dan_1262

Antisense to exon [dana_GLEANR_7380:1]; Antisense to CDS [Dana\GF22847-cds]; exon [dana_GLEANR_7129:1]; CDS [Dana\GF22788-cds]; intron [Dana\GF22788-in]

Name	Class	Family	Strand
DIVER2_I-int	LTR	Pao	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGATTAGCGCTGTGCTGCTGACCACCTTCACTCTTCTGCTGCTCATCTCGGTGACTTTTATCTAGCCGGAGCTACAAGGCGGGCAGTCAACAAATTGTGTTTGTTGCCCCTTCAAGATTGAAAGCTCATCTTCCAACCGGGGGAGTACTCGGGTCAAGCTACCGCCGGAAAATGTGGCCCGCAATAATTTATTGAAAGAAACATCCGTGACGTCCACTCGCGCTCGCTCTTTCTCTCTCTTTTCGCGTCGT ************************************************................(((.(((((((((.((((((.(((((.....)).)))))))))))).(((((.((....)))))))....((((.(((((...........))).)).))))....)))))))))(((((...))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V055 head
.......................................................................CTACAAGGCGGGCAGTCAACAAATTGT.........................................................................................................................................................	27	0	20	0.40	8	8	0	0
......................................................................................TCAAGAAATTGTGTTAGTGGCC...............................................................................................................................................	22	3	3	0.33	1	0	1	0
.......CGCTGTGCTGCTGACCACCTT...............................................................................................................................................................................................................................	21	0	5	0.20	1	1	0	0
.....................................................................................................................................................................................................................CCACTCGCGCTCGCTCTTTCT.................	21	0	6	0.17	1	1	0	0
.............................................................................................................................................GGAGTACTAGGATCAAGCTC..........................................................................................	20	3	6	0.17	1	0	0	1
..............................................................................................................................................GAGTACTCGGGTGAAGGA...........................................................................................	18	3	20	0.15	3	0	3	0
...................................................................................................................................................................................................................................TCTTGCTCTCTATTTTCACGTC..	22	3	8	0.13	1	1	0	0
.......................................................................CTACAAGGAGGGCAGTCAACAAATTG..........................................................................................................................................................	26	1	20	0.05	1	1	0	0
........................................................................TACAAGGCGGGCAGTCAACAAATTGTG........................................................................................................................................................	27	0	20	0.05	1	1	0	0
..................................................................CGGAGCTACAAGGCGGGCAGTC...................................................................................................................................................................	22	0	20	0.05	1	1	0	0
...................................................................GGAGCTACAAGGCGGGCAGTCAACA...............................................................................................................................................................	25	0	20	0.05	1	1	0	0
.......................................................................CTACAAGGCGGGCAGTCAACAAATTG..........................................................................................................................................................	26	0	20	0.05	1	0	1	0
...........GTGCTGCTGATCATCTTC..............................................................................................................................................................................................................................	18	2	20	0.05	1	1	0	0

##############################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACTAATCGCGACACGACGACTGGTGGAAGTGAGAAGACGACGAGTAGAGCCACTGAAAATAGATCGGCCTCGATGTTCCGCCCGTCAGTTGTTTAACACAAACAACGGGGAAGTTCTAACTTTCGAGTAGAAGGTTGGCCCCCTCATGAGCCCAGTTCGATGGCGGCCTTTTACACCGGGCGTTATTAAATAACTTTCTTTGTAGGCACTGCAGGTGAGCGCGAGCGAGAAAGAGAGAGAAAAGCGCAGCA ************************************************................(((.(((((((((.((((((.(((((.....)).)))))))))))).(((((.((....)))))))....((((.(((((...........))).)).))))....)))))))))(((((...))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V039 embryo	V106 head	V105 male body
............................................................AGATCGGTCTCGATGTGGCGC..........................................................................................................................................................................	21	3	5	0.40	2	0	1	0	1	0
.........................................................................................................CGGGGAAGTTCTAACTTTCGAGTAG.........................................................................................................................	25	0	4	0.25	1	0	0	1	0	0
......................................................................................................................................TTGGCCCCCTCAGGAGCTCTG................................................................................................	21	3	5	0.20	1	0	0	1	0	0
........CGACACGACGACTGGTGGAAG..............................................................................................................................................................................................................................	21	0	5	0.20	1	1	0	0	0	0
.....................GGTGGAAGTGAGAAGACGACGAGT..............................................................................................................................................................................................................	24	0	5	0.20	1	1	0	0	0	0
..................................................................................................................................................................................................................................GAAAAAGAGAGAGAAAAG.......	18	1	20	0.10	2	0	0	0	2	0
..........................................................................GTTCCGCCCGTCAGTTGTTTAACAC........................................................................................................................................................	25	0	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................ACCACGAGCGAGAAAGAGA...............	19	2	13	0.08	1	1	0	0	0	0
........................................................................ATGTTCCGCCCGTCAGTTGTTTAACAC........................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0
......................................................................CGATGTTCCGCCCGTCAGTTGTTTGA...........................................................................................................................................................	26	1	20	0.05	1	1	0	0	0	0
....................................................................CTCGATGTTCCGCCCGTCAGTTGT...............................................................................................................................................................	24	0	20	0.05	1	1	0	0	0	0
...................................................................CCTCGATGTCCCGCCCGTCAGTTGTT..............................................................................................................................................................	26	1	20	0.05	1	1	0	0	0	0
................CGAATTGTGGAAGTGAGTA........................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
....................................................................CTCGATGTTCCGCCCGTCAGTTGTT..............................................................................................................................................................	25	0	20	0.05	1	1	0	0	0	0
.................................................................................................................................................................................................................................CGACAAAGTGAGAGAAAAG.......	19	2	20	0.05	1	0	0	0	0	1
......................................................................CGATGTTCCGCCCGTCAGTTGTTTAAC..........................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0
..................................CGACGACGGGTAAAGCCACTG....................................................................................................................................................................................................	21	3	20	0.05	1	0	1	0	0	0
..................................................................GCCTCGATGTTCCGCCCGTCAGTTGTT..............................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0
.........................................................................TGTTCCGCCCGTCAGTTGTTTAACA.........................................................................................................................................................	25	0	20	0.05	1	1	0	0	0	0
...................................................................CCTCGATGTTCCGCCCGTCAGTTGTT..............................................................................................................................................................	26	0	20	0.05	1	0	1	0	0	0
......................................................................CGATGTTCCGCCCGTCAGTTGTTTAACAC........................................................................................................................................................	29	0	20	0.05	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13099:3262252-3262502 -	dan_1262	TGATTAGCGCTGTGCTGCTGACCACCTTCACTCTTCTGCTGCTCATCTCGGTGACTTTTATCTAGCCGGAGCTACAAGGCGGGCAGTCAACAAATTG----TGTTTGTTGCCCCTTCAAGA-----TTGAAAGCTCATCTTCCA-ACCGGGGGAGTAC-TCGGGTCAAGCTACCGCCGGAAAATGT--------------------------------GGCCCGCAAT------------------------------------AATTTATTG----------------------A----AAGAAACATCCGTGACGTCCACTCGC-G-----------------------------CTCGCTCTTTCTCTCTCTTT-------TCGCGTCGT
droBip1	scf7180000396521:10419-10615 +		C-----------------------------------------------------------------CAGAACTACAAGGCAGTCAGTCCACAAATTGCCCCTGCTTGCTACCCCTTCAACATGCAGTTAAAAGCTCATCTCTTA-A-GGGGGGAGTATAACGGGTCATACAGGCTCCGAAAAATCT-----------------------------TC----CGGCAAA------------------------------------AATTTATT----------------------GACCTCAAGAAATATCCGTGACGTC-ACTCGGTTC----------------------------CCTGCGCCTC--TTCTTTTA-------TTTCGTCGC
droKik1	scf7180000302684:331000-331063 +		TGATCAGCGCTGTCCTGCTGACGGCCTTCACCCTGCTGCTGCCCATTTCGGTGACCTTCATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droFic1	scf7180000448683:18772-18965 -		-------------------------------------------------------------------GGAGTGACGAAACGAGCAGTTAATAAGCTG----TGTCTGCTGCCCCTTAAGGATGCTGTTGAAAGCCAGGCTTCCA-ACGGGGGGAGTATGTCGGGTCATCCAGCCGCAGCAGA-TAT-----------------------------------------------------------------------------------TTAGAT-----------------------------------------TCTCTT-AAT-GCTAGCTCTTAGCTTATCTGCATAATTACCATCGCTCTCTCTCTCTCTCTTTATCTTTCTATTCGC
droEle1	scf7180000491046:4323663-4323726 +		TGATGAGCGCTTTGCTCCTGACGGCCTTCACCCTTATACTGCCCTTTTCGGTGACCTTCATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droRho1	scf7180000765949:1196-1397 +		TTC------------------------------------------------------------ATCTGGAACCACCAAGCGCGCAGTATCTAAGCTG----TGCCTTTTGCCCCTTAAGGACGAAGTTGGAAGCCAGGCC--CAACTGGGGGGAGAATGTCGGGACAAGCAGCAGCCGCCAC-----------------------------------------------------------------------------C---TAATTTATAGATAAAACTCAAACAAAGCTTTCGTATTAAATACTAATTG*CAAGCC-G------------------------------------A-CTCTCTCTCTCTCTCTCT-------CTCGGCCGC
droBia1	scf7180000301914:18254-18357 +		-------------------------------------------------------------------GAAGTGACAAAGCGTGCAGTAAATAAGCTG----TGTCTGCTTCCCCTTAGGGATGATGTTGAAACCCAAGCTTCCA-ACGGGGGGAGTGTGTCGGGTCACGCAGCCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415127:5477-5664 -		TTC------------------------------------------------------------ATCTGTAACCACCAAGCGCGCAGTATCTAAGCTG----TGCCTTTTGCCCCTTAAGGACGAAGTTGGAAGCCAGGCC--CAACTAGGGGGAGAATGTCGGGGCAAGCAGCAGCCGCCAC-----------------------------------------------------------------------------C---TAATTTATAGATAAAGCTTAAACAAAGCGTTCGTATTACATACTAATT-----------------G----------------------------CTTATGT----TCTCGCC----------TTCGTTGG
droEug1	scf7180000409622:17354-17471 +		G----------------------------------------------------------------TTGGAACGACAACGCGTGCGGTGTCTAGGCTG----TGCCTGCTGCCCCTCAAGGACTTTGTTGAAGAGCCAGCCTTCA-A-GGGGGGAGGATGTTGTGCCAAGCAGCCAAAGACAAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG
dm3	chrU:5933743-5933853 +		-----------------------------------------------------------------CTGGAGTAATAATGCGGGCAGTGAACAAGCTG----TGTCTGCTTCCCCTTAAGGACTCTGTTGGAAGCTAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	node_70888:1728-1844 -		-----------------------------------------------------------------CTGGAGTTATAAGGCGGGCAGTGAACAAGCTG----TGTCTGCTTCCCCTTGAGGACTCTGTTGGAAGCCAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGAAAAAAACTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droSec2	scaffold_2700:2122-2237 +		-----------------------------------------------------------------CTGGAGTAATAAGGCGGGCAGTGAACAAGCTG----TGTCTGCTTCCCCTTGAGGACTCTGTTGGAAGCCAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGCCAAAAA-TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droYak3	2L:21934211-21934429 -		-----------------------------------------------------------------CTGGAGTAATAAGACGGGCAGTGAACAAGCTG----TGTCTGTTTCCCCTTGAGGACTCTATTGGAAACCAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGCAAAAAC-TGTGCAGTAGACTTATTTTATACTTTTAACATTGTAAGCCAAAAT------------------------------------AG-TCATTA----------------------A----TA---GCTGTTGCGATACCCAT-AGT-GC----------------------------ATCGCACTCTCTCTCTCTCT-------CTTTGTTAT
droEre2	scaffold_4845:1715702-1715859 +		AA---------------------------------------------------------------CAGGATTGACGAAGCGGGCAGTGAATAAGCTG----TGTCTGCTTCCCCTTAAGGATGCGATTGAAAACCACGCTTGTC-A-AC-----------------------------------AT-----------------------------TG----CAGAAACAATTAGTCCACGGCTATTCAGCTTTATCTATG---CAGATT-------------------------------AGCTGCA-------------G------------------------------------ATCGCACTCTCTCTCTCTCT---------------C
dp5	Unknown_singleton_862:1452-1551 +		-----------------------------------------------------------------CTGGAATCACCAAGCGCGCAGTCAACAAGCTG----TGCCTGCTGCCCCTTAAAGATGCTGTTGAAAGTCAGGCTTCCA-ACGGGGGGAGTATGTCGGGTCAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_74:347336-347458 -		-----------------------------------------------------------------CTGGAATCACCAAGCGCGCCGTCAACAAGCTG----TGCCTGCTGCCCCTTAAAGATGCTGTTGAAAGTCAGGTTTCCA-ACGGGGGGAGTATGTCGGGTTAAGCCGCTAAAA-----TAT------------------------------------------------------------------------TG---TAAATTATT------------------------------------------------------------------------------------------------------------------------G
droWil2	scf2_1100000004577:171869-171932 -		TGATCAGCGCTGTTCTATTGACTATTTTCACACTCTTGCTACCAATATCGGTGACATTCATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droVir3	scaffold_12929:191074-191181 -		G----------------------------------------------------------------CTGGAATCATCCGAAGAGCCGTAAGCAACCCG----TGTCTGCTGCCCCTTAAGGATTCTGTTGAAAGTCAGGCATCCA-ACGGGGGGAGTATGTTGGATTCTGCCGCAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:67246-67449 -		AG---------------------------------------------------------------CTGGCGAGATAAGAAGAGCTACAAATAAGCTG----TGCTTGCTGCCCCTTAAGGATTCTGTTGAAGACTAAGTCTTCA-ACGGGGGGAGGATGTTGGGCTCAGCAATCATCGCTTC-----------------------------------------------------------------------------ATTGTAATTAAGAGCGGCAATTCATAGAATATGTTATCATGTAAGAGAATTTGTAACGGA-G------------------------------------ATCACGCTCTCCCTTTTGCG-------TTGTCTCAT
droGri2	scaffold_15252:11569711-11569774 +		TGATTAGCGCCGTTTTGTTGACCGCTTTCACATTGCTGCTACCCATTTCGGTGACATTTATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TGATTAGCGCTGTGCTGCTGACCACCTTCACTCTTCTGCTGCTCATCTCGGTGACTTTTATCTAGCCGGAGCTACAAGGCGGGCAGTCAACAAATTG----TGTTTGTTGCCCCTTCAAGA-----TTGAAAGCTCATCTTCCA-ACCGGGGGAGTAC-TCGGGTCAAGCTACCGCCGGAAAATGT--------------------------------GGCCCGCAAT------------------------------------AATTTATTG----------------------A----AAGAAACATCCGTGACGTCCACTCGC-G-----------------------------CTCGCTCTTTCTCTCTCTTT-------TCGCGTCGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................CTACAAGGCGGGCAGTCAACAAATTG----T...................................................................................................................................................................................................................................................................................................	27	20	0.40	8	8	0	0	0	0	0
.......CGCTGTGCTGCTGACCACCTT.............................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CCACTCGC-G-----------------------------CTCGCTCTTTCT........................	21	6	0.17	1	1	0	0	0	0	0
........................................................................TACAAGGCGGGCAGTCAACAAATTG----TG..................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..................................................................CGGAGCTACAAGGCGGGCAGTC.................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...................................................................GGAGCTACAAGGCGGGCAGTCAACA.............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.......................................................................CTACAAGGCGGGCAGTCAACAAATTG----....................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droBip1

C-----------------------------------------------------------------CAGAACTACAAGGCAGTCAGTCCACAAATTGCCCCTGCTTGCTACCCCTTCAACATGCAGTTAAAAGCTCATCTCTTA-A-GGGGGGAGTATAACGGGTCATACAGGCTCCGAAAAATCT-----------------------------TC----CGGCAAA------------------------------------AATTTATT----------------------GACCTCAAGAAATATCCGTGACGTC-ACTCGGTTC----------------------------CCTGCGCCTC--TTCTTTTA-------TTTCGTCGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGATCAGCGCTGTCCTGCTGACGGCCTTCACCCTGCTGCTGCCCATTTCGGTGACCTTCATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-------------------------------------------------------------------GGAGTGACGAAACGAGCAGTTAATAAGCTG----TGTCTGCTGCCCCTTAAGGATGCTGTTGAAAGCCAGGCTTCCA-ACGGGGGGAGTATGTCGGGTCATCCAGCCGCAGCAGA-TAT-----------------------------------------------------------------------------------TTAGAT-----------------------------------------TCTCTT-AAT-GCTAGCTCTTAGCTTATCTGCATAATTACCATCGCTCTCTCTCTCTCTCTTTATCTTTCTATTCGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGATGAGCGCTTTGCTCCTGACGGCCTTCACCCTTATACTGCCCTTTTCGGTGACCTTCATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTC------------------------------------------------------------ATCTGGAACCACCAAGCGCGCAGTATCTAAGCTG----TGCCTTTTGCCCCTTAAGGACGAAGTTGGAAGCCAGGCC--CAACTGGGGGGAGAATGTCGGGACAAGCAGCAGCCGCCAC-----------------------------------------------------------------------------C---TAATTTATAGATAAAACTCAAACAAAGCTTTCGTATTAAATACTAATTG*CAAGCC-G------------------------------------A-CTCTCTCTCTCTCTCTCT-------CTCGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-------------------------------------------------------------------GAAGTGACAAAGCGTGCAGTAAATAAGCTG----TGTCTGCTTCCCCTTAGGGATGATGTTGAAACCCAAGCTTCCA-ACGGGGGGAGTGTGTCGGGTCACGCAGCCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTC------------------------------------------------------------ATCTGTAACCACCAAGCGCGCAGTATCTAAGCTG----TGCCTTTTGCCCCTTAAGGACGAAGTTGGAAGCCAGGCC--CAACTAGGGGGAGAATGTCGGGGCAAGCAGCAGCCGCCAC-----------------------------------------------------------------------------C---TAATTTATAGATAAAGCTTAAACAAAGCGTTCGTATTACATACTAATT-----------------G----------------------------CTTATGT----TCTCGCC----------TTCGTTGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G----------------------------------------------------------------TTGGAACGACAACGCGTGCGGTGTCTAGGCTG----TGCCTGCTGCCCCTCAAGGACTTTGTTGAAGAGCCAGCCTTCA-A-GGGGGGAGGATGTTGTGCCAAGCAGCCAAAGACAAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

-----------------------------------------------------------------CTGGAGTAATAATGCGGGCAGTGAACAAGCTG----TGTCTGCTTCCCCTTAAGGACTCTGTTGGAAGCTAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................TAATGCGGGCAGTGAACAAGCTG----TG..................................................................................................................................................................................................................................................................................................	25	6	16.33	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	3	0	0	0	2	0	1	1	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	2	0	0	0	0	0	0	0	0	0	2	0	2	7	4	0	13	1	1	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	9	0	3	0	0	0	0	0	0	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	0	0	0	0	0	0
.......................................................................TAATAATGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	24	6	15.33	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	4	3	2	4	8	0	1	0	2	0	0	0	0	0	0	0	0	0	0	1	8	0	7	0	4	5	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
..........................................................................TAATGCGGGCAGTGAACAAGCTG----T...................................................................................................................................................................................................................................................................................................	24	6	10.17	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	2	5	8	8	0	0	0	1	0	0	0	0	0	0	0	2	0	1	1	0	0	3	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	1	0	0	0	0	0	0	0
.......................................................................TAATAATGCGGGCAGTGAACAAGCTG----T...................................................................................................................................................................................................................................................................................................	27	6	6.83	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	9	0	0	0	1	0	1	0	0	0	0	0	0	0	1	2	0	0	1	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TTCCCCTTAAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	26	4	6.75	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	1	3	0	0	2	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
.............................................................................TGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	24	6	6.67	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	1	0	1	8	0	0	0	0	2	0	0	0	1	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TAATAATGCGGGCAGTGAACAAGCT.........................................................................................................................................................................................................................................................................................................	25	6	4.67	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	2	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0
.....................................................................AGTAATAATGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	26	6	4.50	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	3	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	3	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................TCCA-ACGGGGGGAGGATGT.........................................................................................................................................................................................................................................	19	19	0.16	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CAGTGAACAAGCTG----TGTCTGCTTCCCCT......................................................................................................................................................................................................................................................................................	28	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GCGGGCAGTGAACAAGCTG----T...................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GGATGTTGGGTCATGCAGCCG..........................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CAGTGAACAAGCTG----TGTCTGCTTCCC........................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CAGTGAACAAGCTG----TGTCTGCTTC..........................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

-----------------------------------------------------------------CTGGAGTTATAAGGCGGGCAGTGAACAAGCTG----TGTCTGCTTCCCCTTGAGGACTCTGTTGGAAGCCAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGAAAAAAACTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	25	20	733.05	14661	0	0	0	0	0	0	818	2498	3708	2244	61	0	4993	339	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	25	20	292.65	5853	0	0	4	0	0	0	446	1475	1710	1010	30	0	1130	48	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	24	20	258.60	5172	0	0	0	1	0	0	378	977	1457	721	33	1	1505	99	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	26	20	251.80	5036	0	0	3	0	0	0	238	1107	1180	855	25	0	1527	101	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	26	20	248.25	4965	0	0	0	0	0	0	769	0	1404	0	0	0	2589	203	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	24	20	213.35	4267	0	8	220	27	0	0	2662	0	552	65	627	2	92	12	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	25	20	212.25	4245	1	10	217	28	0	0	2334	0	371	0	1277	7	0	0	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	26	20	169.55	3391	0	12	533	0	0	0	1133	169	152	29	1340	23	0	0	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	26	20	83.45	1669	0	0	14	14	0	0	416	405	246	235	33	1	278	27	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCCA.................................................................................................................................................................................................................................................................	28	20	55.05	1101	0	0	4	2	0	0	0	84	55	86	2	0	793	75	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGGA......................................................................................................................................................................................................................................................................	26	20	42.50	850	0	0	4	25	0	0	284	372	111	0	53	0	0	1	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	27	10	41.90	419	0	0	10	2	0	0	138	102	102	50	13	0	2	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	27	20	36.35	727	1	0	0	0	0	0	247	0	284	130	31	0	34	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	28	20	28.10	562	0	0	2	1	0	0	4	0	15	27	1	0	483	29	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	24	20	27.40	548	0	0	0	0	0	0	27	116	110	80	0	0	193	22	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCC........................................................................................................................................................................................................................................................................................	25	13	27.23	354	0	0	0	0	0	0	25	95	96	79	0	0	55	4	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	27	20	26.50	530	0	0	1	0	0	0	56	248	102	87	0	0	0	36	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	23	20	26.10	522	0	0	0	23	84	0	367	0	0	21	0	4	22	1	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----TGT.................................................................................................................................................................................................................................................................................................	26	10	25.70	257	0	0	0	2	0	0	76	81	51	36	8	0	3	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCA.............................................................................................................................................................................................................................................................	25	20	21.75	435	0	0	0	0	0	0	0	0	5	5	0	0	425	0	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	21	20	21.45	429	0	0	0	1	425	0	1	0	0	0	0	0	0	2	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCCC.......................................................................................................................................................................................................................................................................................	26	13	16.46	214	0	0	0	0	0	0	8	64	19	50	0	0	69	4	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCT............................................................................................................................................................................................................................................................................................	21	16	16.00	256	0	0	0	0	0	0	1	1	2	5	0	0	133	114	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	26	20	15.00	300	0	0	7	0	0	0	3	10	3	0	12	0	265	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTA............................................................................................................................................................................................................................................................	26	20	14.15	283	0	0	0	0	0	0	7	7	10	0	0	0	253	6	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGGAA.....................................................................................................................................................................................................................................................................	27	20	13.75	275	0	0	0	1	0	0	35	42	46	70	4	0	69	8	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTC...........................................................................................................................................................................................................................................................................................	22	16	13.56	217	0	0	0	0	0	0	0	0	1	1	0	0	181	34	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	27	20	13.40	268	0	0	3	0	0	0	0	19	0	20	5	0	194	27	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	25	20	12.60	252	0	0	1	0	0	0	78	50	34	26	7	0	49	7	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----TG..................................................................................................................................................................................................................................................................................................	25	10	12.30	123	0	0	1	1	0	0	35	35	25	21	4	0	1	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCCCT......................................................................................................................................................................................................................................................................................	27	12	10.33	124	0	0	0	1	0	0	2	41	11	31	0	0	38	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCCT.......................................................................................................................................................................................................................................................................................	26	13	10.23	133	0	0	0	0	0	0	9	22	52	47	0	0	3	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCA.............................................................................................................................................................................................................................................................	26	20	9.60	192	0	0	0	0	0	0	0	6	0	7	0	0	172	7	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGCCA.................................................................................................................................................................................................................................................................	27	20	9.40	188	0	0	1	0	0	0	15	19	29	23	2	0	89	10	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	30	20	9.25	185	0	0	0	0	0	0	33	40	21	10	0	0	75	6	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	28	20	8.65	173	0	0	1	1	0	0	1	4	4	6	7	0	129	20	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAACA.............................................................................................................................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	1	0	1	0	6	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	23	20	7.95	159	0	0	0	0	0	0	44	0	0	74	6	0	0	35	0	0	0
.......................................................................................................TCTGCTTCCCCTTGAGGA................................................................................................................................................................................................................................................................................	18	20	7.40	148	0	0	0	0	148	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAACAA............................................................................................................................................................................................................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	29	1	7.00	7	0	0	0	0	0	0	3	3	1	0	0	0	0	0	0	0	0
.....................................................................................................TGTCTGCTTCCCCTTGAGGACTCTGT..........................................................................................................................................................................................................................................................................	26	17	6.88	117	0	0	0	2	0	68	1	0	5	9	32	0	0	0	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTGGG.....................................................................................................................................................................................................................................	24	9	6.33	57	0	0	0	1	0	0	1	2	3	0	40	0	9	1	0	0	0
............................................................................AGGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	25	10	6.00	60	0	0	0	0	0	0	13	20	8	12	7	0	0	0	0	0	0
..............................................................................................................CCCCTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	29	20	5.95	119	0	0	1	0	0	0	2	4	6	8	0	0	93	5	0	0	0
.....................................................................................................................AGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	25	20	5.95	119	0	0	0	5	0	0	12	29	43	30	0	0	0	0	0	0	0
...............................................................................CGGGCAGTGAACAAGCTG----TGTCTGC.............................................................................................................................................................................................................................................................................................	25	11	5.91	65	0	0	0	0	0	0	8	6	4	3	39	0	5	0	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	22	20	5.70	114	0	0	7	0	0	0	30	11	21	3	26	0	7	9	0	0	0
...............................................................................................................................TGGAAGCCAAGCTTCCA-ACGGGGGGA...............................................................................................................................................................................................................................................	26	7	5.57	39	0	0	0	0	0	0	7	4	20	8	0	0	0	0	0	0	0
...............................................................................CGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	22	11	5.55	61	0	0	0	0	59	0	1	0	0	0	1	0	0	0	0	0	0
........................................................................TATAAGGCGGGCAGTGAACAAGCTG----....................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	3	0	0	2	0	0	0	0	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAA...............................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	1	0	0	0	3	1	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAAC..............................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	1	0	3	0	0	0	1	0	0	0	0
.....................................................................................................................AGGACTCTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	23	20	4.95	99	0	0	0	4	0	0	0	0	0	1	2	0	92	0	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGGAAG....................................................................................................................................................................................................................................................................	28	20	4.80	96	0	0	0	0	0	0	13	9	0	12	0	0	53	9	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	29	20	4.70	94	0	0	0	0	0	0	6	7	7	9	0	0	63	2	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTTCC..........................................................................................................................................................................................................................................................	27	20	4.45	89	0	0	3	0	81	0	5	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCCA.................................................................................................................................................................................................................................................................	25	20	4.30	86	0	0	0	0	0	0	0	60	0	26	0	0	0	0	0	0	0
...............................................................................................TG----TGTCTGCTTCCCCTTGAGGACTC.............................................................................................................................................................................................................................................................................	25	17	4.29	73	0	0	7	6	0	0	3	1	10	6	17	0	22	1	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGG.......................................................................................................................................................................................................................................................................	25	20	4.20	84	0	0	0	3	0	0	18	13	20	26	4	0	0	0	0	0	0
......................................................................................TGAACAAGCTG----TGTCTGCT............................................................................................................................................................................................................................................................................................	19	17	4.18	71	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAG....................................................................................................................................................................................................................................................................	25	20	4.00	80	0	0	0	0	0	0	11	15	3	8	0	0	37	6	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTC..........................................................................................................................................................................................................................................................................................	23	13	3.92	51	0	0	0	0	0	0	0	7	4	7	0	0	32	1	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGGATGTTG.......................................................................................................................................................................................................................................	21	9	3.89	35	0	0	0	0	33	0	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATG..........................................................................................................................................................................................................................................	19	9	3.89	35	0	0	0	0	33	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................TTGGGTCATGCAGCCGAAA.......................................................................................................................................................................................................................	19	14	3.64	51	0	0	0	0	51	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGT..........................................................................................................................................................................................................................................................................	22	20	3.60	72	0	0	0	0	0	71	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTG...........................................................................................................................................................................................................................................................................	21	20	3.60	72	0	0	0	0	71	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTGGGT....................................................................................................................................................................................................................................	25	9	3.56	32	0	0	0	0	0	0	1	3	6	3	18	0	1	0	0	0	0
...............................................................................................TG----TGTCTGCTTCCCCTTGA...................................................................................................................................................................................................................................................................................	19	20	3.55	71	0	0	0	0	70	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAG....................................................................................................................................................................................................................................................................	22	20	3.50	70	0	0	0	0	0	0	1	2	0	0	0	0	18	49	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCTA............................................................................................................................................................................................................................................................	27	20	3.30	66	0	0	0	0	0	0	0	5	0	0	0	0	61	0	0	0	0
..............................................................................................................CCCCTTGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	27	20	3.15	63	0	0	2	0	0	0	1	2	2	1	4	0	42	9	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----....................................................................................................................................................................................................................................................................................................	23	10	3.10	31	0	0	2	0	0	0	9	9	5	2	0	0	3	1	0	0	0
..........................................................................................CAAGCTG----TGTCTGCTTCCCCTTGAGGAC...............................................................................................................................................................................................................................................................................	28	14	3.07	43	0	0	0	1	0	0	18	11	0	4	2	0	6	1	0	0	0
.......................................................................TTATAAGGCGGGCAGTGAACAAGCTG----....................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCA..................................................................................................................................................................................................................................................................	27	20	3.00	60	0	0	0	0	0	0	0	0	0	1	0	0	53	6	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	19	20	2.95	59	0	0	0	0	0	0	1	0	5	2	50	1	0	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCC.........................................................................................................................................................................................................................................................................................	24	13	2.92	38	0	0	0	0	0	0	2	8	8	11	0	0	9	0	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	26	20	2.80	56	0	0	0	0	0	0	1	1	6	1	0	0	40	7	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	31	20	2.75	55	0	0	0	0	0	0	32	18	0	0	0	0	0	5	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCT.........................................................................................................................................................................................................................................................................................................	22	10	2.70	27	0	0	0	0	0	0	6	9	4	4	0	0	4	0	0	0	0
...........................................................................AAGGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	26	10	2.60	26	0	0	0	0	0	0	5	8	5	7	1	0	0	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	24	20	2.60	52	0	1	0	0	0	0	2	0	0	5	0	0	31	13	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTA...........................................................................................................................................................................................................................................................................................	22	16	2.56	41	0	0	0	0	0	0	0	0	0	0	0	0	32	9	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTC............................................................................................................................................................................................................................................................	26	20	2.55	51	0	0	0	0	0	0	3	1	0	0	0	0	47	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTT...........................................................................................................................................................................................................................................................................................	22	16	2.44	39	0	0	0	0	0	0	0	1	1	5	0	0	27	5	0	0	0
...............................................................................................TG----TGTCTGCTTCCCCTTGAGGACTCTG...........................................................................................................................................................................................................................................................................	27	17	2.24	38	0	0	0	5	0	0	3	2	11	13	4	0	0	0	0	0	0
..............................................................................................................CCCCTTGAGGACTCTGTTGGAAGCCA.................................................................................................................................................................................................................................................................	26	20	2.00	40	0	0	1	0	0	0	8	10	11	7	2	0	0	1	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----T...................................................................................................................................................................................................................................................................................................	24	10	2.00	20	0	0	0	0	0	0	5	4	4	0	7	0	0	0	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAAA..............................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	22	20	1.95	39	0	0	0	0	0	0	0	8	0	1	0	0	22	8	0	0	0
.......................................................................................................TCTGCTTCCCCTTGAGGACTCTGTTGGA......................................................................................................................................................................................................................................................................	28	18	1.94	35	0	0	0	1	0	0	7	11	6	10	0	0	0	0	0	0	0
...............................................................................CGGGCAGTGAACAAGCTG----TGTCTGCT............................................................................................................................................................................................................................................................................................	26	11	1.91	21	0	0	0	0	0	0	2	6	1	8	2	0	2	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAA.....................................................................................................................................................................................................................................................................	21	20	1.90	38	0	0	0	0	0	0	0	0	0	0	0	0	5	33	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	21	10	1.90	19	0	0	1	0	0	0	8	4	2	1	0	0	2	1	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	29	20	1.90	38	0	0	1	2	0	0	1	5	1	2	2	0	0	24	0	0	0
.................................................................................................................CTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	26	20	1.90	38	0	0	0	0	0	0	0	11	10	0	6	0	11	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGC.............................................................................................................................................................................................................................................................................................	20	16	1.81	29	0	0	0	0	0	0	0	0	3	8	0	0	8	10	0	0	0
............................................................................AGGCGGGCAGTGAACAAGCTG----TGT.................................................................................................................................................................................................................................................................................................	24	10	1.80	18	0	0	0	0	0	0	2	7	4	4	1	0	0	0	0	0	0
...........................................................................................................CTTCCCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	27	20	1.80	36	0	0	0	0	0	0	9	8	10	7	0	0	2	0	0	0	0
.....................................................................................................................AGGACTCTGTTGGAAGCCAAGCA.............................................................................................................................................................................................................................................................	23	20	1.75	35	0	0	0	0	0	0	0	0	0	0	0	0	33	2	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	18	20	1.70	34	0	0	1	0	0	0	2	0	0	0	31	0	0	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	28	20	1.70	34	0	0	0	0	0	0	6	13	6	4	3	0	2	0	0	0	0
........................................................................................................................................................GAGGATGTTGGGTCATGCAGCCGAA........................................................................................................................................................................................................................	25	3	1.67	5	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0
........................................................................................................................ACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	22	20	1.60	32	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0
................................................................................................................CCTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	27	20	1.60	32	0	0	0	0	0	0	0	1	1	3	1	0	26	0	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAA.....................................................................................................................................................................................................................................................................	24	20	1.55	31	0	0	0	0	0	0	3	1	3	10	1	0	13	0	0	0	0
..................................................................................................................................................CGGGGGGAGGATGTTGGGTCAT.................................................................................................................................................................................................................................	22	10	1.50	15	0	0	0	0	0	0	0	0	0	0	0	0	14	1	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCAA............................................................................................................................................................................................................................................................	27	20	1.50	30	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0
..............................................................................................................CCCCTTGAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	25	20	1.50	30	0	0	0	0	0	0	1	1	5	2	3	0	16	2	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	27	20	1.50	30	0	0	0	0	0	0	0	0	2	12	0	0	0	16	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCA............................................................................................................................................................................................................................................................................................	21	16	1.50	24	0	0	0	0	0	0	0	0	0	0	0	0	20	4	0	0	0
...........................................................................................................................CTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	19	20	1.50	30	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCAA............................................................................................................................................................................................................................................................	26	20	1.40	28	0	0	0	0	0	0	0	0	0	0	0	0	25	3	0	0	0
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGGAAA....................................................................................................................................................................................................................................................................	28	20	1.40	28	0	0	0	0	0	0	0	0	2	1	0	0	21	4	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCAA...........................................................................................................................................................................................................................................................................................	22	16	1.31	21	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0
........................................................................................................................ACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	21	20	1.30	26	0	0	0	0	0	0	1	0	1	0	24	0	0	0	0	0	0
..........................................................................................CAAGCTG----TGTCTGCTTCCCCTTGAGGACTC.............................................................................................................................................................................................................................................................................	30	14	1.29	18	0	0	0	0	0	0	4	9	1	0	0	0	4	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCCAAGCA.............................................................................................................................................................................................................................................................	29	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	24	1	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTGG......................................................................................................................................................................................................................................	23	9	1.22	11	0	0	0	2	0	0	0	1	1	0	7	0	0	0	0	0	0
...............................................................................................................................................................TTGGGTCATGCAGCCGAA........................................................................................................................................................................................................................	18	14	1.21	17	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AGGACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	24	20	1.15	23	0	0	0	4	0	0	0	8	0	0	0	0	0	11	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCA.................................................................................................................................................................................................................................................................	22	20	1.10	22	0	0	0	0	0	0	2	5	11	0	2	0	1	1	0	0	0
....................................................................................................................GAGGACTCTGTTGGA......................................................................................................................................................................................................................................................................	15	20	1.10	22	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	21	20	1.10	22	0	1	0	0	0	0	8	8	2	2	0	0	1	0	0	0	0
...............................................................................................TG----TGTCTGCTTCCCCTTGAGGACTCTGT..........................................................................................................................................................................................................................................................................	28	17	1.06	18	0	0	0	0	0	0	1	0	1	10	6	0	0	0	0	0	0
....................................................................................................................GAGGACTCTGTTGGAA.....................................................................................................................................................................................................................................................................	16	20	1.05	21	0	0	0	0	0	0	5	2	0	0	14	0	0	0	0	0	0
........................................................................TATAAGGCGGGCAGTGAACAAGCTG----TG..................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................TATAAGGCGGGCAGTGAACAAGCTG----TGT.................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................AGTTATAAGGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TGTTGGGTCATGCAGCCGAAAAAAA...................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................TATAAGGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................TGGAGTTATAAGGCGGGCAGTGAACAAG...........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................TATAAGGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................TTATAAGGCGGGCAGTGAACAAGC..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	18	20	1.00	20	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTCA..........................................................................................................................................................................................................................................................................................	23	16	0.94	15	0	0	0	0	0	0	0	0	0	0	0	0	14	1	0	0	0
........................................................................................AACAAGCTG----TGTCTGCTTCCCCTTGA...................................................................................................................................................................................................................................................................................	26	15	0.93	14	0	0	0	0	0	0	2	0	8	4	0	0	0	0	0	0	0
......................................................................................TGAACAAGCTG----TGTCTGCTTCCC........................................................................................................................................................................................................................................................................................	23	14	0.93	13	0	0	0	0	0	0	0	0	7	4	0	0	2	0	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTA----....................................................................................................................................................................................................................................................................................................	23	10	0.90	9	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	23	20	0.90	18	0	0	0	0	0	0	5	9	1	2	1	0	0	0	0	0	0
........................................................................................................................................AGCTTCCA-ACGGGGGGAGGATGTTG.......................................................................................................................................................................................................................................	25	9	0.89	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTG.......................................................................................................................................................................................................................................	22	9	0.89	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
...............................................................................................TG----TGTCTGCTTCCCCTTGAGGACTCT............................................................................................................................................................................................................................................................................	26	17	0.88	15	0	0	0	0	0	0	1	2	4	8	0	0	0	0	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTTA...........................................................................................................................................................................................................................................................	26	20	0.85	17	0	0	0	0	0	0	4	4	0	0	8	1	0	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCTC............................................................................................................................................................................................................................................................	27	20	0.85	17	0	0	0	0	0	0	0	1	0	0	0	0	16	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAA.....................................................................................................................................................................................................................................................................	18	20	0.85	17	0	0	0	0	0	0	0	12	2	0	3	0	0	0	0	0	0
...........................................................................................................................CTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	17	20	0.85	17	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGCA..................................................................................................................................................................................................................................................................	26	20	0.80	16	0	0	0	0	0	0	0	0	0	0	0	0	13	3	0	0	0
.....................................................................................................................AGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	21	20	0.80	16	0	0	0	0	0	0	0	0	0	0	0	0	13	3	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTGGGTC...................................................................................................................................................................................................................................	26	9	0.78	7	0	0	0	0	0	0	0	1	0	0	4	0	2	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTCT..........................................................................................................................................................................................................................................................................................	23	17	0.76	13	0	0	0	0	0	0	0	0	0	0	0	0	9	4	0	0	0
...................................................................................................................................AGCCAAGCTTCCA-ACGGGGGGAGGA............................................................................................................................................................................................................................................	25	7	0.71	5	0	0	0	0	0	0	2	1	1	0	1	0	0	0	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCCC.................................................................................................................................................................................................................................................................	28	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	12	2	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAG....................................................................................................................................................................................................................................................................	24	20	0.70	14	0	0	0	0	0	0	3	1	0	1	0	0	9	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	23	20	0.70	14	0	0	0	0	0	0	0	5	3	3	0	0	0	3	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAA.....................................................................................................................................................................................................................................................................	23	20	0.70	14	0	0	0	0	0	0	1	2	1	0	0	0	4	6	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCG.............................................................................................................................................................................................................................................................	24	20	0.70	14	0	0	0	0	0	0	8	5	0	0	1	0	0	0	0	0	0
.............................................................................................................TCCCCTTGAGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	29	20	0.70	14	0	0	0	0	0	0	0	0	1	0	0	0	12	1	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGA..............................................................................................................................................................................................................................................................	24	20	0.70	14	0	0	0	0	0	0	0	2	1	3	0	0	8	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTTA...........................................................................................................................................................................................................................................................	27	20	0.70	14	0	0	0	0	0	0	0	6	1	6	0	0	0	1	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTC............................................................................................................................................................................................................................................................	25	20	0.70	14	0	0	3	0	0	0	4	1	1	0	4	0	1	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCA........................................................................................................................................................................................................................................................................................	25	13	0.69	9	0	0	0	0	0	0	0	0	0	0	1	0	8	0	0	0	0
...............................................................................................TG----TGTCTGCTTCCCCTTGAGGACT..............................................................................................................................................................................................................................................................................	24	19	0.68	13	0	0	1	0	0	0	1	3	3	2	0	0	3	0	0	0	0
..........................................................................................CAAGCTG----TGTCTGCTTCCCCTTGA...................................................................................................................................................................................................................................................................................	24	15	0.67	10	0	0	0	1	0	0	1	2	3	3	0	0	0	0	0	0	0
........................................................................................................................................................GAGGATGTTGGGTCATGCAGCCGAAAA......................................................................................................................................................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................GTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	16	20	0.65	13	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0
.............................................................................GGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	24	11	0.64	7	0	0	0	0	0	0	1	0	0	4	0	0	2	0	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCCA.......................................................................................................................................................................................................................................................................................	26	13	0.62	8	0	0	0	0	0	0	1	0	0	1	0	0	6	0	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGA..............................................................................................................................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	0	4	3	1	0	4	0	0	0	0
..............................................................................................................CCCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	24	20	0.60	12	0	0	0	1	0	0	3	0	0	3	0	0	3	2	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAG...........................................................................................................................................................................................................................................................................................................	20	10	0.60	6	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCA.................................................................................................................................................................................................................................................................	21	20	0.60	12	0	0	0	0	0	0	0	5	0	3	3	0	0	1	0	0	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTA............................................................................................................................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	5	0	2	2	0	0	3	0	0	0	0
...............................................................................................................CCCTTGAGGACTCTGTTGGAAGCCAAA...............................................................................................................................................................................................................................................................	27	20	0.60	12	0	0	0	0	0	0	0	1	3	0	0	0	7	1	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTG..............................................................................................................................................................................................................................................................................................	19	16	0.56	9	0	0	0	0	0	0	0	1	5	2	0	0	0	1	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGGATGTTGGGTC...................................................................................................................................................................................................................................	25	9	0.56	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGGATGTTGGGT....................................................................................................................................................................................................................................	24	9	0.56	5	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGGATGTTGG......................................................................................................................................................................................................................................	22	9	0.56	5	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCCT.................................................................................................................................................................................................................................................................	28	20	0.55	11	0	0	1	0	0	0	0	0	0	0	0	0	7	3	0	0	0

droSec2

-----------------------------------------------------------------CTGGAGTAATAAGGCGGGCAGTGAACAAGCTG----TGTCTGCTTCCCCTTGAGGACTCTGTTGGAAGCCAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGCCAAAAA-TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................TGAACAAGCTG----TGTCTGCTTCCC........................................................................................................................................................................................................................................................................................	23	20	7.25	145	0	0	137	8
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	27	20	1.90	38	6	0	32	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	25	20	0.85	17	0	1	16	0
.......................................................................................GAACAAGCTG----TGTCTGCTTCCCC.......................................................................................................................................................................................................................................................................................	23	20	0.65	13	13	0	0	0
.....................................................................................................................AGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	25	20	0.40	8	1	0	7	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----TGTC................................................................................................................................................................................................................................................................................................	27	20	0.35	7	0	0	7	0
.......................................................................................GAACAAGCTG----TGTCTGCTTCCC........................................................................................................................................................................................................................................................................................	22	20	0.35	7	7	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	26	20	0.35	7	7	0	0	0
.............................................................................................................................................................TGTTGGGTCATGCAGCCGCCAAAAA-..................................................................................................................................................................................................................	25	3	0.33	1	0	0	1	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	27	20	0.30	6	0	2	4	0
......................................................................................TGAACAAGCTG----TGTCTGCTTCCCCT......................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	6	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAGCTT............................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	4
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----....................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	1	2	0
......................................................................................................................GGACTCTGTTGGAAGCCAAGCTTCCA-A.......................................................................................................................................................................................................................................................	27	20	0.15	3	3	0	0	0
................................................................................................................................................................TGGGTCATGCAGCCGCCA.......................................................................................................................................................................................................................	18	20	0.15	3	3	0	0	0
.....................................................................................GTGAACAAGCTG----TGTCTGCTTCCCC.......................................................................................................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	2	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCTTC...........................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	2
.........................................................................................................TGCTTCCCCTTGAGGACTCTGTTGGA......................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	2	0
..........................................................................TAAGGCGGGCAGTGAACAAGCTG----T...................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0
......................................................................................TGAACAAGCTG----TGTCTGCTT...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAAGCC.............................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.....................................................................................................................................CCAAGCTTCCA-ACGGGGGGAGGATGT.........................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
....................................................................................AGTGAACAAGCTG----TGTCTGCTTCCCCT......................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
...........................................................................AAGGCGGGCAGTGAACAAGCTG----....................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0
...............................................................................................................................................................TTGGGTCATGCAGCCGCCA.......................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAG....................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
............................................................................................AGCTG----TGTCTGCTTCCCCTTGAGGACTC.............................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0
..................................................................................................................TTGAGGACTCTGTTGGAAGCCAA................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0
............................................................................................................................................TCCA-ACGGGGGGAGGATGTTG.......................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTGG......................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
..............................................................................................................CCCCTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
...................................................................................................................................AGCCAAGCTTCCA-ACGGGGGGAGGA............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
..................................................................................................................................................CGGGGGGAGGATGTTGGG.....................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0
.............................................................................................................................................................TGTTGGGTCATGCAGCCGCCA.......................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1
...................................................................................................................................AGCCAAGCTTCCA-ACGGGGGGAGG.............................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
.......................................................................................................................................AAGCTTCCA-ACGGGGGGAGGATG..........................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1
................................................................................................................CCTTGAGGACTCTGTTGGAAGCCAAGC..............................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
.................................................................................................................CTTGAGGACTCTGTTGGAAGC...................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0
................................................................................................................................GGAAGCCAAGCTTCCA-ACGGGGGGAA..............................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
........................................................................AATAAGGCGGGCAGTGAACAAGCTG----TG..................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0
...................................................................................................................TGAGGACTCTGTTGGAAGCCAAG...............................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0
....................................................................................................................GAGGACTCTGTTGGAAGCCAAGCT.............................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0
..................................................................TGGAGTAATAAGGCGGGCAGTGAACA.............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..........................................................................TAAGGCGGGCAGTGAACAAGCT.........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
............................................................................................................TTCCCCTTGAGGACTCTGTTGGAAGCC..................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTG.......................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0

droYak3

-----------------------------------------------------------------CTGGAGTAATAAGACGGGCAGTGAACAAGCTG----TGTCTGTTTCCCCTTGAGGACTCTATTGGAAACCAAGCTTCCA-ACGGGGGGAGGATGTTGGGTCATGCAGCCGCAAAAAC-TGTGCAGTAGACTTATTTTATACTTTTAACATTGTAAGCCAAAAT------------------------------------AG-TCATTA----------------------A----TA---GCTGTTGCGATACCCAT-AGT-GC----------------------------ATCGCACTCTCTCTCTCTCT-------CTTTGTTAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................ATTGGAAACCAAGCTTCCA-ACGGGGGGAG..............................................................................................................................................................................................................................................	29	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9
.........................................................................................................................CTCTATTGGAAACCAAGCTTCCA-ACGG....................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TGAACAAGCTG----TGTCTGTTTCCCCT......................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TGAACAAGCTG----TGTCTGTTTCCCCTTGA...................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AAAC-TGTGCAGTAGACTTATTTTA..............................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGGAAACCAAGCTTCCA-ACGGGGGGA...............................................................................................................................................................................................................................................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACCAAGCTTCCA-ACGGGGGGAGGATG..........................................................................................................................................................................................................................................	26	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................TTGGAAACCAAGCTTCCA-ACGGGGGG................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGGAAACCAAGCTTCCA-ACGGGGG.................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGGAAACCAAGCTTCCA-ACGGGGGG................................................................................................................................................................................................................................................	25	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................GAAACCAAGCTTCCA-ACGGGGGGAG..............................................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................T-AGT-GC----------------------------ATCGCACTCTCTCTCTCTC.................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................T-AGT-GC----------------------------ATCGCACTCTCTCTCTCTCT-------.........	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGGATGTTG.......................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CCCAT-AGT-GC----------------------------ATCGCACTCTCTCTCT....................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AAGCTTCCA-ACGGGGGGAGGATG..........................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................T-AGT-GC----------------------------ATCGCACTCTCTCTCTC...................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................T-AGT-GC----------------------------ATCGCACTCTCTCTCTCT..................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AA---------------------------------------------------------------CAGGATTGACGAAGCGGGCAGTGAATAAGCTG----TGTCTGCTTCCCCTTAAGGATGCGATTGAAAACCACGCTTGTC-A-AC-----------------------------------AT-----------------------------TG----CAGAAACAATTAGTCCACGGCTATTCAGCTTTATCTATG---CAGATT-------------------------------AGCTGCA-------------G------------------------------------ATCGCACTCTCTCTCTCTCT---------------C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

-----------------------------------------------------------------CTGGAATCACCAAGCGCGCAGTCAACAAGCTG----TGCCTGCTGCCCCTTAAAGATGCTGTTGAAAGTCAGGCTTCCA-ACGGGGGGAGTATGTCGGGTCAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	24	14	25.50	357	0	121	2	0	0	2	10	80	141	1
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGGCT.............................................................................................................................................................................................................................................................	25	14	11.93	167	1	92	2	0	0	0	24	38	10	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGG...............................................................................................................................................................................................................................................................	23	14	5.07	71	0	55	0	0	1	0	7	4	4	0
..................................................................................................................TTAAAGATGCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	25	14	2.43	34	0	10	0	0	0	0	0	2	22	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCAG................................................................................................................................................................................................................................................................	22	14	1.93	27	0	9	0	0	0	0	15	0	3	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGGCTT............................................................................................................................................................................................................................................................	26	14	0.64	9	0	5	2	0	0	0	1	0	1	0
..................................................................................................................TTAAAGATGCTGTTGAAAGTCAGGCT.............................................................................................................................................................................................................................................................	26	14	0.57	8	0	3	1	0	0	0	1	1	2	0
..................................................................................................................TTAAAGATGCTGTTGAAAGTCAG................................................................................................................................................................................................................................................................	23	14	0.50	7	0	3	0	0	0	0	2	1	1	0
....................................................................................................................AAAGATGCTGTTGAAAGTCAGG...............................................................................................................................................................................................................................................................	22	15	0.47	7	0	7	0	0	0	0	0	0	0	0
....................................................................................................................AAAGATGCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	23	15	0.40	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACGGGG..................................................................................................................................................................................................................................................	23	16	0.38	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGTATGTCGGGT....................................................................................................................................................................................................................................	24	9	0.33	3	0	2	0	0	0	0	1	0	0	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGGCTTC...........................................................................................................................................................................................................................................................	27	14	0.29	4	0	0	0	0	0	0	0	4	0	0
..................................................................................................................TTAAAGATGCTGTTGAAAGTCAGG...............................................................................................................................................................................................................................................................	24	14	0.29	4	0	2	0	0	0	0	0	0	2	0
....................................................................................................................AAAGATGCTGTTGAAAGTCAGGCT.............................................................................................................................................................................................................................................................	24	15	0.27	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................TAAAGATGCTGTTGAAAGTC..................................................................................................................................................................................................................................................................	20	15	0.27	4	0	1	0	0	0	0	0	0	3	0
.........................................................................................................................TGCTGTTGAAAGTCAGGCTTCCA-AC......................................................................................................................................................................................................................................................	25	16	0.25	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................CAAGCTG----TGCCTGCTGCCCCTTAAAGA................................................................................................................................................................................................................................................................................	27	17	0.24	4	0	0	0	0	0	0	0	4	0	0
.............................................................................................................................................CCA-ACGGGGGGAGTATGTCGG......................................................................................................................................................................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................TGCTGTTGAAAGTCAGGCTTCCA-A.......................................................................................................................................................................................................................................................	24	18	0.22	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................AAGATGCTGTTGAAAGTCAGGCT.............................................................................................................................................................................................................................................................	23	15	0.20	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGGT..............................................................................................................................................................................................................................................................	24	14	0.14	2	0	1	0	0	0	0	1	0	0	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCAGGCC.............................................................................................................................................................................................................................................................	25	14	0.14	2	0	1	1	0	0	0	0	0	0	0
................................................................................................................CCTTAAAGATGCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	27	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................AAGATGCTGTTGAAAGTCAGG...............................................................................................................................................................................................................................................................	21	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................AAAGTCAGGCTTCCA-ACGGGGGG................................................................................................................................................................................................................................................	23	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................AAAGTCAGGCTTCCA-ACGGGGG.................................................................................................................................................................................................................................................	22	16	0.13	2	0	1	0	0	0	0	0	0	1	0
..............................................................................................................................TTGAAAGTCAGGCTTCCA-ACGGGG..................................................................................................................................................................................................................................................	24	16	0.13	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................AAAGATGCTGTTGAAAGTCA.................................................................................................................................................................................................................................................................	20	16	0.13	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................TGCTGCCCCTTAAAGATGCTGTTG........................................................................................................................................................................................................................................................................	24	17	0.12	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................TTCCA-ACGGGGGGAGTATGTCGG......................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................CCA-ACGGGGGGAGTATGTCGGGT....................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................CTGGAATCACCAAGCGCGC.....................................................................................................................................................................................................................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGTATGTCG.......................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................CGGGGGGAGTATGTCGGGT....................................................................................................................................................................................................................................	19	11	0.09	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................TCAGGCTTCCA-ACGGGGGGAGTATG..........................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................GAGTATGTCGGGTCAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACGGGGGGAG..............................................................................................................................................................................................................................................	27	13	0.08	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................TCAGGCTTCCA-ACGGGGGGAG..............................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................CAGGCTTCCA-ACGGGGGGAGTT............................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TTAAAGATGCTGTTGAAAGTCAGGCTT............................................................................................................................................................................................................................................................	27	14	0.07	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................TGCCCCTTAAAGATGCTGTTGAAAGT...................................................................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................CCCTTAAAGATGCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................CTTAAAGATGCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................TAAAGATGCTGTTGAAAGTCA.................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACGGGGGGA...............................................................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................GATGCTGTTGAAAGTCAGGCTTCCA-........................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................TTAAAGATGCTGTTGAAAGTC..................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................AGTCAGGCTTCCA-ACGGGGGG................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................AAGATGCTGTTGAAAGTCAGGCTT............................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GTCAGGCTTCCA-ACGGGGGG................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................AAAGATGCTGTTGAAAGTCAG................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TCAGGCTTCCA-ACGGGGGGA...............................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACG.....................................................................................................................................................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................CCCCTTAAAGATGCTGTTGAAAG....................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACGGGGG.................................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................AAAGTCAGGCTTCCA-ACGGG...................................................................................................................................................................................................................................................	20	16	0.06	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................GATGCTGTTGAAAGTCAGGCTT............................................................................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACGT....................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TGAAAGTCAGGCTTCCA-ACGG....................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................CAAGCTG----TGCCTGCTGCCCCTT.....................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................G----TGCCTGCTGCCCCTTAAAGATGC.............................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................GCTG----TGCCTGCTGCCCCTTAAAGATGC.............................................................................................................................................................................................................................................................................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TCAACAAGCTG----TGCCTGCTG...........................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................TGTTGAAAGTCAGGCTTCCA-A.......................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................TGCTGTTGAAAGTCAGGCTTCCA-........................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................GCTGTTGAAAGTCAGGCTTCCA-........................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGCTGTTGAAAGTCAGGCTT............................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................ATGCTGTTGAAAGTCAGGCTT............................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

-----------------------------------------------------------------CTGGAATCACCAAGCGCGCCGTCAACAAGCTG----TGCCTGCTGCCCCTTAAAGATGCTGTTGAAAGTCAGGTTTCCA-ACGGGGGGAGTATGTCGGGTTAAGCCGCTAAAA-----TAT------------------------------------------------------------------------TG---TAAATTATT------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................TCACCAAGCGCGCCGTCAACAAGCTG----....................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
............................................................................................................................................TCCA-ACGGGGGGAGTATGTC........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droWil2

TGATCAGCGCTGTTCTATTGACTATTTTCACACTCTTGCTACCAATATCGGTGACATTCATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................CACACTCTTGCTACCAATATCGGT.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.....................CTATTTTCACACTCTTGCTACCAATATC........................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..................................CTTGCTACCAATATCGGTGA...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................TGACTATTTTCACACTCTTGCTAC...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...............................ACTCTTGCTACCAATATCGGT.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..................................CTTGCTACCAATATCGGT.....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.............................ACACTCTTGCTACCAATATCGGT.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......................ATTTTCACACTCTTGCTAC...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.GATCAGCGCTGTTCTATTGACTATTTTC............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0

droVir3

G----------------------------------------------------------------CTGGAATCATCCGAAGAGCCGTAAGCAACCCG----TGTCTGCTGCCCCTTAAGGATTCTGTTGAAAGTCAGGCATCCA-ACGGGGGGAGTATGTTGGATTCTGCCGCAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................TTAAGGATTCTGTTGAAAGTCAGGC..............................................................................................................................................................................................................................................................	25	12	0.17	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................CCCCTTAAGGATTCTGTTGAAAGTC..................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CTTAAGGATTCTGTTGAAAGTCA.................................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AG---------------------------------------------------------------CTGGCGAGATAAGAAGAGCTACAAATAAGCTG----TGCTTGCTGCCCCTTAAGGATTCTGTTGAAGACTAAGTCTTCA-ACGGGGGGAGGATGTTGGGCTCAGCAATCATCGCTTC-----------------------------------------------------------------------------ATTGTAATTAAGAGCGGCAATTCATAGAATATGTTATCATGTAAGAGAATTTGTAACGGA-G------------------------------------ATCACGCTCTCCCTTTTGCG-------TTGTCTCAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................C-----------------------------------------------------------------------------ATTGTAATTAAGAGCGGCAATTCA..............................................................................................................	25	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................................................................C-----------------------------------------------------------------------------ATTGTAATTAAGAGCGGCAATTC...............................................................................................................	24	3	0.33	1	0	0	0	0	1	0
..........................................................................TAAGAAGAGCTACAAATAAGCTG----TGCT................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	5
.....................................................................CGAGATAAGAAGAGCTACAAATAAG...........................................................................................................................................................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TGTAACGGA-G------------------------------------ATCACGCTCTCCCT......................	24	20	0.15	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAGAATATGTTATCATGTAAGAGAAT....................................................................................	26	20	0.10	2	2	0	0	0	0	0
..........................................................................TAAGAAGAGCTACAAATAAGCTG----TGC.................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	2	0
..................................................................................................................................................................................CTTC-----------------------------------------------------------------------------ATTGTAATTAAGAGCGGC....................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
...............................................................................................................CCCTTAAGGATTCTGTTGAAGAC...................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
...................................................................................................................TAAGGATTCTGTTGAAGACTAAGTCT............................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
............................................................................AGAAGAGCTACAAATAAGCTG----TGCT................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................................................GGCTCAGCAATCATCGCTT....................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................GAGATAAGAAGAGCTACAAAT..............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................GAGATAAGAAGAGCTACAAATAA............................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...........................................................................AAGAAGAGCTACAAATAAGCTG----TGC.................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TATGTTATCATGTAAGAGAATTTGT................................................................................	25	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................TAAGTCTTCA-ACGGGGGGAGGATGTT........................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
...............................................................................................................CCCTTAAGGATTCTGTTGAAGA....................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ATCACGCTCTCCCTTTTGCG-------TTGTCTC..	27	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTGTAACGGA-G------------------------------------ATCACGCTCTCCCTTGG...................	28	20	0.05	1	1	0	0	0	0	0
..........................................................................TAAGAAGAGCTACAAATAAGCT.........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................C-----------------------------------------------------------------------------ATTGTAATTAAGAGCGGCA...................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................TTATCATGTAAGAGAATTTGTAACGGA-.........................................................................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CTCTCCCTTTTGCG-------TTGTC....	19	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................TTCTGTTGAAGACTAAGTCTT...........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................TAAGAAGAGCTACAAATAAGCTG----TGCTC...............................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TGTAACGGA-G------------------------------------ATCACGCTCTCCCC......................	24	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................TTTGTAACGGA-G------------------------------------ATCACGCTCTC.........................	23	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................CGGGGGGAGGATGTTGGGCTC..................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................AGACTAAGTCTTCA-ACGGGGGGAGGAT...........................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
............................................................................AGAAGAGCTACAAATAAGCTG----TGCTTCA.............................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..........................................................................TAAGAAGAGCTACAAATAAGCC.........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................GATTCTGTTGAAGACTAAGTCTTCA-AC......................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.....................................................................CGAGATAAGAAGAGCTACAA................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droGri2

TGATTAGCGCCGTTTTGTTGACCGCTTTCACATTGCTGCTACCCATTTCGGTGACATTTATCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.GATTAGCGCCGTTTTGTTGACCGCTTT.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
.......CGCCGTTTTGTTGACCGCTT..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dan_1262

scaffold_13099:3262302-3262452 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-40.4	-40.4	-40.4