dan_1349

CDS [Dana\GF20894-cds]; exon [dana_GLEANR_4137:2]; CDS [Dana\GF20894-cds]; exon [dana_GLEANR_4137:1]; intron [Dana\GF20894-in]

Name	Class	Family	Strand
(TCC)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCGAAGCCTCTGCTGTCCTCCAAGTACGAGGCCCTGAGCGACGAGGATTAGTTGTGACTGCCGGCGTCTTAGTAGGCGTCGGCCACGCAGTCACACCTGCGGTCAGTGGGAGTAGGAGTAGGAGGAGGAGTTGGAGGAGGAGGAGTGCCCCAATCCCTGGTAGCCACCAGTAATGCCAGTCTGGTGTACGGATATCCCAGCTACCGGCGGCACTCGCAGTCACAGTTGCATCCGCAGCCGTTGTCGCCGC ************************************************....((((.((((((((((....))))))))))..(((((......))))))))).(((((......(((.....(((.(((((.((..........))))))).)))......((((((..........))))))))).....))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V105 male body	V039 embryo	M044 female body	V106 head	V055 head
...........................................................................................................................GGAGGAGTTGGAGGAGGAGGAGTGC......................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
..............................................................GGCGTCTTAGTCGGCGTCGGCCA.....................................................................................................................................................................	23	1	1	1.00	1	0	0	0	1	0	0
.......................GTATGAGACCCTGAGCGAC................................................................................................................................................................................................................	19	2	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................CGGATATCCCAGCTACCGGCGGCACT....................................	26	0	1	1.00	1	1	0	0	0	0	0
.......................................GACGAGGATTAGTTGTGAC................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................ATCCGCAGCCGTTGTCTCCG.	20	1	1	1.00	1	0	0	1	0	0	0
............................................GGATTAGTTGTGACTGCCGGC.........................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................GTTGCATCCGCAGCCGTTGT......	20	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................CGGATATCCCAGCTACCGGCGGCACC....................................	26	1	1	1.00	1	1	0	0	0	0	0
..............................................ATTAGTTGTGACTGCCGGC.........................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
...................................GAGCGACGAGGATTAGTT.....................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
...................CCAAGTACGAGGCCCTGAGC...................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................AGCCGCAGCCGTTGTCGCCGC	21	1	1	1.00	1	1	0	0	0	0	0
.............................................GATTAGTTGCGACTGCAGG..........................................................................................................................................................................................	19	2	1	1.00	1	0	1	0	0	0	0
........................................................................TCGGCGTCGGCCACGCAGTCACACC.........................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0
.......................................GACGAGGATTAGTTGTGACTGCC............................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	1	0
.....................AAGTACGATGCCCTCAGCGA.................................................................................................................................................................................................................	20	2	2	0.50	1	0	0	1	0	0	0
................................................................................................................................................................................................................................GTTACATCTGCAGCCCTTGTC.....	21	3	2	0.50	1	0	0	0	1	0	0
.........................ACAAGGCCCTGAGCGACCA..............................................................................................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0
...........................................................................................................................GTAGGTGTTGGAGGAGGAGGAGT........................................................................................................	23	2	2	0.50	1	1	0	0	0	0	0
........................................................................................................................GGAGGAGGAGTTGGAGGA................................................................................................................	18	0	7	0.14	1	0	0	0	1	0	0
......................................................................................................................................................CAATCCCGGGTCGGCACCA.................................................................................	19	3	16	0.06	1	0	1	0	0	0	0
........................................................................................................................GGAGGAGCAGTTGGAGTAG...............................................................................................................	19	2	20	0.05	1	1	0	0	0	0	0

GGCTTCGGAGACGACAGGAGGTTCATGCTCCGGGACTCGCTGCTCCTAATCAACACTGACGGCCGCAGAATCATCCGCAGCCGGTGCGTCAGTGTGGACGCCAGTCACCCTCATCCTCATCCTCCTCCTCAACCTCCTCCTCCTCACGGGGTTAGGGACCATCGGTGGTCATTACGGTCAGACCACATGCCTATAGGGTCGATGGCCGCCGTGAGCGTCAGTGTCAACGTAGGCGTCGGCAACAGCGGCG ************************************************....((((.((((((((((....))))))))))..(((((......))))))))).(((((......(((.....(((.(((((.((..........))))))).)))......((((((..........))))))))).....))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V055 head
.......................................................................................................................................................................................CACATGCCTATACTATCGAT...............................................	20	3	2	0.50	1	1	0
......................................................................................................................................................................................CCACATGCCTATACTATCGAT...............................................	21	3	2	0.50	1	1	0
.....CGGAGAAGTCAGGAGGTGCA.................................................................................................................................................................................................................................	20	3	6	0.17	1	0	1
....GCGGAGATGTCAGGAGGTTC..................................................................................................................................................................................................................................	20	3	11	0.09	1	0	1
......TGAGACGAAAGAAGGTTCAT................................................................................................................................................................................................................................	20	3	11	0.09	1	0	1
.........................................................................................................................................................................................................................CCAGTATCAACGTAGGCGTT.............	20	3	12	0.08	1	1	0
.......GCGACGTCAGGAGGTTC..................................................................................................................................................................................................................................	17	2	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13117:3498637-3498886 -	dan_1349	CCGAAGCCTCTGCTGTCCT-CCAAGTACGAGGCCCTGAGCGACGAGGATTAGTTGTGAC-------------TGCCGGCGTCTTAGTA-GGCGTCGGCCACGCAGTCACACCTGCGGTCAGTGGGAGTAGGAGTAGGAGGAGGAGTTGGAGG--------------------AGGAGGAGTGCCCCAATC---------------------CCTGGTAGCCA---------CC------------------A---GTAATGCCAGTCTGGTGTACGGATATCCCAGCTACCG---------------------------------GCGGCACTC-------GCAGTC---------------------ACAGTTGCATC------------CG------CAG------C------------CGTTGTCGCCGC-------
droBip1	scf7180000395895:56088-56322 +		CCGAAGCCTCTGCTGTCCT-CCAAGTACGAGGCCCTCAGCGACGAGGATTAGTTGTGAC-------------TGCCGGCGTCTTCGTC-GGCGTCGGCCACGCAGTCACACCTGCGGTCAGTAGGAGGAGGAGGAGGAGGAGTAC-----------------------------------CACCCCAGCC---------------------CATGGTGGCCA---------CC------------------A---GCAATGCCAGTCTAGTGTATGGCTATCCCAGCTATCG---------------------------------CCGCCACTC-------GCAGCC---------------------ACAGTTGCATC------------CG------CAG------C------------CGTTGTCGCCGC-------
droKik1	scf7180000302621:131581-131779 +		CCAAAGCCTTTGCTGTCGT-CCAAGTACGAGGCACTCAGCGACGAGGATTAGTTGTGAC-------------TGCCGGCGTCGTCGTC-GGCGTCGGC------GTCGCATCTGCGGCCAGCAGCGATAGCAGTAGCAACAGCAGCAGCAGC--------------------AG---------------------------------CA---------------------------------------------------ACCGGCACAGGCTACGGTTATCCTGGCTACCG---------------------------------GCGACAGTC-------ACA---------------------------------CACGCACCT------------------------------------AGCAACGCAGC-------
droFic1	scf7180000454050:481921-482179 -		CCGAAGCCGCTGCTGTCCT-CCAAGTACGAGGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCTTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCTGTAGCATCAGC--TCCCAGC--------------------AGCAGCAGCAACACAAACAGCAGCAGCAGCAGCGG---CA-------------------GC------------------G---GCAGCACGAGCGTGGTGTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAG---TCACAACCAACACAT------CCGCATCTTG---------------------------------------TCCAGC-------
droEle1	scf7180000491023:265015-265271 -		CCGAAGCCACTGCTGTCGT-CCAAGTACGAGGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCAGTAGCAGCAGCAGCAGCAGC--------------------AG------------------CGGCAGCAGCAGCTGCAGCACTTCCACCCG---------GC------------------A---GCAGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------TCAGCATCAACAG---------------------CAAC------------AG------CAA---CAAC------------AACAGCCACCACCACCAGC
droRho1	scf7180000779985:93801-94038 +		CCGAAGCCACTGCTGTCGT-CCAAGTACGACGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCAGTAGCAGCAAC--------------------------------------------------------------------TCTACCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAACAGCAGC------CACCACAT------CCGCATCTTGTCCAG------CAG------C------------AACAGTCGCCGC-------
droBia1	scf7180000298389:156863-157097 -		TCGAAGCCACTGCTGTTGT-CCAAGTACGATGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCCGTAGCAGCAGCAG-----------------------------------------------------------------CACTGCCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAACAGCA---A---CAACAGCAGCAGC------------AG------CAG------C------------AGCAGCCACCAC-------
droTak1	scf7180000413903:116974-117217 +		TCAAAGCCGCTGCTGTTGT-CCAAGTACGACGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCGC-GGCGTCGGC------GTCGCACCTGCGGCCAGGAGCAATAGCAGTAGCAGCGGCAG-----------------------------------------------------------------CACTGCCACCCG---------GC------------------AGCGGCGGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCAGCAGCAG---CC---ACCACCTCAT------CCGCATCTCGTCCAG------CAG------C------------AGCAGCAGCAGC-------
droEug1	scf7180000409110:970768-971011 -		TCGAAGCCATTGCTGTTGT-CCAAGTACGATGCCCTTAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCAGTAGCAGCAAC--------------------------------------------------------------------ATTACCGCCCG---------GC------------------A---GCAGCACGAGCGTTGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAACAACAGCC---ACCAACACAT------CCGCATCTTGTCCAG------CAG---CAGC------------AACAGTCGCCGC-------
dm3	chrX:12581167-12581383 -		TCCAAGCCGCTGCTGTTGT-CCAAGTACGATGCACTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCGACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTAACGCCCG---------GC------------------A---GCAGTACGAGCGTGGTATACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------TCAGCATCAGCAA---------------------CAAC------------AA------CAA------C------------AGCAACAACAAC-------
droSim2	x:11937173-11937395 -		TCCAAGCCGCTGCTGTTGT-CCAAGTACGACGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCGACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTACCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTATACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAA---------------------CAAC------------AA------CAACAACAGC------------AGCAGCCACCGC-------
droSec2	scaffold_1:5083530-5083758 -		CAGCAGCATTAGCGGCAGC-GCCAGTT--------TCAGCAGC-------------A-----------------ACAGCGGTGCCAGC-GGCAGCAGC------A------------------------------------G----------CCAAA-CGCACAGCACGGCCGTCAGCAGTGCCACAGATCGCAGCAACAACAACGGCAACAAT----CACAATCCGAGCTTACAACTGAATGGTAATGGTAGCAGCAACACGAG------------------------------------------------------------GCAACACAG--------CAGCGGCAGCAACAGCA---GACAACACAGCAGCAGC------------AG------CAG------C------------AGCAGCAGCAGT-------
droYak3	X:6857879-6858095 -	dya_1342	TCGAAGCCGCTGCTGTTGT-CCAAGTACGATGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTACCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTATACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAACAG---------------------CAAC------------AA------CAG------C------------AACAACAGCAAC-------
droEre2	scaffold_4690:14278322-14278516 +		TCGAAGCCGCTGCTGCTGT-CCAAGTACGATGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTGCCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTGTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAG--------------------------------------------------------------------------------------
dp5	Unknown_group_304:3734-3985 -		CGGAGGGCGCGGCAGGCGG-GCTGGCG-GTGATCTCCAGCGATGAGGAGGAGGCGGAGTGCC----------CACCAGCGCCGAAGGC-GGCTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGGCAGGAGAGG---CTAC----GACGAGCCGAGGTGG------------------A---GGAGGAAGAGCTCTGGCA---GCCACCC---------CCTGAACACGTCGAGTCCGAGGAGGAGCCGCGG-CCGCAGGCCCCACCTTCACCGGGGGC---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCGGCCGCCGG-------
droPer2	scaffold_60:340963-341202 +		CGGAGGGCGCGGCAGACGG-GCTGGCG-GTGATCTCCAGCGATGAGGAGGAGGCGGAGTGCC----------CACCAGCGCCGAAGGC-GGCTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGGCAGGAGAGG---CTGC----GACGAGCCGAGGTGG------------------A---GGAGGAAGAGCTCTGGCAA---CCACCC---------CCTGAACACGTCGAGTCCGAGGAGGAGCCGCGG-CCGCAGGCCCCACCGTCACCGGGGG------------------------C---------------AG----------AGGAAG------------AGCTGTTCCAGC-------
droWil2	scf2_1100000001422:1152-1380 +		TGGATGCGACGGCAGCGGCGGCGGGTACAGCAGTGGCAGTGGCGGCGGGT-----------CCAGCAGTGGCAGCGGGTGCA-GCAGT-GGCAGCGGC------GGCGGGT------------------------ACAGCAG----------T----------------------------GGCAGCGGGTACAGCAGTGGCAGCGGC---GGCG-GGTACA---------GC------------------A---GTGGCAGCGGTGGTGGGTACAGCAGTGG----CAGTG---------------------------------GCGGCGGGT-------CCAGCAGTGGCAGCGGGT---------GCAGCAGTGGC------------AG------CGG------C------------GGCGGGTACAGC-------
droVir3	scaffold_12928:2231316-2231502 -		CCAAAGCCTCTGCTGTCCT-CCAAATATGAGGCGCTTAGCGACGAAGATTAGTTGTGAC-------------TGCAGGCGTCGTCGTCCGGCATG-----CGCAG-----TCTGACGGCAGCAGCGACGGCGCCTCCAGCAG----------CCCATCCACAT----------------------------------------------------------------------------------------------------AACGCAGCCAACGTCTATC-------------------------------------------------------------AACATCCGCAG---------------------CAGC------------AGCATCACCAG------C------------AGCAGCAGCAGC-------
droMoj3	scaffold_6473:14010812-14011019 -		CCAAAGCCTCTGCTCTCAT-CGAAGTACGAAGCGCTCAGCGACGAAGATTAGTTGTGAC-------------TGCAGGCGTCGTCGTCCGGCATG-----CGCAG-----TCTGACGGCAGCAGCGACGACGCCTCCAGCAG----------CCAATCAACACAGCGCAGCC----------------------------------------------------------------------------------------------AATGTCTACCAGCACCAGCAGCACCA---------------------------------GCAGCACCA-------ACAGCA---------------------CCAACAGCAGC------------AG------CAG------C------------AGCCGCAGCCGC-------
droGri2	scaffold_15203:5113364-5113608 +		CCAAAGCCGCTGCTGTCCT-CCAAATATGAGGCGCTCAGCGACGAAGATTAGTTGTGAC-------------TGCAGGCGTCGTCGTCCGGCATG-----CGAAC-----TCTGACGGCAGCAGCGACGGCGCCTCCAGCAG----------CTAATTCACACAGCGCAGCCAACGCC-----TACCAACAGCAGCAGCAGCAGCAG---CAG--------CAGAT-------------------------------------TACGTGGACTA-----GTGCCGGCTATCG---------------------------------ACGTCATCA-------TCTGCC---------------------ACAGTCGCAGC------------CG------CAG------C------------CGCAGCCAACGT------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CCGAAGCCTCTGCTGTCCT-CCAAGTACGAGGCCCTGAGCGACGAGGATTAGTTGTGAC-------------TGCCGGCGTCTTAGTA-GGCGTCGGCCACGCAGTCACACCTGCGGTCAGTGGGAGTAGGAGTAGGAGGAGGAGTTGGAGG--------------------AGGAGGAGTGCCCCAATC---------------------CCTGGTAGCCA---------CC------------------A---GTAATGCCAGTCTGGTGTACGGATATCCCAGCTACCG---------------------------------GCGGCACTC-------GCAGTC---------------------ACAGTTGCATC------------CG------CAG------C------------CGTTGTCGCCGC-------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................GGAGGAGTTGGAGG--------------------AGGAGGAGTGC.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................CGGATATCCCAGCTACCG---------------------------------GCGGCACT...........................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................GACGAGGATTAGTTGTGAC-------------................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.............................................GGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GTTGCATC------------CG------CAG------C------------CGTTGT.............	20	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................CGGATATCCCAGCTACCG---------------------------------GCGGCACC...........................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................ATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
....................................GAGCGACGAGGATTAGTT..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
....................CCAAGTACGAGGCCCTGAGC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................GACGAGGATTAGTTGTGAC-------------TGCC............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................GGAGGAGGAGTTGGAGG--------------------A...........................................................................................................................................................................................................................................................................	18	7	0.14	1	1	0	0	0	0	0

droBip1

CCGAAGCCTCTGCTGTCCT-CCAAGTACGAGGCCCTCAGCGACGAGGATTAGTTGTGAC-------------TGCCGGCGTCTTCGTC-GGCGTCGGCCACGCAGTCACACCTGCGGTCAGTAGGAGGAGGAGGAGGAGGAGTAC-----------------------------------CACCCCAGCC---------------------CATGGTGGCCA---------CC------------------A---GCAATGCCAGTCTAGTGTATGGCTATCCCAGCTATCG---------------------------------CCGCCACTC-------GCAGCC---------------------ACAGTTGCATC------------CG------CAG------C------------CGTTGTCGCCGC-------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAAAGCCTTTGCTGTCGT-CCAAGTACGAGGCACTCAGCGACGAGGATTAGTTGTGAC-------------TGCCGGCGTCGTCGTC-GGCGTCGGC------GTCGCATCTGCGGCCAGCAGCGATAGCAGTAGCAACAGCAGCAGCAGC--------------------AG---------------------------------CA---------------------------------------------------ACCGGCACAGGCTACGGTTATCCTGGCTACCG---------------------------------GCGACAGTC-------ACA---------------------------------CACGCACCT------------------------------------AGCAACGCAGC-------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGAAGCCGCTGCTGTCCT-CCAAGTACGAGGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCTTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCTGTAGCATCAGC--TCCCAGC--------------------AGCAGCAGCAACACAAACAGCAGCAGCAGCAGCGG---CA-------------------GC------------------G---GCAGCACGAGCGTGGTGTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAG---TCACAACCAACACAT------CCGCATCTTG---------------------------------------TCCAGC-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCGAAGCCACTGCTGTCGT-CCAAGTACGAGGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCAGTAGCAGCAGCAGCAGCAGC--------------------AG------------------CGGCAGCAGCAGCTGCAGCACTTCCACCCG---------GC------------------A---GCAGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------TCAGCATCAACAG---------------------CAAC------------AG------CAA---CAAC------------AACAGCCACCACCACCAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCGAAGCCACTGCTGTCGT-CCAAGTACGACGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCAGTAGCAGCAAC--------------------------------------------------------------------TCTACCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAACAGCAGC------CACCACAT------CCGCATCTTGTCCAG------CAG------C------------AACAGTCGCCGC-------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGAAGCCACTGCTGTTGT-CCAAGTACGATGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCCGTAGCAGCAGCAG-----------------------------------------------------------------CACTGCCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAACAGCA---A---CAACAGCAGCAGC------------AG------CAG------C------------AGCAGCCACCAC-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCAAAGCCGCTGCTGTTGT-CCAAGTACGACGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCGC-GGCGTCGGC------GTCGCACCTGCGGCCAGGAGCAATAGCAGTAGCAGCGGCAG-----------------------------------------------------------------CACTGCCACCCG---------GC------------------AGCGGCGGCACGAGCGTGGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCAGCAGCAG---CC---ACCACCTCAT------CCGCATCTCGTCCAG------CAG------C------------AGCAGCAGCAGC-------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCGAAGCCATTGCTGTTGT-CCAAGTACGATGCCCTTAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAGCAATAGCAGTAGCAGCAAC--------------------------------------------------------------------ATTACCGCCCG---------GC------------------A---GCAGCACGAGCGTTGTCTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAACAACAGCC---ACCAACACAT------CCGCATCTTGTCCAG------CAG---CAGC------------AACAGTCGCCGC-------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCCAAGCCGCTGCTGTTGT-CCAAGTACGATGCACTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCGACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTAACGCCCG---------GC------------------A---GCAGTACGAGCGTGGTATACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------TCAGCATCAGCAA---------------------CAAC------------AA------CAA------C------------AGCAACAACAAC-------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................CTCAGCGACGAAGATTAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	43.00	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	32	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	3	0	3	0	0	0
.........................................ACGAAGATTAGTTGTGAC-------------TGCT............................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................GAC-------------TGCCGGCGTCGTCATC-GG.............................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0
.................................................................................................................................................................................................................................................................AGTACGAGCGTGGTATACGGC..................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................GTCGTCATC-GGCGTCGGC------GTCGCA..........................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................C-GGCGTCGGC------GTCGCACCTGC.....................................................................................................................................................................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................C------------------A---GCAGTACGAGCGTGGTATA......................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................AGTACGAGCGTGGTATACGGCTATCCT............................................................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................GT-CCAAGTACGATGCACTCAGC................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................AATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACT..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TCGCACCTGCGGCCAGCGACA..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................GC--------------------------------------------------------------------ACTAACGCCCG---------GC------------------A---GCA......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CTATCCTGGCTACCG---------------------------------GCGA...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGT-CCAAGTACGATGCACTCAGCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATCAGCAA---------------------CAAC------------AA------CAA------C------------AGC................	21	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCCAAGCCGCTGCTGTTGT-CCAAGTACGACGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCGACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTACCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTATACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAA---------------------CAAC------------AA------CAACAACAGC------------AGCAGCCACCGC-------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................GATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AGATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTCATC-GGCGTCGGC------GTC.............................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTCGTCATC-GGCGTCGGC------................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATTAGTTGTGAC-------------TGCCGG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GTCGGC------GTCGCACCTGCGGC..................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................GTCGTCATC-GGCGTCGGC------GTC.............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................GCACGAGCGTGGTATACGGCTATCCTGGA.........................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................TTAGTTGTGAC-------------TGCCGGCGT.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................AAGATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTCATC-GGCGTCGGC------GTCGC...........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTCATC-GGCGTCGGC------GTCGCACCTGC.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CGAAGATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTCGTCATC-GGCGTCGGC------GTCGCACCT.......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GCACGAGCGTGGTATACGGCTATCCT............................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CGAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCGACAATAGCAGTAGCA..............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................CGACGAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGACGAAGATTAGTTGTGAC-------------TGCC............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCCGGCT........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GACGAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

CAGCAGCATTAGCGGCAGC-GCCAGTT--------TCAGCAGC-------------A-----------------ACAGCGGTGCCAGC-GGCAGCAGC------A------------------------------------G----------CCAAA-CGCACAGCACGGCCGTCAGCAGTGCCACAGATCGCAGCAACAACAACGGCAACAAT----CACAATCCGAGCTTACAACTGAATGGTAATGGTAGCAGCAACACGAG------------------------------------------------------------GCAACACAG--------CAGCGGCAGCAACAGCA---GACAACACAGCAGCAGC------------AG------CAG------C------------AGCAGCAGCAGT-------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................CGCAGCAACAACAACGGC........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AG------CAG------C------------AGCAGCAGCAGT-------	22	20	0.05	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AG------CAG------C------------AGCAGCAGCAG........	21	20	0.05	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------------AG------CAG------C------------AGCAGCAG...........	21	20	0.05	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCAGC------------AG------CAG------C------------AGC................	21	20	0.05	1	0	0	1	0

droYak3

TCGAAGCCGCTGCTGTTGT-CCAAGTACGATGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCATC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTACCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTATACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAACAG---------------------CAAC------------AA------CAG------C------------AACAACAGCAAC-------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................GTCGTCATC-GGCGTCGGC------GTC.............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................GACGAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................GCACCTGCGGCCAGCAACAATAGCAGT..................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................AACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTAC................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.............................ATGCCCTCAGCGACGAAGATTAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................TCGGC------GTCGCACCTGCGGCCAGCAACAA.........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................ACCGCCCG---------GC------------------A---GCAGCACGAGC..............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................GATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................ACTACCGCCCG---------GC------------------A---GCAGCA...................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CG---------------------------------GCGACACTC-------CCAGCATCA..........................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................ACGAAGATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................ATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CACGAGCGTGGTATACGGC..................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCC............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................ACTACCGCCCG---------GC------------------A---GCAGCACG.................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GGCCAGCAACAATAGCAGT..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................GTCATC-GGCGTCGGC------GTCGCAC.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................CAAGTACGATGCCCTCAGCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................GTCATC-GGCGTCGGC------GTC.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATACGGCTATCCTGGCTACC.....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TATCCTGGCTACCG---------------------------------GCGA...............................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................TGT-CCAAGTACGATGCCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................GTCGGC------GTCGCACCTGCGGCCAGC..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................................CGAAGATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................GACGAAGATTAGTTGTGAC-------------TGCCGGCGT.......................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................G---------------------------------GCGACACTC-------CCAGCATCAACA.......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TCGAAGCCGCTGCTGCTGT-CCAAGTACGATGCCCTCAGCGACGAAGATTAGTTGTGAC-------------TGCCGGCGTCGTCCTC-GGCGTCGGC------GTCGCACCTGCGGCCAGCAACAATAGCAGTAGCAGCAGC--------------------------------------------------------------------ACTGCCGCCCG---------GC------------------A---GCAGCACGAGCGTGGTGTACGGCTATCCTGGCTACCG---------------------------------GCGACACTC-------CCAGCATCAGCAG--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................ATTAGTTGTGAC-------------TGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	0	0	0	1	0
..................................................................................GTCCTC-GGCGTCGGC------GTC.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................AGTAGCAGCAGC--------------------------------------------------------------------ACTGCCGCCCG---------GC------------------A---GC.......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
..............................................GATTAGTTGTGAC-------------TGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................TCGGC------GTCGCACCTGCGGCCAGCAACA..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GGCTACCG---------------------------------GCGACACTC-------CCAGC..............................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................GTCCTC-GGCGTCGGC------GTCGCACCTGCGGC..................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................AGCACGAGCGTGGTGTACGG...................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................................................................................GTCGGC------GTCGCACCTGCGGCCAGC..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................GTGTACGGCTATCCTGGCTACCG---------------------------------GC.................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CGAGCGTGGTGTACGGCTATCC.............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dp5

CGGAGGGCGCGGCAGGCGG-GCTGGCG-GTGATCTCCAGCGATGAGGAGGAGGCGGAGTGCC----------CACCAGCGCCGAAGGC-GGCTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGGCAGGAGAGG---CTAC----GACGAGCCGAGGTGG------------------A---GGAGGAAGAGCTCTGGCA---GCCACCC---------CCTGAACACGTCGAGTCCGAGGAGGAGCCGCGG-CCGCAGGCCCCACCTTCACCGGGGGC---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCGGCCGCCGG-------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---G...................................................................................................................................................................	22	3	149.00	447	0	9	0	0	0	0	0	437	1	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GC..................................................................................................................................................................	23	3	100.33	301	0	7	0	0	0	0	0	293	0	1
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGA.........................................................................................................................................................................................................................................................	22	5	44.20	221	0	209	6	0	1	0	3	2	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------....................................................................................................................................................	20	4	36.25	145	2	141	0	1	0	1	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAG........................................................................................................................................................................................................................................................	23	5	31.20	156	0	148	2	1	0	0	2	3	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------C...................................................................................................................................................	21	4	27.25	109	0	109	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGC........................................................................................................................................................................	20	6	26.17	157	0	4	0	0	0	0	0	153	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAG..........................................................................................................................................................................................................................................................	21	5	21.20	106	0	106	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---....................................................................................................................................................................	21	4	18.50	74	0	7	0	0	0	0	0	67	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTG................................................................................................................................................	24	3	16.33	49	0	46	0	0	0	0	3	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CC..................................................................................................................................................	22	4	14.50	58	1	57	0	0	0	0	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATG............................................................................................................................................................................................................................................................................................................................................................................................................	22	10	13.90	139	0	139	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACC..............................................................................................................................................................	19	4	13.25	53	0	53	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCT.................................................................................................................................................	23	3	11.67	35	0	34	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAG..................	22	3	11.67	35	0	35	0	0	0	0	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................	23	10	11.00	110	0	110	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCC.................................................................................................................................................................	24	3	9.67	29	0	1	0	0	0	0	0	28	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGT.................	23	3	9.33	28	0	28	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGA..........................................................................................................................	22	7	7.86	55	0	51	0	0	0	0	4	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................	25	10	7.60	76	0	76	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGAGC........................................................................................................................	24	7	7.14	50	0	42	3	0	1	0	3	1	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTGA...............................................................................................................................................	25	3	7.00	21	0	21	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGAG.........................................................................................................................	23	7	7.00	49	0	48	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGG...........................................................................................................................	21	7	6.29	44	0	42	0	0	0	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGA...................	21	3	6.00	18	0	17	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCCA................................................................................................................................................................	25	3	5.67	17	0	1	0	0	0	0	0	16	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGG.......................................................................................................................................................................................................................................................	24	5	4.80	24	0	22	0	0	0	0	2	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................	26	10	4.60	46	0	44	0	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTC................	24	3	4.33	13	0	13	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGCA---G...................................................................................................................................................................	23	3	4.33	13	0	1	0	0	0	0	1	10	1	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAG.....................................................................................................................................................................................................................................................	26	4	4.25	17	0	13	0	0	0	0	4	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAA...........................................................................................................................................................................................................................................................	20	5	3.80	19	0	19	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGA......................................................................................................................................................................................................................................................	25	5	3.80	19	0	18	0	0	0	0	1	0	0	0
.....................CTGGCG-GTGATCTCCAGCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................	21	10	3.70	37	0	37	0	0	0	0	0	0	0	0
..........................................................TGCC----------CACCAGCGCCGAAGGC-GGCTC..........................................................................................................................................................................................................................................................................................................................................................	25	2	3.50	7	0	7	0	0	0	0	0	0	0	0
..........................................................TGCC----------CACCAGCGCCGAAGGC-GGCT...........................................................................................................................................................................................................................................................................................................................................................	24	2	3.50	7	0	4	0	0	0	0	0	3	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGA............................................................................................................................................................................................................................................................	19	5	3.40	17	0	17	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------C...................................................................................................................................................	20	4	3.25	13	0	13	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGG.........................................................................................................................................................................................................................................................	22	5	2.80	14	0	12	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................GGAGAGG---CTAC----GACGAGCCGAGG..................................................................................................................................................................................................................	23	7	2.71	19	0	19	0	0	0	0	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGA......................................................................................................................................................................................................................................................	22	10	2.70	27	0	26	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GT..................................................................................................................................................................	23	3	2.67	8	0	0	0	0	0	0	0	8	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------CCTG................................................................................................................................................	23	3	2.67	8	0	8	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCG.............................................................................................................................................................................................................................................................	18	5	2.60	13	0	13	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------CC..................................................................................................................................................	21	4	2.50	10	0	10	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACA..............................................................................................................................................................	19	6	2.33	14	0	14	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCGG..............	26	3	2.33	7	0	7	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------CCT.................................................................................................................................................	22	3	2.33	7	0	7	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGG.........................................................................................................................................................................	19	7	2.29	16	0	3	0	0	0	0	0	13	0	0
...................................................................................................................................................................................................TGGCAGGAGAGG---CTAC----GACGAGC.......................................................................................................................................................................................................................	23	8	2.13	17	0	17	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTGAA..............................................................................................................................................	26	3	2.00	6	0	5	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCG...............	25	3	2.00	6	0	6	0	0	0	0	0	0	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGA.........................................................................................................................................................................................................................................................	21	5	2.00	10	0	10	0	0	0	0	0	0	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAG........................................................................................................................................................................................................................................................	22	5	2.00	10	0	10	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGA.............................................................................................................................	19	7	2.00	14	0	14	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGCA---GC..................................................................................................................................................................	24	3	2.00	6	0	1	0	0	0	0	0	5	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCA---------....................................................................................................................................................	20	4	1.75	7	0	7	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGAACACGTCGAGTCCGAGGAGGAGC........................................................................................................................	26	7	1.71	12	0	0	0	0	0	0	0	12	0	0
.....................CTGGCG-GTGATCTCCAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................	20	13	1.69	22	0	20	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GA..................................................................................................................................................................	23	3	1.67	5	0	1	0	0	0	0	0	4	0	0
........................................................................................................................................................................................................................................G------------------A---GGAGGAAGAGCTCTGGCA---GC..................................................................................................................................................................	22	3	1.67	5	0	4	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTGAAC.............................................................................................................................................	27	3	1.67	5	0	5	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAG....................	20	3	1.67	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGAGT.................	22	3	1.67	5	0	5	0	0	0	0	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGACC............................................................................................................................................................................................................................................................................................................................................................................................................	22	13	1.62	21	0	20	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAG............................................................................................................................	20	7	1.57	11	0	10	1	0	0	0	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................	25	10	1.50	15	0	10	1	0	0	0	0	4	0	0
..............................................................................................................................................................................................................G---CTAC----GACGAGCCGAGGTGG------------------.............................................................................................................................................................................................	20	7	1.43	10	0	8	0	0	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGG..............................................................................................................................	18	7	1.43	10	0	10	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................G------------------A---GGAGGAAGAGCTCTGGCA---G...................................................................................................................................................................	21	3	1.33	4	0	1	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGA.................	23	3	1.33	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACACGTCGAGTCCGAGGAGGA..........................................................................................................................	21	7	1.29	9	0	9	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GGAAGAGCTCTGGCA---GCCACC..............................................................................................................................................................	21	4	1.25	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------....................................................................................................................................................	19	4	1.25	5	0	5	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GGAGAGG---CTAC----GACGAGCCGAG...................................................................................................................................................................................................................	22	8	1.25	10	0	10	0	0	0	0	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAG.....................................................................................................................................................................................................................................................	23	9	1.22	11	0	9	0	0	0	0	2	0	0	0
........................................................................................................................................................................................................GGAGAGG---CTAC----GACGAGCCGAGGTG................................................................................................................................................................................................................	25	5	1.20	6	0	6	0	0	0	0	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................	24	10	1.20	12	0	11	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGAGG........................................................................................................................	24	7	1.14	8	0	8	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAC----GACGAGCCGAGGTGG------------------A---GG.......................................................................................................................................................................................	21	7	1.14	8	0	5	1	0	0	0	2	0	0	0
..GAGGGCGCGGCAGGCGG-G...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	1.11	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGAG..................	21	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GTAG................................................................................................................................................................	25	5	1.00	5	0	0	0	0	0	0	0	5	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GTG.................................................................................................................................................................	24	5	1.00	5	0	0	0	0	0	0	0	5	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTGAACA............................................................................................................................................	28	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..................................TCCAGCGATGAGGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................	19	10	1.00	10	0	9	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGAGCC.......................................................................................................................	25	7	1.00	7	0	7	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCCACCC---------C...................................................................................................................................................	29	3	1.00	3	0	0	0	0	0	0	0	3	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGAGCCG......................................................................................................................	26	4	1.00	4	0	2	0	0	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................GAGCTCTGGCA---GCCACCC---------CC..................................................................................................................................................	20	4	1.00	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---T...................................................................................................................................................................	22	5	1.00	5	0	0	0	0	0	0	0	5	0	0
..........................................................................................................................................................................................................................................................................TCTGGCA---GCCACCC---------CCTGAACACGT.........................................................................................................................................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------CCTGA...............................................................................................................................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTT................................................................................................................................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..........................................................TGCC----------CACCAGCGCCGAAGGC-GG.............................................................................................................................................................................................................................................................................................................................................................	22	6	1.00	6	0	6	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCCAC...............................................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	0	3	0	0
......................TGGCG-GTGATCTCCAGCGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.90	9	0	9	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................G---CTAC----GACGAGCCGAGGTG................................................................................................................................................................................................................	19	7	0.86	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CAGGAGAGG---CTAC----GACGAGCCGAGG..................................................................................................................................................................................................................	25	7	0.86	6	0	6	0	0	0	0	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.80	8	0	7	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................GGAGAGG---CTAC----GACGAGCCGAGGT.................................................................................................................................................................................................................	24	5	0.80	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GATG................................................................................................................................................................	25	5	0.80	4	0	0	0	0	0	0	0	4	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGG.......................................................................................................................................................................................................................................................	23	5	0.80	4	0	4	0	0	0	0	0	0	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAG..........................................................................................................................................................................................................................................................	20	5	0.80	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGT....................................................................................................................................................................................................................................................	27	4	0.75	3	0	2	0	0	0	0	1	0	0	0
.....................CTGGCG-GTGATCTCCAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.69	9	0	9	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCGGC.............	27	3	0.67	2	0	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................G----------AGGAAGAGCTGCTCCAGAG..................	20	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCCT................................................................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	2	0	0
...........................................................................................................................................................................................................................................................A---GGAGGAAGAGCTCTGGCA---GC..................................................................................................................................................................	21	3	0.67	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................AGCTCTGGCA---GCCACCC---------CCTGAAC.............................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCA.................................................................................................................................................................	24	3	0.67	2	0	0	0	0	0	0	0	2	0	0
.......................................................................................................................................................................................................................................................................AGCTCTGGCA---GCCACCC---------CCTGA...............................................................................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAAAA................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACCC---------CCTGAA..............................................................................................................................................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGAGTC................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCTGGCA---GCCACCC---------CCTGAACACGTC........................................................................................................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCA.....................	19	3	0.67	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGCA---....................................................................................................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGAGTCG...............	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGGCAGGAGAGG---CTAC----GACGAGCC......................................................................................................................................................................................................................	24	8	0.63	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGGCAGGAGAGG---CTAC----GACGA.........................................................................................................................................................................................................................	21	8	0.63	5	0	5	0	0	0	0	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.62	8	0	6	1	0	1	0	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATGAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.60	6	0	6	0	0	0	0	0	0	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGA......................................................................................................................................................................................................................................................	24	5	0.60	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGA.......................................................................................................................................................................................................................................................	24	5	0.60	3	0	2	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAC----GACGAGCCGAGGTGG------------------A---GGA......................................................................................................................................................................................	22	7	0.57	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACACGTCGAGTCCGAGGAGGAGGA.......................................................................................................................	25	7	0.57	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................G---CTAC----GACGAGCCGAGGTGG------------------A---GG.......................................................................................................................................................................................	23	7	0.57	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CC---------CCTGAACACGTCGAGTCCGAGG..............................................................................................................................	24	7	0.57	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CC---------CCTGAACACGTCGAGTCCG.................................................................................................................................	21	7	0.57	4	0	4	0	0	0	0	0	0	0	0
............................................................CC----------CACCAGCGCCGAAGGC-GGCTC..........................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGG.......................................................................................................................................................................................................................................................	21	10	0.50	5	0	5	0	0	0	0	0	0	0	0
................................................................................CCGAAGGC-GGCTCGAGT------------CCAGTCGC------------------------------------------------------------------................................................................................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.50	5	0	4	0	0	0	0	0	1	0	0
.........................................................GTGCC----------CACCAGCGCCGAAGGC-GG.............................................................................................................................................................................................................................................................................................................................................................	23	6	0.50	3	0	0	0	0	0	0	0	3	0	0
......................TGGCG-GTGATCTCCAGCGATG............................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.50	5	0	5	0	0	0	0	0	0	0	0
..........................................................TGCC----------CACCAGCGCCGAAGGC-GGCTA..........................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGAGCTCTGGCA---GCCACC..............................................................................................................................................................	18	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GGAAGAGCTCTGGCA---GCCACCC---------CC..................................................................................................................................................	24	4	0.50	2	0	1	1	0	0	0	0	0	0	0
...........................................................GCC----------CACCAGCGCCGAAGGC-GG.............................................................................................................................................................................................................................................................................................................................................................	21	6	0.50	3	0	3	0	0	0	0	0	0	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAG.....................................................................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.....................................................CGGAGTGCC----------CACCAGCGCCGAAGGC-GG.............................................................................................................................................................................................................................................................................................................................................................	27	6	0.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCAGAGTCGGCCG...........	18	4	0.50	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGGCAGGAGAGG---CTAC----GACGAG........................................................................................................................................................................................................................	22	8	0.50	4	0	3	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................GGCAGGAGAGG---CTAC----GACGAGC.......................................................................................................................................................................................................................	22	8	0.50	4	0	4	0	0	0	0	0	0	0	0
..........................................................TGCC----------CACCAGCGCCGAAGGC-GGCTCGA........................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................GGAAGAGCTCTGGCA---GCCAC...............................................................................................................................................................	20	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGG..................................................................................................................................................................................................................................................	26	9	0.44	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAC----GACGAGCCGAGGTGG------------------.............................................................................................................................................................................................	18	7	0.43	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTG..........................................................................................................................................................................	18	7	0.43	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................................................................................................................TGAACACGTCGAGTCCGAGGAGGA..........................................................................................................................	24	7	0.43	3	0	2	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................G---CTAC----GACGAGCCGAGGTGG------------------A---.........................................................................................................................................................................................	21	7	0.43	3	0	3	0	0	0	0	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.40	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAA........................................................................................................................................................................................................................................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAAA....................................................................................................................................................................................................................................................	27	5	0.40	2	0	1	1	0	0	0	0	0	0	0
............................................................................................TCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGG.........................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.........................CG-GTGATCTCCAGCGATGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.40	4	0	4	0	0	0	0	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGCGGAG..............................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.40	4	0	2	0	0	0	0	0	2	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGT............................................................................................................................................................................................................................................................	19	5	0.40	2	0	1	0	0	1	0	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.40	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAA..........................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGC........................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.........................CG-GTGATCTCCAGCGATGAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.40	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CAGGAGAGG---CTAC----GACGAGCCG.....................................................................................................................................................................................................................	22	8	0.38	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGCA---GCCACCC---------CCTGAACACGTC........................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GAA.................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTT................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTC................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGCA---GCCACCC---------CCTGAACACGTCA.......................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCAGT...............................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	1	0	0
...........................................................................CAGCGCCGAAGGC-GGCTCGAG.......................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGCA---GCC.................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GC---------------------------------------AG----------AGGAAGAGCTGCTCCAGAG..................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCTGGCA---GCCACCC---------CCTGAACACG..........................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................CACCAGCGCCGAAGGC-GGCTCGAG.......................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCTGGCA---GCCACCC---------CCTG................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GAAGAGCTCTGGCA---GCCACCC---------CCTG................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGA...................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGAGTCGG..............	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GG------------------A---GGAGGAAGAGCTCTGGCA---GCCAT...............................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................AGCTCTGGCA---GCCACCC---------CCTGAAA.............................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GC---------------------------------------AG----------AGGAAGAGCTGCTCCAG....................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGCA---GCCACCC---------CCTGAACAA...........................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................ACCAGCGCCGAAGGC-GGCTCG.........................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGAGCTGCTCCAGAGTCGGCC............	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................G------------------A---GGAGGAAGAGCTCTGGCA---GCCA................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AG----------AGGAAGAGCTGCTCCAGAGAG................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................G----------AGGAAGAGCTGCTCCAGAGTCG...............	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCTGGCA---GCCACCC---------CCTGAACACGTCGAG.....................................................................................................................................	29	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GAGCTCTGGCA---GCCACCC---------CCT.................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGAA................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCGGG.............	27	3	0.33	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGCA---GCA.................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................AAGAGCTCTGGCA---GCCACCC---------CCTGT...............................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................C---------------------------------------AG----------AGGAAGAGCTGCTCCAGAGTCGT..............	26	3	0.33	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................T------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGG..................................................................................................................................................................................................................................................	23	9	0.33	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCTCTGGCA---GCCACCC---------CCTGG...............................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGGCA---GCCACCC---------CCTGAACACG..........................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGG------------------A---GGAGGAAGAGCTCTGGCA---GCCA................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................TCTCCAGCGATGAGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.30	3	0	3	0	0	0	0	0	0	0	0
....................................CAGCGATGAGGAGGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.30	3	0	2	0	0	0	1	0	0	0	0

droPer2

CGGAGGGCGCGGCAGACGG-GCTGGCG-GTGATCTCCAGCGATGAGGAGGAGGCGGAGTGCC----------CACCAGCGCCGAAGGC-GGCTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGGCAGGAGAGG---CTGC----GACGAGCCGAGGTGG------------------A---GGAGGAAGAGCTCTGGCAA---CCACCC---------CCTGAACACGTCGAGTCCGAGGAGGAGCCGCGG-CCGCAGGCCCCACCGTCACCGGGGG------------------------C---------------AG----------AGGAAG------------AGCTGTTCCAGC-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................TCCAGCGATGAGGAGGAGGCGG................................................................................................................................................................................................................................................................................................................................................................................................	22	15	1.20	18	0	18	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.87	13	0	13	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.73	11	0	11	0	0	0	0
..................................TCCAGCGATGAGGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.53	8	0	7	1	0	0	0
........................................................................................................................................................................................................................................................................................CCC---------CCTGAACACGTCGAGTCCGAG...............................................................................................................................	24	8	0.38	3	2	1	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAG.....................................................................................................................................................................................................................................................	23	15	0.33	5	0	4	1	0	0	0
..................................................................................................................................................................................................................................................................GGAAGAGCTCTGGCAA---CCACC..............................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGA......................................................................................................................................................................................................................................................	22	16	0.31	5	0	5	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.27	4	0	4	0	0	0	0
.........................................................................................................................................................................................................................................................................................CC---------CCTGAACACGTCGAGTCCGAGG..............................................................................................................................	24	8	0.25	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................GAAGAGCTCTGGCAA---CCACCC---------....................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGG.......................................................................................................................................................................................................................................................	21	16	0.25	4	0	2	1	0	0	1
...................................................................................................................................................................................................................................................................GAAGAGCTCTGGCAA---CCACCC---------C...................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
..................................TCCAGCGATGAGGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.20	3	0	3	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGG..................................................................................................................................................................................................................................................	26	15	0.20	3	0	2	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................C---------------AG----------AGGAAG------------AGCTGTTCCAGC-------	21	6	0.17	1	0	1	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATGA...........................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.15	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TCACCGGGGG------------------------C---------------AG----------AGGAAG------------AGCT...............	23	7	0.14	1	0	1	0	0	0	0
..........................................................TGCC----------CACCAGCGCCGAAGGC-GGCTCG.........................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0
.............................TGATCTCCAGCGATGAGGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.14	2	0	2	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGCGGAG..............................................................................................................................................................................................................................................................................................................................................................................................	24	15	0.13	2	0	2	0	0	0	0
...................................CCAGCGATGAGGAGGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................CC---------CCTGAACACGTCGAGTCCGAGGA.............................................................................................................................	25	8	0.13	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................CACCC---------CCTGAACACGTCGAGT....................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGAACACGTCGAGTCCGAGGAGGAGC........................................................................................................................	26	10	0.10	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................CCTGAACACGTCGAGTCCGAGGAG............................................................................................................................	24	10	0.10	1	0	1	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAG........................................................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAGGCCCCACCGTCACCGGGGG------------------------C---------------AG----------A....................................	26	13	0.08	1	0	1	0	0	0	0
...........................................................................................CTCGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGA.........................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATG............................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
.....................CTGGCG-GTGATCTCCAGCGATG............................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
......................TGGCG-GTGATCTCCAGCGATGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
.............................................................................................................................................................................................GAGGAGTGGCAGGAGAGG---......................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0
.................................................................................................T------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGG..................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0
..................................................................................................................TCGC------------------------------------------------------------------CCGAAGAGGAGTGGCAGGA.............................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0
................................TCTCCAGCGATGAGGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0
..............................................................................................................CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGGCA................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
..............................................................................................................CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGG..................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0
................................TCTCCAGCGATGAGGAGGAGGCG.................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGT....................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0
..................................TCCAGCGATGAGGAGGAGGCTT................................................................................................................................................................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGAGTGGC.................................................................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0
...................................CCAGCGATGAGGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0
.................................CTCCAGCGATGAGGAGGAGGCGT................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0
...................................CCAGCGATGAGGAGGAGGCGG................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0
..............................................................................................GAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAG........................................................................................................................................................................................................................................................	20	16	0.06	1	0	1	0	0	0	0
...............................................................................................AGT------------CCAGTCGC------------------------------------------------------------------CCGAAGAGGA......................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0
.............................................................................................CGAGT------------CCAGTCGC------------------------------------------------------------------CCGAAGT.........................................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0
..................................TCCAGCGATGAGGAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droWil2

TGGATGCGACGGCAGCGGCGGCGGGTACAGCAGTGGCAGTGGCGGCGGGT-----------CCAGCAGTGGCAGCGGGTGCA-GCAGT-GGCAGCGGC------GGCGGGT------------------------ACAGCAG----------T----------------------------GGCAGCGGGTACAGCAGTGGCAGCGGC---GGCG-GGTACA---------GC------------------A---GTGGCAGCGGTGGTGGGTACAGCAGTGG----CAGTG---------------------------------GCGGCGGGT-------CCAGCAGTGGCAGCGGGT---------GCAGCAGTGGC------------AG------CGG------C------------GGCGGGTACAGC-------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................CGGTGGTGGGTACAGCAGTGG----CAGT.....................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
.......................................................................................T-GGCAGCGGC------GGCGGGT------------------------ACAG.............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
.GGATGCGACGGCAGCGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................GTACAGCAGTGG----CAGTG---------------------------------GCGGC..............................................................................................................	22	20	0.05	1	0	0	0	1	0
..........................ACAGCAGTGGCAGTGGCGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.............................................CGGGT-----------CCAGCAGTGGCAGCGG...........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................CAGTGGCAGCGGGTGCA-G....................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................GTACAGCAGTGG----CAGTG---------------------------------GCG................................................................................................................	20	20	0.05	1	0	0	0	1	0
........................GTACAGCAGTGGCAGTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
........................GTACAGCAGTGGCAGTGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
........................................................................................................................................................T----------------------------GGCAGCGGGTACAGCAGTGG...............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
......CGACGGCAGCGGCGGCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................GTACA---------GC------------------A---GTGGCAGCGGTGG............................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................TACAGCAGTGGCAGCGGC---GGCG-GGT.............................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GGGT-------CCAGCAGTGGCAGCGG...................................................................................	20	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GGT-------CCAGCAGTGGCAGCGGGT---------........................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CGGGT-------CCAGCAGTGGCAGCGG...................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................ACAGCAGTGG----CAGTG---------------------------------GCGGCG.............................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................GTACAGCAGTGG----CAGTG---------------------------------GCGG...............................................................................................................	21	20	0.05	1	0	0	0	1	0
.....................CGGGTACAGCAGTGGCAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GGGT-------CCAGCAGTGGCAGCGGG..................................................................................	21	20	0.05	1	0	1	0	0	0

droVir3

CCAAAGCCTCTGCTGTCCT-CCAAATATGAGGCGCTTAGCGACGAAGATTAGTTGTGAC-------------TGCAGGCGTCGTCGTCCGGCATG-----CGCAG-----TCTGACGGCAGCAGCGACGGCGCCTCCAGCAG----------CCCATCCACAT----------------------------------------------------------------------------------------------------AACGCAGCCAACGTCTATC-------------------------------------------------------------AACATCCGCAG---------------------CAGC------------AGCATCACCAG------C------------AGCAGCAGCAGC-------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................GATTAGTTGTGAC-------------TGCAGGCGTCGT....................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0
..........................ATGAGGCGCTTAGCGACGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATATGAGGCGCTTAGCGACGAATT........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GTCTATC-------------------------------------------------------------AACATCCGCAG---------------------CAGC------------.................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GCCAACGTCTATC-------------------------------------------------------------AACATCCGC........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CGTCCGGCATG-----CGCAG-----TCTGACGGC.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCAGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CGAAGATTAGTTGTGAC-------------T...............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TATC-------------------------------------------------------------AACATCCGCAG---------------------CAGC------------A................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CGTCCGGCATG-----CGCAG-----TCTGA.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................CCTCCAGCAG----------CCCATCCACAT----------------------------------------------------------------------------------------------------AACGCAGC.........................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ATG-----CGCAG-----TCTGACGGC.................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................GTTGTGAC-------------TGCAGGCGTCGT....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTAGTTGTGAC-------------TGCAGGC.........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AGCAGCGACGGCGCCTCC...............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGCATG-----CGCAG-----TCTGAC....................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CGTCGTCGTCCGGCATG-----CGCAG-----TCT.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................AGGCGTCGTCGTCCGGCATG-----CGCA................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................ATC-------------------------------------------------------------AACATCCGCAG---------------------CAGC------------A................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTAGTTGTGAC-------------TGCAGGCGTCGT....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GTCCT-CCAAATATGAGGCGCTTAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTAGCGACGAAGATTAGTTGTGAC-------------................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AGTTGTGAC-------------TGCAGGCGTCGT....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................CTATC-------------------------------------------------------------AACATCCGCAG---------------------CAGC------------.................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GACGGCAGCAGCGACGGCGC...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GATTAGTTGTGAC-------------TGCAGGCGTC......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................G-----CGCAG-----TCTGACGGCAGCAGCGACGGC.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTAGCGACGAAGATTAGTTGT................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GAAGATTAGTTGTGAC-------------TGCAGGC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CAAATATGAGGCGCTTAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AGCATCACCAG------C------------AGCAGCAGC..........	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GC------------AGCATCACCAG------C------------AGCAGCAGCA.........	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CAG---------------------CAGC------------AGCATCACCAG------C------------AGCAGC.............	25	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................C------------AGCATCACCAG------C------------AGCAGCAGCA.........	23	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AGCATCACCAG------C------------AGCAGCAGCA.........	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................C------------AGCATCACCAG------C------------AGCAGCAG...........	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AGC------------AGCATCACCAG------C------------AGCA...............	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CATCACCAG------C------------AGCAGCAGCA.........	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................C------------AGCATCACCAG------C------------AGCAG..............	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCAAAGCCTCTGCTCTCAT-CGAAGTACGAAGCGCTCAGCGACGAAGATTAGTTGTGAC-------------TGCAGGCGTCGTCGTCCGGCATG-----CGCAG-----TCTGACGGCAGCAGCGACGACGCCTCCAGCAG----------CCAATCAACACAGCGCAGCC----------------------------------------------------------------------------------------------AATGTCTACCAGCACCAGCAGCACCA---------------------------------GCAGCACCA-------ACAGCA---------------------CCAACAGCAGC------------AG------CAG------C------------AGCCGCAGCCGC-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................CGTCGTCCGGCATG-----CGCAG-----TCTGAC....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CAGCA---------------------CCAACAGCAGC------------AG------CAG------C------------AGCCGC.............	28	1	1.00	1	1	0	0	0	0	0
..................................................................................GTCGTCCGGCATG-----CGCAG-----TCTGACGGC.................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................GCTCAGCGACGAAGATTAGTT..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................CAGCAGCGACGACGCCTCC...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................ACAGCGCAGCC----------------------------------------------------------------------------------------------AATGTCTACCAGCACC..............................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................CGGCAGCAGCGACGACGCC..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................................GAAGATTAGTTGTGAC-------------TGCAGGCGTCGT....................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..................................................................................GTCGTCCGGCATG-----CGCAG-----TCTGA.....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTACCAGCACCAGCAGCACCA---------------------------------...................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
..................................................AGTTGTGAC-------------TGCAGGCGT.......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................ATG-----CGCAG-----TCTGACGGCAGCAGCGACGAC.....................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................CCAGCAG----------CCAATCAACACAGCGC................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................GCGACGACGCCTCCAGCAG----------CCA.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................AATGTCTACCAGCACCAGCA..........................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................CA---------------------------------GCAGCACCA-------ACAGCA---------------------CCAACAGCAG..............................................................	27	6	0.17	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGC------------AG------CAG------C------------AGCCGCAGC..........	25	11	0.09	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CACCA-------ACAGCA---------------------CCAACAGC................................................................	19	14	0.07	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................ACCA-------ACAGCA---------------------CCAACAGCA...............................................................	19	14	0.07	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------AG------CAG------C------------AGCCGCAGCCGC-------	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------AG------CAG------C------------AGCCGCAGCC.........	21	20	0.05	1	0	0	0	0	1	0

droGri2

CCAAAGCCGCTGCTGTCCT-CCAAATATGAGGCGCTCAGCGACGAAGATTAGTTGTGAC-------------TGCAGGCGTCGTCGTCCGGCATG-----CGAAC-----TCTGACGGCAGCAGCGACGGCGCCTCCAGCAG----------CTAATTCACACAGCGCAGCCAACGCC-----TACCAACAGCAGCAGCAGCAGCAG---CAG--------CAGAT-------------------------------------TACGTGGACTA-----GTGCCGGCTATCG---------------------------------ACGTCATCA-------TCTGCC---------------------ACAGTCGCAGC------------CG------CAG------C------------CGCAGCCAACGT------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................GCAGCAGCGACGGCGCCT.................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.....................................................TGTGAC-------------TGCAGGCGTCGTC...................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
CCAAAGCCGCTGCTGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
........................................................................................................................GCAGCGACGGCGCCTCCAGCAG----------CTAAT...........................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
............................................................................................................................................................................................ACAGCAGCAGCAGCAGCAG---CA....................................................................................................................................................................................................................................	21	20	0.20	4	4	0

dan_1349

scaffold_13117:3498687-3498836 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-52.0	-51.9	-51.7