ID:

dan_1351

 Coordinate:

scaffold_13117:3549508-3549658 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF20893-cds]; exon [dana_GLEANR_4136:1]; intron [Dana\GF20893-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCGCGTATCAGCAACGTTTGCCATCAGGTGCACCATCGATTCACAGGTGAGTTTTGCTTTTTAAATATTTTCTAAAAATAAGGGGGGAATCTATAAAAACAAAAATAAATAAAATAATCTGTTATTTTACAAAAATTCTCATAATTATTAAAAACAAAAACTGGTCTAGGATTAAAAAAAAACTAGGACTTTAAATCTCTTTATCTCTTGTAATTTTAAACTTTCTCGAGCAATAAGAAATAAAAATAAAA
**************************************************.(((((.((((((...(((((((..........)))))))...))))))))))).....((((((((....)))))))).................................(((((((.............))).))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V055
head
...............GTTTGCCATCAGGTGCACCATC...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0
......................ATCAGGTGCACCATCGATT.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0
.......................................................................................................................................................................................TAGGAGTTCGAATCTCTTTATC.............................................. 22 3 1 1.00 1 1 0 0
.............................................................................................................................................AAATTATGAAAAACAAAAACAGGT...................................................................................... 24 3 3 0.33 1 1 0 0
............................................................................................ATAAAAGCAAAAAGAAATAAAAGAAT..................................................................................................................................... 26 3 4 0.25 1 0 0 1
....................................................................................................................................................................TCTAGGATGAAAAAAAAA..................................................................... 18 1 4 0.25 1 1 0 0
..............CGTTTCCCAGCAGATGCACCA........................................................................................................................................................................................................................ 21 3 4 0.25 1 0 1 0
.........................................................................AAATATAAGCGGGGGATCTAT............................................................................................................................................................. 21 3 6 0.17 1 0 0 1

Anti-sense strand reads

GGCGCATAGTCGTTGCAAACGGTAGTCCACGTGGTAGCTAAGTGTCCACTCAAAACGAAAAATTTATAAAAGATTTTTATTCCCCCCTTAGATATTTTTGTTTTTATTTATTTTATTAGACAATAAAATGTTTTTAAGAGTATTAATAATTTTTGTTTTTGACCAGATCCTAATTTTTTTTTGATCCTGAAATTTAGAGAAATAGAGAACATTAAAATTTGAAAGAGCTCGTTATTCTTTATTTTTATTTT
**************************************************.(((((.((((((...(((((((..........)))))))...))))))))))).....((((((((....)))))))).................................(((((((.............))).))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V105
male body		 V039
embryo
 V055
head
.................................GTAGCAAAGTGACGACTCAA...................................................................................................................................................................................................... 20 3 9 0.44 4 4 0 0 0
.............TGCAAACGTTAGCACACGTG.......................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0
............................................................................................TATTTTTGTTTTTATTTAGT........................................................................................................................................... 20 1 15 0.07 1 0 0 1 0
....CATAGTCGTTGCTGACGAT.................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13117:3549458-3549708 - dan_1351 CCGCGTA-TCA---G--CAAC----GTTTGC-C----ATCAGGTGCACC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATTCACAGGTGAGTTT--------------------------------------------------------------------------------------------------------T------------GCTTTTTAA------------------ATATTT----TCTAAAAA-TAAGGGGGGAATCT-ATAAAAA--------------------------------------------CAAAAATAAATAAAATAATCTGTTATTTTACAAAAATTCTCATAATTATTAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA---AACTGGTCTAGGATTAAAAA------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------AACTA------------------------------------------------------------------------------------------------------------------------------GGACTTTAAATCTCTTTATC-----TCT-TGTAATTTTAAACTTTCTCGAGC-------------------------------------------A--ATAAG----AAATAAAA-----A----------TAAAA
droBip1 scf7180000395895:8717-8909 + CCGCGTA-TCA---G--CAAC----GTTTGC-C----ATCAGGTGCACC------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATTCACAGGTGAGATATTT------------------------------------------------------------------------------------------------------------------------------------------TAACTACTTTATA----AAATAAAATTAAAAAAATA-AAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAATTAAAAAAAAAACTCAAGCCAAGTC---------------------------------------------------------------------------------------------------------------------------GAACTCTAGACTCGAACT---------------------------------------------------------------------------------------------------------------TGAAGAACTAAG----------------------------------------------------------------CC---TCTGGA------------------------------------------------------------------------------------------------------GTA--------------GGTTTAAGGAGTCAGG---------------------------AA-----C----------TTGAT
droKik1 scf7180000302685:114061-114325 + TCAACAA-C-A---G--CAACAGC----A-AC-T----------AC-------------------------------------------------------------------------------------TACTACAGAACAATAATAACAACAATCTCGAGGATGAAGTTTATTATTTGTTTTATAAAGATTTTT------------------A----------------------------------------------------------------------------------------------------------------------------------------------TGTAAGTTTCAACAA---------------------------TTTCAACAAGTATT--------------------------------------------ATGG--TA-TATTATCTA-AA--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATTCAACAAAAACTGAAAAACAAATT--------------------------------------------------------------------------CAAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAACAAGCAGTTAAA-----------AAAATAATA-------AATGTTT-GCC----TA----TTT-TAT-AATTATTTTAAAT---------AT--ATATACAGG-------------------------------G--ATAAT--------TTCTAAAACA----------TAGCC
droFic1 scf7180000453773:333331-333565 + ACAAATC-ATG---CAAGGTG----CTTGAT------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATATTAGTTATTAAGGATTTTTAATA------CGAAGACGGAAGCTTTTAA---------------------------------------------------------------------AAA---------------------------TTTATATAAAAATA--------------------------------------------ATTT--TA-TAATATATA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCCAAATGATTAATAATGGAGAGGATATGATTAAGGCAAACACCTCACAGAAGAACTTAATCTATTAGAAATTTATGGTAAACTTAATTTCAATTATTGATCATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAAA-----ATAATA-----TGAAA
droEle1 scf7180000491338:141779-142049 - CCGATAA-GCA---C-----A----GCAAAC-A----GGAAAACACGTT----------AATGGAA------------------------ATGTTGTATAAAACGTATAAATAATTTATATACTGCTTCGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACGGCAACCAACAACACACACGCAAACAAATAAATGATATATTTAA--------------ATATTTA-AAACAAACCACACAAGATGAA-CAACAACAACAAAAAA------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGTG------------------------------------------------TCTTAAAACGTAGTATTAGAAGTTTATTATTAATTTGTTTGTACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGT-AAAAT---------AT--T---------------------------TA------TAGAAAAAGAAA----AAATACAA-----A----------GATTT
droRho1 scf7180000780293:227311-227527 + ATGCTCC-TCA---G--CAACAAC----A-AA-T----------GC-------------------------------------------------------------------------------------CAACAAGTGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------CAAACTA--------------------------------------------------------------------------------------------------------T------------GCTTCCCAA------------------G-----------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGGAGAGAGTAAATTTAAATGTTCACTTGAAGTAAATAAATGGGATAA-AATCAGTA---------------------------------------------------------------------------------------------------------------------------------------AATATAAATACTTATCATATTAAACT--------------------------------------AAAATTAAG---------------------------------------------------------GAG-TTATGTTAACT---------------------------------------------------A--------AATG-------------------------------------------------------------------------------------------------------------------CC---TTTTAAATAGCTTAAACTAT----------------------------------------------------------------------------------C-----------------------------------AG----------T--T-GAT----AAAGAAAA-----A----------TATGA
droBia1 scf7180000302041:556487-556740 + CCTCGTA-TCA---G--CAACAGC----A-AT-A----------GCAAC-------ACT------------------------------------------------------------------------GA------------------------------GACAAAGTAAGCGGCGTGTTTTCCCTTGCAGCTAAAACGAAAACCGACTTTTCCACCAAATGAAAAAAACTAAATACGTTCTTTGGTAAATTTGATATGATTAAATTTTAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA---AATTGAGGCAACATT------------------------------------TTTAAA-------TAAATATTATGGCT-ACATTTTATAA---------------------------------------------------AGTAACCTTAAGATTGGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAACTAATTAAAAAC-----G--AGGCA----TTTTTAAA-----A----------CAAAA
droTak1 scf7180000415765:360336-360581 + GCAAGCA-GTT---------------TATGT-C----ATCCCATGGAGG------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATTTGAGAA----------------------------------------------------------------------------------------------------------------TGACTACAGCAAGGAT------------------TGTAAGTATTTAAGA----AAACAGAATAGGGAAATAT-GTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGATAAGATAAAGACAGAG--------------------------------------AAATTTAGTGGGATTTGGAGATCATTATAAAATAGGCAATATAAAGT---T-----------AAGACATAGGATTAAG-----------AAAGTGATA-------AATATTA-GGTTTTATAGATTATAA-AAAA----------GT---------------------------------------TTTACA-AAA---AT--TTAGT-------GGGTA-----A----------AAATA
droEug1 scf7180000407253:313317-313538 - CCATTCT-ATAACGGTAAGT------------------------GCTCTTGCCCTT-T-CAGCAGAT-CTGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTTTTGGCC--TTTGACTAGGCTGACCGAAATCAGCTAAAAAAGCTTAAATAAATGTTTAAAAAATGTTTATTTTAAGGATTAACAT---------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CAATAACTATGAAATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA----AAAAA-----------------------------------------------------------------------------------------------------ATAGACTTTGATATTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAAATTATTTATG-AT-----A--T-GAG----CTTTAAAA-----A----------TTAAA
dm3 chr3R:3686674-3686939 - CCCCAAA-ACC---CAACCCG----GCCTGC-C----ACCATCAACATC---------------------------A-----------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGCTCACGGT------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------GCTGAAAG-TGAGTAAAGTTTCA-CCGAAAA---------------------------------------------------------------------------------------------------------------------------CTTGAACCAATCAAAAACCAAACTCTT------CAATA------------------------------------------------------------------------AAC--------------------------------------------CCAAGC------------------------TAAACCAAAATTAAAGCCCATTTAAAAAGTAA---AATACACG-------------------------------------------------GAAAATG------------------------------------------------CTGTAAAATGACATCTGATGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGTTTGTGTTGCAACT-----TTT-GTAAAGC----------------------------------------------CCTAA---A---CT--T---A----AAACAAAA-----A----------AAAAA
droSim2 x:4314982-4315214 + ATGTGTCATTC---A--TAAT----G----C-AAGCAATCAAA----TT-------------------------------------------------------------------------------------------------------------------GTTCAGTTAAATGCGTGTTTTCTATCGAATTTAAATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------AAGACT----TCTAAATA-TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGGTATGAAAAAAAAGCAAATGATATTTTTCAAATATTTTATAAACAATAATTTTCTACAACAAAT--------------------------------------------GCAGTCTAATAATGTACATGTTTTTCACCTTAAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTCAACTTTCCCACCC-----TTT-ATTAATT--------------------------------------------------------------------------------------------------TT
droSec2 scaffold_95:108554-108739 - ATTTTCC-AAA---A--A------------------------GAAGACA--------------------TAACATTGAGAAATA-----AATATTTTATAAAAATAATAATTATTTTTTAA----TTTCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAAAATA--ATAATTTT--------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------------------TAATAAATAATAAAAA-----------------------------------------------TAAT------A-----------------------------------ATTT----------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAT-----------------------AAATA----------------------------------------------------------------------------------------------------ATAAAAATAATAATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--AA-A-----------------------------------------------------------------A--TTATTTCATAAAAAATA-----ATAATACGTAGTGGAA
droYak3 v2_chr2L_random_010:68502-68751 + GCAAATT-TCG---AAATTAA----ATTTAC-A----AAGGAA-------------------------CATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAAGCTTTTTGTCC--A--------------------------------------------------------------------------------------------------------------------------AAAACTC----------------------GCCGAACA-AAAG--AA-TATCATACA-AA--AAATAAATAAGAAGTTGA---CTTTT----------------------------------------GAGTGTCTAATA--------------------------------------------CTTGATGAAAATAATTTACAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCAGAAAAAAT---AATGCAAATAAAAAGAAACAAAGT----ACA----AAATGAATAA-------------------------------------------------CGTTTTGGTGTTTTAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------TTGAT-----------TTT--------------GGTGCAAATAGTCTAC---------------------AAATATTT-----A----------AAAAA
droEre2 scaffold_4748:44501-44749 + ATGAGCA-GCG---G--CAGCCGC----A-AC-A----------GCA-----------------GAA-TCAACA-----------------------------------TATATTTTTTAT----TTTTGTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGGGAAAGAGACCCATAAACAA--------------------------------------GCAA---------------------------TTGCAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGT------A-----------------------------------ATTT-------------------------------------TGCAGAGTACAAACGAATTTAAAAAGTGTTTAAAAACGAATT-----------------------------------------------------------TAAAAAATAATAGACGGCCCAAAATTATA-------------AACT----------------------GAAAATG------------------------------------------------CCTTAATAATT---------------------------------------------------------------------------------------TTTATAATTATTGCTAGTCTCAT--------------------------------------------------------------------------------------------------------------------------TTGA----------ATTTTCCCGAG-------------------------------------------------AAC----TAAGAACA-----A----------TTTAA
dp5 XR_group6:5359928-5360169 - CCCGGCT-TGG---A--CTAG----GCCTGG-G----ATTACGTAT------------------------------------------------------------------------------------------------------------------------------------CTG-----------------------------------------------------------------------------------------------TCCTTTGG----------------------------------------------------------------------------------------------------------------------------------------AAAACCAGCGGAATTCCACGGATTTTATA----A----------------------------------------------ATAAATAAATTTAAAAAAAAAAATAACAAATAAA---------------------------------------------------------------------------------------------AATAAACACAAATA---------------------------------------------------------------------------------------------------------------------------------------AATACAAATAATAAT---------------------------AAATAATAGTCCACTCAATATTATA-------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATTGTAAAACATATCAG-----CCATATGTCGG------------------------------------------------------------------------------------------------------CTATATCCAGGGATCCTGAGGATTATAGATTG-------------T-AAT----GAAATAAA-----A----------TAACA
droPer2 scaffold_763:12185-12407 + ATAATGT-AAA---CCATGGA----CTTGTT------------------G---------------------------AGTATTT--------AT--------TTTTGTAATTATTTTTTAA----TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATATG-----------------------------------TTAAAAAAA--------------------------------------------------------------------------TG----------------------AGTGCAAC-AAATTTATATTTC--------------------------------------------------------------------------------------------TTATAATTTTTAAAAATGATAAAAAAAACCAATGCATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------AATTGAATT---------------------------------------------------------------------------------------------------------------------------TAATTATAAATTCAAACATAATACAA---------------------------------------------------TTTAATTTTAAGAATTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATAATATAATA-------------T-AAC----AAATATAA-----T----------TTTAT
droWil2 scf2_1100000004921:736083-736352 + TTTCAAA-TTA---A--TTAA----ATATGC-T----GGCAAACGAGCC----------AACCGAAA-TTAACATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGAGCGCTTCGAA---------------------------------------------------------------------ATATTTATAAATA---------------------------------------------------------------------------AAATACACAAAACG-AAAAAGG--------------------------------------------GATAAATAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACTCGTTATTATA-------------AAAT----------------------GTAAATTTCATCATTTC--TAAACATAAAACACATATTT------------------------------ATTTGAAGTTT---TTAAATTTGATCGATATT-----------------------------------TGAAGAACTTTTCCACTTAAT-----------------------------------------------------------------------------------------------------------------------------------A----TTC-TAC-GTTAATATTAAAT---------TT--T---------------------------TG------TAAGA-----GA----AAATTAAG-----T----------TAAAT
droVir3 scaffold_13042:957028-957275 - CAACGTTGTCT---G--CTAC----ATTT---T----ATTCGATTCGCC-------ATT---GGGG--CGCATG---TGTAAAAGTTGTCACACGCACT------------------------------------------------------------------------------------------------------GGAGGTAGATATTCCCATCAAATATTACA------------------------------------------------------------------------A---AAAAAAA--AAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAACAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------------------------------AACTCTAGCTAAATAT-----------------------------------------------------GTTGTTAAATCTCCAAAAAAAAAAAAGCTAATGCTAAGTTTTTCTCTCTCTCTCTC-----TCT-TCCAATTTCTCTCTCTTTGAACC-------------------------------------------C--GTACA----AAAAAACT-----G----------AAAAA
droMoj3 scaffold_6496:7795641-7795849 + CATCAAA-ATT----------TGC----A-TG-T----------GC-------------------------------------------------------------------------------------TGCAAAAGGGCTAAAAAAAAAAAAATA------------------------------------------------------TTGCTA-------------------------------------------------------------------------------------------------------------------------------------------------------ACAA---------------------------TTTAAAAAA----------------------------------------------------------------------------------------------------------------------ATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAAACTAATTAAACAATTGCTTAAAAAAT-ATT-------------------------------------------------------------------------------------------------CAAA----AAATAAAAAAAACATTTCTATC-------TAAATATAAACGCGAACA--------------------------AGTGTCTTATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------AGTTAAAATAGTCTACA-AC-----A--AAAAT----TCATAAAA-----A----------AAAAG
droGri2 scaffold_14853:1795944-1796202 + AGGTGCA-TTA---T--CATC-ACAATGGTC-C----ACCACAGGCACC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGGTCTGAGTTTAGGCCTTG--GAC--------------------------------------------------------------------------------------------------------------------------CC----------------------GCTAGAAG-TAAGTAA--AATCC-CCAACAACAATTCTCAAGTAATTATAAATATACT----------------------------------------CATTTTGTACAAGTTGCCACA--------------------------------------------AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACTCAGAAAAAGA---AATTGACCTAAAATTTAGAAAATCACCTTAA----AAATTAGAAA----------------------------------------------------------------------------------------------------GTTTTTCTTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--GA-A----------ATTATTTCGAGAAATA--------------GTTGT-------------------------GA-----AAAGTACT-----G----------AAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCGCGTA-TCA---G--CAAC----GTTTGC-C----ATCAGGTGCACC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATTCACAGGTGAGTTT--------------------------------------------------------------------------------------------------------T------------GCTTTTTAA------------------ATATTT----TCTAAAAA-TAAGGGGGGAATCT-ATAAAAA--------------------------------------------CAAAAATAAATAAAATAATCTGTTATTTTACAAAAATTCTCATAATTATTAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA---AACTGGTCTAGGATTAAAAA------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------AACTA------------------------------------------------------------------------------------------------------------------------------GGACTTTAAATCTCTTTATC-----TCT-TGTAATTTTAAACTTTCTCGAGC-------------------------------------------A--ATAAG----AAATAAAA-----A----------TAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................GTTTGC-C----ATCAGGTGCACC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................ATCAGGTGCACC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droBip1
CCGCGTA-TCA---G--CAAC----GTTTGC-C----ATCAGGTGCACC------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATTCACAGGTGAGATATTT------------------------------------------------------------------------------------------------------------------------------------------TAACTACTTTATA----AAATAAAATTAAAAAAATA-AAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAATTAAAAAAAAAACTCAAGCCAAGTC---------------------------------------------------------------------------------------------------------------------------GAACTCTAGACTCGAACT---------------------------------------------------------------------------------------------------------------TGAAGAACTAAG----------------------------------------------------------------CC---TCTGGA------------------------------------------------------------------------------------------------------GTA--------------GGTTTAAGGAGTCAGG---------------------------AA-----C----------TTGATSizeHit CountTotal NormTotal
No Reads
droKik1
TCAACAA-C-A---G--CAACAGC----A-AC-T----------AC-------------------------------------------------------------------------------------TACTACAGAACAATAATAACAACAATCTCGAGGATGAAGTTTATTATTTGTTTTATAAAGATTTTT------------------A----------------------------------------------------------------------------------------------------------------------------------------------TGTAAGTTTCAACAA---------------------------TTTCAACAAGTATT--------------------------------------------ATGG--TA-TATTATCTA-AA--A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATTCAACAAAAACTGAAAAACAAATT--------------------------------------------------------------------------CAAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAACAAGCAGTTAAA-----------AAAATAATA-------AATGTTT-GCC----TA----TTT-TAT-AATTATTTTAAAT---------AT--ATATACAGG-------------------------------G--ATAAT--------TTCTAAAACA----------TAGCCSizeHit CountTotal NormTotal
No Reads
droFic1
ACAAATC-ATG---CAAGGTG----CTTGAT------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATATTAGTTATTAAGGATTTTTAATA------CGAAGACGGAAGCTTTTAA---------------------------------------------------------------------AAA---------------------------TTTATATAAAAATA--------------------------------------------ATTT--TA-TAATATATA-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCCAAATGATTAATAATGGAGAGGATATGATTAAGGCAAACACCTCACAGAAGAACTTAATCTATTAGAAATTTATGGTAAACTTAATTTCAATTATTGATCATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAAA-----ATAATA-----TGAAASizeHit CountTotal NormTotal
No Reads
droEle1
CCGATAA-GCA---C-----A----GCAAAC-A----GGAAAACACGTT----------AATGGAA------------------------ATGTTGTATAAAACGTATAAATAATTTATATACTGCTTCGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAACGGCAACCAACAACACACACGCAAACAAATAAATGATATATTTAA--------------ATATTTA-AAACAAACCACACAAGATGAA-CAACAACAACAAAAAA------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGTG------------------------------------------------TCTTAAAACGTAGTATTAGAAGTTTATTATTAATTTGTTTGTACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGT-AAAAT---------AT--T---------------------------TA------TAGAAAAAGAAA----AAATACAA-----A----------GATTTSizeHit CountTotal NormTotal
No Reads
droRho1
ATGCTCC-TCA---G--CAACAAC----A-AA-T----------GC-------------------------------------------------------------------------------------CAACAAGTGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------CAAACTA--------------------------------------------------------------------------------------------------------T------------GCTTCCCAA------------------G-----------------------------------------------------------------------------------------------------------------------------------TGAAAAAAGGAGAGAGTAAATTTAAATGTTCACTTGAAGTAAATAAATGGGATAA-AATCAGTA---------------------------------------------------------------------------------------------------------------------------------------AATATAAATACTTATCATATTAAACT--------------------------------------AAAATTAAG---------------------------------------------------------GAG-TTATGTTAACT---------------------------------------------------A--------AATG-------------------------------------------------------------------------------------------------------------------CC---TTTTAAATAGCTTAAACTAT----------------------------------------------------------------------------------C-----------------------------------AG----------T--T-GAT----AAAGAAAA-----A----------TATGASizeHit CountTotal NormTotal
No Reads
droBia1
CCTCGTA-TCA---G--CAACAGC----A-AT-A----------GCAAC-------ACT------------------------------------------------------------------------GA------------------------------GACAAAGTAAGCGGCGTGTTTTCCCTTGCAGCTAAAACGAAAACCGACTTTTCCACCAAATGAAAAAAACTAAATACGTTCTTTGGTAAATTTGATATGATTAAATTTTAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA---AATTGAGGCAACATT------------------------------------TTTAAA-------TAAATATTATGGCT-ACATTTTATAA---------------------------------------------------AGTAACCTTAAGATTGGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAACTAATTAAAAAC-----G--AGGCA----TTTTTAAA-----A----------CAAAASizeHit CountTotal NormTotal
No Reads
droTak1
GCAAGCA-GTT---------------TATGT-C----ATCCCATGGAGG------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATTTGAGAA----------------------------------------------------------------------------------------------------------------TGACTACAGCAAGGAT------------------TGTAAGTATTTAAGA----AAACAGAATAGGGAAATAT-GTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGATAAGATAAAGACAGAG--------------------------------------AAATTTAGTGGGATTTGGAGATCATTATAAAATAGGCAATATAAAGT---T-----------AAGACATAGGATTAAG-----------AAAGTGATA-------AATATTA-GGTTTTATAGATTATAA-AAAA----------GT---------------------------------------TTTACA-AAA---AT--TTAGT-------GGGTA-----A----------AAATASizeHit CountTotal NormTotal
No Reads
droEug1
CCATTCT-ATAACGGTAAGT------------------------GCTCTTGCCCTT-T-CAGCAGAT-CTGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTTTTGGCC--TTTGACTAGGCTGACCGAAATCAGCTAAAAAAGCTTAAATAAATGTTTAAAAAATGTTTATTTTAAGGATTAACAT---------------------------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CAATAACTATGAAATTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA----AAAAA-----------------------------------------------------------------------------------------------------ATAGACTTTGATATTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAAATTATTTATG-AT-----A--T-GAG----CTTTAAAA-----A----------TTAAASizeHit CountTotal NormTotal
No Reads
dm3
CCCCAAA-ACC---CAACCCG----GCCTGC-C----ACCATCAACATC---------------------------A-----------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGCTCACGGT------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------GCTGAAAG-TGAGTAAAGTTTCA-CCGAAAA---------------------------------------------------------------------------------------------------------------------------CTTGAACCAATCAAAAACCAAACTCTT------CAATA------------------------------------------------------------------------AAC--------------------------------------------CCAAGC------------------------TAAACCAAAATTAAAGCCCATTTAAAAAGTAA---AATACACG-------------------------------------------------GAAAATG------------------------------------------------CTGTAAAATGACATCTGATGCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGTTTGTGTTGCAACT-----TTT-GTAAAGC----------------------------------------------CCTAA---A---CT--T---A----AAACAAAA-----A----------AAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................T------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------GCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TCACGGT------A--CCAGGTCAGG-----------------------------------ATAGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGC----------------------------------------------CCTAA---A---CT--T---A----A............................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CGGCTCACGGT------A--CCAGGTCAGG-----------------------------------AT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ATCAACATC---------------------------A-----------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGCTCACGGT------A--CCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......A-ACC---CAACCCG----GCCTGC-C----AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCG----GCCTGC-C----ACCATCAACATC---------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CACGGT------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.CCCAAA-ACC---CAACCCG----GCCTGC-C----ACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTGCAACT-----TTT-GTAAAGC----------------------------------------------CCT...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T------A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................A--CCAGGTCAGG-----------------------------------ATAGAAAAT--------------------------------------------------------------------------TG----------------------GCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGTGTCATTC---A--TAAT----G----C-AAGCAATCAAA----TT-------------------------------------------------------------------------------------------------------------------GTTCAGTTAAATGCGTGTTTTCTATCGAATTTAAATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------AAGACT----TCTAAATA-TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGGTATGAAAAAAAAGCAAATGATATTTTTCAAATATTTTATAAACAATAATTTTCTACAACAAAT--------------------------------------------GCAGTCTAATAATGTACATGTTTTTCACCTTAAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTCAACTTTCCCACCC-----TTT-ATTAATT--------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ATTTTCC-AAA---A--A------------------------GAAGACA--------------------TAACATTGAGAAATA-----AATATTTTATAAAAATAATAATTATTTTTTAA----TTTCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAAAATA--ATAATTTT--------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------------------------TAATAAATAATAAAAA-----------------------------------------------TAAT------A-----------------------------------ATTT----------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAT-----------------------AAATA----------------------------------------------------------------------------------------------------ATAAAAATAATAATATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--AA-A-----------------------------------------------------------------A--TTATTTCATAAAAAATA-----ATAATACGTAGTGGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATA-----ATAATACGTAGTGGAA2230.3311000
..........A---A--A------------------------GAAGACA--------------------TAACATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000
......C-AAA---A--A------------------------GAAGACA--------------------TAACATTGAGAAATA-----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0511000
droYak3
GCAAATT-TCG---AAATTAA----ATTTAC-A----AAGGAA-------------------------CATGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAAGCTTTTTGTCC--A--------------------------------------------------------------------------------------------------------------------------AAAACTC----------------------GCCGAACA-AAAG--AA-TATCATACA-AA--AAATAAATAAGAAGTTGA---CTTTT----------------------------------------GAGTGTCTAATA--------------------------------------------CTTGATGAAAATAATTTACAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCAGAAAAAAT---AATGCAAATAAAAAGAAACAAAGT----ACA----AAATGAATAA-------------------------------------------------CGTTTTGGTGTTTTAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------TTGAT-----------TTT--------------GGTGCAAATAGTCTAC---------------------AAATATTT-----A----------AAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATGAGCA-GCG---G--CAGCCGC----A-AC-A----------GCA-----------------GAA-TCAACA-----------------------------------TATATTTTTTAT----TTTTGTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGGGAAAGAGACCCATAAACAA--------------------------------------GCAA---------------------------TTGCAGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGT------A-----------------------------------ATTT-------------------------------------TGCAGAGTACAAACGAATTTAAAAAGTGTTTAAAAACGAATT-----------------------------------------------------------TAAAAAATAATAGACGGCCCAAAATTATA-------------AACT----------------------GAAAATG------------------------------------------------CCTTAATAATT---------------------------------------------------------------------------------------TTTATAATTATTGCTAGTCTCAT--------------------------------------------------------------------------------------------------------------------------TTGA----------ATTTTCCCGAG-------------------------------------------------AAC----TAAGAACA-----A----------TTTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CCCGGCT-TGG---A--CTAG----GCCTGG-G----ATTACGTAT------------------------------------------------------------------------------------------------------------------------------------CTG-----------------------------------------------------------------------------------------------TCCTTTGG----------------------------------------------------------------------------------------------------------------------------------------AAAACCAGCGGAATTCCACGGATTTTATA----A----------------------------------------------ATAAATAAATTTAAAAAAAAAAATAACAAATAAA---------------------------------------------------------------------------------------------AATAAACACAAATA---------------------------------------------------------------------------------------------------------------------------------------AATACAAATAATAAT---------------------------AAATAATAGTCCACTCAATATTATA-------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATTGTAAAACATATCAG-----CCATATGTCGG------------------------------------------------------------------------------------------------------CTATATCCAGGGATCCTGAGGATTATAGATTG-------------T-AAT----GAAATAAA-----A----------TAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATAATGT-AAA---CCATGGA----CTTGTT------------------G---------------------------AGTATTT--------AT--------TTTTGTAATTATTTTTTAA----TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATATG-----------------------------------TTAAAAAAA--------------------------------------------------------------------------TG----------------------AGTGCAAC-AAATTTATATTTC--------------------------------------------------------------------------------------------TTATAATTTTTAAAAATGATAAAAAAAACCAATGCATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------AATTGAATT---------------------------------------------------------------------------------------------------------------------------TAATTATAAATTCAAACATAATACAA---------------------------------------------------TTTAATTTTAAGAATTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATAATATAATA-------------T-AAC----AAATATAA-----T----------TTTATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTCAAA-TTA---A--TTAA----ATATGC-T----GGCAAACGAGCC----------AACCGAAA-TTAACATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGAGCGCTTCGAA---------------------------------------------------------------------ATATTTATAAATA---------------------------------------------------------------------------AAATACACAAAACG-AAAAAGG--------------------------------------------GATAAATAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACTCGTTATTATA-------------AAAT----------------------GTAAATTTCATCATTTC--TAAACATAAAACACATATTT------------------------------ATTTGAAGTTT---TTAAATTTGATCGATATT-----------------------------------TGAAGAACTTTTCCACTTAAT-----------------------------------------------------------------------------------------------------------------------------------A----TTC-TAC-GTTAATATTAAAT---------TT--T---------------------------TG------TAAGA-----GA----AAATTAAG-----T----------TAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................TAACATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGAGCGCTTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000
droVir3
CAACGTTGTCT---G--CTAC----ATTT---T----ATTCGATTCGCC-------ATT---GGGG--CGCATG---TGTAAAAGTTGTCACACGCACT------------------------------------------------------------------------------------------------------GGAGGTAGATATTCCCATCAAATATTACA------------------------------------------------------------------------A---AAAAAAA--AAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAACAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------------------------------AACTCTAGCTAAATAT-----------------------------------------------------GTTGTTAAATCTCCAAAAAAAAAAAAGCTAATGCTAAGTTTTTCTCTCTCTCTCTC-----TCT-TCCAATTTCTCTCTCTTTGAACC-------------------------------------------C--GTACA----AAAAAACT-----G----------AAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................AAGTTGTCACACGCACT------------------------------------------------------------------------------------------------------GGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
......................................TTCGATTCGCC-------ATT---GGGG--CGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................AAGTTGTCACACGCACT------------------------------------------------------------------------------------------------------GGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
CATCAAA-ATT----------TGC----A-TG-T----------GC-------------------------------------------------------------------------------------TGCAAAAGGGCTAAAAAAAAAAAAATA------------------------------------------------------TTGCTA-------------------------------------------------------------------------------------------------------------------------------------------------------ACAA---------------------------TTTAAAAAA----------------------------------------------------------------------------------------------------------------------ATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAAACTAATTAAACAATTGCTTAAAAAAT-ATT-------------------------------------------------------------------------------------------------CAAA----AAATAAAAAAAACATTTCTATC-------TAAATATAAACGCGAACA--------------------------AGTGTCTTATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------AGTTAAAATAGTCTACA-AC-----A--AAAAT----TCATAAAA-----A----------AAAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGGTGCA-TTA---T--CATC-ACAATGGTC-C----ACCACAGGCACC------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGGTCTGAGTTTAGGCCTTG--GAC--------------------------------------------------------------------------------------------------------------------------CC----------------------GCTAGAAG-TAAGTAA--AATCC-CCAACAACAATTCTCAAGTAATTATAAATATACT----------------------------------------CATTTTGTACAAGTTGCCACA--------------------------------------------AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACACTCAGAAAAAGA---AATTGACCTAAAATTTAGAAAATCACCTTAA----AAATTAGAAA----------------------------------------------------------------------------------------------------GTTTTTCTTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--GA-A----------ATTATTTCGAGAAATA--------------GTTGT-------------------------GA-----AAAGTACT-----G----------AAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:21 AM