ID:

dan_1251

 Coordinate:

scaffold_13099:2627194-2627344 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.1 -38.4 -38.2 -38.1

Flybase annnotation

exon [dana_GLEANR_7356:2]; CDS [Dana\GF22839-cds]; intron [Dana\GF22839-in]

No Repeatable elements found

mature
  1. scaffold_616:36-59 +
  2. scaffold_890:840-863 +
  3. scaffold_3699:673-696 +
  4. scaffold_3824:1359-1382 +
  5. scaffold_8648:3329-3352 +
  6. scaffold_8735:1655-1678 +
  7. scaffold_9899:4442-4465 +
  8. scaffold_13076:84422-84445 +
  9. scaffold_13077:375464-375487 +
  10. scaffold_13082:1310443-1310466 +
  11. dan_1251  scaffold_13099:2627199-2627222 +
  12. scaffold_13122:49461-49484 +
  13. scaffold_13152:40614-40637 +
  14. scaffold_13185:12631-12654 +
  15. scaffold_13216:78740-78763 +
  16. scaffold_13228:1086077-1086100 +
  17. scaffold_13250:1447816-1447839 +
  18. scaffold_13417:3988061-3988084 +
  19. scaffold_13417:4474849-4474872 +
  20. scaffold_13417:6900566-6900589 +
  21. scaffold_44:185-208 +
  22. scaffold_608:1258-1281 +
  23. scaffold_861:2988-3011 +
  24. scaffold_9552:9260-9283 +
  25. scaffold_9792:7770-7793 +
  26. scaffold_10423:225-248 +
  27. scaffold_12097:8025-8048 +
  28. scaffold_12911:1708888-1708911 +
  29. scaffold_13082:1226445-1226468 +
  30. scaffold_13082:1553403-1553426 +
  31. scaffold_13137:453362-453385 +
  32. scaffold_13137:462410-462433 +
  33. scaffold_13139:45635-45658 +
  34. scaffold_13230:2288372-2288395 +
  35. scaffold_13250:790067-790090 +
  36. scaffold_13250:1737897-1737920 +
  37. scaffold_13337:21550314-21550337 +
  38. scaffold_13337:22959530-22959553 +
  39. scaffold_13417:3938148-3938171 +
  40. scaffold_13767:149566-149589 +
star
  1. scaffold_4853:867-890 -
  2. scaffold_7964:5363-5386 -
  3. scaffold_8676:876-899 -
  4. scaffold_8942:3196-3219 -
  5. scaffold_9060:3258-3281 -
  6. scaffold_9541:2943-2966 -
  7. scaffold_10077:714-737 -
  8. scaffold_10176:3428-3451 -
  9. scaffold_12902:188768-188791 -
  10. scaffold_12902:191686-191709 -
  11. scaffold_12902:198775-198798 -
  12. scaffold_12911:353816-353839 -
  13. scaffold_13099:531778-531801 -
  14. scaffold_13239:40015-40038 -
  15. scaffold_13239:43742-43765 -
  16. scaffold_13250:332980-333003 -
  17. scaffold_13250:1593754-1593777 -
  18. scaffold_13250:1594471-1594494 -
  19. scaffold_13339:2991444-2991467 -
  20. scaffold_13339:2999583-2999606 -
  21. scaffold_44:258-281 +
  22. scaffold_597:858-881 +
  23. scaffold_861:3061-3084 +
  24. scaffold_8648:3402-3425 +
  25. scaffold_9552:9333-9356 +
  26. scaffold_12273:1278-1301 +
  27. scaffold_12992:10043-10066 +
  28. dan_1251  scaffold_13099:2627272-2627295 +
  29. scaffold_13111:516035-516058 +
  30. scaffold_13111:747354-747377 +
  31. scaffold_13228:819660-819683 +
  32. scaffold_13274:280509-280532 +
  33. scaffold_13339:3560394-3560417 +
  34. scaffold_13339:3782080-3782103 +
  35. scaffold_13417:3938221-3938244 +
  36. scaffold_13417:3944572-3944595 +
  37. scaffold_13417:3988133-3988156 +
  38. scaffold_13417:6900639-6900662 +
  39. scaffold_13469:802237-802260 +
  40. scaffold_13767:149639-149662 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCCAAACCTCTGGCCTACCATAGATCCGGCGGGGTGTAGGCACGCAGGTGTTTGGAGGCGAGTGGCGAACGCGACCGGGGGCGCGTCCTGTAGGGTAGGAAGGCCCTTCGTGCCCTGATCCGGCCGCTAAGCAGCGAGGAGCATATCCTGCCCGGCGTATGCCTGGGAGGTGAGCCACTCGGTCTGTTATCACGGATTAGGTGCCGGCCACGGCGAAAGGGCAAATCCAGCAAGCCAAAGGTTCCGAGTC
*******************************************************...((((...((...(((....((.(((.((.....(((((((.((((...)))).)))))))...))))).)).....)))....))...))..))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V039
embryo
 V106
head
 V105
male body
.......................................................GAGGCGAGTGGCGAACGCGACCGG............................................................................................................................................................................ 24 0 20 2.80 56 56 0 0 0 0 0
................................................................................................................................TAAGCAGCGAGGAGCATATCCTGC................................................................................................... 24 0 20 1.20 24 0 24 0 0 0 0
....................................................................................CTTCCTGTAGGGTAGGAAGGCCC................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
....................................................................................CGTCCTGTAGGGTAGGAAGGCC................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
................TACCATAGATCCGGCGGG......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
....................................................................................CGTCCTGTAGGGTAGGAAGGCCCTTC............................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.................ACCATAGATCCGGCGGGGTGTAG................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
....................................................................................CGTCATGTAGGGTAGGAAT.................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................................................................GGTGAGCCACTCGGTCTGTTATCA.......................................................... 24 0 2 0.50 1 1 0 0 0 0 0
.................................................TGTTTGGAGGCGAGTGGCGAACG................................................................................................................................................................................... 23 0 20 0.45 9 9 0 0 0 0 0
..............................................................GTGGCGAACGCGACCGGGGGCG....................................................................................................................................................................... 22 0 20 0.45 9 9 0 0 0 0 0
.................................................................GCGAACGCGACCGGGGGCGCGTCCTG................................................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0
...............................................................TGGCGAACGCGACCGGGGGCGCGTC................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
...........TGGCCTACCATAGATCCGGGGCG......................................................................................................................................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0
..........................................................................ACCGGGGGCGCGTCCTGT............................................................................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0
...........................................................CGAGTGGCGAACGCGACCGGGGGCGCT..................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0 0
...........................................................CGAGTGGCGAACGCGACCGGGGGCGCC..................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0 0
..............................................................GTGGCGAACGCGACCGGGGGCGCGT.................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................GAGGAGCATATCCTGCCCGGCGTA........................................................................................... 24 0 20 0.30 6 3 3 0 0 0 0
...................................TGTAGGCACGCAGGTGTTTGGAGGCGA............................................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................................TCACGGATTAGGTGCCGGCCACG...................................... 23 0 4 0.25 1 1 0 0 0 0 0
..............................................................GTGGCGAAGGCGACCGGGGGCGCT..................................................................................................................................................................... 24 2 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................................TCACGGATTAGGTGCCGGCCACGGC.................................... 25 0 4 0.25 1 1 0 0 0 0 0
....................................................................................................AAGGCCCTTCGTGCCCTGATCCG................................................................................................................................ 23 0 20 0.20 4 4 0 0 0 0 0
................................................................................................................................................................TGCCTGGGAGGTGAGCCACT....................................................................... 20 0 20 0.20 4 4 0 0 0 0 0
........................................................................................................................................GAGGAGCATATCCTGCCCGGCGTATG......................................................................................... 26 0 20 0.20 4 2 0 0 2 0 0
........................................................................................................................................GAGGAGCATATCCTGCCCGGCGT............................................................................................ 23 0 20 0.20 4 4 0 0 0 0 0
......................................................................................................GGCCCTTCGTGCCCTGATCCGGCC............................................................................................................................. 24 0 20 0.15 3 0 0 0 0 3 0
................................................................................................TAGGAAGGCCCTTCGTGCCCTGATCC................................................................................................................................. 26 0 20 0.15 3 3 0 0 0 0 0
...................................................................................................................CTGATCCGGCCGCTAAGCAGCGA................................................................................................................. 23 0 20 0.15 3 3 0 0 0 0 0
.................................................................................................................................AAGCAGCGAGGAGCATATCCTGCC.................................................................................................. 24 0 20 0.10 2 0 1 0 1 0 0
.....................................................................................................AGGCCCTTCGTGCCCTGATCCGGCCGC........................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
...............................................GGTGTTTGGAGGCGAGTGGCGAACGC.................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
.....................................................TGGAGGCGAGTGGCGAACGCG................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0
..CCAAACCTCTGGCCTACCATA.................................................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................CCCTGATCCGGCCGCTAAGCAGCGA................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................................................................TGCCTGGGAGGTGAGCCACTCG..................................................................... 22 0 20 0.10 2 0 0 0 2 0 0
..........................................ACGCAGGTGTTTGGAGGC............................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
........................................................................................CTGTAGGGTAGGAAGGCCCTTCGTG.......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................GCAGCGAGTAGCATATCCTGCCCGGC.............................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................TGTAGGGTAGGAAGGCCCTTCGTGC......................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.....................................................TGGAGGCGGGTGGCGAACGCGAC............................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
.........................................................GTCGAGTGGCGAACGCGACC.............................................................................................................................................................................. 20 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................GCGAGGAGCATATCCTGCCCGGCGTATGC........................................................................................ 29 0 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................GCTAAGCAGCGAGGAGCATATCCTGC................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................TATGCCTGGTAGGTGAGCCACT....................................................................... 22 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................................CGGCCACGGCGAAAGGGCA........................... 19 0 20 0.05 1 1 0 0 0 0 0
........................................GCACGCGGGTGTTTGGAGGCGGGTGGC........................................................................................................................................................................................ 27 2 20 0.05 1 0 0 0 0 1 0
..........................................................................................GTAGGGTAGGGAGGGCCTT.............................................................................................................................................. 19 2 20 0.05 1 0 0 1 0 0 0
............................................................................................................TCGTGCCCTGATCCGGCCGCT.......................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................GCAGCGAGGAGCATATCCTGACCG................................................................................................ 24 1 20 0.05 1 0 0 0 1 0 0
............................................................................................AGGTTAGGAAGGCCCTTCGTGCC........................................................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0
..............................................AGGTGTTTGGAGGCGAGTGG......................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................GTCCTGTAGGGTAGGAAGGCCC................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................TATCCTGCCCGGCGTATGCCTG..................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................CGGCGTATGCCTGGGAGGTGA............................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................................................TATCCTGCCCGGCGTATGCCTGGGAGG................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................GATCCGGCCGCTAAGCAGC................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................CACGGCGAAAGGGCAAATCCAG.................... 22 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................CCTGTAGGGTAGGAAGGCCCTTCGC........................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................TGTAGGGTAGGAAGGCCCTTCGTGCC........................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................ATGCCTGGGAGGTGAGCCACTC...................................................................... 22 0 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................................TATGCCTGGGAGGTGAGCCAC........................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................TGCCTGGGAGGTGAGCCAC........................................................................ 19 0 20 0.05 1 0 0 0 1 0 0
........................................................AGGCGAGTGGCGAACGCGAC............................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
................................................................................................TAGGAAGGCCCTTCGTGCCCTGATC.................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................TAGGGTAGTGAGGCCCTT.............................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0
....................................................................................................................TGATCCGGCCGCTAAGCAGC................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................TAGGTGCCGGCCACGGCGAAAGG.............................. 23 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................TGCCTGGGGGGTGAGCCACTCGGTCTGT............................................................... 28 1 20 0.05 1 1 0 0 0 0 0
............................................GCAGGTGTTTGGAGGCGAGTGGCG....................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
....................................GTAGGCACGCAGGTGTTTGGAGGC............................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 1
.......................................GGCACGCAGGTGTTTGGAGGCGA............................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................CCTTCGTGCCCTGATCCGGCCGC........................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................GGGAGCATATCCTGCCCGGCGT............................................................................................ 22 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................TAAGCAGCGAGGAGCATATCCTGCCCG................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CGGGTTTGGAGACCGGATGGTATCTAGGCCGCCCCACATCCGTGCGTCCACAAACCTCCGCTCACCGCTTGCGCTGGCCCCCGCGCAGGACATCCCATCCTTCCGGGAAGCACGGGACTAGGCCGGCGATTCGTCGCTCCTCGTATAGGACGGGCCGCATACGGACCCTCCACTCGGTGAGCCAGACAATAGTGCCTAATCCACGGCCGGTGCCGCTTTCCCGTTTAGGTCGTTCGGTTTCCAAGGCTCAG
***************************************************************************************************...((((...((...(((....((.(((.((.....(((((((.((((...)))).)))))))...))))).)).....)))....))...))..))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V055
head
 V105
male body
..............................................................................................................................................................................CGGTGAGCCAGACAATAGTGCCTAAT................................................... 26 0 2 2.50 5 4 1 0 0 0
.....................................................................TGCGCTGGCCCCCGCGCAGGACAT.............................................................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................................................................GGTGAGCCAGACAATAGTGCCTAAT................................................... 25 0 2 2.00 4 2 2 0 0 0
.........................................GTGCGTCCACAAACCTCCGCTCACCGCTT..................................................................................................................................................................................... 29 0 20 1.85 37 37 0 0 0 0
................................................................................................................................................................ACGGACCCTCCACTCGGTGAGCCAGAC................................................................ 27 0 20 1.15 23 23 0 0 0 0
..............GTATGTTATCTAGGCCGCCCCACAT.................................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0
...........................GCCGCCCCACATCCGTGTGTC........................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0
........GAGACCGGATGGTATCTAGGCCGC........................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...........................................................................GGCCCCCGCGCAGGACATCCCATCCTT..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...................................................................CTTGCGCTGGCCCCCGCGCAGGACAT.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
......................................................................GCGCTGGCCCCCGCGCAGGACATCCC........................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..........................................................................TGGCCCCCGCGCAGGACATCCCATCCTT..................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.............................................GTCCACAAACCTCCGCTCACCGCTTG.................................................................................................................................................................................... 26 0 20 0.70 14 14 0 0 0 0
.........................................................................................................................................................................................................................TTCCCGTTTAGGTCGTTCGGTTTCC......... 25 0 3 0.67 2 2 0 0 0 0
...........................................................................................................................................................................................................................CCCGTTTAGGTCGTTCGGTTTCCAAGGCT... 29 0 3 0.67 2 2 0 0 0 0
...................................................................................................................................................................................AGCCAGACAATAGTGCCTAA.................................................... 20 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................CGGTGAGCCAGACAATAGTGCCTAA.................................................... 25 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................CACTCGGTGAGCCAGACAATAGTGCCTAA.................................................... 29 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................TCGGTGAGCCAGACAATAGTGCCTAAT................................................... 27 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................GTGAGCCAGACAATAGTGCCTAAT................................................... 24 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................CTCGGTGAGCCAGACAATAGTGCCTA..................................................... 26 0 2 0.50 1 0 1 0 0 0
.......................................................................................................................................................................................................TCCACGGCCGGTGCCGCTTTCCCGT........................... 25 0 20 0.50 10 10 0 0 0 0
................................................................................................................................................................................GTGAGCCAGACAATAGTGCCTAATCC................................................. 26 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................CCTCCACTCGGTGAGCCAGACAATAGT.......................................................... 27 0 2 0.50 1 1 0 0 0 0
...........ACCGGATGGTATCTGGGCCGCCC......................................................................................................................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................CCTCCACTCGGTGAGCCAGACAATA............................................................ 25 0 2 0.50 1 0 1 0 0 0
................................................................................................ATCCTTCCGGGAAGCACGGGACT.................................................................................................................................... 23 0 20 0.40 8 8 0 0 0 0
.................................................................................................................................................................................................................GTGCCGCTTTCCCGTTTAGGTCG................... 23 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................TGCCGCTTTCCCGTTTAGGTCGTTCG............... 26 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................GTGAGCCTGACAATAGTGCCTAATCCA................................................ 27 1 3 0.33 1 1 0 0 0 0
..............................................................CACCGCTTGCGCTGGCCCCCGCGCAG................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................AGTGCCTAATCCACGGCCGGTGCCGCT.................................. 27 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................GGTGCCGCTTTCCCGTTTAGGTCGTT................. 26 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTCCCGTTTAGGTCGTACGGTTTCC......... 25 1 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................CCACTCGGTGAGCCAGACAATAGGG......................................................... 25 1 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................................................................TTCCCGTTTAGGTCGTTAGGTTTCCA........ 26 1 3 0.33 1 1 0 0 0 0
............................................................CTCACCGCTTGCGCTGGCCCCCGCGC..................................................................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0
..................................................................................................................................................................................................................................AGGTCGTTCGGTTTCCAAGGCTCA. 24 0 3 0.33 1 1 0 0 0 0
.............................................................................CCCCCGCGCAGGACATCCCATCCTA..................................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................CGGTGAGCCAGACATTAGTGCCTAA.................................................... 25 1 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................................................GTTTAGGTCGTTCGGTTTCCAAGGCT... 26 0 3 0.33 1 1 0 0 0 0
...............................................CCACAAACCTCCGCTCACCGCTTG.................................................................................................................................................................................... 24 0 20 0.30 6 6 0 0 0 0
.................................................................................................................................................................................................GCCTAATCCACGGCCGGTGCCGCTTT................................ 26 0 20 0.30 6 6 0 0 0 0
...................................ACATCCGTGCGTCCACAAACCTCCGCT............................................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0
..GGTTTGGAGACCGGATGGTAT.................................................................................................................................................................................................................................... 21 0 20 0.25 5 0 0 5 0 0
.............................CGCCCCACATCCGTGCGTCCACAAACCT.................................................................................................................................................................................................. 28 0 4 0.25 1 0 1 0 0 0
..............................GCCCCACATCCGTGCGTCCACAAACCT.................................................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0
...................................................................................................CTTCCGGGAAGCACGGGACTAGGCC............................................................................................................................... 25 0 20 0.20 4 4 0 0 0 0
.......................................CCGTGCGTCCACAAACCTCCGCTC............................................................................................................................................................................................ 24 0 20 0.20 4 0 4 0 0 0
........................................................................................................................................................................................................CCACGGCCGGTGCCGCTTTCCCGTTTAG....................... 28 0 20 0.20 4 4 0 0 0 0
..............................................................CACCGCTTGCGCTGGCCCCCTCGC..................................................................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0
............................................................................................................................................................................................................GGCCGGTGCCGCTTTCCGGTTTAGGT..................... 26 1 20 0.15 3 3 0 0 0 0
.......................................CCGTGCGTCCACAAACCTCCGCTAAC.......................................................................................................................................................................................... 26 1 20 0.15 3 0 3 0 0 0
......................................................................................................................................................................................................ATCCACGGCCGGTGCCGCTTTCCCGTTT......................... 28 0 20 0.15 3 3 0 0 0 0
............................................................................................................................................................................................................GGCCGGTGCCGCTTTCCCGTTTAG....................... 24 0 20 0.10 2 2 0 0 0 0
................................................CACAAACCTCCGCTCACCGCTTGC................................................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................................................................CTGTCAGCCAGACCATAGTGCCTAAT................................................... 26 3 10 0.10 1 0 0 1 0 0
..................................................................................................................................................................GGACCCTCCACTCGGTGAGCCAG.................................................................. 23 0 20 0.10 2 2 0 0 0 0
...............................................................................................CATCCTTCCGGGACGCACGGGACT.................................................................................................................................... 24 1 20 0.10 2 0 2 0 0 0
..................................................................................................................................................................................................................TGCCGCTTTCCCGTTTAGGTTCTT................. 24 2 20 0.10 2 0 2 0 0 0
..............................................................................................................................................................ATACGGACCCTCCACTCGGTGA....................................................................... 22 0 20 0.10 2 0 2 0 0 0
.........................................................CCGCTCACCGCTTGCGCTGGCCCC.......................................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
..GGTTTGGAGACCGGATGGTATCTA................................................................................................................................................................................................................................. 24 0 20 0.10 2 0 0 0 0 2
..................................CACATTCGTGCGTCCACAAACCTCCGCT............................................................................................................................................................................................. 28 1 15 0.07 1 0 1 0 0 0
........................................................................................................GGGAAGCACGGGACTAGGCCGGCG........................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
...............................................................................................CATCCTTCCGGGAAGGGCGGGACT.................................................................................................................................... 24 2 20 0.05 1 1 0 0 0 0
..........................................................AGCTCACCGCTTGCGCTGGCCC........................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
.........................................GTGCGTCCACAAACCTCCGCTCACCGCGT..................................................................................................................................................................................... 29 1 20 0.05 1 0 1 0 0 0
...................................................................................................................GACTAGGCCGGCGATTCGCCGCTCCTC............................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
..GGTTTGGAGACCGGATCGTATCTA................................................................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................CTCGTATAGGACGGGCCGCATAC......................................................................................... 23 0 20 0.05 1 0 1 0 0 0
..........................................................CGCTCACCGCTTGCGCTGGCCCC.......................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
CGGGTTTGGAGACCGGATGGTA..................................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
.................................................................................................................GGGACTAGGCCGGCGATTCGTCGC.................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
..GGTTTGGAGACCGGATGGTATCT.................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 1
..GGTTTGGAGACCGGATGGTA..................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0
.......................................CAGTGCGTCCACAAACCTCCGCTCACCG........................................................................................................................................................................................ 28 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................CGGCCGGTGCCGCTTTCCCGTTTAGGT..................... 27 0 20 0.05 1 0 1 0 0 0
..GGTTTGGAGACCGGATGGTATCTAC................................................................................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................CCTCCACTCGGTGAGCCAGACAAA............................................................. 24 1 20 0.05 1 0 1 0 0 0
.........................................GTGCGTCCACAAACATCCGCTCA........................................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0
CGGGTTTGGAGACCGGATGGTATCTA................................................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
............................................................................................TCCCATCCTTCCGGGAAGAAC.......................................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0
............................................................................................................................................................................................................GGCCGGTGCCGCTTTCCCG............................ 19 0 20 0.05 1 0 1 0 0 0
...............................................................................................................ACGGGACTAGGCCGGCGATTCGTCG................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................AATCCACGGCCGGTGCCGCTTTCCC............................. 25 0 20 0.05 1 0 1 0 0 0
..............................................................................CCCCGCGCATCACCTCCCA.......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
..........................................................................................................................CCGGCGATTCGTCGCTCCTCCTA.......................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................CGGCGATTCGTCGCTCCGCGTAT......................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................CCTCCACTCGGTGAGCCAGACA............................................................... 22 0 20 0.05 1 0 0 1 0 0
.............................................GTCGACAAACCTCCGCTCACCGCTTGC................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
......................................................CCTCCGCTCACCGCTTGCGCTGGC............................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13099:2627144-2627394 + dan_1251 GCCCAAACCTCTGGCCTACCATAGATCCGGCGGGGTGTAGGCACGCAGGTGTTTGGAGGCGAGTGGCGAACGCGA-CCGGGGGCGCGTCCTGTAGGGTAGGAAGGCCCTTCGTGCCCTGATCCGGCCGCTAAGCAGCGAGGA------GCATATCCTGCCCGGCGTATGCCTGGGAGGTGAGCCACTCGGTCTGTTATCACGGATTAGGTGCCGGCCA-CGGCGAAAGGGCAAATC----CAGCAAGCCAAAGGTTCCGAGTC
droBip1 scf7180000395451:4358-4603 - TCCTG-GTTTCTGGCCCGTCATGGATCCGGCACCGCATGTGCGCGCTGGTGTGTGGCGACTAGTAGCGAACGTAAGCCATGTGGGTGTCCCAAAAGGTAGGAAAGCCCTT-GTGCCCTTGTCCGTCTGCCAGGCA-CAAGGACTGCACACACATCCCGTCCGTCTAACGCCTGGGAGGTGTGCTT---AA-TGGTGACCTCAGAACGGATACTGGTGAGCGACGAGCGGACGAGCGCATACGGC--------GAATCCGAG--
droTak1 scf7180000414579:4504-4504 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCCCAAACCTCTGGCCTACCATAGATCCGGCGGGGTGTAGGCACGCAGGTGTTTGGAGGCGAGTGGCGAACGCGA-CCGGGGGCGCGTCCTGTAGGGTAGGAAGGCCCTTCGTGCCCTGATCCGGCCGCTAAGCAGCGAGGA------GCATATCCTGCCCGGCGTATGCCTGGGAGGTGAGCCACTCGGTCTGTTATCACGGATTAGGTGCCGGCCA-CGGCGAAAGGGCAAATC----CAGCAAGCCAAAGGTTCCGAGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................GAGGCGAGTGGCGAACGCGA-CCGG.......................................................................................................................................................................................24202.80565600000
.................................................................................................................................TAAGCAGCGAGGA------GCATATCCTGC........................................................................................................24201.20240240000
.....................................................................................CGTCCTGTAGGGTAGGAAGGCC............................................................................................................................................................2211.001100000
................TACCATAGATCCGGCGGG.....................................................................................................................................................................................................................................1811.001100000
.....................................................................................CGTCCTGTAGGGTAGGAAGGCCCTTC........................................................................................................................................................2611.001010000
.................ACCATAGATCCGGCGGGGTGTAG...............................................................................................................................................................................................................................2311.001100000
................................................................................................................................................................................GGTGAGCCACTCGGTCTGTTATCA...............................................................2420.501100000
.................................................TGTTTGGAGGCGAGTGGCGAACG...............................................................................................................................................................................................23200.459900000
..............................................................GTGGCGAACGCGA-CCGGGGGCG..................................................................................................................................................................................22200.459900000
.................................................................GCGAACGCGA-CCGGGGGCGCGTCCTG...........................................................................................................................................................................2630.331100000
...............................................................TGGCGAACGCGA-CCGGGGGCGCGTC..............................................................................................................................................................................2530.331010000
..........................................................................A-CCGGGGGCGCGTCCTGT..........................................................................................................................................................................1830.331100000
...........................................................CGAGTGGCGAACGCGA-CCGGGGGCGCT................................................................................................................................................................................2730.331100000
...........................................................CGAGTGGCGAACGCGA-CCGGGGGCGCC................................................................................................................................................................................2730.331100000
..............................................................GTGGCGAACGCGA-CCGGGGGCGCGT...............................................................................................................................................................................2530.331100000
.........................................................................................................................................GAGGA------GCATATCCTGCCCGGCGTA................................................................................................24200.306330000
...................................TGTAGGCACGCAGGTGTTTGGAGGCGA.........................................................................................................................................................................................................2740.251100000
.....................................................................................................................................................................................................TCACGGATTAGGTGCCGGCCA-CG..........................................2340.251100000
.....................................................................................................................................................................................................TCACGGATTAGGTGCCGGCCA-CGGC........................................2540.251100000
.....................................................................................................AAGGCCCTTCGTGCCCTGATCCG...........................................................................................................................................23200.204400000
.......................................................................................................................................................................TGCCTGGGAGGTGAGCCACT............................................................................20200.204400000
.........................................................................................................................................GAGGA------GCATATCCTGCCCGGCGTATG..............................................................................................26200.204202000
.........................................................................................................................................GAGGA------GCATATCCTGCCCGGCGT.................................................................................................23200.204400000
.......................................................................................................GGCCCTTCGTGCCCTGATCCGGCC........................................................................................................................................24200.153000003
.................................................................................................TAGGAAGGCCCTTCGTGCCCTGATCC............................................................................................................................................26200.153300000
....................................................................................................................CTGATCCGGCCGCTAAGCAGCGA............................................................................................................................23200.153300000
..................................................................................................................................AAGCAGCGAGGA------GCATATCCTGCC.......................................................................................................24200.102011000
......................................................................................................AGGCCCTTCGTGCCCTGATCCGGCCGC......................................................................................................................................27200.102200000
...............................................GGTGTTTGGAGGCGAGTGGCGAACGC..............................................................................................................................................................................................26200.102200000
.....................................................TGGAGGCGAGTGGCGAACGCG.............................................................................................................................................................................................21200.102200000
..CCAAACCTCTGGCCTACCATA................................................................................................................................................................................................................................................21200.102200000
..................................................................................................................CCCTGATCCGGCCGCTAAGCAGCGA............................................................................................................................25200.102200000
.......................................................................................................................................................................TGCCTGGGAGGTGAGCCACTCG..........................................................................22200.102002000
..........................................ACGCAGGTGTTTGGAGGC...........................................................................................................................................................................................................18200.051100000
.........................................................................................CTGTAGGGTAGGAAGGCCCTTCGTG.....................................................................................................................................................25200.051100000
..........................................................................................TGTAGGGTAGGAAGGCCCTTCGTGC....................................................................................................................................................25200.051010000
.......................................................................................................................................GCGAGGA------GCATATCCTGCCCGGCGTATGC.............................................................................................29200.051000001
...............................................................................................................................GCTAAGCAGCGAGGA------GCATATCCTGC........................................................................................................26200.051100000
....................................................................................................................................................................................................................CGGCCA-CGGCGAAAGGGCA...............................19200.051100000
.............................................................................................................TCGTGCCCTGATCCGGCCGCT.....................................................................................................................................21200.051100000
..............................................AGGTGTTTGGAGGCGAGTGG.....................................................................................................................................................................................................20200.051100000
......................................................................................GTCCTGTAGGGTAGGAAGGCCC...........................................................................................................................................................22200.051100000
.......................................................................................................................................................TATCCTGCCCGGCGTATGCCTG..........................................................................................22200.051100000
................................................................................................................................................................CGGCGTATGCCTGGGAGGTGA..................................................................................21200.051000100
.......................................................................................................................................................TATCCTGCCCGGCGTATGCCTGGGAGG.....................................................................................27200.051100000
......................................................................................................................GATCCGGCCGCTAAGCAGC..............................................................................................................................19200.051100000
........................................................................................................................................................................................................................CA-CGGCGAAAGGGCAAATC----CAG....................22200.051100000
........................................................................................CCTGTAGGGTAGGAAGGCCCTTCGC......................................................................................................................................................25200.051100000
..........................................................................................TGTAGGGTAGGAAGGCCCTTCGTGCC...................................................................................................................................................26200.051100000
......................................................................................................................................................................ATGCCTGGGAGGTGAGCCACTC...........................................................................22200.051000001
.....................................................................................................................................................................TATGCCTGGGAGGTGAGCCAC.............................................................................21200.051100000
.......................................................................................................................................................................TGCCTGGGAGGTGAGCCAC.............................................................................19200.051001000
........................................................AGGCGAGTGGCGAACGCGA-C..........................................................................................................................................................................................20200.051100000
.................................................................................................TAGGAAGGCCCTTCGTGCCCTGATC.............................................................................................................................................25200.051010000
.....................................................................................................................TGATCCGGCCGCTAAGCAGC..............................................................................................................................20200.051100000
.............................................................................................................................................................................................................TAGGTGCCGGCCA-CGGCGAAAGG..................................23200.051100000
............................................GCAGGTGTTTGGAGGCGAGTGGCG...................................................................................................................................................................................................24200.051010000
....................................GTAGGCACGCAGGTGTTTGGAGGC...........................................................................................................................................................................................................24200.051000010
.......................................GGCACGCAGGTGTTTGGAGGCGA.........................................................................................................................................................................................................23200.051100000
..........................................................................................................CCTTCGTGCCCTGATCCGGCCGC......................................................................................................................................23200.051100000
.................................................................................................................................TAAGCAGCGAGGA------GCATATCCTGCCCG.....................................................................................................27200.051100000
droBip1
TCCTG-GTTTCTGGCCCGTCATGGATCCGGCACCGCATGTGCGCGCTGGTGTGTGGCGACTAGTAGCGAACGTAAGCCATGTGGGTGTCCCAAAAGGTAGGAAAGCCCTT-GTGCCCTTGTCCGTCTGCCAGGCA-CAAGGACTGCACACACATCCCGTCCGTCTAACGCCTGGGAGGTGTGCTT---AA-TGGTGACCTCAGAACGGATACTGGTGAGCGACGAGCGGACGAGCGCATACGGC--------GAATCCGAG--SizeHit CountTotal NormTotal
No Reads
droTak1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 01:06 AM