ID:

dan_1258

 Coordinate:

scaffold_13099:2705292-2705442 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.8 -33.7 -33.6

Flybase annnotation

exon [dana_GLEANR_7357:10]; CDS [Dana\GF22840-cds]; intron [Dana\GF22840-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_12984:462333-462357 +
  2. dan_1258  scaffold_13099:2705301-2705325 +
  3. scaffold_13337:21619291-21619315 -
  4. scaffold_13499:1203109-1203133 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGAAGGATGGGAGTTTCAAGGGATTCCTCTTCCTTTTCTTATATCTAATAATATAAGATGCGGGGCGCCACCTAGCGGACTGCGACTCAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTTCCTTTCTTGTTTTAATGTCAATTTAATCTATCTATATATATATATCTATCTATATATAATCTATCTATCATAGGATCTTCAGAAAAAGCACGCTGCGACTTTTTAACTGAGGCTTCTATTATG
**************************************************.....((((((((..(((......)))..))))(((......(((((((.....(((((((((......)))))))))...)))))))......))).................((((((((......))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M058
embryo
 M044
female body
 V106
head
 V055
head
 V039
embryo
.............................................................................................................................................................................................................TTCAGAAAAAGCACGCTGCGACT....................... 23 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................TTCAGAAAAAGCACGCTGCGAC........................ 22 0 1 1.00 1 1 0 0 0 0 0
............GTTTCAAGGGATTCCTCTTCCT......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................TAGGATCTTCAGAACGAGCGC................................ 21 3 2 0.50 1 0 0 0 0 1 0
.........................................TATCTAATAATATAAGATGCGGGGC......................................................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0
...........................................TCTAATAATATAAGATGCGGGGCGCCA..................................................................................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0
...........................................................GCGGGGCGCCACCTAGCGGACTGCG....................................................................................................................................................................... 25 0 4 0.25 1 0 0 0 1 0 0
.............................................................................GACTGCGACTCAACTGCAAGGGT....................................................................................................................................................... 23 0 20 0.25 5 0 0 0 5 0 0
.....................................................TAAGATGCGGGGCGCCACCTAGC............................................................................................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0
................................................TAATATAAGATGCGGGGCGCCAC.................................................................................................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0
.......................................TATATCTAATAATATAAGATGCGG............................................................................................................................................................................................ 24 0 7 0.14 1 1 0 0 0 0 0
...............................................................GGCGCCACCTAGCGGACTGCGA...................................................................................................................................................................... 22 0 20 0.10 2 0 0 0 2 0 0
...................................................................CCACCTAGCGGACTGCGACTCAAC................................................................................................................................................................ 24 0 20 0.10 2 0 2 0 0 0 0
.............................................................GGCGCGCCACCTAGCGGACTGCGA...................................................................................................................................................................... 24 1 11 0.09 1 0 1 0 0 0 0
......................ATTAGACTTCCTTTTCTTAT................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1
.............................................................................GACTGCGACTCAACTGCAAGGGTATATA.................................................................................................................................................. 28 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................GCTCCTGCCGAAGTTTCC......................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TCTTCCTACCCTCAAAGTTCCCTAAGGAGAAGGAAAAGAATATAGATTATTATATTCTACGCCCCGCGGTGGATCGCCTGACGCTGAGTTGACGTTCCCATATATTTGAAGCCGAGGCGGGCTTCAAAGGAAAGAACAAAATTACAGTTAAATTAGATAGATATATATATATAGATAGATATATATTAGATAGATAGTATCCTAGAAGTCTTTTTCGTGCGACGCTGAAAAATTGACTCCGAAGATAATAC
**************************************************.....((((((((..(((......)))..))))(((......(((((((.....(((((((((......)))))))))...)))))))......))).................((((((((......))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M058
embryo
 V106
head
 V039
embryo
 V055
head
 M044
female body
..............................................................CCCGCGGTGGATCGCCTGACGCT...................................................................................................................................................................... 23 0 4 0.50 2 0 2 0 0 0 0
........................................................................................................................CCTTCAAAGGAAAGAACACA............................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CTGAAAAATCGACGACGAAGAT..... 22 3 3 0.33 1 1 0 0 0 0 0
................................................................CGCGGTGGATCGCCTGACGCT...................................................................................................................................................................... 21 0 20 0.15 3 0 0 3 0 0 0
........................AGGAGAAGGAAGAGGATATA............................................................................................................................................................................................................... 20 2 7 0.14 1 1 0 0 0 0 0
........................AGGAGAAGGAAAACAAAATA............................................................................................................................................................................................................... 20 2 8 0.13 1 1 0 0 0 0 0
.......................AAGGAGAAGGAAAAGAAAA................................................................................................................................................................................................................. 19 1 11 0.09 1 1 0 0 0 0 0
........................AGGAGAAGGCAAGGAATA................................................................................................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 1 0
........................ATGAGAAGGAACAGAACATA............................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
.............................................................CCCCGCGGTGCATCGCCTGACGCT...................................................................................................................................................................... 24 1 14 0.07 1 0 0 0 1 0 0
..............................AGGAAAAGAAAACAGATTA.......................................................................................................................................................................................................... 19 2 18 0.06 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................CGTGCGACGTTGAAAAAATT................ 20 3 20 0.05 1 0 0 0 0 0 1
.......................AAGAAGGAGGAAAAGAATA................................................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0
.............................................................CCCCGCGGTGGATCGCCTGACGCTGC.................................................................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0 0
...............................................................CCGCGGTGGATCGCCTGACGCTGAGTTG................................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0 0 0
.......................GAGGAGAAGGAAAAAAATA................................................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0
....................CCCCAGGAGAAGGAAAACAA................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13099:2705242-2705492 + dan_1258 AGAAGGATGGGAGTTT--------------------------------------CAAG--------------------------------------------------------GGATTCCTCT-------TCCTTTTC---TTATATC---TAATAATAT-----------------AAGAT-GCGGGGC-GCCACCT---AGCG--GACT--GC-----------------GACTCAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTT----T-C-CTTTCTTGTTTTAATGTCAATTTAAT-------CTATCTAT--------------ATATATA-------------------------------------TATCTATCT---------------------------------------------ATATATAATCTATCTATCATAGGATC--------TTCAGAAAAAGCACGC-TG----------------CGACTT---TTTAACTGAGGCTTCTATTATG
droBip1 scf7180000396096:3624-3897 - AGAAGTTTGGGACTTT--------------------------------------TTTT-------------------------------------------------------------------AGATTTTGT------------ATTTTA-GTAAAT--TGGTTTTATTATGATGTAATCATAAGGATCGGCCAACTATATCCGATGTTT--GCGATATATATCC-----GGTTTTAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTTATATTTA----AGT--------T----------------------------------------------------ATTAACC-----------------TTAGTTGTCTTT-AAGTATAATTTGATATTCGA---------------------T------------TTTTAATAATCATGAAAAAGTCAGT-TA----------------CATATTT--TTTATTTGAAGACTGGCT--TA
droKik1 scf7180000302517:648625-648862 + ATAAGTATAGG-------------------------------------------------------------------------------------------TAAAATGTTATGAAACTCTGTTTAGTGTCTGTTTTCGGCATTATAAT---TTATAATAT-----------------AAATA-------------------------------------------TGA---AAACCAATCTGCAAGGGTATACAAACTTCGGCG--TGCCGAAGTTAGCTT-C-CTTTCTTGTTTTAAA-T-AATTTAAT-------TAATGTAT-----------------------------------------------------------------------------------TC----------------GTTTTTTTTTAATATTTATTTTAC---TCGAATTATT--------TTCACATATATTTTTTTTA----------------TGATTT---TATAACTGAAGTATATTTTAT-
droFic1 scf7180000454044:1170928-1171137 + AGAAAAATCGT-CT-----------------------------------------TAGC--------------------------------TTCGATGTTGTCTAGCCTTTA------------------------------------------------------------------------------------------TGCG--TTTTGTTCGACATATTT----------GATGACTGCAAGGGTATATAAGCTTCGGCT--TGCCGAAGCTAGCTT-C-CTTTCTTGTTAAAAGTTCA----AAA-------CTTGCA----------A-------------------------------------------------TGTTT--------------------GA---------------------------GTTTCT--TCTGTTTATCAAACGAAC--------TTCAAAAAAAATATTCTTG----------------CGAATCT-GTCAAATAAAAACTTTTAT----
droEle1 scf7180000486729:1320-1522 + ATACGCAAGTAAATCA---------------------------------------TAAT--------------------------------TTTA-------------------------------------------------ATGTTTTC-AAAAATATTTAA------------------------------------------TTCTT--GC-------------------GATAGCTGCAAGGGTATATGAACTTCGGCT--TGCCGAGGTTTGCTT-T-CTTTCTTGTTTTGATAT-AATTTAAA-------CC----------------------------------------------------GTAAATCGAAAATATTTAACCATTACTAAA--------------------------------------------------TGTC-CAAGGAC--------TAAACAAAAATCG-------------------------CTT---CTTAACTTAAACTTCTTTCACG
droRho1 scf7180000778496:20096-20332 - AGGAAGTTGGGATTTTTTATGAG----------------------------------T-ATT-------------------------------------------------------AAGAATG-------CATCATAT---GAATAATTTTGGAGAATAT-----------------AAT--------------------------------------TTA----CAGA-----GTATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTTTATAT-ATTTT-----------------------------------------------CACACTCCTGCTAAACATTTTATCGTGT-------------------------------------------------------ATATTTATTCAGC---GTGAAAAATC--------TGCACAAAAAGGCCAA-AC----------------AGCATT---TTTGATT--GGCTTTCGTTACA
droBia1 scf7180000301346:74880-75099 - ATAATATTGGGAATAT---------------------------------------ACAT--------------------------------TTTT-------------------------------------------------ATACTTTT-AAAAATTTCGAATTCAATTTAATAAAA---------------------------------------TTA----CTGATTTTTTTTATCTACAAGGGTTTACAAACTTCGGCT--TGCCGAAGTTAACTT-C-CTTTCTTGTTATATTT--ATT--AATTAATTGCTTATAC----------A-------------------------------------------------TACCTATCCACTTATATTTTCCATT--------------------------------------------------GAA-------------ACTAAAATCACGC-CACA--------------TTAGTT---CTT---TAAGTGTTCT---ATT
droTak1 scf7180000414328:1081-1332 + AATAGAAAGAA-CTTT--------------------------------------ATAG-AAAGTAGGCTTTT----------------------------------------------------------------------TGATTTT---TGACAATGT-----------------AAAAA--------------------------------CAACATTTTA-GGT---AGGCATACCTGCAAGGGTATATAAACTTCGGCT--GGCCGAAGTTAACTT-C-CTTTCTTGTTTTTTTG--ATTA-TTT-------CTATGG----------G-------------------------------------------------AGCC-ATAAGATATAGTGGTCCGATCC----------------GGCTCGTTCCGACATATGTACTAC------------CTGCAAT-----AGAAAGAAGACTTTTG--GGAAAGTTTCATTGCGATAGCTTTAAAACTGAGG-----------
droEug1 scf7180000408984:553705-553769 - AATCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TAACAGGATC--------TTCAGAAAAAGCGCGA-TG----------------TGACTT---TTTGACAGAGGCTTCTATTATG
dm3 chr4:639311-639368 + TATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGTC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGCTTCTATTATG
droSim2 4:448811-448866 + TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGCTTCTATTATG
droSec2 scaffold_30:361712-361767 + TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGCTTCTATTATG
droYak3 4:691476-691529 + ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATC--------TTCGGAAAAAGCTCGC-TG----------------TGACTT---TTTGACAGAGGCTTCTATTATG
droEre2 scaffold_4784:22518764-22518910 + AGTCCTTAAT--CCTG------TTAATCGAAGTGTATAAATTAAAGTACAGACTAAAG--------------------------------------------------------TGTTCTCAC-------CTGTTTTTGGT--------------------------------------------------------------------------ATACATAT------------ATTTTCTGCAAGGGTATATAACCATCGGCT--TGCCAAAGCTATCTT-C-T--TCTCGTTTTTACTTGAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA
dp5 Unknown_group_233:26835-26840 - ATAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_42:445681-445746 + AATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCATAGGATC--------TTCGGAAAAAGCGCGT-TG----------------TGATTT---TTTGACGGAAGCTTCAATAATG
droWil2 scf2_1100000004943:746969-747173 - GCAAACATTAGCCTTT--------------------------------------TTAG-ATA-------------------------------------------------------AAACGTT-------TTCCACTT---TGATGGCTATGGGTAAGGC-----------------AAG------------------------------------AGTTA----CCAA-----ATAAGTTGCAAGGGTATTCAAACTTTGATG-CGGTCGAAGTTAGCCC-CGGCCTTTTGGATTGACAC---GTACAT-------GTATGTATGTATGTACATATATACGTACATATGTCTTC----------------------------------------------------------------------------------A-----------------------CC--------CTTCTACATAGCATGC-TG----------------CGTCTT-------------------------
droVir3 scaffold_12891:225588-225796 + ATCTTGACCAAACTT--------------------------------------------------GGCATTTACTATTTTCCCGGTACTTCTTAGATGGGGGCAAAGCACCA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGGGTCTGCAAGGGTATTAGATCTTTGGCG--TGCCGAAGATAGCCTTC-CTTTCTCGTTATTATCTGATAT-TAT-------CTCTCT----------A-------------------------------------------------TACCTGTGACCTTATATGGTCCAATAT----------------AATT---------------AACATCTAGCT--------------------------------TA----------------TGACCT-------------------------
droMoj3 scaffold_6498:1158194-1158270 + ATGCATATCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTCTCAGGGTC--------TTCAGAGAAGGCGCGT-TG----------------CGATTT---TCTAACTGAGGCTTCTATAATG
droGri2 scaffold_14822:808061-808167 - TCAACTTTCT--------ACAGA---------------------------------------------------------------------------------------------------------------------------------------TAT-----------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTGTATATTTTTTT----------------------------------------------------------------------------------ATCTCTTATCT---TAACGTAGGTTC--------TTCGGAAAAGGCACGT-TG----------------CGACTT---TCTGACTGAGGCCTCAATAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGAAGGATGGGAGTTT--------------------------------------CAAG--------------------------------------------------------GGATTCCTCT-------TCCTTTTC---TTATATC---TAATAATAT-----------------AAGAT-GCGGGGC-GCCACCT---AGCG--GACT--GC-----------------GACTCAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTT----T-C-CTTTCTTGTTTTAATGTCAATTTAAT-------CTATCTAT--------------ATATATA-------------------------------------TATCTATCT---------------------------------------------ATATATAATCTATCTATCATAGGATC--------TTCAGAAAAAGCACGC-TG----------------CGACTT---TTTAACTGAGGCTTCTATTATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAAAAAGCACGC-TG----------------CGACT..........................2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGAAAAAGCACGC-TG----------------CGAC...........................2211.001000010
............GTTT--------------------------------------CAAG--------------------------------------------------------GGATTCCTCT-------TCCT...................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................................................................................................................................................TATC---TAATAATAT-----------------AAGAT-GCGGGGC-..........................................................................................................................................................................................................................................................................................................................................................2540.251010000
...................................................................................................................................................TC---TAATAATAT-----------------AAGAT-GCGGGGC-GCCA......................................................................................................................................................................................................................................................................................................................................................2740.251010000
........................................................................................................................................................................................GCGGGGC-GCCACCT---AGCG--GACT--GC-----------------G................................................................................................................................................................................................................................................................................................................2540.251000001
................................................................................................................................................................................................................GACT--GC-----------------GACTCAACTGCAAGGGT................................................................................................................................................................................................................................................................................................23200.255000005
................................................................................................................................................................T-----------------AAGAT-GCGGGGC-GCCACCT---AGC.............................................................................................................................................................................................................................................................................................................................................2350.201010000
...........................................................................................................................................................TAATAT-----------------AAGAT-GCGGGGC-GCCAC.....................................................................................................................................................................................................................................................................................................................................................2350.201010000
...............................................................................................................................................TATATC---TAATAATAT-----------------AAGAT-GCGG..............................................................................................................................................................................................................................................................................................................................................................2470.141000010
............................................................................................................................................................................................GGC-GCCACCT---AGCG--GACT--GC-----------------GA...............................................................................................................................................................................................................................................................................................................22200.102000002
.................................................................................................................................................................................................CCACCT---AGCG--GACT--GC-----------------GACTCAAC.........................................................................................................................................................................................................................................................................................................24200.102020000
................................................................................................................................................................................................................GACT--GC-----------------GACTCAACTGCAAGGGTATATA...........................................................................................................................................................................................................................................................................................28200.051100000
droBip1
AGAAGTTTGGGACTTT--------------------------------------TTTT-------------------------------------------------------------------AGATTTTGT------------ATTTTA-GTAAAT--TGGTTTTATTATGATGTAATCATAAGGATCGGCCAACTATATCCGATGTTT--GCGATATATATCC-----GGTTTTAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTTATATTTA----AGT--------T----------------------------------------------------ATTAACC-----------------TTAGTTGTCTTT-AAGTATAATTTGATATTCGA---------------------T------------TTTTAATAATCATGAAAAAGTCAGT-TA----------------CATATTT--TTTATTTGAAGACTGGCT--TASizeHit CountTotal NormTotal
No Reads
droKik1
ATAAGTATAGG-------------------------------------------------------------------------------------------TAAAATGTTATGAAACTCTGTTTAGTGTCTGTTTTCGGCATTATAAT---TTATAATAT-----------------AAATA-------------------------------------------TGA---AAACCAATCTGCAAGGGTATACAAACTTCGGCG--TGCCGAAGTTAGCTT-C-CTTTCTTGTTTTAAA-T-AATTTAAT-------TAATGTAT-----------------------------------------------------------------------------------TC----------------GTTTTTTTTTAATATTTATTTTAC---TCGAATTATT--------TTCACATATATTTTTTTTA----------------TGATTT---TATAACTGAAGTATATTTTAT-SizeHit CountTotal NormTotal
No Reads
droFic1
AGAAAAATCGT-CT-----------------------------------------TAGC--------------------------------TTCGATGTTGTCTAGCCTTTA------------------------------------------------------------------------------------------TGCG--TTTTGTTCGACATATTT----------GATGACTGCAAGGGTATATAAGCTTCGGCT--TGCCGAAGCTAGCTT-C-CTTTCTTGTTAAAAGTTCA----AAA-------CTTGCA----------A-------------------------------------------------TGTTT--------------------GA---------------------------GTTTCT--TCTGTTTATCAAACGAAC--------TTCAAAAAAAATATTCTTG----------------CGAATCT-GTCAAATAAAAACTTTTAT----SizeHit CountTotal NormTotal
No Reads
droEle1
ATACGCAAGTAAATCA---------------------------------------TAAT--------------------------------TTTA-------------------------------------------------ATGTTTTC-AAAAATATTTAA------------------------------------------TTCTT--GC-------------------GATAGCTGCAAGGGTATATGAACTTCGGCT--TGCCGAGGTTTGCTT-T-CTTTCTTGTTTTGATAT-AATTTAAA-------CC----------------------------------------------------GTAAATCGAAAATATTTAACCATTACTAAA--------------------------------------------------TGTC-CAAGGAC--------TAAACAAAAATCG-------------------------CTT---CTTAACTTAAACTTCTTTCACGSizeHit CountTotal NormTotal
No Reads
droRho1
AGGAAGTTGGGATTTTTTATGAG----------------------------------T-ATT-------------------------------------------------------AAGAATG-------CATCATAT---GAATAATTTTGGAGAATAT-----------------AAT--------------------------------------TTA----CAGA-----GTATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTTTATAT-ATTTT-----------------------------------------------CACACTCCTGCTAAACATTTTATCGTGT-------------------------------------------------------ATATTTATTCAGC---GTGAAAAATC--------TGCACAAAAAGGCCAA-AC----------------AGCATT---TTTGATT--GGCTTTCGTTACASizeHit CountTotal NormTotal
No Reads
droBia1
ATAATATTGGGAATAT---------------------------------------ACAT--------------------------------TTTT-------------------------------------------------ATACTTTT-AAAAATTTCGAATTCAATTTAATAAAA---------------------------------------TTA----CTGATTTTTTTTATCTACAAGGGTTTACAAACTTCGGCT--TGCCGAAGTTAACTT-C-CTTTCTTGTTATATTT--ATT--AATTAATTGCTTATAC----------A-------------------------------------------------TACCTATCCACTTATATTTTCCATT--------------------------------------------------GAA-------------ACTAAAATCACGC-CACA--------------TTAGTT---CTT---TAAGTGTTCT---ATTSizeHit CountTotal NormTotal
No Reads
droTak1
AATAGAAAGAA-CTTT--------------------------------------ATAG-AAAGTAGGCTTTT----------------------------------------------------------------------TGATTTT---TGACAATGT-----------------AAAAA--------------------------------CAACATTTTA-GGT---AGGCATACCTGCAAGGGTATATAAACTTCGGCT--GGCCGAAGTTAACTT-C-CTTTCTTGTTTTTTTG--ATTA-TTT-------CTATGG----------G-------------------------------------------------AGCC-ATAAGATATAGTGGTCCGATCC----------------GGCTCGTTCCGACATATGTACTAC------------CTGCAAT-----AGAAAGAAGACTTTTG--GGAAAGTTTCATTGCGATAGCTTTAAAACTGAGG-----------SizeHit CountTotal NormTotal
No Reads
droEug1
AATCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-TAACAGGATC--------TTCAGAAAAAGCGCGA-TG----------------TGACTT---TTTGACAGAGGCTTCTATTATGSizeHit CountTotal NormTotal
No Reads
dm3
TATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGTC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGCTTCTATTATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------TTCGGAAAAAGCGCGC-TG----------------TGAT...........................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200050000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAAAAAGCGCGC-TG----------------TGATTT---C.....................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000004000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------TGATTT---CTTGACAGAGGCTTCTAT....2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGC-TG----------------TGATTT---CTTGAC................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTT---CTTGACAGAGGC..........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCGC-TG----------------TGATTT---CTTGACAGA.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---C.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGC..........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------TTCGGAAAAAGCGCGC-TG----------------TGATT..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCGCGC-TG----------------TGATTT---CT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAAAAAGCGCGC-TG----------------TGA............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------TGATTT---CTTGACAGAGGCT.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------TGATTT---CTTGACAGAGGCT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGC-TG----------------TGATTT---CTTGACAGAGGC..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-TG----------------TGATTT---CTTGACAGAGGCTT........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCGCGC-TG----------------TGATTT---CTTGA.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------TTCGGAAAAAGCGCGC-TG----------------TGA............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAAAAGCGCGC-TG----------------TGATTT---CTTG..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTT---CTTGACAGAGGCTTCT......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------TGATTT---CTTGACAGAGG...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTC--------TTCGGAAAAAGCGCGC-.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGCGCGC-TG----------------TGATTT---C.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------TGATTT---CTTGACAGAGGCTTC.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCGC-TG----------------TGATTT---CTTGA.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGC-TG----------------TGATTT---CTTGACAGAGGC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------TGATTT---CTTGACAGAGGCTT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCGC-TG----------------TGATTT---CTTGACAGAG............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGCTTCTATTATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---......................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---C.....................2711.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCGCGC-TG----------------TGATTT---CTTGAC................2411.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTT---CTTGACAGAGGC..........1811.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------TTCGGAAAAAGCGCGC-TG----------------TGAT...........................2411.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGCGC-TG----------------TGATTT---CTTGAC................2311.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGC-TG----------------TGATTT---CTTGACAGAGGC..........2711.00100000010000000000
droSec2
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATC--------TTCGGAAAAAGCGCGC-TG----------------TGATTT---CTTGACAGAGGCTTCTATTATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------TGATTT---CTTGACAGAGGCTTC.......2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------TTCGGAAAAAGCGCGC-T................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---CTTGACAGAGGCTTCTATTATG2411.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---CTTGACAGAGGCTTCTAT....2011.0011000
droYak3
ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATC--------TTCGGAAAAAGCTCGC-TG----------------TGACTT---TTTGACAGAGGCTTCTATTATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATC--------TTCGGAAAAAGCTCGC-TG----------------TGACT..........................2711.00101000000000
.CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATC--------TTCGGAAAAAGCT.....................................................2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTT---TTTGACAGAGGCTT........1911.00100000010000
droEre2
AGTCCTTAAT--CCTG------TTAATCGAAGTGTATAAATTAAAGTACAGACTAAAG--------------------------------------------------------TGTTCTCAC-------CTGTTTTTGGT--------------------------------------------------------------------------ATACATAT------------ATTTTCTGCAAGGGTATATAACCATCGGCT--TGCCAAAGCTATCTT-C-T--TCTCGTTTTTACTTGAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
ATAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCATAGGATC--------TTCGGAAAAAGCGCGT-TG----------------TGATTT---TTTGACGGAAGCTTCAATAATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGT-TG----------------TGATTT---TTTGACGGA.............2411.001000001
droWil2
GCAAACATTAGCCTTT--------------------------------------TTAG-ATA-------------------------------------------------------AAACGTT-------TTCCACTT---TGATGGCTATGGGTAAGGC-----------------AAG------------------------------------AGTTA----CCAA-----ATAAGTTGCAAGGGTATTCAAACTTTGATG-CGGTCGAAGTTAGCCC-CGGCCTTTTGGATTGACAC---GTACAT-------GTATGTATGTATGTACATATATACGTACATATGTCTTC----------------------------------------------------------------------------------A-----------------------CC--------CTTCTACATAGCATGC-TG----------------CGTCTT-------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................TGCAAGGGTATTCAAACTTTGATG-C...............................................................................................................................................................................................................................................................................2512.00202000
............................................................TA-------------------------------------------------------AAACGTT-------TTCCACTT---TGATGGCTA...................................................................................................................................................................................................................................................................................................................................................................................................2630.33100010
............................................................TA-------------------------------------------------------AAACGTT-------TTCCACTT---TGATGGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................2730.33101000
....................................................................................................................................TCCACTT---TGATGGCTATGGGTAAGG..........................................................................................................................................................................................................................................................................................................................................................................................25180.11200020
.........................................................................................................................................TT---TGATGGCTATGGGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
..........................................................................................................................................................................................................................................................................CGGTCGAAGTTAGCCC-CGGCCT.........................................................................................................................................................................................................................................................22200.05101000
droVir3
ATCTTGACCAAACTT--------------------------------------------------GGCATTTACTATTTTCCCGGTACTTCTTAGATGGGGGCAAAGCACCA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGGGTCTGCAAGGGTATTAGATCTTTGGCG--TGCCGAAGATAGCCTTC-CTTTCTCGTTATTATCTGATAT-TAT-------CTCTCT----------A-------------------------------------------------TACCTGTGACCTTATATGGTCCAATAT----------------AATT---------------AACATCTAGCT--------------------------------TA----------------TGACCT-------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCCGAAGATA....................................................................................................................................................................................................................................................................27200.95190000000000000000000000000000001000180000000000000000000000000000
...................................................................................................................................................................................................................T---------A----TGAAAAGGTTGGGTCTGCAAGGG.................................................................................................................................................................................................................................................................................................25200.459000000000000000000000000000000000000090000000000000000000000000
......................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCG--TGC............................................................................................................................................................................................................................................................................22200.408000000000080000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................T---------A----TGAAAAGGTTGGGTCTGCAAGGGT................................................................................................................................................................................................................................................................................................26200.357000000000000000000000000000000000007000000000000000000000000000
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGC............................................................................................................................................................................................................................................................................19200.357000000070000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCG--TG.............................................................................................................................................................................................................................................................................26200.357000000000000000000000000000000070000000000000000000000000000000
......................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCG--TGCC...........................................................................................................................................................................................................................................................................23200.306000000005000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGG...................................................................................................................................................................................................................................................................................22200.255000000001000000000000000000040000000000000000000000000000000000
.............................................................................................................................................................................................................G--CATT---------A----TGAAAAGGTTGGGTC.........................................................................................................................................................................................................................................................................................................21200.255000000000000000000000000000000410000000000000000000000000000000
...............................................................................................................................................................................................................................................TCTGCAAGGGTATTAGATCTTTGGC..................................................................................................................................................................................................................................................................................25200.255000000000000000000000000000100040000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTTCTCGTTATTATCTGATAT-TAT-------C...........................................................................................................................................................................................................................2540.251000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................TGAG--CATT---------A----TGAAAAGGTTGGGTCTG.......................................................................................................................................................................................................................................................................................................26200.255000000000000000000000000000030000000010100000000000000000000000
..........................................................................................................................................................................................................TGAG--CATT---------A----TGAAAAGGTTGGGTCTGC......................................................................................................................................................................................................................................................................................................27200.204000001000000000000000000000000000003000000000000000000000000000
..................................................................................CGGTACTTCTTAGATGGGGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000000000000010000000000000000000000000000
.......................................................................................CTTCTTAGATGGGGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171000000000000000000000000001000000000000000000000000000000000000
..............................................................................TTCCCGGTACTTCTTAGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................CA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGGG...........................................................................................................................................................................................................................................................................................................24130.152000000000000000000000000000010000000010000000000000000000000000
.............................................................................................................................................................................................................G--CATT---------A----TGAAAAGGTTGGGTCTG.......................................................................................................................................................................................................................................................................................................23200.153000000000000000000003000000000000000000000000000000000000000000
...................................................................................................................................................................................................................T---------A----TGAAAAGGTTGGGTCTGCAAG...................................................................................................................................................................................................................................................................................................23200.153000000000000000000000000010000000000020000000000000000000000000
.....................................................................TTTACTATTTTCCCGGTACTTCTTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.153000000000000000000000000020000001000000000000000000000000000000
..................................................................................................................................................................................................................................................GCAAGGGTATTAGATCTTTGGCG--TGC............................................................................................................................................................................................................................................................................26200.102000002000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGGGTATTAGATCTTTGGCG--TGCC...........................................................................................................................................................................................................................................................................24200.102000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................A------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTG.............................................................................................................................................................................................................................................................................................................21200.102000000000000000000000001000000000000000100000000000000000000000
...........................................................................................................................................................................................................GAG--CATT---------A----TGAAAAGGTTGGG...........................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000020000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCG--T..............................................................................................................................................................................................................................................................................25200.102000000000000000000002000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TCTGCAAGGGTATTAGATCTTTGGCG--...............................................................................................................................................................................................................................................................................26200.102000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................TT---------A----TGAAAAGGTTGGGTCTGC......................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000000100010000000000000000000000000000
............................................................................................................................................................................................................AG--CATT---------A----TGAAAAGGTTGGGTCTGC......................................................................................................................................................................................................................................................................................................25200.102000000000000000000002000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AAGGGTATTAGATCTTTGGCG--TGCCGA.........................................................................................................................................................................................................................................................................27200.102000000000020000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CATT---------A----TGAAAAGGTTGGGTCTGC......................................................................................................................................................................................................................................................................................................23200.102000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCC...........................................................................................................................................................................................................................................................................20200.102000000200000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TGAG--CATT---------A----TGAAAAGGTTGGGTCT........................................................................................................................................................................................................................................................................................................25200.102000000000000000000001000100000000000000000000000000000000000000
.............................................................................................................................................................................................................G--CATT---------A----TGAAAAGGTTGGGTCTGCAA....................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000020000000000000000000000000000000000000
....................................................................................................................................................................................................................................AAAAGGTTGGGTCTGCAAGGGTAT..............................................................................................................................................................................................................................................................................................24200.102000000000000000000000000002000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCG--TGC............................................................................................................................................................................................................................................................................27200.102000000001100000000000000000000000000000000000000000000000000000
..............................................................................................................CA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGGGTC.........................................................................................................................................................................................................................................................................................................26120.081000000000000000000000001000000000000000000000000000000000000000
............................................................................................................ACCA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGGG...........................................................................................................................................................................................................................................................................................................26130.081000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................CA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGGGT..........................................................................................................................................................................................................................................................................................................25130.081000000000000000000000000000001000000000000000000000000000000000
............................................................................................................ACCA------------------------------------------------------------------------------------------TGAG--CATT---------A----TGAAAAGGTTGG............................................................................................................................................................................................................................................................................................................25130.081000000000000000000000000000010000000000000000000000000000000000
..........................................................................TATTTTCCCGGTACTTCTTAGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.071000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGGGTATTAGATCTTTGGCG--TGCCGA.........................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................AG--CATT---------A----TGAAAAGGTTGGG...........................................................................................................................................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATT---------A----TGAAAAGGTTGGGTCTGC......................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................................................................................................AAGGTTGGGTCTGCAAGGGTATTAGA..........................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................TGAAAAGGTTGGGTCTGCAAGGG.................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................GAG--CATT---------A----TGAAAAGGTTGGGTC.........................................................................................................................................................................................................................................................................................................23200.051000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGATCTT......................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................GTATTAGATCTTTGGCG--TGCCGAAGATA....................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................AG--CATT---------A----TGAAAAGGTTGGGTCTGCAA....................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TAGATCTTTGGCG--TGCCGAAGATAGC..................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................A----TGAAAAGGTTGGGTCTGCAA....................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TG.............................................................................................................................................................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................T---------A----TGAAAAGGTTGGGTCTGCAAGG..................................................................................................................................................................................................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TGAG--CATT---------A----TGAAAAGGTT..............................................................................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATT---------A----TGAAAAGGTTGGGTC.........................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCG--T..............................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTG....................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCG--TGCCG..........................................................................................................................................................................................................................................................................24200.051000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TAGATCTTTGGCG--TGCCGAA........................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................AG--CATT---------A----TGAAAAGGTTGGGTCTGCA.....................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................TT---------A----TGAAAAGGTTGGGTCTGCAAGG..................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCCG..........................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
......................................................................TTACTATTTTCCCGGTACTTCTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGGGTATTAGATCTTTGGCG--TGC............................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GGTATTAGATCTTTGGCG--TGC............................................................................................................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................G--CATT---------A----TGAAAAGGTTGGGTCTGCA.....................................................................................................................................................................................................................................................................................................25200.051000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AGGTTGGGTCTGCAAGGGT................................................................................................................................................................................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TT---------A----TGAAAAGGTTGGGTCTGCAA....................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCCGAAGATAGC..................................................................................................................................................................................................................................................................29200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................GTTGGGTCTGCAAGGGTATTAGATC........................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................TACTATTTTCCCGGTACTTCTTAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TATTAGATCTTTGGCG--TGCCGAAG.......................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TCTTTGGCG--TGCCGAAGATAGC..................................................................................................................................................................................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GGCG--TGCCGAAGATAGCC.................................................................................................................................................................................................................................................................18200.051000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AGGTTGGGTCTGCAAGGGTATTAG...........................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
.....................................................................TTTACTATTTTCCCGGTACTTCTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGA..........................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TGGGTCTGCAAGGGTATTAGATCT.......................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTGGGTCTGCAAGGGTATTAGATCT.......................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................GGTCTGCAAGGGTATTAGATCTTTGGC..................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
ATGCATATCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTTCTCAGGGTC--------TTCAGAGAAGGCGCGT-TG----------------CGATTT---TCTAACTGAGGCTTCTATAATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCAACTTTCT--------ACAGA---------------------------------------------------------------------------------------------------------------------------------------TAT-----------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTGTATATTTTTTT----------------------------------------------------------------------------------ATCTCTTATCT---TAACGTAGGTTC--------TTCGGAAAAGGCACGT-TG----------------CGACTT---TCTGACTGAGGCCTCAATAATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:05 AM