---CGAA------------------------------------------------------TA-TGATGG--AA--TGGCTT--TTTGTCTTTGTC------TTACC----A--CA-CA--------------C
dm3 chrX:11583527-11583762 + GTCGG------------------------GGGCGGC----GGGGG--GCGGTGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTATTATTATTATTATTA---TTATTA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------ATTATTGTTGTTGCTGTACGCTGTACG------------AGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTCTCTG----CG-CT--------------C
droSim2 x:10977321-10977550 + dsi_12560 GGTGC-------------------------AGCGGG----GGGCG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTATTATTATTATTATTA---TTA----TT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGTTGTTGCTGTACGTTGTACG------------AGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT---TTGTCTTTGTC------TCTCTGTGCGCT---CT--------------C
droSec2 scaffold_36:272186-272412 + GGTGC-------------------------AGCGGG----GGGCG--G---CGGCACGATGCTGGGGAATTTACCGATGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTATTATTATTATTATTA---TTTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGTTGTTGCTGTACGTTGTACG------------AGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT---TTGTCTTTGTC------TCTCT----------CT--------------G
droYak3 X:15102138-15102372 - GGCGG------------------------GGGCGGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------AGC---GTTCATCCAAGCGTGTATT------GTATTATTATTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGTTGTTGCTGTACGTTGTACGTTGTACGTTGTACGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTATCTTTGTC------TCTCT-----CT---CTCACTCTAACTGTCTG
droEre2 scaffold_4690:3603084-3603283 - GGCGG------------------------GGGCGGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AT------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGTTGCTGTACGTTGTAC--------------GATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTCT--------G-CG--------------C
dp5 XL_group1e:10128591-10128814 + dps_2780 GGTGGAG---------------------GCGGCGGC----GGC-G--GCGGGGGCAATTTGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GAACG-----------------------GATTGGATATCAAC-G-------------------------------GATATCTACCCAAAA---------------------------------------------------------------------------------------CGATCCT-ATATGTATATGTGTATATGTGTGTATGCGTG---------------------------------------------------------------------TGT-------------------------------------------GTG---TGTGTGT----GTGTTTGTGTGGCATGCAATA------------A------AAAA-------------------------A-A--------------------ACCTAATGG-AATGGAGAA--TGGCTT--GCTGTCTATCTA------TCTC--------TA-TC--------------A
droPer2 scaffold_22:101110-101325 - GGCGG------------------------CGGCGGC----GGCGG--G----GGCAATATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GAACG-----------------------GATTGGATATCAAC-G-------------------------------GATATCTACCCATACG----------------------------------------------------------------------------------------ATCCCGATATGTATATGTGTATATGCGTGTTTGTGTG---------------------------------------------------------------------TAT-------------------------------------------GCG---TGTGTGT----GTGTGTGTGTGGCATGCAATA------------A------AAAA------------------------------------------------ACCTAATGG-AATGGAGAA--TGGCTT--GCTGTCTATCTA------TCTC--------TA-TC--------------A
droWil2 scf2_1100000004515:3177886-3178130 + GTCGT------------------------CGGTGGC----AACTA--------GCAATATGTTGGGAAATTTACCATTAGGTAAGT-A-TTTCA---ATACC-----------------------------------AA------------------------------ATA---C----TACAAACTTATATA------CTATATATAT--A---------------------TATCTATATAACCCAACAAACAAATCGGGGAAAGCCCAAGTCC------------------------------------------------------------------------------------------------CCCGATTAATA----------------T---------------------------AAA---ACAAACT----ATTTATTTGTGGCATGAA-CA------------A------TGAAAAAA------------------AAAAGAT-ATAGTAA-ATCAAAAAAAA-----GA-AAATGG--AATGTGGCTT--GCTCTC--------------TCT-TG----CC-TG--------------A
droVir3 scaffold_12875:1997782-1997967 - GCAGTTCCATCAA---------------AAGGCACCGGGCGGCGGGCC---CGGCATGAATGTGCAGCAAAACTTTTTGGATATCA-AACAGGA---GC-------------------------------------------------------------------------------TC---------------------------------------------------------TTCTATTCCTCACCAAACGATTT----CGATCTCAAGCGT------------------------------------------------------------------------------------------------CTGCAGCAGCA----------------GCA---------------------------------------------------GGCCATGCAGCA------------GCAGCAG-------CAGCAGCAGCAACAGCAGCAAC-----------------------------AGCAGCAG----------------------------------CAA--------CA-TC--------------A
droMoj3 scaffold_6473:2071546-2071742 + TCCGCCGGCTCTCAGGTGGTGGGTGGTGGCGGCAAC----GGT--------------------GGCGTTGGCAGCGTGGGGCAAAG---CAGCG---GCAGTGGTCAGGGTCGATATCCGGCGCCCATTCA--GCGGCC-A-------------------------------AACAACTATCCACAG---------------------------------------------------------------------------------------CAT------------------------------------------------------------------------------------------------CCGCAGCAGCA----------------GCA---------------------------------------------------GCAGCAGCAGCA------------ACAGCAG-------------------------CAACA-ACATCATCAGCAACAACAAC-------A---GC----------------------------A------GCAG--------CA-GC--------------A
droGri2 scaffold_15110:12040213-12040468 - CATTC-------------------------CTCACCGGACAGCGG--A---CGGAGCAGCGGCTGCTCATCCAGCTCCAGTTCGGC-AACAGT----------------------------------------------------------------------------------------------------C---------TCATCCTCATCATCA---------TCATCGTCGT-----------------------------------------------------CCGCAT---------CC------AGCGCTGAGCATTTCAATCGAGCGACGCTACTCAATGCCGGCGCCAATCAGCTCCAGCTACAACAGCAGCA----------------GCA---------------------------------------------------GC---AACAACA------------ACAACAG-------CAGCAACAG---------CAACA-GCAGCAGCAGCAGCAGCAACA------TCAACATAC--AA--CAC-CC--TCAGTCTCTGTC------GCAG-----------CC--------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGTGCCG---------------------GGGGCGAC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------GTTCCG-----------------------------------TTCCGCATTATCCATCCAAGCGTGCGTTACTC-------------------------------------------------------------------------------------CACACATA-------------------------------------------------------------------------------------------------------------------CATAC-------------ATATGTATGTGG----------------TGTGGCATGCAGCAGATGCAGTAGAAGCAGCAG-------ATGCAGCAGCAGCAGCAGCAACA-GTAGTAGCAGCATCAAAAAAAAAAAAATA--TATGG--AA--TGGCTTGCTCTGTCTCTGTC------TCTGT----------CG--------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................GCTGGGGAATTTACCGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................G--G---CGGCACGATGCTGGGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGAAGCAGCAG-------ATGC........................................................................................................................1911.001001000
.....CG---------------------GGGGCGAC----GGGGG--G---CGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAGCAGCAGCA........................................................................................................19200.051100000
droBip1
AGCGG------------------------GGGCGAC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------------------G----------------------------TTCCGCATTATCCATCCAAGCGTGCGTAACTCAC------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTGGCATGCAGCA------------GCAGCAG-------CAGCAGCAGCAGCAGCGGCAACA-GTAGTAGCAGCATCAAA-----------A-AAATGG--AA--TGGCTT--GCTCTCTCTGTCTCTGTCTCTGT----------CC--------------ASizeHit CountTotal NormTotal
No Reads
droKik1
GGGGGCA---------------------ACGGCGCC----GGGGG--G---CGGAACGATGCTGGGGAATTTACCGTTGGGTAAGT-AAGATTG---GTTCC-----------------------------------GC-AGAAACCCAGAATCTCTCAGAATCAGTATCTCAGAATCCATCCAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCATGCAG---------------------CGAA------------------------------------------------------TGG-AATGG--AA--TGGCTT--TTAGTCTCTCGC------TCTCT-----CT---CT--------------CSizeHit CountTotal NormTotal
No Reads
droFic1
GGCGG------------------------GGCCCGC----GGGGG--G---CGGTACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCGTCGCTTCC-----------------------------------AC-ACACACACACACACACACGCACACAACA----AAAATCCATCCAAGCGTGCGTAATTTTC------------------------------------------------------------------------------------------ACGTGCCTC------------------------------------------------------------------------------------------TTGTTTTT--TGAATGTC----G------------TGTTGTATGTTGTA-------CGTTGTATGTGGCATGCAGCA------------G------CGAT------------------------------------------------------T---GATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTCT--------CACAC-CT----CTGT--CSizeHit CountTotal NormTotal
No Reads
droEle1
GGCGG------------------------GGGCGGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------------------ACCA-------------------------------AAAATCCATCCAAGCGTGCGTATTGCAC------------------------------------------------------------------------------------------ATGTGT----------------------------------------------------------------------------------------------TGTTGTT-TTGTATGCTGTAT--------------GCTGTGTGCTGTGTGCTCTATGTTGTATGTGGCATGCAGCAA-----------G------CGAA------------------------------------------------------TGG-AATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTAT----------CT--------------CSizeHit CountTotal NormTotal
No Reads
droRho1
GGCGG------------------------GGGCAGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GTTCC-----------------------------------AC-A-------------------------------AAAATCCATCCAAGCGTGCGTAATGCAC------------------------------------------------------------------------------------------ATGTGT---------TT--------------------------------------------------------------------------------------------TG------------------------------TGTTATA-------CGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGG-AATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTGT--------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
GGCGG------------------------GCGCGGC----GGGGG--G---CGGACCGATGCTGGGGAATTTACCGTTGGGTAAGT-AATGTCC---GATCC-----------------------------------AC-A--------------------------TCCGC---ATCCATCCGCGCGTGTGTC---------TTGTCGTCGTAATCGCCACCACCATTG-----T-----------------------------------------------------------------------------------------------------------------------------------------------------ACCATTGTTGTTGTTGTTC-TTG---G------------CGTTGCATGTTGCA-------TGTTGTAGGTGGCATGCAGCA------------GCAGCGGCGAA------------------------------------------------------T---GAAGG--AA--TGGCTT---TTGTCTCTGTC------CCCC--------CG-CC--------------GSizeHit CountTotal NormTotal
No Reads
droTak1
GGCGG------------------------GGGCGGC----GGGGG--G---CGGACCGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC-A-------------------------------TCCGTCCATCCAAGCGTGCATTATTCACGTGTTGTTATTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGT------TGTA---TGTAC-----------------GTATGTTGTA-------TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------C---GATGG--AA--TGGCTT--TTTGTCTCTCTG------ACT------------CT--------------GSizeHit CountTotal NormTotal
No Reads
droEug1
GGCGG------------------------GTGCGAC----GGGGG--G---AGGAACGATGCTGGGGAATTTACCGTTGGGTAAGTTAATATCC---ATTCA-----------------------------------AA-AAAAAAA-------------------------AAGAACCATTCAAGCGTATATTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------------------------TAT----TGA----TGTTGTATGTGGCATGCAGCA------------GC-G---CGAA------------------------------------------------------TA-TGATGG--AA--TGGCTT--TTTGTCTTTGTC------TTACC----A--CA-CA--------------CSizeHit CountTotal NormTotal
No Reads
dm3
GTCGG------------------------GGGCGGC----GGGGG--GCGGTGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTATTATTATTATTATTA---TTATTA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------ATTATTGTTGTTGCTGTACGCTGTACG------------AGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTCTCTG----CG-CT--------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................GGGG--GCGGTGGCACGATGCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GATGCTGGGGAATTTACCGTTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000001000
...........................................................TGCTGGGGAATTTACCGTTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--..............................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................ACGATGCTGGGGAATTTACCGTTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000
.........................................................GATGCTGGGGAATTTACCGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000000000000000000000
..............................................................TGGGGAATTTACCGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000
.............................................................CTGGGGAATTTACCGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................ACGATGCTGGGGAATTTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGG------------------------GGGCGGC----GGGGG--GCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTGGCACGATGCTGGGGAATTTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGC......................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGGCATGCAGCA------------G------CG.................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GGCACGATGCTGGGGAATTTACCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
....................................................................................................................................................................................................................................TATTA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------ATTATTGTTGTTGC.........................................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA------------------------------------------------------TGATGATGG--AA--TGGC......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TACG------------AGATGTATGTTGTGTGT----...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................GGGGG--GCGGTGGCACGATGCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTGTCTTTGTC------TCTCTCTG----CG-CT--------------C2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................GGTGGCACGATGCTGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTACGCTGTACG------------AGATGTATG.......................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTTTGTC------TCTCTCTG----CG-CT--------------C2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................GTACGCTGTACG------------AGATGT..........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
....................................................GGCACGATGCTGGGGAATTTACCGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--..............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTACG------------AGATGTATGTTGTGT.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGG--AA--TGGCTT--TTTGTCTTT.........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....G------------------------GGGCGGC----GGGGG--GCGGTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTGT----TGTTGTATGTGG...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------TGATGATGG--AA--TGGCTT--TT................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTACG------------AGATGTATGTTGTGTGT----TGTT.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTTTGTC------TCTCTCTG----CG-C................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGGCACGATGCTGGGGAATTTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GCTGGGGAATTTACCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....G------------------------GGGCGGC----GGGGG--GCGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CACGATGCTGGGGAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATGTTGTGTGT----TGTTGTATG..................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................GCTGGGGAATTTACCGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................CTGGGGAATTTACCGTTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATGTTGTGTGT----TGTT.......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATCCAAGCGTGCATT------GTATTATTAT......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGTGT----TGTTGTATGTG................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................GCTGGGGAATTTACCGTTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATGTGGCATGCAGCA------------G------C..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................GGTGGCACGATGCTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................GTGGCACGATGCTGGGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................GTGGCACGATGCTGGGGAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGG------------------------GGGCGGC----GGGGG--GCGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TGCTGGGGAATTTACCGTTGGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..CGG------------------------GGGCGGC----GGGGG--GCGGTGGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TGGCACGATGCTGGGGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CGGTGGCACGATGCTGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATGTTGTGTGT----TGTTG......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................................................ATGCTGGGGAATTTACCGTTGGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GTTGGGTAAGT-AATATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGGGGAATTTACCGTTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................CGTTGGGTAAGT-AATATCT---G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------G------CGAA------------------------------------------------------TGATGATGG--A.............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................ACGATGCTGGGGAATTTACCGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................T-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATGCTGGGGAATTTACCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................G--GCGGTGGCACGATGCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................GATGCTGGGGAATTTACCGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GG------------------------GGGCGGC----GGGGG--GCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTGT.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTG..............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................ATGCTGGGGAATTTACCGTTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...GG------------------------GGGCGGC----GGGGG--GCGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...............................................GCGGTGGCACGATGCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTGT----TGTTGTATGTGGC..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGC......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................TGGGGAATTTACCGTTGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................GCGGTGGCACGATGCTGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTTTGTC------TCTCTCCT----....................2090.8980000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000101020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TA---TTATTA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------ATTATTGTTGT............................................................................................................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTTTGTC------TCTCTCG.........................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGTGC-------------------------AGCGGG----GGGCG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTATTATTATTATTATTA---TTA----TT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGTTGTTGCTGTACGTTGTACG------------AGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT---TTGTCTTTGTC------TCTCTGTGCGCT---CT--------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGTC------TCTCTGTGCGCT---.................2111.00100100000000000000
...............................................................................................................................................................................................................................A---TTA----TT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGTTGTTGCT........................................................................................................................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTTTGTC------TCTCTGTGCG......................2111.00100000000001000000
..................................................................GAATTTACCGTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.33100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTGCTGTACG...................................................................................................................................................................................................................1540.25100000000001000000
droSec2
GGTGC-------------------------AGCGGG----GGGCG--G---CGGCACGATGCTGGGGAATTTACCGATGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTATTATTATTATTATTA---TTTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGTTGTTGCTGTACGTTGTACG------------AGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT---TTGTCTTTGTC------TCTCT----------CT--------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................CG--G---CGGCACGATGCTGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.....................................................GCACGATGCTGGGGAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..........................................................ATGCTGGGGAATTTACCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.........................................................GATGCTGGGGAATTTACCGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
GGCGG------------------------GGGCGGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AC------------------------------AGC---GTTCATCCAAGCGTGTATT------GTATTATTATTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGTTGTTGCTGTACGTTGTACGTTGTACGTTGTACGATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTATCTTTGTC------TCTCT-----CT---CTCACTCTAACTGTCTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................CGATGCTGGGGAATTTACCGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGTACGTTGTACGTT..........................................................................................................................................................................................................2111.00100000010000
.............................................................CTGGGGAATTTACCGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
droEre2
GGCGG------------------------GGGCGGC----GGGGG--G---CGGCACGATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCT---GTTCC-----------------------------------AT------------------------------CGA---GTCCATCCAAGCGTGCATT------GTATTATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGTTGCTGTACGTTGTAC--------------GATGTATGTTGTGTGT----TGTTGTATGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGATGATGG--AA--TGGCTT--TTTGTCTTTGTC------TCTCT--------G-CG--------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................TGGGGAATTTACCGTTGGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
....................................................................................GT-AATATCT---GTTCC-----------------------------------AT------------------------------CGA---GTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTT--TTTGTCTTTGTC------TCTCT--------G-CG--------------C2511.0010000010
.........................................................GATGCTGGGGAATTTACCGTTGGGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
......................................................CACGATGCTGGGGAATTTACCGTTGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
........................................GGGGG--G---CGGCACGATGCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCATGCAGCA------------G------CGAA------------------------------------------------------TGAT.....................................................................2311.0011000000
.........................................................GATGCTGGGGAATTTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
...............................GCGGC----GGGGG--G---CGGCACGATGCTGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
.......................................................ACGATGCTGGGGAATTTACCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
dp5
GGTGGAG---------------------GCGGCGGC----GGC-G--GCGGGGGCAATTTGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GAACG-----------------------GATTGGATATCAAC-G-------------------------------GATATCTACCCAAAA---------------------------------------------------------------------------------------CGATCCT-ATATGTATATGTGTATATGTGTGTATGCGTG---------------------------------------------------------------------TGT-------------------------------------------GTG---TGTGTGT----GTGTTTGTGTGGCATGCAATA------------A------AAAA-------------------------A-A--------------------ACCTAATGG-AATGGAGAA--TGGCTT--GCTGTCTATCTA------TCTC--------TA-TC--------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGG-AATGGAGAA--TGGCT.....................................................2011.0010000000001
...............................................................GGGGAATTTACCGTTGGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
...GGAG---------------------GCGGCGGC----GGC-G--GCGGGGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010000010000
GGTGGAG---------------------GCGGCGGC----GGC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110100000000
...............................................................................................................................................................................................................................................................................................................TGTATGCGTG---------------------------------------------------------------------TGT-------------------------------------------GTG---TGTGT.................................................................................................................................................................................21200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TG---TGTGTGT----GTGTTTGTGTG................................................................................................................................................................20200.0510000010000
...............................GCGGC----GGC-G--GCGGGGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
........................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------TGT-------------------------------------------GTG---TGTGTGT----GTGTTTGTG..................................................................................................................................................................23200.0510000010000
droPer2
GGCGG------------------------CGGCGGC----GGCGG--G----GGCAATATGCTGGGGAATTTACCGTTGGGTAAGT-AATATCG---GAACG-----------------------GATTGGATATCAAC-G-------------------------------GATATCTACCCATACG----------------------------------------------------------------------------------------ATCCCGATATGTATATGTGTATATGCGTGTTTGTGTG---------------------------------------------------------------------TAT-------------------------------------------GCG---TGTGTGT----GTGTGTGTGTGGCATGCAATA------------A------AAAA------------------------------------------------ACCTAATGG-AATGGAGAA--TGGCTT--GCTGTCTATCTA------TCTC--------TA-TC--------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................GCAATATGCTGGGGAATTTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................CAATATGCTGGGGAATTTACCGTTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AATGGAGAA--TGGCTT--GCTGTC............................................2211.001001000
droWil2
GTCGT------------------------CGGTGGC----AACTA--------GCAATATGTTGGGAAATTTACCATTAGGTAAGT-A-TTTCA---ATACC-----------------------------------AA------------------------------ATA---C----TACAAACTTATATA------CTATATATAT--A---------------------TATCTATATAACCCAACAAACAAATCGGGGAAAGCCCAAGTCC------------------------------------------------------------------------------------------------CCCGATTAATA----------------T---------------------------AAA---ACAAACT----ATTTATTTGTGGCATGAA-CA------------A------TGAAAAAA------------------AAAAGAT-ATAGTAA-ATCAAAAAAAA-----GA-AAATGG--AATGTGGCTT--GCTCTC--------------TCT-TG----CC-TG--------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
GTCGT------------------------CGGTGGC----AACTA--------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200110
..CGT------------------------CGGTGGC----AACTA--------GCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----GA-AAATGG--AATGTGGCTT--GC................................................2311.00100010
GTCGT------------------------CGGTGGC----AACTA--------GCAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
droVir3
GCAGTTCCATCAA---------------AAGGCACCGGGCGGCGGGCC---CGGCATGAATGTGCAGCAAAACTTTTTGGATATCA-AACAGGA---GC-------------------------------------------------------------------------------TC---------------------------------------------------------TTCTATTCCTCACCAAACGATTT----CGATCTCAAGCGT------------------------------------------------------------------------------------------------CTGCAGCAGCA----------------GCA---------------------------------------------------GGCCATGCAGCA------------GCAGCAG-------CAGCAGCAGCAACAGCAGCAAC-----------------------------AGCAGCAG----------------------------------CAA--------CA-TC--------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----------------GCA---------------------------------------------------GGCCATGCAGC.......................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................ATGAATGTGCAGCAAAACTTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATGCAGCA------------GCAGCAG-------CA..........................................................................................................................2120.501001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------------------AGCAGCAG----------------------------------CAA--------CA-.................19200.051000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAGCAGCA........................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CAGCAGCAGCAACAGCAGCA........................................................................................................21200.051000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-------CAGCAGCAGCAACAGCA...........................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------CAGCAGCAGCAACAGCAGC.........................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAAC-----------------------------AGCAGC...................................................................19200.051000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAAC-----------------------------.........................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA------------GCAGCAG-------CAGCAGCA....................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAAC-----------------------------AGCAGCAG----------------------------------CAA--------C...................23200.051000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAAC-----------------------------AGCA.....................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAC-----------------------------AGCAGCAG----------------------------------CAA--------CA-.................23200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
TCCGCCGGCTCTCAGGTGGTGGGTGGTGGCGGCAAC----GGT--------------------GGCGTTGGCAGCGTGGGGCAAAG---CAGCG---GCAGTGGTCAGGGTCGATATCCGGCGCCCATTCA--GCGGCC-A-------------------------------AACAACTATCCACAG---------------------------------------------------------------------------------------CAT------------------------------------------------------------------------------------------------CCGCAGCAGCA----------------GCA---------------------------------------------------GCAGCAGCAGCA------------ACAGCAG-------------------------CAACA-ACATCATCAGCAACAACAAC-------A---GC----------------------------A------GCAG--------CA-GC--------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................TGGGGCAAAG---CAGCG---GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................AC----GGT--------------------GGCGTTGGCAGCGTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................ACTATCCACAG---------------------------------------------------------------------------------------CAT------------------------------------------------------------------------------------------------CCGCAGCAGC.........................................................................................................................................................................................................................................2411.001000010
.................................................................................................................ATATCCGGCGCCCATTCA--GCGGCC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................GTTGGCAGCGTGGGGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................................................................................GCAAAG---CAGCG---GCAGTGGTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....CGGCTCTCAGGTGGTGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------------------CAACA-ACATCATCAGCA........................................................................................1950.201100000
...................................................................................................................................................................................................................................................................................AT------------------------------------------------------------------------------------------------CCGCAGCAGCA----------------GCA---------------------------------------------------GCAGCAGCAGCA------------..........................................................................................................................................2860.171100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC-------A---GC----------------------------A------GCAG--------C...................19200.102000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------A---GC----------------------------A------GCAG--------CA-GC--------------.19200.102000020
............................................................................................................................................................................................................................................................................................................................................................................................AGCA----------------GCA---------------------------------------------------GCAGCAGCAGCA------------..........................................................................................................................................19200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAAC-------A---GC----------------------------A------GCAG--------C...................20200.051100000
droGri2
CATTC-------------------------CTCACCGGACAGCGG--A---CGGAGCAGCGGCTGCTCATCCAGCTCCAGTTCGGC-AACAGT----------------------------------------------------------------------------------------------------C---------TCATCCTCATCATCA---------TCATCGTCGT-----------------------------------------------------CCGCAT---------CC------AGCGCTGAGCATTTCAATCGAGCGACGCTACTCAATGCCGGCGCCAATCAGCTCCAGCTACAACAGCAGCA----------------GCA---------------------------------------------------GC---AACAACA------------ACAACAG-------CAGCAACAG---------CAACA-GCAGCAGCAGCAGCAGCAACA------TCAACATAC--AA--CAC-CC--TCAGTCTCTGTC------GCAG-----------CC--------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................CGTCGT-----------------------------------------------------CCGCAT---------CC------AGCGCTG........................................................................................................................................................................................................................................................................................................2111.00101
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA------TCAACA...................................................................24200.05110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG-------CAGCAACAG---------CAAC......................................................................................................20200.05110

Generated: 05/18/2015 at 01:28 AM