ID:

dan_128

 Coordinate:

scaffold_13417:2467589-2467647 -

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.5 -31.4

Flybase annnotation

utr5 [utr5_plus_15691]

No Repeatable elements found

Sense Strand Reads

CCGTCCAGAGGGTCGAGCGCTACCGATGCTCCCCGAAGGAGCGCCTCGACATTGGTGAGTTCATCTCCAATGGTCAGTAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTCCTACCCCCACACCAGCGAGGCACACGCGTACCGCCGAGGT

***********************************.((((.(((.(((.((((((((((......(((((((............)))))))......)))))))))).))).)))..))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V106

head

 V105

male body		 V055

head

 M044

female body

 V039

embryo
......................................................................................TTGGATTAGTTCTCATTGATGG................................................... 22 0 1 830.00 830 428 281 61 59 1
......................................................................................TTGGATTAGTTCTCATTGATG.................................................... 21 0 1 292.00 292 104 168 17 3 0
......................................................................................TTGGATTAGTTCTCATTGATGT................................................... 22 1 1 62.00 62 14 47 1 0 0
......................................................................................TTGGATTAGTTCTCATTGATGGT.................................................. 23 1 1 35.00 35 18 14 1 2 0
......................................................................................TTGGATTAGTTCTCATTGAT..................................................... 20 0 1 18.00 18 1 13 4 0 0
......................................................................................TTGGATTAGTTCTCATTGATGGC.................................................. 23 0 1 11.00 11 4 6 0 1 0
.....................................................................................ATTGGATTAGTTCTCATTGATG.................................................... 22 0 1 11.00 11 1 10 0 0 0
......................................................................................TTTGATTAGTTCTCATTGATGG................................................... 22 1 1 9.00 9 9 0 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATGGA.................................................. 23 1 1 8.00 8 5 3 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATGGTT................................................. 24 2 1 6.00 6 2 3 0 1 0
.......................................................................................TGGATTAGTTCTCATTGATGG................................................... 21 0 1 4.00 4 0 0 0 4 0
......................................................................................TTGGATTAGTTCTAATTGATGG................................................... 22 1 1 4.00 4 3 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATT.................................................... 21 1 1 4.00 4 2 2 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATTG................................................... 22 1 1 4.00 4 3 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATAG................................................... 22 1 1 3.00 3 2 1 0 0 0
......................................................................................TTGGATTAGCTCTCATTGATGG................................................... 22 1 1 3.00 3 1 0 2 0 0
......................................................................................TTGGATTAGTTATCATTGATGG................................................... 22 1 1 3.00 3 1 2 0 0 0
.....................................................................................ATTGGATTAGTTCTCATTGATGT................................................... 23 1 1 3.00 3 0 3 0 0 0
......................................................................................TGGGATTAGTTCTCATTGATGG................................................... 22 1 1 3.00 3 0 3 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATA.................................................... 21 1 1 3.00 3 2 1 0 0 0
......................................................................................TTGGATTAGTTCTCAGTGATGG................................................... 22 1 1 3.00 3 0 3 0 0 0
......................................................................................TTGGATTAGTCCTCATTGATGG................................................... 22 1 1 3.00 3 0 3 0 0 0
......................................................................................TTGGATTAGTTCTCATTAATGC................................................... 22 2 1 2.00 2 2 0 0 0 0
......................................................................................TTGGATTAGTTGTCATTGATGG................................................... 22 1 1 2.00 2 0 2 0 0 0
......................................................................................TTGGGTTAGTTCTCATTGATGG................................................... 22 1 1 2.00 2 1 0 1 0 0
......................................................................................TTGGATTAGTTCTCATTGATCG................................................... 22 1 1 2.00 2 1 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATC.................................................... 21 1 1 2.00 2 1 1 0 0 0
......................................................................................TTGGATTAGTTCACATTGATGG................................................... 22 1 1 2.00 2 1 1 0 0 0
......................................................................................TTGGATTAGCTCTCATTGATG.................................................... 21 1 1 2.00 2 2 0 0 0 0
......................................................................................TTTGATTAGTTCTCATTGATG.................................................... 21 1 1 2.00 2 2 0 0 0 0
......................................................................................TTGGATTAGTTCTCATTAATGG................................................... 22 1 1 2.00 2 1 1 0 0 0
......................................................................................TTGGATTAGTTTTCATTGATGG................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................CCCGAAGGAGCGCCTCGAC............................................................................................................. 19 0 1 2.00 2 0 0 0 2 0
......................................................................................TTGGATTAGTTCTCATTGGTGG................................................... 22 1 1 2.00 2 2 0 0 0 0
......................................................................................TTGGATTAGTTCTCATTCATGG................................................... 22 1 1 2.00 2 1 1 0 0 0
......................................................................................TTGGATTAGTTCTTATTGATGG................................................... 22 1 1 2.00 2 1 0 1 0 0
......................................................................................TTGGTTTAGTTCTCATTGATGG................................................... 22 1 1 2.00 2 0 0 2 0 0
.....................................................................................ATTGGATTAGTTCTCATTGATGA................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................TTGTATTAGTTCTCATTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCCTTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.......................................................................................TGGATTAGATCTCATTGATGGT.................................................. 22 2 1 1.00 1 0 0 0 1 0
......................................................................................TTGGATTAGTTCTCATTGTTGG................................................... 22 1 1 1.00 1 0 0 1 0 0
......................................................................................TTTGATTAGTTCTCATTGATGT................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................TTGGCTTAGTTCTCATTGATGG................................................... 22 1 1 1.00 1 0 0 1 0 0
.....................................................................................ATCGGATTAGTTCTCATTGATG.................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCATGGATGG................................................... 22 1 1 1.00 1 1 0 0 0 0
......................................................................................TTGGATTGGTTCTCATTGATG.................................................... 21 1 1 1.00 1 0 0 1 0 0
......................................................................................TTGCATTAGTTCTCATTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.....................................................................................ATTGGATTAGTTCTCATTGA...................................................... 20 0 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAATTCTCATTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATGGTTT................................................ 25 3 1 1.00 1 0 1 0 0 0
......................................................................................TCGGATTAGTTCTCATTGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCACTGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................CTGGATTAGTTCTCATTGATGG................................................... 22 1 1 1.00 1 1 0 0 0 0
......................................................................................GTGGATTAGTTCTCATTGATGG................................................... 22 1 1 1.00 1 0 0 0 1 0
......................................................................................TTGGATTAGTTCTCATTGCTGG................................................... 22 1 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTCCTCATTGATG.................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................TTGGTTTAGTTCTCATTGATG.................................................... 21 1 1 1.00 1 0 0 1 0 0
......................................................................................TCGGATTAGTTCTCATTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTGA...................................................... 19 0 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGATCTCATTGATAC................................................... 22 3 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTTCTCATCGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTGTCATTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTTATGGT.................................................. 23 2 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCATTGATAT................................................... 22 2 1 1.00 1 1 0 0 0 0
......................................................................................TTGGATTAGCTCTCATTGCGGG................................................... 22 3 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTTCTCATTGATGGAAT................................................ 25 3 1 1.00 1 0 1 0 0 0
......................................................................................TTGGCTTAGTTCTCATTGATGC................................................... 22 2 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTTCTCATTTATGG................................................... 22 1 1 1.00 1 1 0 0 0 0
......................................................................................TTGGATTACTTCTCATTGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCACTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTATTTCTCATTGATGG................................................... 22 1 1 1.00 1 0 0 0 1 0
......................................................................................TTGGGTTAGTTCTCATTGATGGTT................................................. 24 3 1 1.00 1 1 0 0 0 0
......................................................................................TTGGATTAGTACTCATTGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
...................................................TTGGTGAGGGCATCTCCAATGG...................................................................................... 22 2 1 1.00 1 0 0 0 1 0
......................................................................................TTGGATTAGTTCACATTGAT..................................................... 20 1 1 1.00 1 0 1 0 0 0
...............................................................................GCCCGCACTGGATTATTT.............................................................. 18 2 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTGCTCATTGATG.................................................... 21 1 1 1.00 1 0 1 0 0 0
......................................................................................TTTGATTAGTTCTCATTGATTG................................................... 22 2 1 1.00 1 0 0 1 0 0
.............................TCCCCGAAGGAGCGCCTCGAC............................................................................................................. 21 0 1 1.00 1 0 0 0 1 0
......................................................................................TTGGATTAGTTATCATTGATGGTT................................................. 24 3 1 1.00 1 1 0 0 0 0
......................................................................................TTGGGTTAGTTCTCATTGATGC................................................... 22 2 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTTCTCATTGTTG.................................................... 21 1 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTTCTCATTGAGGG................................................... 22 1 1 1.00 1 0 0 1 0 0
......................................................................................TTGGATTAGTTATCATTGATG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.....................................................................................ATTGGATTAGTTCTCATTGAT..................................................... 21 0 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATGAGTTCTCATTGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCCCATTGATGG................................................... 22 1 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTAGTTATCATTGATGT................................................... 22 2 1 1.00 1 0 1 0 0 0
......................................................................................TTGGATTACTTCTCATTGATG.................................................... 21 1 1 1.00 1 0 0 0 1 0
......................................................................................TTGGACTAGTTCTCATTGATG.................................................... 21 1 2 0.50 1 0 1 0 0 0
.......................................................................................TTGATTAGTTCTCATTGATG.................................................... 20 1 2 0.50 1 0 1 0 0 0
......................................................................................TTGGATTAGTTCTCATCGACTG................................................... 22 3 2 0.50 1 0 0 1 0 0
......................................................................................TTGGATTAGTTCTCATTGATGAAT................................................. 24 3 2 0.50 1 1 0 0 0 0
......................................................................................GTCGATTAGTTCTTATTGATG.................................................... 21 3 2 0.50 1 0 0 1 0 0
.............................................................................................................................CCACAACAGCGAGCCACACG.............. 20 2 2 0.50 1 0 0 0 0 1
......................................................................................TTGGATTAGTTCACATTGATGGTC................................................. 24 3 2 0.50 1 0 1 0 0 0
.......GTGTGTCGCGCGCTACCGA..................................................................................................................................... 19 3 3 0.33 1 0 0 0 1 0
......................................................................................TTGGAGTAGTTCTCATTGCGG.................................................... 21 3 3 0.33 1 0 0 1 0 0
.......................................AGTGCCTCGACATTGATGTGT................................................................................................... 21 3 3 0.33 1 0 0 1 0 0
.......................................................................................TTGGATAGTTCTCATTGATGG................................................... 21 3 4 0.25 1 1 0 0 0 0
.....CATACGGTCGAGCGCTCCC....................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0

Anti-sense strand reads

GGCAGGTCTCCCAGCTCGCGATGGCTACGAGGGGCTTCCTCGCGGAGCTGTAACCACTCAAGTAGAGGTTACCAGTCATCGGGCGTAACCTAATCAAGAGTAACTACCGCTTCGCTCAGGATGGGGGTGTGGTCGCTCCGTGTGCGCATGGCGGCTCCA

***********************************.((((.(((.(((.((((((((((......(((((((............)))))))......)))))))))).))).)))..))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V106

head

 V055

head
...AGGTATGCCAGCTCGTGATG........................................................................................................................................ 20 3 3 1.00 3 2 1 0
....................................................ACCACACTAGTAGAGGTTA........................................................................................ 19 2 3 0.33 1 1 0 0
.................................................................................................................................TGGTCGATCCGTGTGCCGAT.......... 20 3 5 0.20 1 0 0 1
...AGGTATGCCAGCTCGTGAT......................................................................................................................................... 19 3 8 0.13 1 0 1 0
...AGGTCTGCCAGCTCGTGAG......................................................................................................................................... 19 3 14 0.07 1 0 1 0
.....................................................CCACACTAGTAGAGGTTAA....................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13417:2467539-2467697 - dan_128 candidate-rescued CC--GTCCAGAGG-----GTCG--AGCGC-----------------------------------------------TAC------C----------GAT--------------------------GCT-CCCCG---AAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGGT--CA--GT---AG------CCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTCC---TACCCCCA------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGAG--------------GCAC--A-------CGCGTACCGCCGAGGT--------------
droBip1 scf7180000395874:39904-40062 - CC--GTCCAGAGG-----GTCG--AGCGC-----------------------------------------------TAG------C----------GAT--------------------------GCT-CCGTG---AAGGAGCGCCTCGCCATTGGTGGGGG-CGTCTCCAATGGC--CA--GA---AG------CCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTCC---TTCCTCCA------CACCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC--------------CCAA--A-------CGCATACCGCTGAGGT--------------
droKik1 scf7180000302517:1183681-1183866 + CG---------------------------------------------------------------------------------------------------------------------------------------AGGCATTGCCTCGCCATTGGTGAGAG-CATCTCCAATGAC--GGCACT---TG------ATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATT--GCACC-----TACTCCAGCAACGGCTATCCAGGTAACCAGCTAAACAGCTACCCATCTACTCAGCTCCTCTGGGAGTCGAGGCT-------------CT-AG-----------------------------------------------------------------------------------------------------------------------------------A-------TGCAAACCTCCATGGC--------------
droFic1 scf7180000454073:1733873-1734054 + TT--CAGCCGGCG-----A--A--GGACA-------------TCGAAGGAAT-----G--------------------------------------------------AA---------------T-CA-CCGCAGACAGCGGCGCCCCGCCATTAATAAGGA-CCTCTCCAATGGC--AGACCG---TC------GAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCC--GCACC-----GACC--ACCACATT--------------------------TT----------------------------------TTTCTA-AG------------------------------------------------------------------------------------------------------------TGCCTAATTC--------------CCGCAAGTCCAATC----------CAACAT--------------
droEle1 scf7180000490751:1118741-1118921 + TC--CA---AATT-----GC----------ATCACCATCACCTCA----------------------------------------CCATCACCATCAAT--------------------------ACCTGCACA---AAGCATCGCCTCGCCATTGGTGAGGG-CACCTCCAATGGC--GA--GC---CG------GCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCT--GCACT-----GACC--AGCAGACC--------------------------GAC-------------------------------AGATCG-----------------------------------------------------------------------------TG----------------ATCC---------------------------------------ATCCATTCCCCTC----------CAAGGT--------------
droRho1 scf7180000761121:190028-190243 - AA--CGTTGGAGG-----ACCA--GGACC-------------TCG----------------------------------------G----------G-----------AA---------------CCG-CCTGCAAACAGCATCACCTCGCCATTGGTGAGGG-CATCTCCAATGAC--GA--GT---CG------GCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGT--GCACT-----GACC--AGCAGACT--------------------------GAC---------------------------------------------------------------CTCTCCGCTAGCACCAGATCCCAAATCTTAG----------------ATCCCG----------------ACCCATCCA--------CTGCCAGCAT---------------CATCCATTCCACAC----------CAAGGT--------------
droBia1 scf7180000302069:1150945-1151161 - AA--AGCGTGAGG-----GGGG--GGAAA-------------T---------------------------CAATGCTGGTGG---G----------G------------A-----------------T--GAGG---AAGCACCGCCTCGGCATTGGTGAGGG-CACCTCCAATGGC--GA--GC---CG------GCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCT--GCACC-----GACC--AACGCCAC------------------------------------------------------------ATACGGTGGGATCCCCAACGTCGCAGTGGGTCCTATG-------------------------------TTCCAGTACTAGTCCAG----------------ACCT---------------------------------------ACCCAATTCACAC----------CAAGGC--------------
droTak1 scf7180000415169:844755-844970 - TT--CG---AAGAATCTATTCTAAAG----------------------------CTGAATC----------TGGAGAGGAGGA--G----------A-----------A------------------A--GAGG---AAGCATCGCCTCGACATTATTGAGGG-CACCTCCAATGGC--GA--GC---CG------ACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCT--GCACT-----GACC--AACTGTTC--------------------------GTCC------------------------------ATAAGGTGAGAT----------------------------------------------------------------------------CTAATGGGTATCGTATTGTCTA--------ATTATTGAATC--------------TTGCTAGTTAACCC----------CAAGGT--------------
droEug1 scf7180000409230:879607-879795 - TT--CG---AATA-----A-----------------------TCGAGGAAAGCATCGAAAC------------------------------------------------------------------A--TCTG---ATGCAGCGCCTTGACATTGGCGAGGC-CAACTCCAATGTC--GA--AT---CG------AAATCATTGGATTAGTTCTCATCAATGACTGAGCCCT--GTAAT-----GACC--AACGTACC------------------------------------------------------------ATATCT-----------------------------------------------------TTATATCCATATCCATGTCCAGTGGAAATCTACAGGCC-----------------------------------------------------ACCAACC----------CAAGGT--------------
dm3 chrX:19452895-19453072 + dme-mir-976 Known_mirbase AT--GCACTGGA-----------------------------------------------ATGTCTGCAA-CGGCGGTGGTGG---G----------C------------A-----------------T--CGCC---ATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGGA-TTA--GT---TC------TCAACATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACC-----TAAC--AACATCGC------------------------------------------------------------GCC--GGGGAATCCC-A------------------------------------------------------------------------------------ACACAACGAATCAACA--------------------------------------AA----------CAAGGT--------------
droSim2 x:18342510-18342687 + dsi-mir-976 Known_mirbase CGAGGA------------------------------------TCGAAGGAAGCACTGGAA-----------------------------------------------------------------C-CT-CCGC---ATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGGA-TTG--GT---TC------TCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACTGC---TGTC--AACTTCGC------------------------------------------------------------GCA--ATGGAATACC-A-----------------------------------------------------------------------------------------------------ACTCCGGAGTG--------------CCGAAAATGCATCC----------CAAGGT--------------
droSec2 scaffold_8:1735220-1735389 + dse_168 candidate-rescued CGAGGA------------------------------------TCGCAGGAAGCA-----------------------------------------------------------------------C-CT-CCGC---ATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGGC-TTA--GT---TC------TCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCAGC-----TGTC--AACTTCGC------------------------------------------------------------GCA--ATGGAATACC-A-----------------------------------------------------------------------------------------------------ACTCCGGAGTG--------------CCGAAAATTCATCC----------CAAGGT--------------
droYak3 X:11885730-11885962 - dya_50 confident AG--GATCGGGAG-----ATCG--GGAGT-------------TTGGAGGAGGCATTGAAGT----------TCCAGAGGTGAGTGA----------G-----------AA--------------------TCGC---ATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGGG--GA--CC---CG------GCATCATTGGATTAGTTCTCATTAATGCCGGAGCACT--GCACC-----TACC--AACTTCGC------------------------------------------------------------ACG--GT-----------------------TC---------------------------CTATTCCTATTCCGATTCCGATTCGGA------------------------ATCAACCAAGTGCGGACAG--------------CTCAGAGTTCACCC----------CAAGGT--------------
droEre2 scaffold_4690:9688869-9689086 + der_56 confident AG--GATCGG------------------------------------AGGAAGCCTTGAAGC----------TCCAGAGGTGTGCCA----------G-----------AA--------------------TCGC---ATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGGG--GA--GC---CA------GCATCATTGGATTAGTTCTCATTAATGCCGGAGCATG--GCACC-----TACG--AACTGAGC--------------------------AT-----------------TTGG-----------GGA--TCGGGATCCC-GG-------------------------------------------------------------ATTCGGA------------------------GTCAACAAACT-------CTTGTCAAACAAACGAGCAGAATTCAACC----------CAAGGT--------------
droWil2 scf2_1100000004909:7956785-7956931 + A---------------------------------------------------------------------------------------------------------------------------------------------ACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTG--GAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTT--T--GT-----GAGC--AATATCGT------------------------------------------------------------ATATTGTG---------------------------------------------------------------------------------------------------------------------------------------CGTGCAGTGTATTG----------TGATGTGACACCGTGGACGA
droVir3 scaffold_13042:906663-906906 - dvi-mir-976 Known_mirbase TC--AGCCCGCAG------CCA--AGTGTTATCGGTAT-----CG------------------------TTATCG----------TTATCGTTATCGTTATCAGAATTAATTATCGTTGAAGTGCGTT-CTTTG---GTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGAG--CA--------T------ATCACATTGGATTAGTTCTCATCGATGCCGATGCGCT--GTACC-----AGCAACAACAACAGG------AATAGCAACGGAAACAGGAACC-------------------GGAACAGAAACA-------------GG-AA-------AAAGA-----------------------------------------------------------------------------------------------------------------AATTGTGTT--CCC----------CCTGGC--------------
droMoj3 scaffold_6328:2900932-2901126 - dmo_205 confident TC--AAACAACTG-----GCCCAAAGTGTTATCGTTAT-----CG------------------------TTATCGCTAG------C----------GAC--------------------------GCT--TCGG---GTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGAG--TA--T------------TTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCT--GTATC-----AGCAACAACAACAAC----------------------------------------------------------------ATG----------------------------------------------------------------------------AG------------------------TTAAACGAAATG-AACCAG--------------TTCGTTGTTCTGG-----------CCCAGC--------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CC--GTCCAGAGG-----GTCG--AGCGC-----------------------------------------------TAC------C----------GAT--------------------------GCT-CCCCG---AAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGGT--CA--GT---AG------CCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTCC---TACCCCCA------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCGAG--------------GCAC--A-------CGCGTACCGCCGAGGT--------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGG..........................................................................................................................................................................................................................................................................................221830.00830590161281428
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATG...........................................................................................................................................................................................................................................................................................211292.0029230017168104
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGT..........................................................................................................................................................................................................................................................................................22162.006200014714
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGT.........................................................................................................................................................................................................................................................................................23135.003520011418
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGAT............................................................................................................................................................................................................................................................................................20118.00180004131
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGC.........................................................................................................................................................................................................................................................................................23111.0011100064
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATG...........................................................................................................................................................................................................................................................................................22111.00110000101
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGA.........................................................................................................................................................................................................................................................................................2318.008000035
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGTT........................................................................................................................................................................................................................................................................................2416.006100032
...........................................................................................................................................................................................................TGGATTAGTTCTCATTGATGG..........................................................................................................................................................................................................................................................................................2114.004400000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATT...........................................................................................................................................................................................................................................................................................2114.004000022
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATGT..........................................................................................................................................................................................................................................................................................2313.003000030
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATA...........................................................................................................................................................................................................................................................................................2113.003000012
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATC...........................................................................................................................................................................................................................................................................................2112.002000011
..................................................................................................................................CCCG---AAGGAGCGCCTCGAC..................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATGA..........................................................................................................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTGA.............................................................................................................................................................................................................................................................................................2011.001000010
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGTTT.......................................................................................................................................................................................................................................................................................2511.001000010
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGA.............................................................................................................................................................................................................................................................................................1911.001000010
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATAT..........................................................................................................................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGAAT.......................................................................................................................................................................................................................................................................................2511.001000010
...............................................................................................................................T-CCCCG---AAGGAGCGCCTCGAC..................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTGAT............................................................................................................................................................................................................................................................................................2111.001000010
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGAAT........................................................................................................................................................................................................................................................................................2420.501000001
droBip1
CC--GTCCAGAGG-----GTCG--AGCGC-----------------------------------------------TAG------C----------GAT--------------------------GCT-CCGTG---AAGGAGCGCCTCGCCATTGGTGGGGG-CGTCTCCAATGGC--CA--GA---AG------CCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTCC---TTCCTCCA------CACCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC--------------CCAA--A-------CGCATACCGCTGAGGT--------------SizeHit CountTotal NormTotal
No Reads
droKik1
CG---------------------------------------------------------------------------------------------------------------------------------------AGGCATTGCCTCGCCATTGGTGAGAG-CATCTCCAATGAC--GGCACT---TG------ATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATT--GCACC-----TACTCCAGCAACGGCTATCCAGGTAACCAGCTAAACAGCTACCCATCTACTCAGCTCCTCTGGGAGTCGAGGCT-------------CT-AG-----------------------------------------------------------------------------------------------------------------------------------A-------TGCAAACCTCCATGGC--------------SizeHit CountTotal NormTotal
No Reads
droFic1
TT--CAGCCGGCG-----A--A--GGACA-------------TCGAAGGAAT-----G--------------------------------------------------AA---------------T-CA-CCGCAGACAGCGGCGCCCCGCCATTAATAAGGA-CCTCTCCAATGGC--AGACCG---TC------GAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCC--GCACC-----GACC--ACCACATT--------------------------TT----------------------------------TTTCTA-AG------------------------------------------------------------------------------------------------------------TGCCTAATTC--------------CCGCAAGTCCAATC----------CAACAT--------------SizeHit CountTotal NormTotal
No Reads
droEle1
TC--CA---AATT-----GC----------ATCACCATCACCTCA----------------------------------------CCATCACCATCAAT--------------------------ACCTGCACA---AAGCATCGCCTCGCCATTGGTGAGGG-CACCTCCAATGGC--GA--GC---CG------GCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCT--GCACT-----GACC--AGCAGACC--------------------------GAC-------------------------------AGATCG-----------------------------------------------------------------------------TG----------------ATCC---------------------------------------ATCCATTCCCCTC----------CAAGGT--------------SizeHit CountTotal NormTotal
No Reads
droRho1
AA--CGTTGGAGG-----ACCA--GGACC-------------TCG----------------------------------------G----------G-----------AA---------------CCG-CCTGCAAACAGCATCACCTCGCCATTGGTGAGGG-CATCTCCAATGAC--GA--GT---CG------GCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGT--GCACT-----GACC--AGCAGACT--------------------------GAC---------------------------------------------------------------CTCTCCGCTAGCACCAGATCCCAAATCTTAG----------------ATCCCG----------------ACCCATCCA--------CTGCCAGCAT---------------CATCCATTCCACAC----------CAAGGT--------------SizeHit CountTotal NormTotal
No Reads
droBia1
AA--AGCGTGAGG-----GGGG--GGAAA-------------T---------------------------CAATGCTGGTGG---G----------G------------A-----------------T--GAGG---AAGCACCGCCTCGGCATTGGTGAGGG-CACCTCCAATGGC--GA--GC---CG------GCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCT--GCACC-----GACC--AACGCCAC------------------------------------------------------------ATACGGTGGGATCCCCAACGTCGCAGTGGGTCCTATG-------------------------------TTCCAGTACTAGTCCAG----------------ACCT---------------------------------------ACCCAATTCACAC----------CAAGGC--------------SizeHit CountTotal NormTotal
No Reads
droTak1
TT--CG---AAGAATCTATTCTAAAG----------------------------CTGAATC----------TGGAGAGGAGGA--G----------A-----------A------------------A--GAGG---AAGCATCGCCTCGACATTATTGAGGG-CACCTCCAATGGC--GA--GC---CG------ACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCT--GCACT-----GACC--AACTGTTC--------------------------GTCC------------------------------ATAAGGTGAGAT----------------------------------------------------------------------------CTAATGGGTATCGTATTGTCTA--------ATTATTGAATC--------------TTGCTAGTTAACCC----------CAAGGT--------------SizeHit CountTotal NormTotal
No Reads
droEug1
TT--CG---AATA-----A-----------------------TCGAGGAAAGCATCGAAAC------------------------------------------------------------------A--TCTG---ATGCAGCGCCTTGACATTGGCGAGGC-CAACTCCAATGTC--GA--AT---CG------AAATCATTGGATTAGTTCTCATCAATGACTGAGCCCT--GTAAT-----GACC--AACGTACC------------------------------------------------------------ATATCT-----------------------------------------------------TTATATCCATATCCATGTCCAGTGGAAATCTACAGGCC-----------------------------------------------------ACCAACC----------CAAGGT--------------SizeHit CountTotal NormTotal
No Reads
dm3
AT--GCACTGGA-----------------------------------------------ATGTCTGCAA-CGGCGGTGGTGG---G----------C------------A-----------------T--CGCC---ATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGGA-TTA--GT---TC------TCAACATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACC-----TAAC--AACATCGC------------------------------------------------------------GCC--GGGGAATCCC-A------------------------------------------------------------------------------------ACACAACGAATCAACA--------------------------------------AA----------CAAGGT--------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................22136299.0036299000000011111500000000000523300000000000122311024170101312100000000000000000000000000102071000025123210350147020030320351313000001000300032000000000000000021004000000000000000025050032709000720000012638385900004660579000000210000000002963204662734518740020100000001302230101351121311120200388149402215102118101303027301374610433019022019304445003411811214461126050060450113209968611720
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATG...........................................................................................................................................................................................................................................................................................21112374.001237400000000000000000000000901000000000000000030102010010000000000000000000000000000010100000000000010200000100000002000201001000100002000000000000000000006000000000000000050300153015010400000071227813540000980010410000001100021000016350000350006100100000000001006200460042100000012422129306000030001000720003020049020000115401401880003000237920001010070311331001394140
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................2315476.0054760000000000050000000000056900000000000000003020210000100000000000000000000000000000010030000100070016101201002002015100200000000100000000000000000000000002500000000000000003010007100003000000421211650000810980000000000000000037003115124014300100000000000002800121022001000115012751030112500030006000000032701000001801015000014014730010208010400000112651150
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAAT............................................................................................................................................................................................................................................................................................2011576.001576000000000000000000000004700000000000000000000000000000000000000000000000000000000000000000000010010000000000120000000000000000000000000000000000000000100000000000000022000003000002000000017868900001150104000000000000000001400000000000000000000000000040020030100000001141200200000000000010000000003000000013046000001129800000020108101000249020
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGATC........................................................................................................................................................................................................................................................................................2411447.00144700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024423000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................2211236.0012360000010000050000000000055000000000000000000000000001000000000000000000000000000000020020000000012008000002002005013620300000000000002000000000000000000000000000000000000000000070300000000002130200000303000000200000000000100120362019000100000000000006002000000000000201500000000000000000000000000100000000011000000016300000000000000000204020
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCATC.......................................................................................................................................................................................................................................................................................251950.009500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000716234000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCATC......................................................................................................................................................................................................................................................................................261423.00423000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032499000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................211245.0024500000000000000000000000124000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000101000000100000000000000000000000000000000000000000000001000000000000000102500200000000000000001000000000000000000000000300000000000000000154010
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCA.........................................................................................................................................................................................................................................................................................231228.00228000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000901000000000000000000000001000100000024000000000000000000000000000305800000001000000000000000000000000020000000010780000000000000000034000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGT..........................................................................................................................................................................................................................................................................................221187.001870000000000000000000000018000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000001703000090900000000000000000000000000000000000000000000001000001000000000106300000000000000000000000000000000020100000000570000001010000000010000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT.........................................................................................................................................................................................................................................................................................231152.00152000000000000000000000005000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000010400000000000000000000000000000000000000000001000000000000000000004201000000000000000000000000000000010110000000710000001000000000018000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAA.............................................................................................................................................................................................................................................................................................191147.00147000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000002709000050230000000000000000000000000000000000000000000000000100000000000000490000000000000000000000000000000010014000000030000000000001100035000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCATC......................................................................................................................................................................................................................................................................................25195.009500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CGCC---ATGCAGTGCCGCGGC..................................................................................................................................................................................................................................................................................................................................................................19193.0093000000000000000000000004600000000000000000000000000000000000000000000000000000000000270010000015002000000001000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000004000000000000000000000001000000000000000000001000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGA..........................................................................................................................................................................................................................................................................................22168.006800000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000000000000000001980000000000010010000000000000015000000000000000000000010000000000001000000007000000000000000009000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATT...........................................................................................................................................................................................................................................................................................21164.006400000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010170000305000000000000000000000000000000000000000000000030000000000000000027000000000000000000000000010000000001000000002000000000000000002000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCA........................................................................................................................................................................................................................................................................................24159.00590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000180000000020000000000000000000000000000000000000000000000000000000000000000000100000006000000001000000000000000000000000000021000300000000000000000000000000000016000010000000000000000000000000000100000000008000000000000000007000
........................................................................................................................................................ATTGGTGAGGC-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................22158.005800000000000000000000000100000000000000000010000100000000000000000000000000000100030210000000010000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000130000100000000000000000000100000000000000000000000000020000000000000001011000000000000000100000001000000000000000000005000000000000000009000
.......................................................................................................................................................CATTGGTGAGGC-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................20156.005600000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100002020000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000220000000000000000018000
.......................................................................................................................................................CATTGGTGAGGC-CATCTCC...............................................................................................................................................................................................................................................................................................................................................19153.005300000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000040000000000100000036000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT........................................................................................................................................................................................................................................................................................24143.00430000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002020000100000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000100000000000000000090000000000000000019000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCA........................................................................................................................................................................................................................................................................................23135.00350000000000000000000000018000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000001000000000000000006000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATG...........................................................................................................................................................................................................................................................................................20134.00340000000000010000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000403000010100000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000005000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGATC........................................................................................................................................................................................................................................................................................23125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGGTGAGGC-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................19124.002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000013000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGAT.........................................................................................................................................................................................................................................................................................23120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CATTGGTGAGGC-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................22118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300100100000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000005000000000000000000000
........................................................................................................................................................ATTGGTGAGGC-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................21117.0017000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000003000000000000000003000
...............................................................................................................................T--CGCC---ATGCAGTGCCGCGGC..................................................................................................................................................................................................................................................................................................................................................................20116.0016000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000310000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................18116.0016000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCT........................................................................................................................................................................................................................................................................................23115.0015000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000002000000000000000001000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATA...........................................................................................................................................................................................................................................................................................21114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000102000000000000000000000000000000000000000010000000000000000000000000000002000000000000000000000000000000000001000000002000000000000000003000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATC...........................................................................................................................................................................................................................................................................................21114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000020100000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000001000000000000000001000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCT.........................................................................................................................................................................................................................................................................................22111.0011000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000001000000000000000001000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCATC.......................................................................................................................................................................................................................................................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGG..........................................................................................................................................................................................................................................................................................2219.009000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000100000000000000000000000000002000
.......................................................................................................................................................CATTGGTGAGGC-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................2119.009000000000001000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................ATTGGTGAGGC-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................2018.008000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000003000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCG.........................................................................................................................................................................................................................................................................................2318.008000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000003000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCA..............................................................................................................................................................................................................................................................................................1817.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000001000
.........................................................................................................................................................................................................ATTGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................2316.006000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000300000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGTT.........................................................................................................................................................................................................................................................................................2315.005000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000002000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAA........................................................................................................................................................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCAT.......................................................................................................................................................................................................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAT........................................................................................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCC........................................................................................................................................................................................................................................................................................2313.003000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATCT..........................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATTT..........................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCC........................................................................................................................................................................................................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000002000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCTA........................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATAG..........................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGAGGA------------------------------------TCGAAGGAAGCACTGGAA-----------------------------------------------------------------C-CT-CCGC---ATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGGA-TTG--GT---TC------TCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACTGC---TGTC--AACTTCGC------------------------------------------------------------GCA--ATGGAATACC-A-----------------------------------------------------------------------------------------------------ACTCCGGAGTG--------------CCGAAAATGCATCC----------CAAGGT--------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................2311235.00123536958502029330000019000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................2211107.0011070300921253010000154000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCG........................................................................................................................................................................................................................................................................................241464.004640000458600000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAAT............................................................................................................................................................................................................................................................................................191285.002850000278700000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAA.............................................................................................................................................................................................................................................................................................181266.002660000263300000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCG........................................................................................................................................................................................................................................................................................231179.001790000171700000001000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................221169.00169121021251100000018000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCA..............................................................................................................................................................................................................................................................................................181126.001260100123200000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAA.............................................................................................................................................................................................................................................................................................191105.001050200100200001000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAAT............................................................................................................................................................................................................................................................................................201100.00100000098200000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................21193.00930000703100000019000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATG...........................................................................................................................................................................................................................................................................................20190.00900000744000000012000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATG...........................................................................................................................................................................................................................................................................................21182.00822270050000000003000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCA........................................................................................................................................................................................................................................................................................23122.0022000000001100020000
.......................................................................................................................................................CATTGGTGAGGA-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................20119.0019010018000000000000
.......................................................................................................................................................CATTGGTGAGGA-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................22118.0018000020000000016000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT........................................................................................................................................................................................................................................................................................24114.0014112000000000001000
.......................................................................................................................................................CATTGGTGAGGA-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................2117.00700006000000001000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCA........................................................................................................................................................................................................................................................................................2415.00501000000000004000
............................................................................................................................................................................................................GGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................2114.00400004000000000000
.......................................................................................................................................................CATTGGTGAGGA-CATCTCC...............................................................................................................................................................................................................................................................................................................................................1913.00300003000000000000
............................................................................................................................................................................................................GGATTAGTTATCATCAAT............................................................................................................................................................................................................................................................................................1813.00300003000000000000
..............................................................................................................................................................................................................ATTAGTTATCATCAATGCCGGT......................................................................................................................................................................................................................................................................................2212.00200000000000002000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGT..........................................................................................................................................................................................................................................................................................2112.00200000000000002000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCGG.......................................................................................................................................................................................................................................................................................2512.00200002000000000000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCC........................................................................................................................................................................................................................................................................................2412.00202000000000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCT........................................................................................................................................................................................................................................................................................2312.00200000000000002000
............................................................................................................................................................................................................GGATTAGTTATCATCAATGCCG........................................................................................................................................................................................................................................................................................2212.00200002000000000000
........................................................................................................................................................ATTGGTGAGGA-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................2212.00200001000000001000
.........................................................................................................................................................TTGGTGAGGA-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................2112.00200001000000001000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGT..........................................................................................................................................................................................................................................................................................2211.00100000000000001000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCT.........................................................................................................................................................................................................................................................................................2211.00100000000000001000
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCAA.......................................................................................................................................................................................................................................................................................2411.00100000000000001000
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT.........................................................................................................................................................................................................................................................................................2311.00101000000000000000
.......................................................................................................................................................CATTGGTGAGGA-CATCTC................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.........................................................................................................................................................................................................ATTGGATTAGTTATCATCAATG...........................................................................................................................................................................................................................................................................................2211.00100000000000001000
..................................................................................................................................................CGTGGCATTGGTGAGGA-CATCT.................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................TGGAATACC-A-----------------------------------------------------------------------------------------------------ACTCCGGAGTG--------------............................................2111.00100000010000000000
...........................................................................................................................................................................................................TGGATTAGTTATCATC...............................................................................................................................................................................................................................................................................................1611.00100000000001000000
.......................................................................................................................................................CATTGGTGAGGA-CATCTCCAATT...........................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
...............................................................................................................................................................................................................TTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................1811.00100001000000000000
........................................................................................................................................................ATTGGTGAGGA-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..............................................................................................................................................................................................................ATTAGTTATCATCAATGCCGGAT.....................................................................................................................................................................................................................................................................................2311.00110000000000000000
.......................................................................................................................................................CATTGGTGAGGA-CATCTCT...............................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.........................................................................................................................................................................................................ATTGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................2311.00100001000000000000
.......................................................................................................................................................CATTGGTGAGGA-CATCTT................................................................................................................................................................................................................................................................................................................................................1820.50100000000000001000
droSec2
CGAGGA------------------------------------TCGCAGGAAGCA-----------------------------------------------------------------------C-CT-CCGC---ATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGGC-TTA--GT---TC------TCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCAGC-----TGTC--AACTTCGC------------------------------------------------------------GCA--ATGGAATACC-A-----------------------------------------------------------------------------------------------------ACTCCGGAGTG--------------CCGAAAATTCATCC----------CAAGGT--------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................23136.003612555
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................22127.002712015
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC.........................................................................................................................................................................................................................................................................................22115.00158511
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATG...........................................................................................................................................................................................................................................................................................2116.0060411
...........................................................................................................................................................................................................TGGATTAGTTATCATCAATGC..........................................................................................................................................................................................................................................................................................2113.0031110
.............................................................................................................................C-CT-CCGC---ATGCAGTGCCGTGG...................................................................................................................................................................................................................................................................................................................................................................2112.0020101
.....................................................A-----------------------------------------------------------------------C-CT-CCGC---ATGCAGTGCCGTGG...................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...............................................................................................................................CT-CCGC---ATGCAGTGCCGTGG...................................................................................................................................................................................................................................................................................................................................................................2011.0010100
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT.........................................................................................................................................................................................................................................................................................2311.0010100
....................................................CA-----------------------------------------------------------------------C-CT-CCGC---ATGCAGTGCCGTGG...................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCA.........................................................................................................................................................................................................................................................................................2311.0010010
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT........................................................................................................................................................................................................................................................................................2411.0010100
..........................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAA........................................................................................................................................................................................................................................................................................2411.0010010
droYak3
AG--GATCGGGAG-----ATCG--GGAGT-------------TTGGAGGAGGCATTGAAGT----------TCCAGAGGTGAGTGA----------G-----------AA--------------------TCGC---ATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGGG--GA--CC---CG------GCATCATTGGATTAGTTCTCATTAATGCCGGAGCACT--GCACC-----TACC--AACTTCGC------------------------------------------------------------ACG--GT-----------------------TC---------------------------CTATTCCTATTCCGATTCCGATTCGGA------------------------ATCAACCAAGTGCGGACAG--------------CTCAGAGTTCACCC----------CAAGGT--------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC..........................................................................................................................................................................................................................................................................................221138.001388661004410000
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGG..........................................................................................................................................................................................................................................................................................................................................22169.0069031002630000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG...........................................................................................................................................................................................................................................................................................21160.0060730011480000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT............................................................................................................................................................................................................................................................................................20123.0023161000060000
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................21116.0016010001140000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC.........................................................................................................................................................................................................................................................................................23116.0016160000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCT.........................................................................................................................................................................................................................................................................................2318.00870000010000
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG...........................................................................................................................................................................................................................................................................................2215.00510000040000
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT............................................................................................................................................................................................................................................................................................2115.00520000120000
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................2213.00300000120000
..................................................................................................................................TCGC---ATGCAGTGCCACGAC..................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................2112.00200000110000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCCT........................................................................................................................................................................................................................................................................................2411.00110000000000
........................................................................................................................................................ATTGGTGAGGG-CATCTCCTT.............................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGA..........................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGT..........................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAATA...........................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATGA..........................................................................................................................................................................................................................................................................................2311.00100000010000
........................................................................................................................................................ATTGGTGAGGG-CATCTTTT..............................................................................................................................................................................................................................................................................................................................................19200.05100000010000
droEre2
AG--GATCGG------------------------------------AGGAAGCCTTGAAGC----------TCCAGAGGTGTGCCA----------G-----------AA--------------------TCGC---ATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGGG--GA--GC---CA------GCATCATTGGATTAGTTCTCATTAATGCCGGAGCATG--GCACC-----TACG--AACTGAGC--------------------------AT-----------------TTGG-----------GGA--TCGGGATCCC-GG-------------------------------------------------------------ATTCGGA------------------------GTCAACAAACT-------CTTGTCAAACAAACGAGCAGAATTCAACC----------CAAGGT--------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGG..........................................................................................................................................................................................................................................................................................................................................221612.006120070544610
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC..........................................................................................................................................................................................................................................................................................221259.002592030178760
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG...........................................................................................................................................................................................................................................................................................21172.0072201058110
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................21158.0058001046110
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT............................................................................................................................................................................................................................................................................................21137.0037100026100
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG...........................................................................................................................................................................................................................................................................................22123.002300002030
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT............................................................................................................................................................................................................................................................................................20117.00170010970
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................22110.00100000550
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................2115.0050000320
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCT.........................................................................................................................................................................................................................................................................................2314.0040000310
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCA.........................................................................................................................................................................................................................................................................................2313.0030000210
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGGA--.......................................................................................................................................................................................................................................................................................................................................2313.0030000210
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................2012.0020000200
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGGT--.......................................................................................................................................................................................................................................................................................................................................2312.0020000200
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................2012.0020000200
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGT..........................................................................................................................................................................................................................................................................................2212.0020000200
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGGT--T......................................................................................................................................................................................................................................................................................................................................2412.0020000200
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGC..........................................................................................................................................................................................................................................................................................................................................2211.0010000100
.............................................................................................................A--------------------TCGC---ATGCAGTGCCTCGAC..................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................TTGGTGAGGG-CATCTCCAATGT..........................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATT...........................................................................................................................................................................................................................................................................................2111.0010000100
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATC...........................................................................................................................................................................................................................................................................................2111.0010000010
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATGT..........................................................................................................................................................................................................................................................................................2311.0010000100
..........................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC.........................................................................................................................................................................................................................................................................................2311.0010000100
........................................................................................................................................................ATTGGTGAGGG-CATCTCCAATT...........................................................................................................................................................................................................................................................................................................................................2211.0010000100
droWil2
A---------------------------------------------------------------------------------------------------------------------------------------------ACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTG--GAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTT--T--GT-----GAGC--AATATCGT------------------------------------------------------------ATATTGTG---------------------------------------------------------------------------------------------------------------------------------------CGTGCAGTGTATTG----------TGATGTGACACCGTGGACGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGG..........................................................................................................................................................................................................................................................................................221429.004297622412783
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG...........................................................................................................................................................................................................................................................................................211156.0015632111625
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT............................................................................................................................................................................................................................................................................................20132.0032402701
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGGT.........................................................................................................................................................................................................................................................................................23113.001330325
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGA.............................................................................................................................................................................................................................................................................................1918.00870100
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT..........................................................................................................................................................................................................................................................................................2217.00710501
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATCGATG...........................................................................................................................................................................................................................................................................................2214.00410300
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGG.............................................................................................................................................................................................................................................................................................1913.00330000
...............................................................................................................................................................................TTATTG--GAGCCCAACATTGAACACA................................................................................................................................................................................................................................................................................................................2512.00220000
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATCGAT............................................................................................................................................................................................................................................................................................2112.00200200
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGGA.........................................................................................................................................................................................................................................................................................2311.00100100
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGA..........................................................................................................................................................................................................................................................................................2211.00100100
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATCGATGT..........................................................................................................................................................................................................................................................................................2311.00100100
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC..........................................................................................................................................................................................................................................................................................2211.00100100
.........................................................................................................................................................................................................ATTGGATTAGTTCTCATCGATGG..........................................................................................................................................................................................................................................................................................2311.00100100
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGG..........................................................................................................................................................................................................................................................................................2111.00100100
droVir3
TC--AGCCCGCAG------CCA--AGTGTTATCGGTAT-----CG------------------------TTATCG----------TTATCGTTATCGTTATCAGAATTAATTATCGTTGAAGTGCGTT-CTTTG---GTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGAG--CA--------T------ATCACATTGGATTAGTTCTCATCGATGCCGATGCGCT--GTACC-----AGCAACAACAACAGG------AATAGCAACGGAAACAGGAACC-------------------GGAACAGAAACA-------------GG-AA-------AAAGA-----------------------------------------------------------------------------------------------------------------AATTGTGTT--CCC----------CCTGGC--------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................23120902.00209022055284765141097100040002113375143874528142521747598935352122485900000000000000000200124051194100000031010
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG...........................................................................................................................................................................................................................................................................................2114974.00497420012052279560620000000000541001240127597603329841346101027150000000000001000000007700383468420100113
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC..........................................................................................................................................................................................................................................................................................2214673.00467344351214924804600000000005040040001992635305104302261001354100000000000000000001056021915181662201222
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT............................................................................................................................................................................................................................................................................................201870.008701030074025138000010000090006200012110337107096000001480000000000000000000001100012010010000001
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCC.........................................................................................................................................................................................................................................................................................231546.005461382101900020000000000640010000443424103024000014200000000000000000400040000001541674200000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCC.........................................................................................................................................................................................................................................................................................221496.004960030070104000000001012001000114695441340600000160000000000000100115000101022200000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGC..........................................................................................................................................................................................................................................................................................211421.00421009103030000000000001400000001059035132081000010000000000000000001000100013100000000111
......................................................................................................................................................CGATTGATGATAG-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................211325.003250010080000000000000018000000086662998050000013000000000000000000000100000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................221249.002490020010101000000000013000000065671961060000012000000000000000000000100000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................231231.0023110200208130000000000900010006438236103000009000000000000000000010100000040000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................221192.0019200100109050000000000200000005139195602000007000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATG...........................................................................................................................................................................................................................................................................................201168.0016800500501010000000000200000004337144602000003000000000000000000000002022000000001110
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT..........................................................................................................................................................................................................................................................................................221164.001640000040000000000000021000000025285330240000022000000000000000000000200000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATC...........................................................................................................................................................................................................................................................................................211159.0015912000020200600000000002000000009149350100000119000000000000000001000100000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................211154.00154000001000000000000003000000036321345070000016000000000000000000000000100000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGT.......................................................................................................................................................................................................................................................................................241130.0013000000700010000000000900000002828103507000005000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCC........................................................................................................................................................................................................................................................................................24192.009218010020000000000000017000000065617030000014000000000000000001000100000010000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTC......................................................................................................................................................................................................................................................................................25174.0074000003100000000000009000000081262009000005000000000000000000000100000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGA.............................................................................................................................................................................................................................................................................................19170.007070000700030000000000700000003316070000016000000000000000000000100011024100000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCT.........................................................................................................................................................................................................................................................................................23170.00704010020201000000000050000000109410050000010000000000000000001000100000121000000010
........................................................................................................................................................ATTGATGATAG-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................20161.00610000010000000000000020000000181651501000003000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCC...............................................................................................................................................................................................................................................................................................................................................20158.00580000030101000000000000000000111571602000001000000000000000000000000000000100000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCC........................................................................................................................................................................................................................................................................................23152.005200210200000000000000300000007891500000003000000000000000000000100000000000000001
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTC........................................................................................................................................................................................................................................................................................24148.004800000400010000000000600000009429020000011000000000000000000000000000000000000000
...............................................................................................................................T-CTTTG---GTGCAGCCCCTCG....................................................................................................................................................................................................................................................................................................................................................................19143.004300001201003000000000050000000952600000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCT........................................................................................................................................................................................................................................................................................23143.0043000001000000000000007000000012251003000000000000000000000003000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................19140.004000100200000000100000100000008116901000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................24138.003810100100000000000000500000007421104000002000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCA.........................................................................................................................................................................................................................................................................................23136.00361010001000000000000040000000244903000001000000000000000000000100021000000000011
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCT........................................................................................................................................................................................................................................................................................24135.00359000000000000000000050000000514700000002000000000000000001000000000010000000000
......................................................................................................................................................CGATTGATGATAG-CATCTC................................................................................................................................................................................................................................................................................................................................................19135.003540000200000000000000000000006811100000000000000000000000000000000000030000000000
..............................................................................................................................TT-CTTTG---GTGCAGCCCCTCG....................................................................................................................................................................................................................................................................................................................................................................20133.003300000304030000000000500000003211101000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAATGT..........................................................................................................................................................................................................................................................................................................................................23133.003300000200000000000000000000009102501000004000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGAT............................................................................................................................................................................................................................................................................................19133.00330010000100000000000010000001980603000002000000000000000000000000000100000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATT...........................................................................................................................................................................................................................................................................................21121.00210000000101000000000050000000611005000001000000000000000000000000000000000000000
............................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................22120.00200020020000000000000020000000323600000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAT.............................................................................................................................................................................................................................................................................................................................................22114.00140000000000000000000020000000370200000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCA........................................................................................................................................................................................................................................................................................23113.00130000000001000000000000000000331200001002000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAATT...........................................................................................................................................................................................................................................................................................................................................24111.00110000000000000000000000000000310700000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GATTAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................21111.00110000000000000000000020000000250000000001000000000000000000000000000000000100000
................................................................................................................................................................................................................TAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................18111.00110000000000000000000000000000032104000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATA...........................................................................................................................................................................................................................................................................................21111.00110000000000000000000040000000100400000001000000000000000000000000000001000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCT.........................................................................................................................................................................................................................................................................................22110.00100000010000000000000010000000122100000002000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGA..........................................................................................................................................................................................................................................................................................2219.0090000000400000000000000000000111101000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................1919.0090000010000000000000010000000220101000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCAA........................................................................................................................................................................................................................................................................................2418.0080000003000000000000000000000000110010000000000000000000000000000011000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAATC...........................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000001000000121200000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATTAGTTCTCATCGATGCCG........................................................................................................................................................................................................................................................................................2017.0071000000000000000000010000000300101000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT..........................................................................................................................................................................................................................................................................................2117.0070000020000000000000000000000120101000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCC..............................................................................................................................................................................................................................................................................................................................................2117.0070000030000000000000010000000111000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTT........................................................................................................................................................................................................................................................................................2417.0071000000000000000000000000000220000000002000000000000000000000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAATC...........................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000010000000202100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCGA.......................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000310200000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCA........................................................................................................................................................................................................................................................................................2416.0060000000000000000000010000000000000000001000000000000000000000000000000031000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGA.......................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000231000000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAATGTC--.......................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000010000000200200000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGA.............................................................................................................................................................................................................................................................................................1815.0050000000000000000000010000000100002000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGC.......................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000220100000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAATT...........................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000310100000000000000000000000000000000000000000000000
.............................................................................................................................GTT-CTTTG---GTGCAGCCCCTCG....................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000200300000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCC...............................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000100400000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTCT.....................................................................................................................................................................................................................................................................................2614.0040000000001000000000000000000111000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCTC........................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000010200000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTCC.....................................................................................................................................................................................................................................................................................2614.0040000010000000000000010000000000100000001000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAC.............................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000010100000001000000000000000000000100000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTCC.......................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000001000000000000000000000000000000300000000
........................................................................................................................................................ATTGATGATAG-CATCTCCAATGA..........................................................................................................................................................................................................................................................................................................................................2314.0040000010000000000000000000000100200000000000000000000000000000000000000000000000
.......................................................................................................................................................GATTGATGATAG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000310000000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAAA............................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000210000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTC........................................................................................................................................................................................................................................................................................2413.0030000000000000000000010000000000100000001000000000000000000000000000000000000000
............................................................................................................................CGTT-CTTTG---GTGCAGCCCCTCG....................................................................................................................................................................................................................................................................................................................................................................2213.0030000000001000000000000000000101000000000000000000000000000000000000000000000000
.......................................................................................................................................................GATTGATGATAG-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000200100000000000000000000000000000000000000000000000
....................................................................................................................................................CGCGATTGATGATAG-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000010000000200000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTCT.......................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000001001000000000000000000000000000100000000000000000
...................................................................................................................................................TCGCGATTGATGATAG-CATCTCC...............................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000210000000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCT.................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000010000001000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCA.........................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000100100000000000000000000000000000000000000000000010
........................................................................................................................................................ATTGATGATAG-CATCTCCAATTT..........................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000201000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATCT..........................................................................................................................................................................................................................................................................................2213.0030000000000000000000010000000000100000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATC...........................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000020100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GATTAGTTCTCATCGATGCCGA.......................................................................................................................................................................................................................................................................................2212.0020000000100000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATAA..........................................................................................................................................................................................................................................................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTGATGATAG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAATCT..........................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTTC........................................................................................................................................................................................................................................................................................2312.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATTAGTTCTCATCGATGCCGAT......................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
..................................................................................................................................TTTG---GTGCAGCCCCTCGCG..................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATTT..........................................................................................................................................................................................................................................................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCCT.......................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTT................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCGT.......................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000101000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GGATTAGTTCTCATCGATGCC.........................................................................................................................................................................................................................................................................................2112.0020010000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................TCGCGATTGATGATAG-CATCT.................................................................................................................................................................................................................................................................................................................................................2112.0020000000001000000000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTT.........................................................................................................................................................................................................................................................................................2312.0020000010000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................CTTTG---GTGCAGCCCCTCG....................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTGATGATAG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................2012.0020000010000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAATGA..........................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.......................................................................................................................................................GATTGATGATAG-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
.................................................................................................................................CTTTG---GTGCAGCCCCTCGCG..................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTAGTTCTCATCGATGCCT........................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000002000000000000000000000000000000000000000
........................................................................................................................................................ATTGATGATAG-CATCTCCC..............................................................................................................................................................................................................................................................................................................................................1921.5030000000000000000000010000000000100000001000000000000000000000000000000000000000
.........................................................................................................................................................TTGATGATAG-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................CGATTGATGATAG-CATCTCCAAAT...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................TCGCGATTGATGATAG-CATCTCCA..............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................GATTGATGATAG-CATCTCCAATT...........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................TGATGATAG-CATCTCCAA.............................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
droMoj3
TC--AAACAACTG-----GCCCAAAGTGTTATCGTTAT-----CG------------------------TTATCGCTAG------C----------GAC--------------------------GCT--TCGG---GTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGAG--TA--T------------TTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCT--GTATC-----AGCAACAACAACAAC----------------------------------------------------------------ATG----------------------------------------------------------------------------AG------------------------TTAAACGAAATG-AACCAG--------------TTCGTTGTTCTGG-----------CCCAGC--------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCG........................................................................................................................................................................................................................................................................................231315.00315160101297
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT..........................................................................................................................................................................................................................................................................................221194.0019481221180
........................................................................................................................................................ATTGATGAAAG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................221100.001008010091
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG...........................................................................................................................................................................................................................................................................................21160.00601000059
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTC.........................................................................................................................................................................................................................................................................................23140.00401001038
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTC.........................................................................................................................................................................................................................................................................................22114.00140000014
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT..........................................................................................................................................................................................................................................................................................21111.0011101009
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTT.........................................................................................................................................................................................................................................................................................23110.00100000010
........................................................................................................................................................ATTGATGAAAG-CATCTCCAATGT..........................................................................................................................................................................................................................................................................................................................................23110.0010000109
............................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCGTC......................................................................................................................................................................................................................................................................................2419.009000009
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCT........................................................................................................................................................................................................................................................................................2417.007000007
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT............................................................................................................................................................................................................................................................................................2016.006000006
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTC........................................................................................................................................................................................................................................................................................2415.005000005
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGTC......................................................................................................................................................................................................................................................................................2514.004000004
............................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCG........................................................................................................................................................................................................................................................................................2214.004300001
......................................................................................................................................................CGATTGATGAAAG-CATCTCCAAT............................................................................................................................................................................................................................................................................................................................................2313.003000003
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGC.......................................................................................................................................................................................................................................................................................2412.002000002
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGT.......................................................................................................................................................................................................................................................................................2412.002000002
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTT........................................................................................................................................................................................................................................................................................2412.002000002
........................................................................................................................................................ATTGATGAAAG-CATCTCCAATGA..........................................................................................................................................................................................................................................................................................................................................2312.002000002
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC..........................................................................................................................................................................................................................................................................................2212.002000002
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATG...........................................................................................................................................................................................................................................................................................2012.002000002
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCG........................................................................................................................................................................................................................................................................................2412.002000002
........................................................................................................................................................ATTGATGAAAG-CATCTCCAATGTC--.......................................................................................................................................................................................................................................................................................................................................2411.001000001
........................................................................................................................................................ATTGATGAAAG-CATCTCCAATT...........................................................................................................................................................................................................................................................................................................................................2211.001000001
..............................................................................................................................................................................................................ATTAGTTCTCATCGATGTCG........................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTA.........................................................................................................................................................................................................................................................................................2311.001000001
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTTC.......................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................CGATTGATGAAAG-CATCTCC...............................................................................................................................................................................................................................................................................................................................................2011.001000100
............................................................................................................................................................................................................GGATTAGTTCTCATCGATGTC.........................................................................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTCC.......................................................................................................................................................................................................................................................................................2511.001000001
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCT........................................................................................................................................................................................................................................................................................2311.001000001
...........................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCA........................................................................................................................................................................................................................................................................................2311.001000010
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCTC.......................................................................................................................................................................................................................................................................................2511.001000001
.........................................................................................................................................................TTGATGAAAG-CATCTCCAATG...........................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCC........................................................................................................................................................................................................................................................................................2411.001000001

Generated: 10/20/2015 at 07:48 PM