ID:

dan_1343

 Coordinate:

scaffold_13117:3447533-3447683 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.1 0.0 0.0

Flybase annnotation

CDS [Dana\GF21382-cds]; exon [dana_GLEANR_4585:13]; intron [Dana\GF21382-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGAAACAAAATAAAAATATAAATTCAAATAAAAACTTGAAAATCACAAATTAAGAATATACTGAAAATTAAAACTTTGACCCACTCTTTGCCCCCCCGCCCTCAACCCCCCTCACATCAAAAAAAAAAAAAAAAAAAAAAAACCCAACCAAAAAATACCAAAAAAAAAAACAAACACAATCCTGATTCTCCGATCTTTAGCTGAACGATACGACCAGTCCGGATAGTCCATCGCTAGAATTTGTACCGGA
**************************************************........................................((......)).....................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 M044
female body
....................................................................................................................................AAAAAAAAAAACCCAACCAA................................................................................................... 20 0 1 2.00 2 2 0 0 0
...................................................................................................................................AAAAAAAAACAACCCAACCA.................................................................................................... 20 1 5 1.20 6 5 1 0 0
.....................................................................................................................................AAAAAAAAAACCCAACCAAA.................................................................................................. 20 0 1 1.00 1 1 0 0 0
......................................................................................................................................AAAAACAAACCCAACCAAAAA................................................................................................ 21 1 1 1.00 1 1 0 0 0
...............................................................................................................................AAAAGAAAAAAAAAAACCCAACC..................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................................................AAAAAAAGACCCAACCAAAA................................................................................................. 20 1 1 1.00 1 1 0 0 0
....................................................................................................................................AAGAAAAGAAACCCAACCAAAA................................................................................................. 22 2 1 1.00 1 1 0 0 0
.................................................................................................................................AAAAAGACAAAAAACCCAACCAAAA................................................................................................. 25 2 1 1.00 1 1 0 0 0
..................................................................................................................................AAAAAAAAAACAACCCAACCAAAAAA............................................................................................... 26 1 1 1.00 1 0 1 0 0
....................................................................................................................................AAAAGAAAAAACCCAACCAAAAA................................................................................................ 23 1 1 1.00 1 1 0 0 0
.......................................................................................................................................AAAAAAAACCCAACGAAAAAA............................................................................................... 21 1 1 1.00 1 0 1 0 0
....................................................................................................................................AAAAAAAAAAACCCAACCA.................................................................................................... 19 0 1 1.00 1 1 0 0 0
..................................................................................................................................AAAAAAAAAAAAGCCCAACCA.................................................................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................................................................................AAAAAAAAGTAAAAAAAAAAACCCAACCA.................................................................................................... 29 2 1 1.00 1 1 0 0 0
...................................................................................................................................AAAAAAAAAAAACCCAACCA.................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................AAAACAAACCCAACCAAAAAA............................................................................................... 21 1 1 1.00 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAAAGACCCAACCA.................................................................................................... 22 1 1 1.00 1 1 0 0 0
.......................................................................................................................AAAAAAAAAAAAAAAAACAACAAACCCAACAAAAAA................................................................................................ 36 3 1 1.00 1 0 0 1 0
..................................................................................................................................AAAAAAAAAGACACCCAACCAAAA................................................................................................. 24 2 1 1.00 1 0 1 0 0
........................................................................................................................AAAAAAAAAAAACAAAAAAAAAACCAAACCACAAAA............................................................................................... 36 3 1 1.00 1 0 0 1 0
..................................................................................................................................AAAAAAAAAACAACCCAACCA.................................................................................................... 21 1 4 1.00 4 4 0 0 0
..................................................................................................................................GAAAGAAAAAAAACCCAACCAA................................................................................................... 22 2 1 1.00 1 1 0 0 0
.......................................................................................................................AAAAAAAAAAAAAAAATAAAGAAAACCAACCAAAAA................................................................................................ 36 3 1 1.00 1 0 1 0 0
...................................................................................................................................AAAAAAAAAACACCCAACCA.................................................................................................... 20 1 6 0.67 4 4 0 0 0
....................................................................................................................................AAAAAAAACAACCCAACCA.................................................................................................... 19 1 6 0.50 3 3 0 0 0
...................................................................................................................................AAAAAAAAAAAACCCAACCAC................................................................................................... 21 1 2 0.50 1 1 0 0 0
..............................................................................................................................GAAAAACAAAAAAAAGACCCAACCA.................................................................................................... 25 3 2 0.50 1 1 0 0 0
.................................................................................................................................AAACAAAAAAAAAACCCAACC..................................................................................................... 21 1 2 0.50 1 1 0 0 0
...................................................................................................................................AAATAAAAAAAACCCAACCA.................................................................................................... 20 1 2 0.50 1 1 0 0 0
....................................................................................................................................AAAAAAAAAAACCCTACCAAAAAA............................................................................................... 24 1 2 0.50 1 1 0 0 0
..............................................................................................................................AATAAAACAAAATAAAACCCAACCAAAAA................................................................................................ 29 3 2 0.50 1 1 0 0 0
..............................................................................................................................AAACAAAAAAAACAAAACCCAACCAA................................................................................................... 26 2 2 0.50 1 1 0 0 0
............................................................................................................................AAAAAAACAAAAAAAACAACCCAACC..................................................................................................... 26 2 2 0.50 1 1 0 0 0
....................................................................................................................................AAAAAAAAAAACCCAACCAC................................................................................................... 20 1 2 0.50 1 1 0 0 0
.....................................................................................................................................AAAAAAAAACCCCAACCAAAAA................................................................................................ 22 1 2 0.50 1 1 0 0 0
.....................................................................................................................................AAAGAAAACACCCAACCAAAAAACA............................................................................................. 25 3 2 0.50 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAACAACCCGACCAAAA................................................................................................. 25 2 2 0.50 1 1 0 0 0
......................................................................................................................................AAAAAAAAACCGAACCAACAAACACC........................................................................................... 26 3 2 0.50 1 1 0 0 0
.....................................................................................................................................AAAAAACAAACCCAACCAAGAA................................................................................................ 22 2 2 0.50 1 1 0 0 0
...............................................................................................................................AAAAAAAGAAAAAGAACCCAACC..................................................................................................... 23 2 2 0.50 1 1 0 0 0
...................................................................................................................................AAAAAAAAACAACCCCACCAAAA................................................................................................. 23 2 2 0.50 1 1 0 0 0
..........................................................................................................................AAAAAAAAAAAAAAAAAAAAATCCAACGAAAAAACA............................................................................................. 36 3 2 0.50 1 0 0 1 0
.................................................................................................................................AAAAAAAAACAAAACCCAACCA.................................................................................................... 22 1 2 0.50 1 1 0 0 0
..............................................................................................................................................................CCAAACAAAAAAACAAACAC......................................................................... 20 1 2 0.50 1 1 0 0 0
...................................................................................................................................AAGAAAAAAAAACCCAACCA.................................................................................................... 20 1 2 0.50 1 1 0 0 0
...............................................................................................................................AAAAACAAAAAAACAACCCAACCA.................................................................................................... 24 2 2 0.50 1 1 0 0 0
.........................................................................................................................AAAAACAAAAAAAAAAAAAAAAACCGACCAAAAAA............................................................................................... 35 3 2 0.50 1 0 1 0 0
..................................................................................................................................AAAAAAAGAAACACCCAACCAAA.................................................................................................. 23 2 2 0.50 1 1 0 0 0
....................................................................................................................................AAAAAAAAACACCCAACCAAAAA................................................................................................ 23 1 2 0.50 1 1 0 0 0
...........................................................................................................................AAAGAAAAAAAAAACAAAACCCCAACCA.................................................................................................... 28 3 2 0.50 1 1 0 0 0
..................................................................................................................................AAAAAAGAAAAAACCCAACC..................................................................................................... 20 1 2 0.50 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAAACACCCAACC..................................................................................................... 21 1 7 0.43 3 3 0 0 0
...................................................................................................................................AAAAAAAAAAACCCCAACCA.................................................................................................... 20 1 7 0.43 3 3 0 0 0
.......................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA............................................................................................................. 23 0 20 0.40 8 0 0 0 8
..................................................................................................................................AAAAAAAAAACAACCCAACC..................................................................................................... 20 1 8 0.38 3 3 0 0 0
.....................................................................................................................................AAAAAAACAACCCAACCAA................................................................................................... 19 1 8 0.38 3 3 0 0 0
...................................................................................................................................CAAAAAAATAAACCCAACCAAAA................................................................................................. 23 2 3 0.33 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAAAAACCCAACCT.................................................................................................... 22 1 3 0.33 1 1 0 0 0
..................................................................................................................................AAAAAAAAAACAACCCTACCAAA.................................................................................................. 23 2 3 0.33 1 1 0 0 0
...................................................................................................................CATCAAAAAAGAAAAAAAAAAAAAA............................................................................................................... 25 1 3 0.33 1 1 0 0 0
.......................................................................................................................................AAAAAAACCCCAACCAAAAA................................................................................................ 20 1 3 0.33 1 1 0 0 0
......................................................................................................................................AAAGAAACACCCAACCAAAAAA............................................................................................... 22 2 3 0.33 1 0 1 0 0
..................................................................................................................................AAAAAAAAAAAACCCCAACCA.................................................................................................... 21 1 3 0.33 1 1 0 0 0
.....................................................................................................................................AAAAAAAAAACCCCACCAAAA................................................................................................. 21 1 3 0.33 1 1 0 0 0
.....................................................................................................................................AAAAAAAAAACCCAACCCAAAAAAAC............................................................................................ 26 2 3 0.33 1 1 0 0 0
...................................................................................................................................AAAAAACAAAAACCCAACCA.................................................................................................... 20 1 3 0.33 1 1 0 0 0
.......................................................................................................................................AAAAAAAACCCAACCAGAA................................................................................................. 19 1 3 0.33 1 1 0 0 0
........................................................................................................................................AAAAACACCCAACCAAAAAA............................................................................................... 20 1 3 0.33 1 0 1 0 0
.....................................................................................................................................AAAAAAAGCACCCAACCAAAAAA............................................................................................... 23 2 3 0.33 1 1 0 0 0
...................................................................................................................................AAAACAAAAAAACCCAACCA.................................................................................................... 20 1 3 0.33 1 1 0 0 0
.........................................................................................................................................AAAAAACCCAACCAAAAAAA.............................................................................................. 20 1 9 0.33 3 3 0 0 0
......................................................................................................................................GAAAGAAAACCCAACCAAAAAATC............................................................................................. 24 3 3 0.33 1 1 0 0 0
.....................................................................................................................................AAAAAAACAACCCAACCA.................................................................................................... 18 1 10 0.30 3 3 0 0 0
.....................................................................................................................................AAAAGAACAACCCAACCAAAAA................................................................................................ 22 2 4 0.25 1 1 0 0 0
...............................................................................................................................AAACAAAAAAAGAACACCCAACCAA................................................................................................... 25 3 4 0.25 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAAAAACCCTACC..................................................................................................... 21 1 4 0.25 1 1 0 0 0
........................................................................................................................................AAAACAACCCAACCAAAAA................................................................................................ 19 1 4 0.25 1 1 0 0 0
....................................................................................................................................AGAAAAAAAACCCCAACCAAAAAA............................................................................................... 24 2 4 0.25 1 1 0 0 0
.......................................................................................................................................AAAAACAACCCAACCAAAA................................................................................................. 19 1 4 0.25 1 1 0 0 0
....................................................................................................................................AAAAAAACAACCCCAACCAAAA................................................................................................. 22 2 4 0.25 1 1 0 0 0
.....................................................................................................................................ATAAAAACAACCCAACCAAAA................................................................................................. 21 2 4 0.25 1 1 0 0 0
.................................................................................................................................AAAAGAAAAAAAAACCCAACCAC................................................................................................... 23 2 4 0.25 1 1 0 0 0
...............................AAAACTTGAACCTCACAAA......................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0
........................................................................................................................................................AAAATACCAAAAAAAAAAAC............................................................................... 20 0 4 0.25 1 1 0 0 0
.....................................................................................................................................AAAAAAAAACCCCAACCAAA.................................................................................................. 20 1 4 0.25 1 1 0 0 0
................................................................................................................................AAAAAAAAAAAAACACCCAACC..................................................................................................... 22 1 4 0.25 1 1 0 0 0
...................................................................................................................................AAACAAAAAAAACCCAACC..................................................................................................... 19 1 4 0.25 1 1 0 0 0
........................................................................................................................................................AAAATACCAAAGAAAAAAACA.............................................................................. 21 1 4 0.25 1 1 0 0 0
..................................................................................................................................AAAAAGAAAACAACCCAACCA.................................................................................................... 21 2 8 0.25 2 2 0 0 0
.....................................................................................................................................AAAAAGAACACCCAACCAAAA................................................................................................. 21 2 4 0.25 1 1 0 0 0
..........................................................................................................................AAAAAAAAAAAAAAAAAAAAACCCA........................................................................................................ 25 0 4 0.25 1 1 0 0 0
.....................................................................................................................................AACAAAAAACCCCAACCAAAAAA............................................................................................... 23 2 4 0.25 1 1 0 0 0
...........................................................................................................................AAAAAACAAAAAAAAAAAAACCCA........................................................................................................ 24 1 9 0.22 2 2 0 0 0
...................................................................................................................................AAAAAAAAACAACCCAACC..................................................................................................... 19 1 9 0.22 2 2 0 0 0
......................................................................................................................................AAAAAAAACCCCTACCAAAAAA............................................................................................... 22 2 5 0.20 1 1 0 0 0
........................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACCAAACCACAACA............................................................................................... 36 3 5 0.20 1 0 0 1 0
....................................................................................................................................AAAAAAAAACACCCAACCAA................................................................................................... 20 1 5 0.20 1 1 0 0 0
...................................................................................................................................ATAAAAAAAAAACCCAACCA.................................................................................................... 20 1 5 0.20 1 1 0 0 0
..................................................................................................................................................AACCAAAAACTACCACAAAAAAA.................................................................................. 23 2 5 0.20 1 1 0 0 0
.............................................................................................................................AAAAAAGAAAAAAAAAAGCCCCACCA.................................................................................................... 26 3 5 0.20 1 1 0 0 0
.....................................................................................................................................AAAAAAAAACCCCAACCAAAAAAAA............................................................................................. 25 2 5 0.20 1 1 0 0 0
....................................................................................................................................AAAAAAAAACACCCAACCA.................................................................................................... 19 1 15 0.20 3 3 0 0 0
.....................................................................................................................................AAAAAACAAACCCAACCCAAAAA............................................................................................... 23 2 5 0.20 1 1 0 0 0
.....................................................................................................................................AAAAAAAAAACCCTACCAAA.................................................................................................. 20 1 5 0.20 1 1 0 0 0
.....................................................................................................................................AGAGAAAAAACCCAACCAAAA................................................................................................. 21 2 5 0.20 1 0 1 0 0
...............................................................................................................................AAAAACAAAAAAAAAACCCTACCA.................................................................................................... 24 2 5 0.20 1 1 0 0 0
.................................................................................................................................AAAAAACAAAACAACCCAACCAA................................................................................................... 23 2 5 0.20 1 1 0 0 0
................................................................................................................................AAAAAAGAACAAAAACCCAACC..................................................................................................... 22 2 5 0.20 1 1 0 0 0
....................................................................................................................................AAAAAAAAGAACCCAACCA.................................................................................................... 19 1 5 0.20 1 1 0 0 0
.....................................................................................................................................AAAAAAACAACCCAACCAAA.................................................................................................. 20 1 5 0.20 1 1 0 0 0
...................................................................................................................................AAAAAAAGACAACCCACCCAAAAAA............................................................................................... 25 3 5 0.20 1 1 0 0 0
.................................................................................................................................AATAAAAAAAAAACCCCAACCA.................................................................................................... 22 2 5 0.20 1 1 0 0 0
..................................................................................................................................................AACCAAAAAAAACCAAAAAAAAAAA................................................................................ 25 1 5 0.20 1 1 0 0 0
................................................................................................................................AAAAAAAAACAACAACCCAACCA.................................................................................................... 23 2 6 0.17 1 1 0 0 0
...................................................................................................................................AAAAAAAAAAGACCCAACC..................................................................................................... 19 1 6 0.17 1 1 0 0 0
..................................................................................................................................AAAAAAAAAAAAAGCCAACCA.................................................................................................... 21 1 6 0.17 1 1 0 0 0
....................................................................................................................................AAAAAAAAAAACCCACCCAA................................................................................................... 20 1 6 0.17 1 1 0 0 0
......................................................................................................................................AAAAAAAAACCCAACCACA.................................................................................................. 19 1 6 0.17 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAGAAACTCAACCAAA.................................................................................................. 24 2 6 0.17 1 1 0 0 0
............................................................................................................................AAAACAAACAAAAAAACAACCCAACC..................................................................................................... 26 3 6 0.17 1 1 0 0 0
................................................................................................................................GAAAAAAAAAAAAACCCCAACCA.................................................................................................... 23 2 6 0.17 1 1 0 0 0
......................................................................................................................................AAAAACAAACCCAACCAAA.................................................................................................. 19 1 6 0.17 1 1 0 0 0
........................................................................................................................................AAAAAAACCCAACCAAGAA................................................................................................ 19 1 6 0.17 1 0 1 0 0
...................................................................................................................................AAAAAAAACAAACCCAACC..................................................................................................... 19 1 6 0.17 1 1 0 0 0
..................................................................................................................................AAAAAAAAAAGAACGCAACCAA................................................................................................... 22 2 6 0.17 1 1 0 0 0
..................................................................................................................................AAAGAAAAAACAACCCAACCA.................................................................................................... 21 2 6 0.17 1 1 0 0 0
....................................................................................................................................AAATAAAACAACCCAACCA.................................................................................................... 19 2 19 0.16 3 3 0 0 0
.................................................................................................................................AAAAAACAACAAAACCCAACC..................................................................................................... 21 2 13 0.15 2 2 0 0 0
...................................................................................................................................AAAAAAAAAAACCCCAACC..................................................................................................... 19 1 20 0.15 3 3 0 0 0
................................................................................................................................AAAAAAAAAAAAAAACCC......................................................................................................... 18 0 20 0.15 3 3 0 0 0
................................................................................................................................AAAAAAAAAAAAAAACCCA........................................................................................................ 19 0 20 0.15 3 3 0 0 0
..........................................................................................................................AAAAAAAAAAAAAAAAAAAAACC.......................................................................................................... 23 0 20 0.15 3 3 0 0 0
...............................................................................................................................AAAAGAAAAAAAAAAACCC......................................................................................................... 19 1 20 0.15 3 3 0 0 0
....................................................................................................................................AAAAAAGAAAACCCAACCA.................................................................................................... 19 1 7 0.14 1 1 0 0 0
..............................................................................................................................GAGAAAAAAAAAAACAACCCAACCA.................................................................................................... 25 3 7 0.14 1 1 0 0 0
........................................................................................................................................AAAAGAACCCAACCAAAGAA............................................................................................... 20 2 7 0.14 1 1 0 0 0
.............................................................................................................................AAAAAACCAAAAAAAAAACCCCACCA.................................................................................................... 26 3 7 0.14 1 0 1 0 0
......................................................................................................................................AAAAAGAAACCCAACCAAAAAACC............................................................................................. 24 3 7 0.14 1 1 0 0 0
...........................................................................................................................AAAAAAAAGAAACAAAAAAACGCAACC..................................................................................................... 27 3 7 0.14 1 1 0 0 0
..................................................................................................................................................................ATAAAAAAACAAACACAATCG.................................................................... 21 2 7 0.14 1 1 0 0 0
...........................................................................................................................AAAACAAAAAATTAAAAAAACCCAAC...................................................................................................... 26 3 7 0.14 1 1 0 0 0
...................................................................................................................................AAAAAAAAACAACCCTACCA.................................................................................................... 20 2 15 0.13 2 2 0 0 0
.............................................................................................................................ACAAAACAAAAAAAAAAACCCTACCA.................................................................................................... 26 3 8 0.13 1 1 0 0 0
.................................................................................................................................AAAAAAAAAGAACACCCAACCA.................................................................................................... 22 2 8 0.13 1 1 0 0 0
........................................................................................................................................................AAAATACCAAAAAAACAAACGA............................................................................. 22 2 8 0.13 1 1 0 0 0
..............................................................................................................................AAAAAACAAAAAACACACCCAACCA.................................................................................................... 25 3 8 0.13 1 1 0 0 0
..................................................................................................................................AAAAGAAAAACAACCCAACCA.................................................................................................... 21 2 8 0.13 1 1 0 0 0
.........................................................................................................................................AAAAAACCCAACCAAATA................................................................................................ 18 1 8 0.13 1 1 0 0 0
...................................................................................................................................AAAAAAGAACAACCCAACCAA................................................................................................... 21 2 8 0.13 1 1 0 0 0
.......................................................................................................................................AAAACACACCCAACCAAAAAA............................................................................................... 21 2 8 0.13 1 1 0 0 0
................................................................................................................................AAAAAAAAAGAAAAACCCAAC...................................................................................................... 21 1 8 0.13 1 1 0 0 0
....................................................................................................................................AAAAAACAAGACCCACCCAAAAAA............................................................................................... 24 3 8 0.13 1 1 0 0 0
.....................................................................................................................................AAAAAAAAAACCCAACCACCA................................................................................................. 21 2 16 0.13 2 2 0 0 0
..........................................................................................................................AAAACAAAAGAAAAAAAAAAACCCA........................................................................................................ 25 2 9 0.11 1 1 0 0 0
.....................................................................................................................................AGAAGGAAAACCCAACCAAAAAA............................................................................................... 23 3 9 0.11 1 1 0 0 0
................................................................................................................................AAACAAAAAAAACAACCCAACCA.................................................................................................... 23 2 9 0.11 1 1 0 0 0
....................................................................................................................................AAAAAAAAAAACCCAACCACCA................................................................................................. 22 2 9 0.11 1 1 0 0 0
..................................................................................................................................AAAAAAGAAAAACCCCAACCA.................................................................................................... 21 2 9 0.11 1 0 1 0 0
..............................................................................................................................AAATAAAGAGAAAAAAACCCAACC..................................................................................................... 24 3 9 0.11 1 1 0 0 0
....................................................................................................................................AAAATATAACACCCAACCAAAA................................................................................................. 22 3 9 0.11 1 1 0 0 0
...............................................................................................................................GAATAAAAAAAAAAAACCCCACCA.................................................................................................... 24 3 9 0.11 1 1 0 0 0
...............................................................................................................................AAAAATAAAAAATACACCCAACCA.................................................................................................... 24 3 9 0.11 1 1 0 0 0
.............................................................................................................................AAAAAAAAAAGAACACAACCCAACC..................................................................................................... 25 3 9 0.11 1 1 0 0 0
.....................................................................................................................................AAAAAAAACACCCAACCA.................................................................................................... 18 1 20 0.10 2 2 0 0 0
..................................................................................................................................AAAAAAAAAAAAACCCAAACA.................................................................................................... 21 1 20 0.10 2 2 0 0 0
.....................................................................................................................................AAAAAAACAACCCCACCAAGAAA............................................................................................... 23 3 10 0.10 1 1 0 0 0
......................................................................................................................................AAAAAGACACCCAACCAAAAA................................................................................................ 21 2 10 0.10 1 1 0 0 0
......................................................................................................................................AAAAAAAAACCCAACCACCA................................................................................................. 20 2 20 0.10 2 2 0 0 0
..........................................................................................................CCCACCCCACATCAAAAAA.............................................................................................................................. 19 2 10 0.10 1 1 0 0 0
...................................................................................................................................AAAAAACAACAACCCAACCA.................................................................................................... 20 2 20 0.10 2 2 0 0 0
...................................................................................................................................................................AAAAAAAACAAACACAAACC.................................................................... 20 1 10 0.10 1 1 0 0 0
....................................................................................................................................AAAATACAACACCCAACCAAAAA................................................................................................ 23 3 10 0.10 1 1 0 0 0
......................................................................................................................................AAAAAAAAACCCAACCACAAAAA.............................................................................................. 23 2 10 0.10 1 1 0 0 0
............................................................................................................................AAAAAAAAAAAAAAAAAAACCC......................................................................................................... 22 0 20 0.10 2 2 0 0 0
....................................................................................................................................AAAAAAAAAAACCCCACCA.................................................................................................... 19 1 10 0.10 1 1 0 0 0
...................................................................................................................................AAAAAAAGAACACCCAACC..................................................................................................... 19 2 20 0.10 2 2 0 0 0
...........................................................................................................................................................AGACCAAAAAAAAAAACAACC........................................................................... 21 2 20 0.10 2 2 0 0 0
....................................................................................................................................AAAAACAAAAACCCTACCA.................................................................................................... 19 2 20 0.10 2 2 0 0 0
......................................................................................................................................AAAAAAAAACCCAAACAAAA................................................................................................. 20 1 20 0.10 2 2 0 0 0
.................................................................................................................................................CAAACAAAAAATACCAAAA....................................................................................... 19 1 20 0.10 2 2 0 0 0
....................................................................................................................................AAATAAAAACACCCAACCA.................................................................................................... 19 2 20 0.10 2 2 0 0 0
.................................................................................................................................AAAAAAAAAAAACACCCCACCA.................................................................................................... 22 2 10 0.10 1 1 0 0 0
...............................................................................................................................AAAAAATACAAAACAACCCAACCA.................................................................................................... 24 3 10 0.10 1 1 0 0 0
.....................................................................................................................................AAAAAAACAACCCTACCA.................................................................................................... 18 2 20 0.10 2 2 0 0 0
...................................................................................................................................AAAACAAAACAACCCAACCA.................................................................................................... 20 2 20 0.10 2 2 0 0 0
.............................................................................................................................AAAAAAAAAAAAAAAAAACCCAACA..................................................................................................... 25 1 11 0.09 1 1 0 0 0
.................................................................................................................................AAAAGAAAAAACAACCCAACC..................................................................................................... 21 2 11 0.09 1 1 0 0 0
......................................................................................................................CAAAACAAAAAAAAAAAAAAAAAAACACAAACAAAA................................................................................................. 36 3 11 0.09 1 0 0 1 0
......................................................................................................................................AAAAAAAAACCGCACCAAAAAA............................................................................................... 22 2 11 0.09 1 1 0 0 0
..............................................................................................................................AATAAAGAAAAATAAAACCCAACC..................................................................................................... 24 3 11 0.09 1 1 0 0 0
.........................................................................................................................................AAAAAACCCACCCAAAACAAACC........................................................................................... 23 3 11 0.09 1 1 0 0 0
.........................................................................................................................AAAAACAAAAAAAACAAAAAAACCCA........................................................................................................ 26 2 11 0.09 1 1 0 0 0
...............................................................................................................................AAAAAAAAAAAAAAAAACCAACCA.................................................................................................... 24 1 11 0.09 1 1 0 0 0
........................................................................................................................AAAAAGAAAAAAAAAAAAAAAAACCC......................................................................................................... 26 1 11 0.09 1 1 0 0 0
...................................................................................................................................AAAAAAAAAAAAGCCAACCA.................................................................................................... 20 1 11 0.09 1 1 0 0 0
....................................................................................................................................AAAAAAAAAAACCTAACCA.................................................................................................... 19 1 11 0.09 1 1 0 0 0
................................................................................................................................AAAAAAAAAAAAAAACCCACCC..................................................................................................... 22 1 11 0.09 1 1 0 0 0
................................................................................................................................AAAAAAAAAGAAAATCCCAACCACA.................................................................................................. 25 3 11 0.09 1 1 0 0 0
.................................................................................................................................AATAAAAAGAAAAACCCAACC..................................................................................................... 21 2 11 0.09 1 1 0 0 0
....................................................................................................................................AAAAAAAAAAACCCTACCA.................................................................................................... 19 1 11 0.09 1 1 0 0 0
...................................................................................................................................AAAAAAAAAAAAACCAACCAAAAA................................................................................................ 24 1 11 0.09 1 1 0 0 0
..................................................................................................................ACATCAACAAAAAAAAAAAAAAAAA................................................................................................................ 25 1 11 0.09 1 1 0 0 0
...................................................................................................................................AAAGAAAAAACACCCAACCA.................................................................................................... 20 2 11 0.09 1 0 1 0 0
................................................................................................................................AACAATAAAAGAAAACCCAACCA.................................................................................................... 23 3 11 0.09 1 1 0 0 0
.....................................................................................................................................AAAAAACAAACCCAACCTAA.................................................................................................. 20 2 11 0.09 1 1 0 0 0
.......................................................................................................................AAAGAAGAAAACAAAAAAAAAAAACCCA........................................................................................................ 28 3 12 0.08 1 1 0 0 0
....................................................................................................................................AAAAAAAATAACCCACCCAA................................................................................................... 20 2 12 0.08 1 1 0 0 0
.......................................................................................................................AAAAAAAAAAATAAAAAAAAGAAACCC......................................................................................................... 27 2 12 0.08 1 1 0 0 0
..................................................................................................................................AAAAACAAAACAACCCAACCA.................................................................................................... 21 2 12 0.08 1 1 0 0 0
....................................................................................................................................AAAAAAAAAACCCCAACCAGA.................................................................................................. 21 2 12 0.08 1 1 0 0 0
....................................................................................................................................GAAACAAAAAACCCAACCAAA.................................................................................................. 21 2 12 0.08 1 1 0 0 0
....................................................................................................................................................................AAAAAAACGAACACAATACT................................................................... 20 2 12 0.08 1 1 0 0 0
.....................................................................................................................................AAAAAAAAAACCCAACAAAAAAA............................................................................................... 23 1 12 0.08 1 1 0 0 0
..................................................................................................................................AAAAAAAAAAAAAGCCAACC..................................................................................................... 20 1 13 0.08 1 1 0 0 0
.........................................................................................................................................AAAACACCCAACCAAAGAA............................................................................................... 19 2 13 0.08 1 1 0 0 0
................................................................................................................................AAAAAACAAAAAAAACCCAACCCAAC................................................................................................. 26 3 13 0.08 1 1 0 0 0
.................................................................................................................................AAAAAAAGAAAAGACCCTACCA.................................................................................................... 22 3 13 0.08 1 1 0 0 0
................................................................................................................................AAAAAAAGAAAAAAACCCAAC...................................................................................................... 21 1 13 0.08 1 1 0 0 0
..................................................................................................................................AAAAAAAAGAAAACCCAACC..................................................................................................... 20 1 13 0.08 1 1 0 0 0
.................................................................................................................................................................AAAAAAAAAGCAAACACAACCC.................................................................... 22 2 13 0.08 1 1 0 0 0
................................................................................................................................AAAAAAAAACCAAAACCCAACCA.................................................................................................... 23 2 13 0.08 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAAAAACCCCACC..................................................................................................... 21 1 13 0.08 1 1 0 0 0
.................................................................................................................................AAAAAAACAAAAACCCCAACCA.................................................................................................... 22 2 13 0.08 1 1 0 0 0
....................................................................................................................................AAAAACAAACACCCAACCAA................................................................................................... 20 2 13 0.08 1 1 0 0 0
..................................................................................................................................AAAAAAAAGAACACCCAACCA.................................................................................................... 21 2 13 0.08 1 1 0 0 0
................................................................................................................................AAAAAAAAAAAAACACCCAAC...................................................................................................... 21 1 13 0.08 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAAAAGCCCCACCA.................................................................................................... 22 2 13 0.08 1 1 0 0 0
...........................................................................................................................................................AAACCAAAATAAAAAACAAACACTA....................................................................... 25 3 13 0.08 1 1 0 0 0
...............................................................................................................................AAAAAAATAAAAACAACCCAAC...................................................................................................... 22 2 14 0.07 1 1 0 0 0
...................................................................................................................................AAAAAAAGAGCACCCAACCAAA.................................................................................................. 22 3 14 0.07 1 1 0 0 0
...................................................................................................................................AAAAAAAAACAACCCAACCCA................................................................................................... 21 2 14 0.07 1 1 0 0 0
......................................................................................................................................AAAAAGCAACCCAACCAAAA................................................................................................. 20 2 14 0.07 1 1 0 0 0
...................................................................................................................................AAACAAAGAAAACCCAACCA.................................................................................................... 20 2 14 0.07 1 1 0 0 0
................................................................................................................................AAACTAAAAAAACAACCCAACCA.................................................................................................... 23 3 14 0.07 1 1 0 0 0
...................................................................................................................................AAAAAAAAAAGACCCCACCA.................................................................................................... 20 2 15 0.07 1 1 0 0 0
......................................................................................................................................AAAAAAAAACCTAACCAAA.................................................................................................. 19 1 15 0.07 1 1 0 0 0
..................................................................................................................................AAAAAAAAAAAAACCCCACC..................................................................................................... 20 1 15 0.07 1 1 0 0 0
.................................................................................................................................AAAAAACAAAAAAACCCAACCACCA................................................................................................. 25 3 15 0.07 1 1 0 0 0
....................................................................................................................................AAAAAAGAGAACCCACCCAAAA................................................................................................. 22 3 15 0.07 1 1 0 0 0
................................................................................................................................AAACAAAAAAAACAACCCAACC..................................................................................................... 22 2 15 0.07 1 1 0 0 0
..................................................................................................................................AAAAAAAAAAAAACGCAACC..................................................................................................... 20 1 15 0.07 1 1 0 0 0
............................................................................................................................AAAAACAAAAAAAAAAAAACCCA........................................................................................................ 23 1 15 0.07 1 1 0 0 0
........................................................................................................................................AAAACAACCCAACCAAAAAAAA............................................................................................. 22 2 15 0.07 1 1 0 0 0
...................................................................................................................................AAAAAAGAACAACCCAACCA.................................................................................................... 20 2 15 0.07 1 1 0 0 0
.....................................................................................................................................AAAAAGAAAACCCAACCAAAGTA............................................................................................... 23 3 15 0.07 1 1 0 0 0
.......................................................................................................................GAAAAAAAACAAAAACAAAAAAAACCCA........................................................................................................ 28 3 16 0.06 1 1 0 0 0
..............................................................................................................................AAAAAAAAAAAAAAAAAACCAACC..................................................................................................... 24 1 16 0.06 1 1 0 0 0
.......................................................................................................................AAAAAAAACAGAAAAAAAAAAAAACCC......................................................................................................... 27 2 16 0.06 1 1 0 0 0
..............................................................................................................................AAAAAAAGAAAAAAAAACCCAA....................................................................................................... 22 1 16 0.06 1 1 0 0 0
....................................................................................................................................AAAAAAAACAACCCCACCAA................................................................................................... 20 2 16 0.06 1 1 0 0 0
......................................................................................................................................AAAAAACAAGCCAACCAAAAAA............................................................................................... 22 2 16 0.06 1 1 0 0 0
.....................................................................................................................................AAAAAAAAAACCAAACCAAAAAA............................................................................................... 23 1 16 0.06 1 1 0 0 0
...................................................................................................................................AAAAAATAATAACTCAACCAAAAA................................................................................................ 24 3 16 0.06 1 1 0 0 0
.................................................................................................................................AAAAAAAAAAACAACCCAACGA.................................................................................................... 22 2 17 0.06 1 1 0 0 0
.................................................................................................................................AACAAAAAAAAAAACCGAACCAA................................................................................................... 23 2 17 0.06 1 0 1 0 0
.........................................................................................................................................................AAATACCCAAATAAAACACAAAC........................................................................... 23 3 17 0.06 1 1 0 0 0
................................................................................................................................AAAAAAAACAAACACCCCAACCAA................................................................................................... 24 3 17 0.06 1 1 0 0 0
.................................................................................................................................AAAAAAAGAACAAACCCAACGAA................................................................................................... 23 3 17 0.06 1 0 1 0 0
...........................................................................................................................AAAAAAAAAAAAAAAAAAAACCC......................................................................................................... 23 0 17 0.06 1 1 0 0 0
..................................................................................................................................AAAAAAAAGAAGACCCCACCAAAA................................................................................................. 24 3 17 0.06 1 0 1 0 0
.................................................................................................................................AAAAATAAAAACAACCCAACC..................................................................................................... 21 2 17 0.06 1 1 0 0 0
...................................................................................................................................GAAAAGAAAAAACCCAACCA.................................................................................................... 20 2 17 0.06 1 1 0 0 0
..................................................................................................................................AAAAAGAAAAAAACCCAACC..................................................................................................... 20 1 17 0.06 1 1 0 0 0
...................................................................................................................................ACAAAAAAACAACCCAACCA.................................................................................................... 20 2 18 0.06 1 1 0 0 0
...................................................................................................................................AAAAAACAAAAACCCTACCA.................................................................................................... 20 2 18 0.06 1 1 0 0 0
...................................................................................................................................AAAAAAAACGAACCCAACCA.................................................................................................... 20 2 18 0.06 1 1 0 0 0
...........................................................................................................................................AAAACCCAACCAAAGAGCACC........................................................................................... 21 3 18 0.06 1 1 0 0 0
......................................................................................................................................AAAAGAACACCCAACCAAA.................................................................................................. 19 2 18 0.06 1 1 0 0 0
.......................................................................................................................................AAAAAAAACCCACCCAGAAA................................................................................................ 20 2 18 0.06 1 1 0 0 0
...................................................................................................................................AAAAAAAAGACACCCAACCA.................................................................................................... 20 2 18 0.06 1 1 0 0 0
................................................................................................................................AAAAAAAAACAAAAACCCTACC..................................................................................................... 22 2 18 0.06 1 1 0 0 0
.................................................................................................................................AAAACAAAAAACAACCCAACC..................................................................................................... 21 2 18 0.06 1 1 0 0 0
....................................................................................................................................AGAAAAAAACACCCAACCAA................................................................................................... 20 2 18 0.06 1 1 0 0 0
...................................................................................................................................AAAAAAAGAACACCCAACCA.................................................................................................... 20 2 18 0.06 1 0 1 0 0
................................................................................................................................AAAAAAAAAAAACATCCCACCCAA................................................................................................... 24 3 18 0.06 1 1 0 0 0
.....................................................................................................................................AAGAAAACAACCCAACCAA................................................................................................... 19 2 19 0.05 1 1 0 0 0
....................................................................................................................................AAAAGAAAACACCCAACCAA................................................................................................... 20 2 19 0.05 1 1 0 0 0
....................................................................................................................................................CCAAAAACTACCAATAAAAAAGA................................................................................ 23 3 19 0.05 1 1 0 0 0
...................................................................................................................................AAAAAAAAAAAACCCCACC..................................................................................................... 19 1 19 0.05 1 1 0 0 0
..........................................................................................................................AAAAAAAAAGAAAAAAAAAAACCC......................................................................................................... 24 1 19 0.05 1 1 0 0 0
................................................................................................................................AAAAAAAACAAACAACCCGACCA.................................................................................................... 23 3 19 0.05 1 1 0 0 0
.................................................................................................................................ATAAAAAAGAACAACCCAACCA.................................................................................................... 22 3 19 0.05 1 1 0 0 0
..............................................................................................................................AAAAAAAACAAAAACAACCCGACC..................................................................................................... 24 3 19 0.05 1 1 0 0 0
...............................................................................................................CTCACATAAAAAAAAAAAAA........................................................................................................................ 20 1 19 0.05 1 1 0 0 0
....................................................................................................................................AAAAAAAACAACCCGCCCAAAAA................................................................................................ 23 3 19 0.05 1 1 0 0 0
........................................................................................................................................AAAACAACCCCACCAAAAAA............................................................................................... 20 2 20 0.05 1 1 0 0 0
...................................................................................................................................TAAAAAAAAAAACGCAACCAAA.................................................................................................. 22 2 20 0.05 1 1 0 0 0
.........................................................................................................................................AAAAAACCCAACCAAACAAAA............................................................................................. 21 2 20 0.05 1 1 0 0 0
......................................................................................................................................AGAAACACACCCAACCAAAAAA............................................................................................... 22 3 20 0.05 1 1 0 0 0
...........................................................................................................................AAAAAAAAAAAACAAAAAAACCC......................................................................................................... 23 1 20 0.05 1 1 0 0 0
....................................................................................................................................AACAAAAAACACCCAACCAA................................................................................................... 20 2 20 0.05 1 1 0 0 0
....................................................................................................................................AAAAACAACAACCCAACCAA................................................................................................... 20 2 20 0.05 1 1 0 0 0
.................................................................................................................................AAATAAAAAAACAACCCTACCA.................................................................................................... 22 3 20 0.05 1 1 0 0 0
...................................................................................................................................AACAAAAAACAACCCAACCA.................................................................................................... 20 2 20 0.05 1 1 0 0 0
..........................................................................................................................GAAAAAAAAAAAAAAAAAAAACCC......................................................................................................... 24 1 20 0.05 1 0 0 1 0
..................................................................................................................ACATGAAAAAGAAAAAAAAAAAAAAAA.............................................................................................................. 27 2 20 0.05 1 1 0 0 0
.................................................................................................................................AAAGAAAAAAAACACCCCACCA.................................................................................................... 22 3 20 0.05 1 1 0 0 0
...................................................................................................................................CAAAAAAAAAAACCCCACCA.................................................................................................... 20 2 20 0.05 1 1 0 0 0
....................................................................................................................................AAAAAAACAAACCCCACCA.................................................................................................... 19 2 20 0.05 1 1 0 0 0
...........................................................................................................................................AAAACCCTACCAAAAAACA............................................................................................. 19 2 20 0.05 1 1 0 0 0
...............................................................................................................................AAAAAAAAATAAACAACCCAAC...................................................................................................... 22 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGCTTTGTTTTATTTTTATATTTAAGTTTATTTTTGAACTTTTAGTGTTTAATTCTTATATGACTTTTAATTTTGAAACTGGGTGAGAAACGGGGGGGCGGGAGTTGGGGGGAGTGTAGTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGGTTTTTTATGGTTTTTTTTTTTGTTTGTGTTAGGACTAAGAGGCTAGAAATCGACTTGCTATGCTGGTCAGGCCTATCAGGTAGCGATCTTAAACATGGCCT
**************************************************........................................((......)).....................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 M058
embryo
 V105
male body		 V039
embryo
....................................................................................................GGAGCTCGGGGGAGTATAGT................................................................................................................................... 20 3 3 0.67 2 2 0 0 0 0
....................................................................................................GGAGCTCGGGGTAGTGTAGT................................................................................................................................... 20 3 5 0.60 3 2 0 1 0 0
..............................................................................................................................................................................TGTCTTGGGACTAAGAGGC.......................................................... 19 2 2 0.50 1 0 1 0 0 0
........................................................................................................TCTGGGGGAGTGTAGTTT................................................................................................................................. 18 2 3 0.33 1 0 1 0 0 0
...................................................................................................GGGAGCTCGGGGGAGTATAGT................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
...........................................................................................................................................TTTTGGGTTGGTATTCTA.............................................................................................. 18 2 18 0.17 3 0 0 2 1 0
............................................................................................GGGGGGCGCGAGTTGGTG............................................................................................................................................. 18 2 7 0.14 1 1 0 0 0 0
.............................................................................................GGGGGCGGGTCTTGGGGGG........................................................................................................................................... 19 2 10 0.10 1 0 1 0 0 0
...........................................................ATGACTTGTATTTTTGAA.............................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 1
.....................................................................................................GAGCTCGGGGTAGTGTAGT................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
................................................................................................TCCGGGAGTTGGGGGGGGT........................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13117:3447483-3447733 + dan_1343 ACGAA----ACAA--------------AATA----AAAATATAAAT--TCAAATAAAAACTTGAAAATCACAAATTAAGAATATACTGAAAATTAAAACTTTGACCCACTCTTTGCCCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCC-TCAACCCC-------------CCTCACATCAAAAAAAAAAAAAAAAAAAAAAAACCCAACCAAA-AA--------ATACCAAAAAAAAAAACAAACACAATCCTGATTCTCCGATCTTTAGCTGAACGATACGACCAGTCCGGATAGTCCATCGCTAGAATTTGTACCGGA
droBip1 scf7180000395895:104708-104940 - ACAAA----AAAA--------------AATAAATTAAAAAAAAAATATTT--------ATATGAAAATCACAAATCAAGAAAATACTGAAAATTAAAACTTTGACCCACTCT------------------------------------------------------------------------------TGCCCGTTTTTT-----GCCCCCACCGAT--------------------------------------------------------------------------------------------------------------------------CCC-------------CCCCACATCTAA------------------AAACCCCGC---A-AAAAAATAAAATACCAAAAA--------AACACAATCCTGATTCTCCGATATTTAGCTGAACGATACGACGAGCCCGGATAGTCCGTCGCTAGAATTTGTACCGGA
droKik1 scf7180000302621:185812-185980 - ACTTA----AAAA--------------AAAAAACAACAAAAAAAAT------------ATATGAAAAACA-----------AAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGAATTAAAACTCTGACCCCCTCCCCC--CCTTCAATCTCCTACCCAC------------------------------CCAAA-AA-------------------------------ATTCCCGAT----CTTCATCTAGCTGAACGATACGACCAGTCCGGATAGTCCATCACTTGAATTTGTACCGGA
droFic1 scf7180000453882:293175-293302 + ACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACA------------------------AAAAAAAAACA--AACAAAAAACAAAATTAAAACTCTGC-C-CCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGATACGACCAGTCCGGATAGTCCGTCGCTTGAGTTTGTACCGGA
droEle1 scf7180000491023:217639-217758 + AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACAAA--AACCAAAACGAAAATTAAAACTATGCCC-CCTACCCC--CC---------------------------------------------------AAAA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTTGAATTTGTACCAGA
droRho1 scf7180000779985:144674-144817 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGACCAC---TACTTTTCTTATTGTTGCCTGATCGAAC--------AAAAACGAAAATTAAAACTATGCCC-CCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTTGAATTTGTACCGGA
droBia1 scf7180000298389:108297-108451 + TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA---------CTGACCAA---TACTTTTCTTATTGTTGCCTGAACGAACAGA--AACAAAAACGAAAATTAAAACTCTGCCC-CCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGACAGTCCGTCGCTTGAATTTGTACCGGA
droTak1 scf7180000414425:210806-210927 + AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCGAAAAAGAAAAACGAAAATTAAAACTCTGCCCCCCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGACAGTCCGTCGCTTGAATTTGTACCGGA
droEug1 scf7180000409110:924043-924276 + AAACA----AAAC--------------A-------AAAA---------------------------------------------------------------------------------------------------------------------AAAGAAGTGAATGT---------TATATAACCCTTAATAACTCCCTGATGAT--ACCCCCAA------------------ATCCCTTGTCTGTCGATA---------CCGACCAC---TACTTTTCTTATTGTTGCCTGAAAGAACAGA--AACAAAAACGAAAATTAAAACTCTGCCC-CCTACCCTGTTC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCACTTGAATTTGTACCGGA
dm3 chrX:12537700-12537955 + AACAA----AAAT-AACCCAGTAACCCAAAAAACAAAAACAAAAAT-----------------------------------------------------------TAATT---------------------------------------------------AGTGAATGT---------TA---ACCCCTTAAT----------------CTCCATGAAGTCCTC----TAAA---ATCCCATGTCCGTCGATA---------CCGACCACTACTACTTTTCTTATTGTTGCCTAAACGAACAGA--AAGAAAAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCTCTCGAATTTGTACCGGA
droSim2 x:11894107-11894263 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------TCGACCACTACTACTTTTCTTATTGTTGCCTAAAAGAACAGA--AAGAAGAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTCGAATTTGTACCGGA
droSec2 scaffold_21:292316-292472 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------TCGACCACTACTACTTTTCTTATTGTTGTCTAAAAGAACAGA--AAGAAAAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTCGAATTTGTACCGGA
droYak3 X:6814765-6814945 + AAAAA----AAAA--------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCTTGTCCGTCGATA---------CCGACCACTACTACTTTTCTTATTGTTGCCTGAACGAACAGA--AAGCAAAACGAAAATTAAATCTCTGCAA-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCACTTGAATTTGTACCGGA
droEre2 scaffold_4690:14321402-14321557 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------CCGACCACTACTACTTTTCCTATTCTTGCCTGAA-GAACAGA--CAGTGAAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTCGAATTTGTACCGGA
dp5 XL_group1a:3324844-3325085 + AGAATATTAAAAA--------------TC------------------------------------------------------------------------------------------------------------------------AAAACAAAAAAAAAACAAAACCAAAATATGTATCTATACCGTGCTACCTCCCT--------CCCCCCGAACCCCCAAAACCAAAACC----AAAACCCACCGACAACCAGAACCCCAA---CGACAACTTTTAT--TTGATGCCTGATCGA------------AAACGA-AATTATAATTATGCCC-CCAACACC----------------------------------------------------------------------------------------------CCG------CTTAATCTAGCTGAACGACACGACTAGCCCGGACAGTCCATCGATCGAGTTCATACCCGA
droPer2 scaffold_77:183116-183358 - AGAATATTAAAAA--------------TC------------------------------------------------------------------------------------------------------------------------AAAACAAAAAAAAAACAAAACCAAAATATGTATCTATACCGTGCTACCTCCCT-----T--CCCCCCGAACCCCCAAAACCAAAACC----AAAACCCACCGACAACCAGAACCCCAA---CGACAACTTTTAT--TTGATGCCTGATCGA------------AAACGA-AATTATAATTATGCCC-CCAACACC----------------------------------------------------------------------------------------------CCG------CTTAATCTAGCTGAACGACACGACTAGCCCGGACAGTCCATCGATCGAGTTCATACCCGA
droWil2 scf2_1100000004909:1903238-1903390 + CCCATAACAAAAAAAACTT-------------------AAACAGAT------------ATAGAACAAACC-----------AAAAA---AAAA-------AAAACCAACT------------------------------------------------------------------------------------ACCTCCCC--------------------------------------------------------------TCACTACTACTACTCCTCCTACTACTG------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAATTTAGCTAAACGACACAACTAGCCCGGATAGTCCATCAATTGAATTCATACCCGA
droVir3 scaffold_13042:2671038-2671097 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATAGCTGAACGATACGACCAGCCCGGACAGTCCGTCGATTGAGTTCATACCGGA
droMoj3 scaffold_6328:39460-39548 + T-------------------------------------------------------------------------------------------------------------TTTTGTCTCATAGCCCAGCACCCCCCACACAAAAAAAAAAAAAAAAAAAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AAACCC-------------------------------------------------ACGAAAAACAAAAACAGA
droGri2 scaffold_15203:5483738-5483795 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAGCTGAACGATACGACTAGCCCGGACAGTCCATCGATTGAGTTCATACCCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACGAA----ACAA--------------AATA----AAAATATAAAT--TCAAATAAAAACTTGAAAATCACAAATTAAGAATATACTGAAAATTAAAACTTTGACCCACTCTTTGCCCCCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCC-TCAACCCC-------------CCTCACATCAAAAAAAAAAAAAAAAAAAAAAAACCCAACCAAA-AA--------ATACCAAAAAAAAAAACAAACACAATCCTGATTCTCCGATCTTTAGCTGAACGATACGACCAGTCCGGATAGTCCATCGCTAGAATTTGTACCGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACCCAACCAA............................................................................................................2012.002020000
............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACCCAACCAAA-..........................................................................................................2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACCCAACCA.............................................................................................................1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACCCAACCA.............................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACCCAACCAC............................................................................................................2120.501010000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACCCAACCAC............................................................................................................2020.501010000
..............................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................23200.408800000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACCCAACCT.............................................................................................................2230.331010000
................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACCCAACCAAA-AA--------AA..............................................................................................2090.333030000
...............................................................................................................................................................................................................................................................................................................................................................................................................A-AA--------ATACCAAAAAAAAAAAC...............................................................................2040.251010000
.................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAACCCA.................................................................................................................2540.251010000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACCC..................................................................................................................18200.153030000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACCCA.................................................................................................................19200.153030000
.................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAACC...................................................................................................................23200.153030000
...................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAACCC..................................................................................................................22200.102020000
....................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACCCAACA..............................................................................................................25110.091010000
..................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACCC..................................................................................................................23170.061010000
droBip1
ACAAA----AAAA--------------AATAAATTAAAAAAAAAATATTT--------ATATGAAAATCACAAATCAAGAAAATACTGAAAATTAAAACTTTGACCCACTCT------------------------------------------------------------------------------TGCCCGTTTTTT-----GCCCCCACCGAT--------------------------------------------------------------------------------------------------------------------------CCC-------------CCCCACATCTAA------------------AAACCCCGC---A-AAAAAATAAAATACCAAAAA--------AACACAATCCTGATTCTCCGATATTTAGCTGAACGATACGACGAGCCCGGATAGTCCGTCGCTAGAATTTGTACCGGASizeHit CountTotal NormTotal
No Reads
droKik1
ACTTA----AAAA--------------AAAAAACAACAAAAAAAAT------------ATATGAAAAACA-----------AAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGAATTAAAACTCTGACCCCCTCCCCC--CCTTCAATCTCCTACCCAC------------------------------CCAAA-AA-------------------------------ATTCCCGAT----CTTCATCTAGCTGAACGATACGACCAGTCCGGATAGTCCATCACTTGAATTTGTACCGGASizeHit CountTotal NormTotal
No Reads
droFic1
ACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACA------------------------AAAAAAAAACA--AACAAAAAACAAAATTAAAACTCTGC-C-CCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGATACGACCAGTCCGGATAGTCCGTCGCTTGAGTTTGTACCGGASizeHit CountTotal NormTotal
No Reads
droEle1
AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACAAA--AACCAAAACGAAAATTAAAACTATGCCC-CCTACCCC--CC---------------------------------------------------AAAA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTTGAATTTGTACCAGASizeHit CountTotal NormTotal
No Reads
droRho1
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGACCAC---TACTTTTCTTATTGTTGCCTGATCGAAC--------AAAAACGAAAATTAAAACTATGCCC-CCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTTGAATTTGTACCGGASizeHit CountTotal NormTotal
No Reads
droBia1
TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA---------CTGACCAA---TACTTTTCTTATTGTTGCCTGAACGAACAGA--AACAAAAACGAAAATTAAAACTCTGCCC-CCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGACAGTCCGTCGCTTGAATTTGTACCGGASizeHit CountTotal NormTotal
No Reads
droTak1
AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCGAAAAAGAAAAACGAAAATTAAAACTCTGCCCCCCTACCCC--CC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGACAGTCCGTCGCTTGAATTTGTACCGGASizeHit CountTotal NormTotal
No Reads
droEug1
AAACA----AAAC--------------A-------AAAA---------------------------------------------------------------------------------------------------------------------AAAGAAGTGAATGT---------TATATAACCCTTAATAACTCCCTGATGAT--ACCCCCAA------------------ATCCCTTGTCTGTCGATA---------CCGACCAC---TACTTTTCTTATTGTTGCCTGAAAGAACAGA--AACAAAAACGAAAATTAAAACTCTGCCC-CCTACCCTGTTC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCACTTGAATTTGTACCGGASizeHit CountTotal NormTotal
No Reads
dm3
AACAA----AAAT-AACCCAGTAACCCAAAAAACAAAAACAAAAAT-----------------------------------------------------------TAATT---------------------------------------------------AGTGAATGT---------TA---ACCCCTTAAT----------------CTCCATGAAGTCCTC----TAAA---ATCCCATGTCCGTCGATA---------CCGACCACTACTACTTTTCTTATTGTTGCCTAAACGAACAGA--AAGAAAAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCTCTCGAATTTGTACCGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................GAATGT---------TA---ACCCCTTAAT----------------CTC......................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTCCGGATAGTCCGTCTCTCG.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CTGCAC-CCTACCCC--TC---------------------------------------------------A-A.........................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................A---ACCCCTTAAT----------------CTCCATGAAGT..............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GTCCGTCGATA---------CCGACCAC............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTCCGGATAGTCCGTCTCTCGAA...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCTCGAATTTGTACCGG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCTGAACGACACGACC...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTCCGTCTCTCGAATTTGTA.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGTCCGGATAGTCCGT...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTCCGGATAGTCCGTCTC................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................GT---------TA---ACCCCTTAAT----------------CTCCAT...................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGATAGTCCGTCTCTCGAAT..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGGATAGTCCGTCTCTCGA............2311.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGAAAAACGAAAATTAAAACTCTGCAC-...........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGATAGTCCGTCTCTCG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................AAAACAAAAACAAAAAT-----------------------------------------------------------TA................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------TCGACCACTACTACTTTTCTTATTGTTGCCTAAAAGAACAGA--AAGAAGAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTCGAATTTGTACCGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCTGAACGACACGACCAGTCCGG............................2612.00200200000000000000
.................................................................................................................................................................................................................................................................................................TGCCTAAAAGAACAGA--AAGAAGAA................................................................................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACGACCAGTCCGGATAGTCCGTC..................2711.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CTTCATCTAGCTGAACGACACGACCA..................................2711.00100000010000000000
droSec2
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------TCGACCACTACTACTTTTCTTATTGTTGTCTAAAAGAACAGA--AAGAAAAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTCGAATTTGTACCGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAAA----AAAA--------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCTTGTCCGTCGATA---------CCGACCACTACTACTTTTCTTATTGTTGCCTGAACGAACAGA--AAGCAAAACGAAAATTAAATCTCTGCAA-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCACTTGAATTTGTACCGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................AACGAAAATTAAATCTCTGCAA-CCTACCC....................................................................................................................................................................2911.00110000000000
droEre2
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATA---------CCGACCACTACTACTTTTCCTATTCTTGCCTGAA-GAACAGA--CAGTGAAACGAAAATTAAAACTCTGCAC-CCTACCCC--TC---------------------------------------------------A-AA-------------------------------AATCCCGAT----CTTCATCTAGCTGAACGACACGACCAGTCCGGATAGTCCGTCGCTCGAATTTGTACCGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGTCCGGATAGTCCGT...................2011.0010000100
dp5
AGAATATTAAAAA--------------TC------------------------------------------------------------------------------------------------------------------------AAAACAAAAAAAAAACAAAACCAAAATATGTATCTATACCGTGCTACCTCCCT--------CCCCCCGAACCCCCAAAACCAAAACC----AAAACCCACCGACAACCAGAACCCCAA---CGACAACTTTTAT--TTGATGCCTGATCGA------------AAACGA-AATTATAATTATGCCC-CCAACACC----------------------------------------------------------------------------------------------CCG------CTTAATCTAGCTGAACGACACGACTAGCCCGGACAGTCCATCGATCGAGTTCATACCCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AGAATATTAAAAA--------------TC------------------------------------------------------------------------------------------------------------------------AAAACAAAAAAAAAACAAAACCAAAATATGTATCTATACCGTGCTACCTCCCT-----T--CCCCCCGAACCCCCAAAACCAAAACC----AAAACCCACCGACAACCAGAACCCCAA---CGACAACTTTTAT--TTGATGCCTGATCGA------------AAACGA-AATTATAATTATGCCC-CCAACACC----------------------------------------------------------------------------------------------CCG------CTTAATCTAGCTGAACGACACGACTAGCCCGGACAGTCCATCGATCGAGTTCATACCCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCCATAACAAAAAAAACTT-------------------AAACAGAT------------ATAGAACAAACC-----------AAAAA---AAAA-------AAAACCAACT------------------------------------------------------------------------------------ACCTCCCC--------------------------------------------------------------TCACTACTACTACTCCTCCTACTACTG------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAATTTAGCTAAACGACACAACTAGCCCGGATAGTCCATCAATTGAATTCATACCCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................AAACAGAT------------ATAGAACAAACC-----------..........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
droVir3
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATAGCTGAACGATACGACCAGCCCGGACAGTCCGTCGATTGAGTTCATACCGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCAGCCCGGACAGTCCG....................2012.002020000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCCGGACAGTCCGTCGATTG.............2411.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGACCAGCCCGGA...........................1711.001000000000000000000000000000000000000000000000000000000000010000
droMoj3
T-------------------------------------------------------------------------------------------------------------TTTTGTCTCATAGCCCAGCACCCCCCACACAAAAAAAAAAAAAAAAAAAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AAACCC-------------------------------------------------ACGAAAAACAAAAACAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AA.......................................................................3621.002020000
...................................................................................................................................CCCCCACACAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................3611.001010000
.............................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AAA......................................................................3611.001000100
................................................................................................................................................................AAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AAACCC-------------------------------------------------..................2011.001000010
...............................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AAACA....................................................................3630.331010000
.............................................................................................................................................................AAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-AA-------------------------------AA.......................................................................19100.101000010
.............................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------------------------A-C.........................................................................................................32190.051010000
........................................................................................................................................ACACAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAGCTGAACGATACGACTAGCCCGGACAGTCCATCGATTGAGTTCATACCCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:20 AM