ID:

dan_1272

 Coordinate:

scaffold_13111:1034410-1034560 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.6 -34.6 -34.5

Flybase annnotation

CDS [Dana\GF15897-cds]; exon [dana_GLEANR_16724:1]; intron [Dana\GF15897-in]

No Repeatable elements found

mature
  1. scaffold_6269:1025-1051 -
  2. scaffold_8769:973-999 -
  3. scaffold_11915:750-776 -
  4. scaffold_12554:5176-5202 -
  5. scaffold_13021:5317-5343 -
  6. scaffold_13034:1854130-1854156 -
  7. scaffold_13034:1856312-1856338 -
  8. scaffold_13079:567878-567904 -
  9. scaffold_13079:575776-575802 -
  10. scaffold_13111:245292-245318 -
  11. scaffold_13111:953782-953808 -
  12. scaffold_13111:1011076-1011102 -
  13. dan_1272  scaffold_13111:1034421-1034447 -
  14. scaffold_13111:1042665-1042691 -
  15. scaffold_13250:860722-860748 -
  16. scaffold_13250:869858-869884 -
  17. scaffold_13280:208858-208884 -
  18. scaffold_13280:215028-215054 -
  19. scaffold_13339:310097-310123 -
  20. scaffold_13339:317821-317847 -
  21. scaffold_430:500-526 +
  22. scaffold_833:786-812 +
  23. scaffold_10393:1652-1678 +
  24. scaffold_12928:735269-735295 +
  25. scaffold_13099:1569004-1569030 +
  26. scaffold_13099:1577866-1577892 +
  27. scaffold_13099:2460073-2460099 +
  28. scaffold_13099:2467517-2467543 +
  29. scaffold_13165:4985-5011 +
  30. scaffold_13258:846144-846170 +
  31. scaffold_13258:851411-851437 +
  32. scaffold_13258:1052587-1052613 +
  33. scaffold_13260:871010-871036 +
  34. scaffold_13260:1000997-1001023 +
  35. scaffold_13339:2753416-2753442 +
  36. scaffold_13339:3038764-3038790 +
  37. scaffold_13339:3755294-3755320 +
  38. scaffold_13339:3794782-3794808 +
  39. scaffold_13417:5782152-5782178 +
  40. scaffold_13417:6506326-6506352 +
star
  1. scaffold_6269:1139-1163 -
  2. scaffold_8769:1087-1111 -
  3. scaffold_11915:864-888 -
  4. scaffold_12554:5290-5314 -
  5. scaffold_13021:5431-5455 -
  6. scaffold_13034:1854244-1854268 -
  7. scaffold_13034:1856426-1856450 -
  8. scaffold_13079:567992-568016 -
  9. scaffold_13079:575890-575914 -
  10. scaffold_13111:245406-245430 -
  11. scaffold_13111:254631-254655 -
  12. scaffold_13111:953896-953920 -
  13. scaffold_13111:1011190-1011214 -
  14. dan_1272  scaffold_13111:1034535-1034559 -
  15. scaffold_13111:1042779-1042803 -
  16. scaffold_13250:860836-860860 -
  17. scaffold_13250:869972-869996 -
  18. scaffold_13280:208972-208996 -
  19. scaffold_13280:215142-215166 -
  20. scaffold_13339:317935-317959 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGTTCGGAATAGGCTGATCTCCCACTCCAGTTCTATACGCGGTGTCAGCGTGTGTGGCGTCGGCGTGTGTGGTGTCGGCAGATGTGGAGTCAGCTTTCCCGCAACACTTTAGTCAGCGTACATAGTTGCACACTTGTGACTTAGTTGCACTCTTGTGACATACCCGGATGTACTTGAACCCACAGCACTTGAATATTGGGAATTGTGCCTATGTTGTGGATTCGAGTTCAGGGCGTAGTGGTAGGGGGCG
***************************************************..(((((..(((((((.((.(((((..(((.....((((((((((....(((((.......((((((.......)))).))..)))))....))))).))))))))...))))))).))))...)))..))))).....************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V055
head
 V106
head
.............................................TCAGCGTGTGTGGCGTCGGCGTGTG..................................................................................................................................................................................... 25 0 20 1.25 25 25 0 0 0 0 0
..................................................................................................................................................................................................................TATGTTGTGGATTCGAGTTCATGGC................ 25 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................TGGATTCGAGTTCAGGGCGTAGTGG......... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................CCCGGATGTACTTGAACCCACAGCACT............................................................. 27 0 20 0.60 12 12 0 0 0 0 0
...................................................................................................................................................................CCCGGATGTACTTGAACCCACAGCAC.............................................................. 26 0 20 0.50 10 10 0 0 0 0 0
.....................................................................................................................................................................CGGATGTACTTGAACCCACAGCACTTG........................................................... 27 0 20 0.45 9 9 0 0 0 0 0
..........TAGGCTGATCTCCCACTCCAGTTCTA....................................................................................................................................................................................................................... 26 0 18 0.39 7 7 0 0 0 0 0
.........................................................................................................................................TGACTTAGTTGCACTCTTGTGACATA........................................................................................ 26 0 20 0.35 7 7 0 0 0 0 0
...................................................TGTGTGGCGTCGGCGTGTGTGGTGT............................................................................................................................................................................... 25 0 20 0.30 6 6 0 0 0 0 0
..................................................................................................................................................................ACCCGGATGTACTTGAACCCACAGCAC.............................................................. 27 0 20 0.30 6 6 0 0 0 0 0
..........................TCCAGTTCTATACGCGGTGTCAGC......................................................................................................................................................................................................... 24 0 20 0.30 6 3 2 1 0 0 0
....TCGGAATAGGCTGATCTCCCACTCCAG............................................................................................................................................................................................................................ 27 0 18 0.28 5 5 0 0 0 0 0
...........................................................................TCGGCAGATGTGGAGTCAGCTTTCCCGC.................................................................................................................................................... 28 0 20 0.25 5 3 2 0 0 0 0
..........................TCCAGTTCTATACGCGGTGTCAGCGTG...................................................................................................................................................................................................... 27 0 20 0.25 5 5 0 0 0 0 0
...................................................................................................................................................................CCCGGATGTACTTGAACCCACAGCACC............................................................. 27 1 20 0.25 5 0 5 0 0 0 0
....TCGGAATAGGCTGATCTCCCACTCCAGT........................................................................................................................................................................................................................... 28 0 18 0.22 4 4 0 0 0 0 0
...........................................................................TCGGCAGATGTGGAGTCAGCTTTCCCG..................................................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0 0
.............................................TCAGCGTGTGTGGCGTCGGCGTGTGTG................................................................................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0 0
..................................................................................................................................................................ACCCGGATGTACTTGAACCCACAGCACTT............................................................ 29 0 20 0.20 4 4 0 0 0 0 0
..................TCTCCCACTCCAGTTCTATACGCGGTG.............................................................................................................................................................................................................. 27 0 17 0.18 3 3 0 0 0 0 0
....................TCCCACTCCAGTTCTATACGCGGTG.............................................................................................................................................................................................................. 25 0 17 0.18 3 3 0 0 0 0 0
...............TGATCTCCCACTCCAGTTCTATACGCGG................................................................................................................................................................................................................ 28 0 18 0.17 3 3 0 0 0 0 0
...................................................TGTGTGGCGTCGGCGTGTGTGG.................................................................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0 0
........................................................................................................................................................................ATGTACTTGAACCCACAGCACT............................................................. 22 0 20 0.15 3 0 3 0 0 0 0
.................................................................................GATGTGGAGTCAGCTTTCCCGCAACACTT............................................................................................................................................. 29 0 20 0.15 3 3 0 0 0 0 0
....................................................................................................................................................................................................TTGGGAATTGTGCCTATGTTGTGGAT............................. 26 0 20 0.15 3 2 0 0 1 0 0
................................................................................................TTCCCGCAACACTTTAGTCAGCGTACA................................................................................................................................ 27 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................................................TGTACTTGAACCCACAGCACTTGAAT........................................................ 26 0 20 0.15 3 3 0 0 0 0 0
..............................................................................................................................................TAGTTGCACTCTTGTGACATACCCGG................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0
..........................................................................................................................................................TGTGACATACCCGGATGTACTTGAACC...................................................................... 27 0 20 0.15 3 3 0 0 0 0 0
...........................................................................................................................................................................TACTTGAACCCACAGCACTTGAATATTG.................................................... 28 0 20 0.15 3 3 0 0 0 0 0
.................................................................................GATGTGGAGTCAGCTTTCCCGCAACAC............................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0
....................TCCCACTCCAGTTCTATACGCGGTGTC............................................................................................................................................................................................................ 27 0 17 0.12 2 2 0 0 0 0 0
.......................CACTCCAGTTCTATACGCGGTGTCAGCG........................................................................................................................................................................................................ 28 0 17 0.12 2 2 0 0 0 0 0
..........TAGGCTGATCTCCCACTCCAGTTC......................................................................................................................................................................................................................... 24 0 18 0.11 2 2 0 0 0 0 0
..............................................CAGCGTGTGTGGCGTCGGCGTGTG..................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
..................................................................TGTGTGGTGTCGGCAGATGTGGAGT................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0 0
.......................................................................................GAGTCAGCTTTCCCGCAACACTTTAGT......................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
..GTTCGGAATAGGCTGATCTCCCACC................................................................................................................................................................................................................................ 25 1 20 0.10 2 0 2 0 0 0 0
....................................................................TGTGGTGTCGGCAGATGTGGAGTC............................................................................................................................................................... 24 0 20 0.10 2 0 1 1 0 0 0
.........................................................................................................................................TGACTTAGTTGCACTCTTGTGACATACCC..................................................................................... 29 0 20 0.10 2 1 1 0 0 0 0
.....................................................................................................................................................................CGGATGTACTTGAACCCACAGCACTTGAA......................................................... 29 0 20 0.10 2 2 0 0 0 0 0
....TCGGAATAGGCTGATCTCCCACTCC.............................................................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................................................................TTGGGAATTGTGCCTATGTTGTGGA.............................. 25 0 20 0.10 2 1 0 1 0 0 0
...TTCGGAATAGGCTGATCTCCCACT................................................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
....................TCCCACTCCAGTTCTATACGCGGTGTCG........................................................................................................................................................................................................... 28 1 17 0.06 1 1 0 0 0 0 0
.......................CACTCCAGTTCTATACGCGGTGTCAGC......................................................................................................................................................................................................... 27 0 17 0.06 1 1 0 0 0 0 0
.....................CCCACTCCAGTTCTATACGCGGTGTCA........................................................................................................................................................................................................... 27 0 17 0.06 1 1 0 0 0 0 0
.....................CCCACTCCAGTTCTATACGCGGTGTCAGC......................................................................................................................................................................................................... 29 0 17 0.06 1 1 0 0 0 0 0
..................TCTCCCACTCCAGTTCTATACGCGGTGTA............................................................................................................................................................................................................ 29 1 17 0.06 1 1 0 0 0 0 0
..................CCTCCCACTCCAGTTCTATACGCGGTG.............................................................................................................................................................................................................. 27 1 17 0.06 1 1 0 0 0 0 0
..................TCTCCCACTCCAGTTCTATACGCGGTGT............................................................................................................................................................................................................. 28 0 17 0.06 1 1 0 0 0 0 0
..................TCTCCCACTCCAGTTCTATACGCGG................................................................................................................................................................................................................ 25 0 18 0.06 1 1 0 0 0 0 0
......GGAATAGGCTGATCTCCCACTCCAGT........................................................................................................................................................................................................................... 26 0 18 0.06 1 1 0 0 0 0 0
...........AGGCTGATCTCCCACTCCAGTTCTATAC.................................................................................................................................................................................................................... 28 0 18 0.06 1 1 0 0 0 0 0
...........AGGCTGATCTCCCACTCCAGTTCTA....................................................................................................................................................................................................................... 25 0 18 0.06 1 1 0 0 0 0 0
....TCGGAATAGGCTGATCTCCCACTCCAGTT.......................................................................................................................................................................................................................... 29 0 18 0.06 1 1 0 0 0 0 0
.......GAATAGGCTGATCTCCCACTCCAGTTC......................................................................................................................................................................................................................... 27 0 18 0.06 1 1 0 0 0 0 0
..........TAGGCTGATCTCCCACTCCAGTTCTAT...................................................................................................................................................................................................................... 27 0 18 0.06 1 1 0 0 0 0 0
..........TAGGCTGATCTCCCACTCCAGTT.......................................................................................................................................................................................................................... 23 0 18 0.06 1 0 1 0 0 0 0
....................TCCCACTCCAGTTCTATACGCGG................................................................................................................................................................................................................ 23 0 18 0.06 1 0 1 0 0 0 0
...............TGATCTCCCACTCCAGTTCTA....................................................................................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0 0 0
...........AGGCTGATCTCCCACTCCAGTTCTATA..................................................................................................................................................................................................................... 27 0 18 0.06 1 1 0 0 0 0 0
..........TAGGCTGAGCTCCCACTCCAGTTCTATAC.................................................................................................................................................................................................................... 29 1 18 0.06 1 1 0 0 0 0 0
................GATCTCCCACTCCAGTTCTATACGCG................................................................................................................................................................................................................. 26 0 18 0.06 1 1 0 0 0 0 0
..........................................................................................TCAGCTTTCCCGCAACACTTTAGTC........................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................CCCGGATGTACTTGAACCCAC................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................CCCGGATGCACTTGAACCTACAGCACT............................................................. 27 2 20 0.05 1 1 0 0 0 0 0
.............................................TCAGCGTGTGTGGCGTCGGCGTGTGCG................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................GCACTTGAATATTGGGAATTGTGCCTA....................................... 27 0 20 0.05 1 1 0 0 0 0 0
.........................CTCCAGTTCTATACGCGGTGTCAGCGTG...................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................AGTTGCACTCTTGTGACATACCCGG................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TACCCGGATGTACTTGAACCCACAGCACC............................................................. 29 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................ACATACCCGGATGTCCTTGAACCCAC................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
.....................................................TGTGGCGTCGGCGTGTGTGGTGTC.............................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................TGACATACCCGGATGTACTTGAACCC..................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................ATTGGGAATTGTGCCTATGTTGTGGAT............................. 27 0 20 0.05 1 1 0 0 0 0 0
..GTTCGGAATAGGCTGATCTCCCACTC............................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................CGCTTGTGACATACCCGGATGTACC............................................................................ 25 2 20 0.05 1 0 1 0 0 0 0
....................................................................................................CGCAACACTTTAGTCAGCGTACATAGC............................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................TGTACTTGGACCCACAGCACTTGAATA....................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTGAATATTGGGAATTGTGCC......................................... 21 0 20 0.05 1 0 1 0 0 0 0
..........................TCCAGTTCTATACGCGGTGTCAG.......................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...TACGGAATAGGCTGATCTCCCACT................................................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................CACTTGAATATTGGGAATTGTGCC......................................... 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TACCCGGATGCACTTGAACCCACAGCACT............................................................. 29 1 20 0.05 1 0 1 0 0 0 0
...........................................TGTCAGCGTGTGTGGCGTCGG........................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................TGTGACATACCCGGATGTACTTGAACCCA.................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................CAGCTTTCCCGCAACACTTTAGTCA....................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................TGGAACCCACAGCACTTGAATATTGGC.................................................. 27 2 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................................TATTGGGAATTGTGCCTATGTTGTGG............................... 26 0 20 0.05 1 1 0 0 0 0 0
....................................................................TTTGGTGTCGGCAGATGTGGAGTC............................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
.....................................................TGTGGCGTCGGCGTGTGTGGTGTT.............................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................TGGTTGCACACTTGTGACTTAGTTGC...................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................................TGGGAATTGTGCCTATGTTGTGGA.............................. 24 0 20 0.05 1 1 0 0 0 0 0
.............................................TCAGCGTGCGTGGCGTCGGCGTT....................................................................................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
............GGCTGATCTCCCCCTAGAGT........................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
................................................................................................TTCCCGCAACACTTTAGTCAGCGTAC................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................TCTTGTGACATACCCGGATGTACTTG.......................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................TTGTGACTCAGTTGCACTCTTGTGACA.......................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
......................................................................TGGTGTCGGCAGATGTGGAGTCAGCTT.......................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
............GGCTGATCTCCCCCAACAGT........................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
....................................TACGCGGTGTCAGCGTGTGTGGCGTCG............................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TACCCGGATGTACTTGAACCCA.................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
......................................................GTGGCGTCTGCGTGTGTGGT................................................................................................................................................................................. 20 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................CGCTCTTGTGACATACCCGGATGTACT............................................................................ 27 1 20 0.05 1 0 1 0 0 0 0
.............................................TCAGCGTGTGTGGCGTCGGC.......................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................TACCCGGACGTACTTGAACCCACAGCAC.............................................................. 28 1 20 0.05 1 1 0 0 0 0 0
..........................TCCAGTTCGATACGCGGTGTCAGCGTG...................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TTTGGGTTCCGGGCGTAGT........... 19 3 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................................TGACTTAGTTGCACTCTTGTGACATAAA...................................................................................... 28 2 20 0.05 1 1 0 0 0 0 0
................................TCTATACGCGGTGTCAGCGTGTGTGGCG............................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTGAATATTGGGAATTGTGCCTATGTT................................... 27 0 20 0.05 1 0 0 0 1 0 0
...................................................................................TGTGGAGTCAGCTTTCCCGCAACAC............................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................ATTGTGCCTATGTTGTGGATT............................ 21 0 20 0.05 1 0 0 0 0 0 1
.................................................................................................................................................................TACCCAGATGAACTTGAAC....................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
..........................TCCAGTTCTATACGCGGTGTCAGCGT....................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
..............................................................GGCAAGTCTGGTGTCGGCAG......................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
.................................................................................................................................................................TACCCGGATGTACTTGAACCCACAGCACT............................................................. 29 0 20 0.05 1 0 0 0 1 0 0
...........AGACTGACCTCCCACACCAG............................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................................TTATTTAGTTGCACTCTTGTGACATA........................................................................................ 26 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................TTCAGGGCGTAGTGGTAGGGG... 21 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................TGGAATATTGGGAATTGTGCC......................................... 21 1 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................CTCAGGGCGTAGTGGTAGGGGGC. 23 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................GGATGTACTTGAACCCACAGCA............................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................GCACTTGAATATTGGGAATTGTGCC......................................... 25 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................TCAGCTTTCCCGCAACACTTTAGTCA....................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...............................TTCTATACGCGGTGTCAGCGTGTGT................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................ACTTGAATATTGGGAATTGTGCCTA....................................... 25 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................TGACATAACCGGATGTACTTGAACC...................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................TAGTTGCAATCTTGTGACATACCCG.................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
...TTCGGAATAGGCTGATCTCCCACTC............................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................TCTTGTGACATACCCGGATGTACT............................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................TGTACTTGAACCCACAGCACTTGAAA........................................................ 26 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................CACTCTTGTGACATACCCGGATGTACT............................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
..GTTCGGAAGAGGCTGATCTCCCACTCC.............................................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................AGCGTACATAGTTGCACACTTGTGA............................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................CACTTGAATATTGGGAATTGTGCCTA....................................... 26 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................TGCACTCTTGTGACATACCCGGATGTACT............................................................................ 29 0 20 0.05 1 0 1 0 0 0 0
..................................................................TGTGTGGTGTCGGCAGATGTGGA.................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
.........................................................................TGTCGGCAGATGTGGAGTCAGCT........................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................CCCGCAACACTTTAGTCAGCGTACATAGT............................................................................................................................ 29 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................ACACTTGTGACTTAGTTGCACTCTTG............................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................TGACATACCCGGATGTACTTGAACCCAC................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
....................................TACGCGGTATCAGCGTGTGTGGCGTCG............................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
..GTTCGGAATAGGCTGATCTCCCACT................................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CAGGGCGTAGTGGTAGGGGGC. 21 0 20 0.05 1 1 0 0 0 0 0
...............................................AGCGTGTGTGGCGTCGGCGTGTGTGG.................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................GCAGCTTTCCCGCAACACTTTAGTCAG...................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................TATTGGGAATTGTGCCTATG..................................... 20 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................CTTGTGACATACCCGGATGTA.............................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................TCTTGTGAGATACCCGGATGT............................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
.............................................TCAGCGTGCGTGGCGTCGGCG......................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................CACTCTTGTGACATACCCGGATGTACTTG.......................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................ACAGCACTTGAATATTGGGA................................................. 20 0 20 0.05 1 0 0 1 0 0 0
.............................................TCAGCGTGTGTGGCGTCGGCGC........................................................................................................................................................................................ 22 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GCCAAGCCTTATCCGACTAGAGGGTGAGGTCAAGATATGCGCCACAGTCGCACACACCGCAGCCGCACACACCACAGCCGTCTACACCTCAGTCGAAAGGGCGTTGTGAAATCAGTCGCATGTATCAACGTGTGAACACTGAATCAACGTGAGAACACTGTATGGGCCTACATGAACTTGGGTGTCGTGAACTTATAACCCTTAACACGGATACAACACCTAAGCTCAAGTCCCGCATCACCATCCCCCGC
*************************************************************..(((((..(((((((.((.(((((..(((.....((((((((((....(((((.......((((((.......)))).))..)))))....))))).))))))))...))))))).))))...)))..))))).....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
.............................................................................................................................................................................GAACTTGGGTGTCGTGAACTTATAAC.................................................... 26 0 20 0.55 11 11 0 0 0 0 0
............................GTCAAGATATGCGCCACAGTCGCACAC.................................................................................................................................................................................................... 27 0 20 0.45 9 9 0 0 0 0 0
...........................GGTCAAGATATGCGCCACAGTCGCACAC.................................................................................................................................................................................................... 28 0 20 0.45 9 8 1 0 0 0 0
.............................................................................................CGAAAGGGCGTTGTGAAA............................................................................................................................................ 18 0 20 0.35 7 5 0 0 0 2 0
..............................................................................................................................................................................AACTTGGGTGTCGTGAACTTATAAC.................................................... 25 0 20 0.35 7 7 0 0 0 0 0
..............................................................CCGCACACACCACAGCCGTCTACACCT.................................................................................................................................................................. 27 0 20 0.20 4 1 3 0 0 0 0
..............................CAAGATATGCGCCACAGTCGCACAC.................................................................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
.............................................................................CCGTCTACACCTCAGTCGAAAGGGCGT................................................................................................................................................... 27 0 20 0.15 3 1 2 0 0 0 0
...........................GGTCAAGATATGCGCCACAGTCGCACA..................................................................................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0
....................AGGGTGAGGTCAAGATATGCG.................................................................................................................................................................................................................. 21 0 18 0.11 2 1 1 0 0 0 0
..................AGAGGGTGAGGTCAAGATATGCG.................................................................................................................................................................................................................. 23 0 18 0.11 2 2 0 0 0 0 0
...........................GGTCAAGATATGCGCCACAGTCGCAC...................................................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................................GAACTTGGGTGTCGTGAACTTAT....................................................... 23 0 20 0.10 2 2 0 0 0 0 0
...........................................................................AGCCGTCTACACCTCAGTCGAAAG........................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................................................GGTGTCGTGAACTTATAACCCTTA............................................... 24 0 20 0.10 2 0 2 0 0 0 0
...............................................................................................................................................................GTATGGGCCTACATGAACTTGGGTG................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................................................TTGGGTGTCGTGAACTTATAAC.................................................... 22 0 20 0.10 2 0 1 0 1 0 0
..............................................................................CGTCTACACCTCAGTCGAAAGGGCGT................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0 0 0
..............................................................................................................................................................................AACTTGGGTGTCGTGAACTTA........................................................ 21 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................TGAAATCAGTCGCATGTATCAAC.......................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0
................................................................................................................................................CAACGTGAGAACACTGTATGGGCCTACAT.............................................................................. 29 0 20 0.10 2 2 0 0 0 0 0
............................................................................................TCGAAAGGGCGTCGTGAA............................................................................................................................................. 18 1 20 0.10 2 1 0 0 0 1 0
...................................................................................................................................................CGTGAGAACACTGTATGGGCCTACAT.............................................................................. 26 0 20 0.10 2 0 1 0 1 0 0
...................................................................................................................................................CGTGAGAACACTGTATGGGCCTAC................................................................................ 24 0 20 0.10 2 0 1 1 0 0 0
...........................................................................................TTCGAAAGGGCGTCGTGAA............................................................................................................................................. 19 2 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................................................................................AAGCTCAAGTCCCGCATCATCATCC..... 25 1 13 0.08 1 1 0 0 0 0 0
....................AGGGTGAGGTCAAGATATGCGCCA............................................................................................................................................................................................................... 24 0 17 0.06 1 1 0 0 0 0 0
..............GACTAGAGGGTGAGGTCAAGAT....................................................................................................................................................................................................................... 22 0 18 0.06 1 1 0 0 0 0 0
...............ACTAGAGGGTGAGGTCAA.......................................................................................................................................................................................................................... 18 0 18 0.06 1 0 0 1 0 0 0
...............ACTAGAGGGTGAGGTCAAGA........................................................................................................................................................................................................................ 20 0 18 0.06 1 1 0 0 0 0 0
...................CAGGGTGAGGTCAAGATATGCG.................................................................................................................................................................................................................. 22 1 18 0.06 1 1 0 0 0 0 0
............CCGACTAGAGGGTGAGGTCAA.......................................................................................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0 0 0
.............CGACTAGAGGGTGAGGTCAAGATATG.................................................................................................................................................................................................................... 26 0 18 0.06 1 0 1 0 0 0 0
....................AGGGTGAGGTCAAGATATG.................................................................................................................................................................................................................... 19 0 18 0.06 1 0 0 0 1 0 0
............CCGACTAGAGGGTGAGGTCAAGAT....................................................................................................................................................................................................................... 24 0 18 0.06 1 0 1 0 0 0 0
.............CGACTAGAGGGTGAGGTCAAGAT....................................................................................................................................................................................................................... 23 0 18 0.06 1 0 1 0 0 0 0
...............................................................................GTCTACACCTCAGTCGAAAGGGCGTT.................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
......................................................................................CCTCAGTCGAAAGGGCGTTGTGAA............................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................CAACGTGTGAACACTGAATCAA........................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
..........................................................................CAGCCGTCTACACCTCAGTCGAAAGG....................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................ATGGGCCTACATGAACTTGGGTG................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..............................CAAGATATGCGCCACAGTCGCACACAC.................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
..........................................................................CAGCCGTCTACACCTCAGTCGA........................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................ACGTGAGAACACTGTATGGGCCTAC................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
......................................................................ACCACAGCCGTCTACACCTCAGTCGAA.......................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.................................................................CACACACCACAGCCGTCTACACCTCAGT.............................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
.......................................................................CCACAGCCGTCTACACCTCAGTCGA........................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
............................GTCAAGATATGCGCCACACTCGCACAC.................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.........................................................CGCAGCCGCACACACCACAGCCGTCT........................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
............................................................................................TCGAAAGGGCGTCGTGAACC........................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
......................................................................ACCACAGCCGTCTACACCTCAGTCGA........................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................GGGTGTCGTGAACTTATAACCCTTA............................................... 25 0 20 0.05 1 1 0 0 0 0 0
..................................................CACACACCGCAGCCGCACACACCAC................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................GCTCAAGTCCCGCATCACCAT....... 21 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................GGTGTCGTGAACTTATAACCCTTAA.............................................. 25 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................ATATGGGCCTACATGAACTTGGGTG................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.........................................CCACAGTCGCACACACCGCAGC............................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................AAAGGGCGTTGTGAAATCAGTC...................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................ACTTGGGTGTCGTGAGCTTATAAC.................................................... 24 1 20 0.05 1 1 0 0 0 0 0
............................................................................GCCGTCTACACCTCAGTCGAAAGGGCGT................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................CGAAACGGCGTTGTGAAA............................................................................................................................................ 18 1 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................................................GAACTTGGGTGTCGTGAACTTATAACC................................................... 27 0 20 0.05 1 1 0 0 0 0 0
............................................................................................TCGAAAGGGCGTCGTGAAC............................................................................................................................................ 19 2 20 0.05 1 0 0 0 1 0 0
............................................................AGCCGCACACACCACAGCCGTCTAC...................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.................................................................................TTACACCTCAGTCGAAAGGGCGTTGT................................................................................................................................................ 26 1 20 0.05 1 1 0 0 0 0 0
.............................................................................CCGTCTACACCCCAGTCGAACGG....................................................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................ACATGAACTTGGGTGTCGTGAA............................................................ 22 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................AGAATCAACGTGAGAACACTGTA......................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CTCAAGTCCCGCATCACCATCC..... 22 0 20 0.05 1 0 1 0 0 0 0
............................................................................GCCGTCTACACCTCAGTCGAAAG........................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................ACGTGAGAACACTGTATGGGCCTACAT.............................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
..................................................................ACACACCACAGCCGTCTACACCTCA................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
........................................................................CACAGCCGTCTACACCTCAGTCGA........................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................ATGGGCCTACATGAACTTGGGTGT.................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................AGCTCAAGTCCCGCATCACCATGC..... 24 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................TTGGGTGTCGTGAACTTATAACC................................................... 23 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................AGAACACTGTATGGGCCTACAT.............................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
GCCAAGCCTTATCCGACTAGAGGGT.................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.............................TCAAGATATGCGCCACAGTCGCACAC.................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................TGTGAAATCAGTCGCATGTATCAACGTG....................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................AGCTCAAGTCCCGCATCACCATCC..... 24 0 20 0.05 1 0 1 0 0 0 0
.......................................................ACCGCAGCCGCACACACCACAGTCGT.......................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................CAACGTCAGAACACTATATGGTCCT.................................................................................. 25 3 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................ATCAACGTGAGAACACTGTATGGGCCT.................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................GGCCTACATGAACTTGGGTGTCGT............................................................... 24 0 20 0.05 1 1 0 0 0 0 0
....................................ATGCGCCACAGTCGCACACACCGCA.............................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................TGAAATCAGTCGCATGTATCAACG......................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................GGTGTCGTGAACTTGTAACCCTT................................................ 23 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................CGCATGTATCAACGTGTGAACAC................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0
............................................................AGCCGCACACACCACAGCCGTCTACACCT.................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0 0
.......................................................................CCACAGCCGTCTACACCTCAGTCGAAAG........................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................CAAGTCCCGCATCACCATCCCCC.. 23 0 20 0.05 1 1 0 0 0 0 0
................................................................................TCTACACCTCAGTCGAAAAGGCGTTGT................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
...............................................................................GTCTACACCTCAGTCGAAAGGGCGT................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..................................ATATGCGCCACAGTCGCAC...................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................CAGTCGCATGTATCAACGTGT...................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
............................GTCAAGATATGCGCCACAGTCGCACA..................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................CGTGAGAACACTGTATGGGCCTGC................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0
.CCAAGCCTTATCCGACTAGAGGGTG................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
...........................................................CAGCCGCACACACCACAG.............................................................................................................................................................................. 18 0 20 0.05 1 0 1 0 0 0 0
.............................................AGTCGCACACACCGCAGCCGCACACAC................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..............................................................................CGTCTACACCTCAGTCGAAAGGGCTT................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
...........................................................................................GTCGAAAGGGCGTTGTGAAATCAGT....................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................ACACTGTGTGGGTGTACATG............................................................................. 20 3 20 0.05 1 0 0 1 0 0 0
.....................................................................................................................................................................................................ACCCTTAACACGGATACAACACCTAAGC.......................... 28 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................CAACGTGAGAACACTGTATGGGCCT.................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................TGAACTTGGGTGTCGTGAACTTAT....................................................... 24 0 20 0.05 1 0 1 0 0 0 0
.....................................................................CACCACAGCCGTCTACACCTCATT.............................................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
...........................................................................AGCCGTCTACACCTCAGTCGAA.......................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................TGAGAATACTGTATGGGCCTAAAT.............................................................................. 24 2 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................TCAACGTGAGAACACTGTATGGGCGT.................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13111:1034360-1034610 - dan_1272 CGGTTCGGAATAGGCTGATCTCCCACTCCAGTTCTATACGCGGTGTCAGCGTG------------------TGTGGCGTCGGCGTGTGTGGTGTCGGCAGATGTGGAGTCAGCTTTCCCGCAACACTTTAGTCAGCGTACATAGTTGCACACTTGTGACTTAGTTGCACTCTTGTGACATACCCGGATGTACTTGAACCCACAGCACTTGAATATTGGGAATTGTGCCTATGTTGTGGATTCGAGTTCAGGGCGTAGT----GGTAGGGGGCG
droBip1 scf7180000396571:14395-14449 - GCG-G--------------------------------------TGTTGGCGTT------------------GGTAGCGCTGGCGGTGGTGGCGGCGGCGGTGGTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGG
droFic1 scf7180000454102:2348-2397 + CGG-C---------------------------------------GTCGGCGTC------------------CTCGGCGGCGGCGTGGGTGGCAACGGCGGCTGCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GG
droEle1 scf7180000491238:777294-777378 - TGC-C------------------------------------------GGGGTG------------------TTTGGCGATGGGGTGTGTGTCGTCGACATCTGTTTGACCTTCCTCCTCGTAGCTCGTAGCTCGTA------------------------------------------------------------------------------------------------------------------------------GTTTG-TAGTT
droRho1 scf7180000779659:490268-490344 + CGGAGCGGTATAAGCTGGAGC-----------ACTGTAGGCGGTGTAAGCGGG------------------AGCAGCGGCAGCGTATGTGGAGTAGGCGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGG
droBia1 scf7180000302083:19-63 + CCA-C---------------------------------------------------------------------CC-----------------------------------------------TACGCTAGTCAGTGTTCCCAGCTGCATACTTGTAT---------------------------------------------------------------------------------------------------------------CTTA
droYak3 v2_chrUn_6996:746-787 - GTG-C---------------------------------------------------------------------AGCGTCGGTGTGCGCGGTGGCGGCGGCGTCGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCGG
droEre2 scaffold_4784:21313899-21313927 - GTT-C---------------------------------------------------------------------TGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGTACCGCGTGGTGGGCG
dp5 XL_group1a:3041100-3041149 + GAT-----------------------------------------GGCTGCATC------------------GGTGGCATTGGCATGTCTTGTGTCGGCATGTGTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GT
droPer2 scaffold_876:5925-5975 + TCG-A---------------------------------------------------------------------GAA-----------------------TT--------------------------------------------------------------------------------------------------------------------------TCCCTATCTTTTGGGTTGCTGTTGA--GCTTATT----GATAA-GGGGG
droWil2 scf2_1100000004629:1411-1506 - GGC-CCGGCAGAGGCGAGTATC-----------TCAGCAG------------TTGGCCCGGCAGGGGCGAGTGTGGCGGCAGTTGGCCCGGCAGGGGCGAATGTGGCATCAGTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------CCCG
droVir3 scaffold_12823:2045415-2045469 - GTG-C-----------------------------CGTCCGTGATGTCTCCGGT------------------TGTGGTGCCGCCGCTTGTGGTGCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTG
droMoj3 scaffold_5986:537-573 - GTG-G---------------------------------------------------------------------TGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAGGGGGCGTGTG----GGTGAGAGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGGTTCGGAATAGGCTGATCTCCCACTCCAGTTCTATACGCGGTGTCAGCGTG------------------TGTGGCGTCGGCGTGTGTGGTGTCGGCAGATGTGGAGTCAGCTTTCCCGCAACACTTTAGTCAGCGTACATAGTTGCACACTTGTGACTTAGTTGCACTCTTGTGACATACCCGGATGTACTTGAACCCACAGCACTTGAATATTGGGAATTGTGCCTATGTTGTGGATTCGAGTTCAGGGCGTAGT----GGTAGGGGGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................TCAGCGTG------------------TGTGGCGTCGGCGTGTG.........................................................................................................................................................................................25201.25252500000
...........................................................................................................................................................................................................................................TGGATTCGAGTTCAGGGCGTAGT----GG.........2511.001100000
.....................................................................................................................................................................................CCCGGATGTACTTGAACCCACAGCACT.................................................................27200.60121200000
.....................................................................................................................................................................................CCCGGATGTACTTGAACCCACAGCAC..................................................................26200.50101000000
.......................................................................................................................................................................................CGGATGTACTTGAACCCACAGCACTTG...............................................................27200.459900000
..........TAGGCTGATCTCCCACTCCAGTTCTA.............................................................................................................................................................................................................................................26180.397700000
...........................................................................................................................................................TGACTTAGTTGCACTCTTGTGACATA............................................................................................26200.357700000
...................................................TG------------------TGTGGCGTCGGCGTGTGTGGTGT...................................................................................................................................................................................25200.306600000
....................................................................................................................................................................................ACCCGGATGTACTTGAACCCACAGCAC..................................................................27200.306600000
..........................TCCAGTTCTATACGCGGTGTCAGC...............................................................................................................................................................................................................................24200.306321000
....TCGGAATAGGCTGATCTCCCACTCCAG..................................................................................................................................................................................................................................................27180.285500000
.............................................................................................TCGGCAGATGTGGAGTCAGCTTTCCCGC........................................................................................................................................................28200.255320000
..........................TCCAGTTCTATACGCGGTGTCAGCGTG------------------..........................................................................................................................................................................................................27200.255500000
.....................................................................................................................................................................................CCCGGATGTACTTGAACCCACAGCACC.................................................................27200.255050000
....TCGGAATAGGCTGATCTCCCACTCCAGT.................................................................................................................................................................................................................................................28180.224400000
.............................................................................................TCGGCAGATGTGGAGTCAGCTTTCCCG.........................................................................................................................................................27200.204400000
.............................................TCAGCGTG------------------TGTGGCGTCGGCGTGTGTG.......................................................................................................................................................................................27200.204400000
....................................................................................................................................................................................ACCCGGATGTACTTGAACCCACAGCACTT................................................................29200.204400000
..................TCTCCCACTCCAGTTCTATACGCGGTG....................................................................................................................................................................................................................................27170.183300000
....................TCCCACTCCAGTTCTATACGCGGTG....................................................................................................................................................................................................................................25170.183300000
...............TGATCTCCCACTCCAGTTCTATACGCGG......................................................................................................................................................................................................................................28180.173300000
...................................................TG------------------TGTGGCGTCGGCGTGTGTGG......................................................................................................................................................................................22200.153300000
..........................................................................................................................................................................................ATGTACTTGAACCCACAGCACT.................................................................22200.153030000
...................................................................................................GATGTGGAGTCAGCTTTCCCGCAACACTT.................................................................................................................................................29200.153300000
......................................................................................................................................................................................................................TTGGGAATTGTGCCTATGTTGTGGAT.................................26200.153200010
..................................................................................................................TTCCCGCAACACTTTAGTCAGCGTACA....................................................................................................................................27200.153300000
...........................................................................................................................................................................................TGTACTTGAACCCACAGCACTTGAAT............................................................26200.153300000
................................................................................................................................................................TAGTTGCACTCTTGTGACATACCCGG.......................................................................................26200.153300000
............................................................................................................................................................................TGTGACATACCCGGATGTACTTGAACC..........................................................................27200.153300000
.............................................................................................................................................................................................TACTTGAACCCACAGCACTTGAATATTG........................................................28200.153300000
...................................................................................................GATGTGGAGTCAGCTTTCCCGCAACAC...................................................................................................................................................27200.153300000
....................TCCCACTCCAGTTCTATACGCGGTGTC..................................................................................................................................................................................................................................27170.122200000
.......................CACTCCAGTTCTATACGCGGTGTCAGCG..............................................................................................................................................................................................................................28170.122200000
..........TAGGCTGATCTCCCACTCCAGTTC...............................................................................................................................................................................................................................................24180.112200000
..............................................CAGCGTG------------------TGTGGCGTCGGCGTGTG.........................................................................................................................................................................................24200.102200000
....................................................................................TGTGTGGTGTCGGCAGATGTGGAGT....................................................................................................................................................................25200.102200000
.........................................................................................................GAGTCAGCTTTCCCGCAACACTTTAGT.............................................................................................................................................27200.102200000
..GTTCGGAATAGGCTGATCTCCCACC......................................................................................................................................................................................................................................................25200.102020000
......................................................................................TGTGGTGTCGGCAGATGTGGAGTC...................................................................................................................................................................24200.102011000
...........................................................................................................................................................TGACTTAGTTGCACTCTTGTGACATACCC.........................................................................................29200.102110000
.......................................................................................................................................................................................CGGATGTACTTGAACCCACAGCACTTGAA.............................................................29200.102200000
....TCGGAATAGGCTGATCTCCCACTCC....................................................................................................................................................................................................................................................25200.102200000
......................................................................................................................................................................................................................TTGGGAATTGTGCCTATGTTGTGGA..................................25200.102101000
...TTCGGAATAGGCTGATCTCCCACT......................................................................................................................................................................................................................................................24200.102200000
....................TCCCACTCCAGTTCTATACGCGGTGTCG.................................................................................................................................................................................................................................28170.061100000
.......................CACTCCAGTTCTATACGCGGTGTCAGC...............................................................................................................................................................................................................................27170.061100000
.....................CCCACTCCAGTTCTATACGCGGTGTCA.................................................................................................................................................................................................................................27170.061100000
.....................CCCACTCCAGTTCTATACGCGGTGTCAGC...............................................................................................................................................................................................................................29170.061100000
..................TCTCCCACTCCAGTTCTATACGCGGTGTA..................................................................................................................................................................................................................................29170.061100000
..................TCTCCCACTCCAGTTCTATACGCGGTGT...................................................................................................................................................................................................................................28170.061100000
..................TCTCCCACTCCAGTTCTATACGCGG......................................................................................................................................................................................................................................25180.061100000
......GGAATAGGCTGATCTCCCACTCCAGT.................................................................................................................................................................................................................................................26180.061100000
...........AGGCTGATCTCCCACTCCAGTTCTATAC..........................................................................................................................................................................................................................................28180.061100000
...........AGGCTGATCTCCCACTCCAGTTCTA.............................................................................................................................................................................................................................................25180.061100000
....TCGGAATAGGCTGATCTCCCACTCCAGTT................................................................................................................................................................................................................................................29180.061100000
.......GAATAGGCTGATCTCCCACTCCAGTTC...............................................................................................................................................................................................................................................27180.061100000
..........TAGGCTGATCTCCCACTCCAGTTCTAT............................................................................................................................................................................................................................................27180.061100000
..........TAGGCTGATCTCCCACTCCAGTT................................................................................................................................................................................................................................................23180.061010000
....................TCCCACTCCAGTTCTATACGCGG......................................................................................................................................................................................................................................23180.061010000
...............TGATCTCCCACTCCAGTTCTA.............................................................................................................................................................................................................................................21180.061100000
...........AGGCTGATCTCCCACTCCAGTTCTATA...........................................................................................................................................................................................................................................27180.061100000
................GATCTCCCACTCCAGTTCTATACGCG.......................................................................................................................................................................................................................................26180.061100000
............................................................................................................TCAGCTTTCCCGCAACACTTTAGTC............................................................................................................................................25200.051010000
.....................................................................................................................................................................................CCCGGATGTACTTGAACCCAC.......................................................................21200.051100000
...........................................................................................................................................................................................................GCACTTGAATATTGGGAATTGTGCCTA...........................................27200.051100000
.........................CTCCAGTTCTATACGCGGTGTCAGCGTG------------------..........................................................................................................................................................................................................28200.051100000
.................................................................................................................................................................AGTTGCACTCTTGTGACATACCCGG.......................................................................................25200.051100000
...................................................................................................................................................................................TACCCGGATGTACTTGAACCCACAGCACC.................................................................29200.051010000
.......................................................................TGTGGCGTCGGCGTGTGTGGTGTC..................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................TGACATACCCGGATGTACTTGAACCC.........................................................................26200.051010000
.....................................................................................................................................................................................................................ATTGGGAATTGTGCCTATGTTGTGGAT.................................27200.051100000
..GTTCGGAATAGGCTGATCTCCCACTC.....................................................................................................................................................................................................................................................26200.051100000
......................................................................................................................CGCAACACTTTAGTCAGCGTACATAGC................................................................................................................................27200.051010000
...............................................................................................................................................................................................................TTGAATATTGGGAATTGTGCC.............................................21200.051010000
..........................TCCAGTTCTATACGCGGTGTCAG................................................................................................................................................................................................................................23200.051100000
............................................................................................................................................................................................................CACTTGAATATTGGGAATTGTGCC.............................................24200.051100000
...........................................TGTCAGCGTG------------------TGTGGCGTCGG...............................................................................................................................................................................................21200.051100000
............................................................................................................................................................................TGTGACATACCCGGATGTACTTGAACCCA........................................................................29200.051100000
.............................................................................................................CAGCTTTCCCGCAACACTTTAGTCA...........................................................................................................................................25200.051100000
....................................................................................................................................................................................................................TATTGGGAATTGTGCCTATGTTGTGG...................................26200.051100000
.......................................................................TGTGGCGTCGGCGTGTGTGGTGTT..................................................................................................................................................................................24200.051100000
.......................................................................................................................................................................................................................TGGGAATTGTGCCTATGTTGTGGA..................................24200.051100000
..................................................................................................................TTCCCGCAACACTTTAGTCAGCGTAC.....................................................................................................................................26200.051100000
.........................................................................................................................................................................TCTTGTGACATACCCGGATGTACTTG..............................................................................26200.051100000
........................................................................................TGGTGTCGGCAGATGTGGAGTCAGCTT..............................................................................................................................................................27200.051100000
....................................TACGCGGTGTCAGCGTG------------------TGTGGCGTCG................................................................................................................................................................................................27200.051100000
...................................................................................................................................................................................TACCCGGATGTACTTGAACCCA........................................................................22200.051100000
.............................................TCAGCGTG------------------TGTGGCGTCGGC..............................................................................................................................................................................................20200.051100000
...........................................................................................................................................................TGACTTAGTTGCACTCTTGTGACATAAA..........................................................................................28200.051100000
................................TCTATACGCGGTGTCAGCGTG------------------TGTGGCG...................................................................................................................................................................................................28200.051100000
...............................................................................................................................................................................................................TTGAATATTGGGAATTGTGCCTATGTT.......................................27200.051000010
.....................................................................................................TGTGGAGTCAGCTTTCCCGCAACAC...................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................ATTGTGCCTATGTTGTGGATT................................21200.051000001
..........................TCCAGTTCTATACGCGGTGTCAGCGT.............................................................................................................................................................................................................................26200.051010000
...................................................................................................................................................................................TACCCGGATGTACTTGAACCCACAGCACT.................................................................29200.051000010
.....................................................................................................................................................................................................................................................TTCAGGGCGTAGT----GGTAGGGG...21200.051010000
........................................................................................................................................................................................GGATGTACTTGAACCCACAGCA...................................................................22200.051100000
...........................................................................................................................................................................................................GCACTTGAATATTGGGAATTGTGCC.............................................25200.051010000
............................................................................................................TCAGCTTTCCCGCAACACTTTAGTCA...........................................................................................................................................26200.051100000
...............................TTCTATACGCGGTGTCAGCGTG------------------TGT.......................................................................................................................................................................................................25200.051100000
.............................................................................................................................................................................................................ACTTGAATATTGGGAATTGTGCCTA...........................................25200.051100000
...TTCGGAATAGGCTGATCTCCCACTC.....................................................................................................................................................................................................................................................25200.051100000
.........................................................................................................................................................................TCTTGTGACATACCCGGATGTACT................................................................................24200.051010000
...........................................................................................................................................................................................TGTACTTGAACCCACAGCACTTGAAA............................................................26200.051100000
......................................................................................................................................................................CACTCTTGTGACATACCCGGATGTACT................................................................................27200.051100000
.....................................................................................................................................AGCGTACATAGTTGCACACTTGTGA...................................................................................................................25200.051100000
............................................................................................................................................................................................................CACTTGAATATTGGGAATTGTGCCTA...........................................26200.051100000
....................................................................................................................................................................TGCACTCTTGTGACATACCCGGATGTACT................................................................................29200.051010000
....................................................................................TGTGTGGTGTCGGCAGATGTGGA......................................................................................................................................................................23200.051100000
...........................................................................................TGTCGGCAGATGTGGAGTCAGCT...............................................................................................................................................................23200.051100000
....................................................................................................................CCCGCAACACTTTAGTCAGCGTACATAGT................................................................................................................................29200.051100000
....................................................................................................................................................ACACTTGTGACTTAGTTGCACTCTTG...................................................................................................26200.051010000
..............................................................................................................................................................................TGACATACCCGGATGTACTTGAACCCAC.......................................................................28200.051100000
..GTTCGGAATAGGCTGATCTCCCACT......................................................................................................................................................................................................................................................25200.051100000
.......................................................................................................................................................................................................................................................CAGGGCGTAGT----GGTAGGGGGC.21200.051100000
...............................................AGCGTG------------------TGTGGCGTCGGCGTGTGTGG......................................................................................................................................................................................26200.051100000
....................................................................................................................................................................................................................TATTGGGAATTGTGCCTATG.........................................20200.051100000
..........................................................................................................................................................................CTTGTGACATACCCGGATGTA..................................................................................21200.051100000
......................................................................................................................................................................CACTCTTGTGACATACCCGGATGTACTTG..............................................................................29200.051100000
........................................................................................................................................................................................................ACAGCACTTGAATATTGGGA.....................................................20200.051001000
.............................................TCAGCGTG------------------TGTGGCGTCGGCGC............................................................................................................................................................................................22200.051010000
droBip1
GCG-G--------------------------------------TGTTGGCGTT------------------GGTAGCGCTGGCGGTGGTGGCGGCGGCGGTGGTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGSizeHit CountTotal NormTotal
No Reads
droFic1
CGG-C---------------------------------------GTCGGCGTC------------------CTCGGCGGCGGCGTGGGTGGCAACGGCGGCTGCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSizeHit CountTotal NormTotal
No Reads
droEle1
TGC-C------------------------------------------GGGGTG------------------TTTGGCGATGGGGTGTGTGTCGTCGACATCTGTTTGACCTTCCTCCTCGTAGCTCGTAGCTCGTA------------------------------------------------------------------------------------------------------------------------------GTTTG-TAGTTSizeHit CountTotal NormTotal
No Reads
droRho1
CGGAGCGGTATAAGCTGGAGC-----------ACTGTAGGCGGTGTAAGCGGG------------------AGCAGCGGCAGCGTATGTGGAGTAGGCGGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGSizeHit CountTotal NormTotal
No Reads
droBia1
CCA-C---------------------------------------------------------------------CC-----------------------------------------------TACGCTAGTCAGTGTTCCCAGCTGCATACTTGTAT---------------------------------------------------------------------------------------------------------------CTTASizeHit CountTotal NormTotal
No Reads
droYak3
GTG-C---------------------------------------------------------------------AGCGTCGGTGTGCGCGGTGGCGGCGGCGTCGGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................TGTGCGCGGTGGCGGCGGCGTCGG.......................................................................................................................................................................2420.50101000000000
droEre2
GTT-C---------------------------------------------------------------------TGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGTACCGCGTGGTGGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GAT-----------------------------------------GGCTGCATC------------------GGTGGCATTGGCATGTCTTGTGTCGGCATGTGTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCG-A---------------------------------------------------------------------GAA-----------------------TT--------------------------------------------------------------------------------------------------------------------------TCCCTATCTTTTGGGTTGCTGTTGA--GCTTATT----GATAA-GGGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGC-CCGGCAGAGGCGAGTATC-----------TCAGCAG------------TTGGCCCGGCAGGGGCGAGTGTGGCGGCAGTTGGCCCGGCAGGGGCGAATGTGGCATCAGTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------CCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................GCAGTTGGCCCGGCAGGGGCG..............................................................................................................................................................................21200.05100100
....................................GCAG------------TTGGCCCGGCAGGA...............................................................................................................................................................................................................18200.05101000
................AGTATC-----------TCAGCAG------------TTGGCCCGGC...................................................................................................................................................................................................................23200.05101000
...........AGGCGAGTATC-----------TCAGCAG------------TTG..........................................................................................................................................................................................................................21200.05100010
.......GCAGAGGCGAGTATC-----------TCAGCA..........................................................................................................................................................................................................................................21200.05101000
droVir3
GTG-C-----------------------------CGTCCGTGATGTCTCCGGT------------------TGTGGTGCCGCCGCTTGTGGTGCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GTG-G---------------------------------------------------------------------TGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAGGGGGCGTGTG----GGTGAGAGGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 01:15 AM