ID:

dan_1249

 Coordinate:

scaffold_13099:2610509-2610659 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.1 -11.8

Flybase annnotation

exon [dana_GLEANR_7171:2]; CDS [Dana\GF22801-cds]; intron [Dana\GF22801-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_9051:7444-7470 +
  2. scaffold_12588:2868-2894 +
  3. scaffold_12911:1437581-1437607 +
  4. scaffold_12947:148897-148923 +
  5. scaffold_12947:227106-227132 +
  6. scaffold_12984:351543-351569 +
  7. scaffold_13010:447092-447118 +
  8. scaffold_13082:2805067-2805093 +
  9. scaffold_13082:2826356-2826382 +
  10. scaffold_13082:2839083-2839109 +
  11. scaffold_13082:3063700-3063726 +
  12. scaffold_13099:31706-31732 +
  13. scaffold_13178:43315-43341 +
  14. scaffold_13228:291679-291705 +
  15. scaffold_13230:3523445-3523471 +
  16. scaffold_13260:817789-817815 +
  17. scaffold_13260:1201404-1201430 +
  18. scaffold_13272:181665-181691 +
  19. scaffold_13339:1971197-1971223 +
  20. scaffold_13417:5176739-5176765 +
  21. scaffold_8676:2553-2579 -
  22. scaffold_9533:10982-11008 -
  23. scaffold_11129:1521-1547 -
  24. scaffold_12911:130355-130381 -
  25. scaffold_12911:134177-134203 -
  26. scaffold_13034:173163-173189 -
  27. scaffold_13035:9349-9375 -
  28. scaffold_13077:87000-87026 -
  29. scaffold_13077:185453-185479 -
  30. scaffold_13082:2808141-2808167 -
  31. scaffold_13099:521437-521463 -
  32. dan_1249  scaffold_13099:2610536-2610562 -
  33. scaffold_13099:2649050-2649076 -
  34. scaffold_13111:621595-621621 -
  35. scaffold_13230:446213-446239 -
  36. scaffold_13258:438502-438528 -
  37. scaffold_13339:3433325-3433351 -
  38. scaffold_13417:4591675-4591701 -
  39. scaffold_13469:569968-569994 -
  40. scaffold_13767:232889-232915 -
  41. scaffold_12392:95485-95511 +
  42. scaffold_12902:475003-475029 +
  43. scaffold_12966:114171-114197 +
  44. scaffold_13034:807806-807832 +
  45. scaffold_13099:2137-2163 +
  46. scaffold_13099:626026-626052 +
  47. scaffold_13137:1272418-1272444 +
  48. scaffold_13223:6930-6956 +
  49. scaffold_13248:4296263-4296289 +
  50. scaffold_13260:1255750-1255776 +
  51. scaffold_13333:774601-774627 +
  52. scaffold_13339:3558473-3558499 +
  53. scaffold_13354:1332-1358 +
  54. scaffold_13417:3511021-3511047 +
  55. scaffold_13417:6763875-6763901 +
  56. scaffold_13444:1903-1929 +
  57. scaffold_13499:1015101-1015127 +
  58. scaffold_13499:1016798-1016824 +
  59. scaffold_13767:256334-256360 +
  60. scaffold_13770:606968-606994 +
star
  1. scaffold_10217:4443-4468 -
  2. scaffold_12084:3984-4009 -
  3. scaffold_12586:308138-308163 -
  4. scaffold_12919:5001-5026 -
  5. scaffold_13019:45321-45346 -
  6. scaffold_13034:397231-397256 -
  7. scaffold_13045:1095188-1095213 -
  8. scaffold_13077:314242-314267 -
  9. scaffold_13082:3860648-3860673 -
  10. scaffold_13099:1315265-1315290 -
  11. dan_1249  scaffold_13099:2610567-2610592 -
  12. scaffold_13111:599412-599437 -
  13. scaffold_13165:599165-599190 -
  14. scaffold_13228:24432-24457 -
  15. scaffold_13230:446244-446269 -
  16. scaffold_13230:2766745-2766770 -
  17. scaffold_13335:3203909-3203934 -
  18. scaffold_13339:131136-131161 -
  19. scaffold_13417:2471844-2471869 -
  20. scaffold_13770:624768-624793 -
  21. scaffold_12422:74797-74822 +
  22. scaffold_12854:1035-1060 +
  23. scaffold_12916:5686205-5686230 +
  24. scaffold_12916:15728525-15728550 +
  25. scaffold_12941:9876-9901 +
  26. scaffold_13111:42563-42588 +
  27. scaffold_13137:679616-679641 +
  28. scaffold_13137:684548-684573 +
  29. scaffold_13137:1226675-1226700 +
  30. scaffold_13168:39834-39859 +
  31. scaffold_13230:2961529-2961554 +
  32. scaffold_13233:3603-3628 +
  33. scaffold_13248:4169830-4169855 +
  34. scaffold_13280:939965-939990 +
  35. scaffold_13280:1026210-1026235 +
  36. scaffold_13339:1986375-1986400 +
  37. scaffold_13340:5896398-5896423 +
  38. scaffold_13417:5709041-5709066 +
  39. scaffold_13417:6771066-6771091 +
  40. scaffold_13767:651952-651977 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTTAAAGGAAAGGAGGAATCTTTGGAAAACGAAATTCGAGTTTTAAGAAGGTATGTAAGTCAATAAAAATACGTTATATAATTTCATCAAGAAAATCAACTCATAACAAGAAAAGAAAGCTAACTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGTTGAGTCGCAGTCCGCTAGGTGGCGACACGCATCTTATATTATTAGATATATAGCGGATCGTATACTTTGCACACATCCTTCTTTGCAGGTAG
*********************************************************************************************************************.((..(((...(((..(((..(((..........)))...)))..)))..)))..))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
...................................................................................................................................................TACCCTTGCAGTTGAGTCGCAGTCCGC............................................................................. 27 0 20 2.10 42 42 0 0 0
...................................................................................................................................................TACCCTTGCAGTTGAGTCGCAGTCC............................................................................... 25 0 20 0.80 16 0 16 0 0
.....................................................................................................................................................CCCTTGCAGTTGAGTCGCAGTCCGC............................................................................. 25 0 20 0.65 13 13 0 0 0
.......GAAAGGAAGAATCTCTGGAA................................................................................................................................................................................................................................ 20 2 3 0.33 1 1 0 0 0
...................................................................................................................................................................TCGCAGTCCGCTAGGTGGCGAC.................................................................. 22 0 20 0.25 5 5 0 0 0
.........................................................................................................................................................TGCAGTTGAGTCGCAGTCCGC............................................................................. 21 0 20 0.15 3 0 0 3 0
......................................................................................................................................................................................................TATTAGATATATAGCGGATCGTATAC........................... 26 0 9 0.11 1 1 0 0 0
....................................................................................................TCATGTCAAGAAAAGAGAGC................................................................................................................................... 20 3 10 0.10 1 0 1 0 0
.......................................................TAAGTCAATGAAAAAAGGTTA............................................................................................................................................................................... 21 3 12 0.08 1 0 1 0 0
..........................................................................................................................................................................................................................GTATACCTTGCTCATATCC.............. 19 3 16 0.06 1 0 1 0 0
.....................................................................................................................AGCTAACTTCGGGCGGAGCCGAAGTT............................................................................................................ 26 0 20 0.05 1 0 1 0 0
.............................................................................................................................................................GTTGAGTCGCAGTCCGCTA........................................................................... 19 0 20 0.05 1 0 0 0 1
....................................................................................GATCAAGAAAATCAACGCAA................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0
..................................................................................................................................................................GTCGCAGTCCGCTAGGTGGCGAC.................................................................. 23 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TATATACCCTTGCAGTTGAGTC...................................................................................... 22 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

GAATTTCCTTTCCTCCTTAGAAACCTTTTGCTTTAAGCTCAAAATTCTTCCATACATTCAGTTATTTTTATGCAATATATTAAAGTAGTTCTTTTAGTTGAGTATTGTTCTTTTCTTTCGATTGAAGCCCGCCTCGGCTTCAAATATATGGGAACGTCAACTCAGCGTCAGGCGATCCACCGCTGTGCGTAGAATATAATAATCTATATATCGCCTAGCATATGAAACGTGTGTAGGAAGAAACGTCCATC
*****************************************************************************.((..(((...(((..(((..(((..........)))...)))..)))..)))..))********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V106
head
 V039
embryo
 V105
male body
.............................................................................................TTAGTTGAGTATGGTTATTGTCT....................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................GGGAACGTCAACTCAGCGTCAGGCGAT........................................................................... 27 0 20 0.40 8 8 0 0 0 0 0
................................................................................................................................................................................CCACCGCTGTGCGTAGAATAT...................................................... 21 0 20 0.35 7 0 0 3 4 0 0
....................................................................................GTAGTTCTTATAGTTGTGT.................................................................................................................................................... 19 2 9 0.33 3 3 0 0 0 0 0
......................................................................................................TATTGTTCTTTTCTTTCGATTGAAGC........................................................................................................................... 26 0 9 0.33 3 0 2 1 0 0 0
............................................................................................................TCTTTTCTTTCGATTGAAGCCCGCCT..................................................................................................................... 26 0 20 0.30 6 0 6 0 0 0 0
......................................................................................................................................................................GTCAGGCGATCCACCGCTGTG................................................................ 21 0 20 0.25 5 5 0 0 0 0 0
......................................................................................................TATTGTTCTTTTCTTTCGATTGAAGCC.......................................................................................................................... 27 0 9 0.22 2 1 0 0 0 1 0
...................................................................................................................................................................AGCGTCAGGCGATCCACCGCT................................................................... 21 0 20 0.15 3 2 0 0 1 0 0
..........................................................................................................GTTCTTTTCTTTCGATTGAAGCCC......................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0 0
.............................................................................................................CTTTTCTTTCGATTGAAGCCCGCCT..................................................................................................................... 25 0 20 0.15 3 0 3 0 0 0 0
................................................................................................................................................................................CCACCGCTGTGCGTAGAATATAAT................................................... 24 0 20 0.15 3 0 3 0 0 0 0
......................................................................................................TATTGTTCTTTTCTTTCGATTG............................................................................................................................... 22 0 9 0.11 1 0 1 0 0 0 0
............................................................................................................................................CAAATATATGGGAACGTCAACTCAGCGT................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................................................CGTCAACTCAGCGTCAGGCGATCC......................................................................... 24 0 20 0.10 2 2 0 0 0 0 0
...................................................................................................................................................................................CCGCTGTGCGTAGAATATAATAATCT.............................................. 26 0 20 0.10 2 0 2 0 0 0 0
...............................................................................................................................................................................TCCACCGCTGTGCGTAGAAT........................................................ 20 0 20 0.10 2 1 0 0 1 0 0
.......................................................................................................ATTGTTCTTTTCTTTCGATTGAAGCC.......................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
.......................................................................................................ATTGTTCTTTTCTTTCGATTGTAGC........................................................................................................................... 25 1 15 0.07 1 0 1 0 0 0 0
.......................................................................................................ATTGTTCTTTTCTTTCGATTGAAG............................................................................................................................ 24 0 16 0.06 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................CATATGGAACGAGTATAGG.............. 19 3 16 0.06 1 0 0 0 0 0 1
.......................................................................................................ATTGTTCTTTTCTTTCGATTGAA............................................................................................................................. 23 0 16 0.06 1 0 1 0 0 0 0
.......................................................................................................................................................GAACGTCAACTCAGCGTCAGGCGATCCA........................................................................ 28 0 20 0.05 1 0 0 0 0 1 0
....................................................................................................................................................................GCGTCAGGCGATCCACCGCTGT................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................CCTCGGCTTCAAATATATGGGAACGT.............................................................................................. 26 0 20 0.05 1 0 0 0 0 1 0
..........................................................................................................................................................................GGCGATCCACCGCTGTGCGTAGAAT........................................................ 25 0 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................TCAGGCGATCCACCGCTGTG................................................................ 20 0 20 0.05 1 0 0 0 1 0 0
..........................................................................................................................................................................................................TCTATATATCGCCTAGCATAT............................ 21 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................CTATTGTTCTTTTCTTTCGATTGAAGCC.......................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................CTATTGTTCTTTTCTTTCGATTGAAG............................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................CCCGCCTCGGCTTCAAATATATGG.................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................GATCCACCGCTGTGCGTAGAATATAAT................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................ATGGGAACGTCAACTCAGCGT................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................................................GAACGTCAACTCAGCGTCAGGCGA............................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
....................................ACCCAAAATTCTTCCATATA................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................CCACCGCTGTGCGTAGAATATAATAAT................................................ 27 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................CAGGCGATCCACCGCTGTGCGTAGAAT........................................................ 27 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................CGATCCACCGCTGTGCGTAG........................................................... 20 0 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................................................................................................CTATATATCGCCTAGCATA............................. 19 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................AGGCGATCCACCGCTGTGCGT............................................................. 21 0 20 0.05 1 0 0 0 1 0 0
.......................................................................................................ATTTTTCTTTTCTTTCGATTGAAGCCC......................................................................................................................... 27 1 20 0.05 1 0 0 0 0 1 0
............................................................................................................TCTTTTCTTTCGATTGAAGC........................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................CGATCCACCGCTGTGCGTAGA.......................................................... 21 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................TTGTTCTTTTCTTTCGATTGAAGCC.......................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................AGGCGATCCACCGCTGTGCGTA............................................................ 22 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................CTTTTCTTTCGATTGAAGCCC......................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................CTCGGCTTCAAATATATGGGA.................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................ATTATTCTTTTCTTTCGATTGAAGC........................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................GCCCGCCTCGGCTTCAAATAT........................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 1
..................................................................................................................................................TATGGGAACGTCAACTCAGCGT................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................CCACCGCTGTGCGTAGAAT........................................................ 19 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................GCGTCAGGCGATCCACCGCTG.................................................................. 21 0 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................................................GTCAACTCAGCGTCAGGCGATCCACCG..................................................................... 27 0 20 0.05 1 0 0 0 0 0 1
...........................................................................................................TTCTTTTCTTTCGATTGAAGCCCGCCTC.................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................GCGATCCACCGCTGTGCGTA............................................................ 20 0 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................................CTTCAAATATATGGGAACGTCAACTCA....................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13099:2610459-2610709 - dan_1249 CTTAAAGGAAAGGAGGAA---TCTTT--GGAAAACGAAAT-----------------------------------------------------TCGAGTTTTAAGAAGGTATGTAA-GTCAATAA---AAATA-CGTTAT-----------------------------------------------------------------------ATAATTTCATCAAGAAAA-TCAACT--CATAACAAGAAAAGAAAGCTAACTTCGGGC--GGAGCCGAAGTTTATATACCCTTGCAGTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGCTAGG-----TG---------------------------------------------------G---------------------CGACACGCATCTTA------TATTATTAGATA-----TATAGCGGATC-----GTATACTTTGCACACATCCTTCTT-----T-GCAG-GTAG
droBip1 scf7180000393227:1438-1690 - TGTAAATAAGGAATTTAAAAAATTAA--TTAAAATTATAT-----------------------------------------------------ATAAGTAATAATAATGTATATTA-GTGAA--------------------------------------------------ATTAT--GATTTACTTTAAAACAAATAAAAAAATCTCAATTCA-----ATTACTA-AAATTATT--CAGTACAAGAAAGGAAAGATAACTTCGGGC--GGAGCCGAAGTTTATATACCCTTGCAGCTTAAA----CCGG------------------------------------------------------------------------------------------------------A-----------------TATATATCG-AAAACAT------------------CGGATATA----------------------------------GT-TGGCCG-------------------------------------------------------A---TCCTCATGAAATTTTGTAGGTT-GGGT-CAAC
droKik1 scf7180000301674:11515-11783 - ATCGAAAGAAGGAATTGGGT-TCTCA--AGCAAAAAATATTATAGTTTTTAAACGTTTCATTATACCCTTGCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTATAATTTCAGTCAGAAGATTGCAACGCAGTGAAGGAGACGTTTCCGACCCTAT--AAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGT-----CC-------------------------------GTTTCTACGCAAACT----------------------------------------AGTCTTTTAGTTT-----------TAAAGCTATCTGAA--TGAAACTTTGCATATAGTCTTCTATATAC----TC-TCAC
droFic1 scf7180000451884:10678-10941 - CTTTTAAAAAAATAATAG---TTTAT--TGGAAATAAAAA-----------------------------------------------------AAA-----------AATAA----------------------------TATTTTGTGTTAATTATTTTCATAATAATAAGTTCATAAAATTTACC------------------------------------------------A--TGAAACAAGAAAGG-AAGGTAGCTTCGGC----AAGCCGAAGCTTATATACCCTTGCAGTCGAACAAAATACATTAAATACAATACATTCAGTCAGAAGTTTGCAACGCAGTTAAGGAGACACCTCAGACCCCAT--AAAGTATATATATTCTTGATCAGCATCACGAGTAGAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAA
droEle1 scf7180000490995:145281-145562 - CTTAAAAACCT-------------TT--TGCTATT---GTTTTAGTTTTTCAAAGAAATTGTAAACTGTTAAAAAATGTTTTTAGAATTGAAAA---------------------------------------------------------------------------------------------------------------------------------------------T--TAAAACAAGAAAG--AAGCAAACTTCGGC----AAGCCGAAGTTTATATACCCTTGGAGCTATTACAAAAAGT------------------------------------------------------------------------------------------------------A-----------------AATATTCT-TGAATACATTAAAATTATTATTTACTTGCGTATATTTTTA-----------------AAAACATTGAAGCTATGATGACTTGCAGCTTA-------ATTATTCGATAGTTCCT-------------ATGGCAGCTTTAT-GATAT-CTTTTTTCCAATAATATGATAT
droRho1 scf7180000761998:1388-1609 - TCTCGTGAAACAAGAGAT---TGCCTTAAAATAATAAATT-----------------------------------------------------CTGTAAATTAAAATTAAAACAAT-TTTAGCTA---------------------------CTTTCGTTCAT--------------------------------------------------------ATCTATTA-AAGGAATT--TAAAACAAGAAAGG-AAGCATACTTCGGC----AAGCCGAAGTTTATATACCCTTGCAGTTATTACAAATCGA------------------------------------------------------------------------------------------------------C-----------------TACATTTCG-ATTTCAA------------------TGCCTATATTACTA-----------------AAAACAATGAAGC-ATGTCG-------------------------------------------------------ATTTT---------------------------GCGC
droBia1 scf7180000302290:10396-10608 + GAAAAAGGAGTCGTCGTG---T-----------------------------------------------------------------------------TTTGTAAAGCTTCGTGA-AATAG------------------TCCCTTGTGTA----------------------------------CC--A-------------------AAACCA-----AATG--C-AAGTTATA--AGGAACATGAAAGG-AAATTAGCTTCGGC----AAGCCGAAGTTTGTATACCCTTGCAGTTATAAGAAATAAT------------------------------------------------------------------------------------------------------T-----------------AACTTTAG-TAACACCA------------------TGC--------------AAACTTTTTCCCAAAAAA------------------------------------------------------------------------CTTTCCCAAAAGTCTTCTTTCCATT-ACAG-GTAG
droTak1 scf7180000413465:8064-8219 - CCTAAAAACTAGTAAAAA---TGCCC--TTAGAATTGGAA-----------------------------------------------------ATTATTTTCAGAAAAATAGAAAG-GCAAACGA---AAATAACAAAAT-----------------------------------------------------------------------GTTTTGGCAACAT---------CTTTA-CTAACAAGAAAGG-AAGCTAGCTTCGGC----CAGCCGAAGCTTATATACCCTTGCAGATCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droEug1 scf7180000408984:704889-705018 - CTCAAAGGCAAAGAAGAA---TCTCT--AGAGAATGAAAT-----------------------------------------------------ACGTGTTTTGAGAAGGTAAGTCC-AACAAAAATTTTAGT------TT-----------------------------------------------------------------------AAATTTACTACTCATAAA-TTAAGTTA-TAAACAAGAAGAA-ACACTATAGTCGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
dm3 chr4:467812-467877 + CTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGGAA-GTTAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:17798795-17798858 - TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGGAA-GTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_30:197642-197705 + TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGGAA-GTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 4:517853-517918 + TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGAAC-CTTAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4512:822193-822258 - TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTCTTGAGAAGGTAAGAAT-CTAAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_170:11757-11829 - CTGAAGGGAAAGGAAGAA---TCTCT--GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGAGAAGGTAAGCCG-CAGATCAAATAAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_42:425957-426029 - CTGAAGGGAAAGGAAGAA---TCTCT--GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGAGAAGGTAAGCCG-CAGATCAAATAAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004590:3618991-3619173 - CAAAAAGGGTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTTGGTCAGAAGTGTGCAACGCATAGAAGGAAACATCTCCGACCAAAGTAAAAGTATATATATTCTTGATCAGCACGACGAGACGAGT---------------------------TC-------------------------------GAATTAACGCAAACT----------------------------------------CCTCCTAGACCGT-----------AAGAGCT-------ACAGAGCTTTTGCATGTAGGCTTGTATATACT-GCAG-GCGT
droVir3 scaffold_12855:1147803-1147993 + AAACTTGTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCTTCTCAATACAGA-TCATTT--AGCTTCAAGATAAGAGGTTCGAGCACATTTGAGGGTCC--GTTTTTTATACCCTTGCAGCGAATCTATAGAGT------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCGTCTGT-----CT---------------------------------------------------GCGAACA----------------------------AGTCTCTCAGTTT-----------T-------------ATGCAAATTTTGCATACGTGCCTCTTTCTTTT-GCAC-GCAG
droMoj3 scaffold_6498:1149785-1149840 - CTGAAAGGAAAAGAGGAA---TCTTT--GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGCGAAGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14822:824784-824881 + CTGAAGGGAAAAGAGGAA---TCATT--GGAAAATGAAAT-----------------------------------------------------ACGTGTACTTAGAAGGTAAGTTGAATTTATAT---AAATAACAATAT-----------------------------------------------------------------------TTTATTTCAAAATGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CTTAAAGGAAAGGAGGAA---TCTTT--GGAAAACGAAAT-----------------------------------------------------TCGAGTTTTAAGAAGGTATGTAA-GTCAATAA---AAATA-CGTTAT-----------------------------------------------------------------------ATAATTTCATCAAGAAAA-TCAACT--CATAACAAGAAAAGAAAGCTAACTTCGGGC--GGAGCCGAAGTTTATATACCCTTGCAGTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGCTAGG-----TG---------------------------------------------------G---------------------CGACACGCATCTTA------TATTATTAGATA-----TATAGCGGATC-----GTATACTTTGCACACATCCTTCTT-----T-GCAG-GTAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................TACCCTTGCAGTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGC.................................................................................................................................................................................27202.10420420000
..............................................................................................................................................................................................................................................................................................TACCCTTGCAGTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCC...................................................................................................................................................................................25200.80161600000
................................................................................................................................................................................................................................................................................................CCCTTGCAGTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGC.................................................................................................................................................................................25200.65130130000
..............................................................................................................................................................................................................................................................................................................TC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGCTAGG-----TG---------------------------------------------------G---------------------CGAC.........................................................................................22200.255050000
....................................................................................................................................................................................................................................................................................................TGCAGTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGC.................................................................................................................................................................................21200.153000003
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATA-----TATAGCGGATC-----GTATAC..................................2690.111010000
..............................................................................................................................................................................................................................................................AGCTAACTTCGGGC--GGAGCCGAAGTT......................................................................................................................................................................................................................................................................................................................................26200.051100000
........................................................................................................................................................................................................................................................................................................GTTGAGTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGCTA...............................................................................................................................................................................19200.051001000
.............................................................................................................................................................................................................................................................................................................GTC--GC--------------------------------------------------------------------------------------------------------------------AGTCCGCTAGG-----TG---------------------------------------------------G---------------------CGAC.........................................................................................23200.051010000
..........................................................................................................................................................................................................................................................................................TATATACCCTTGCAGTTGAGTC--..............................................................................................................................................................................................................................................................................................................22200.051100000
droBip1
TGTAAATAAGGAATTTAAAAAATTAA--TTAAAATTATAT-----------------------------------------------------ATAAGTAATAATAATGTATATTA-GTGAA--------------------------------------------------ATTAT--GATTTACTTTAAAACAAATAAAAAAATCTCAATTCA-----ATTACTA-AAATTATT--CAGTACAAGAAAGGAAAGATAACTTCGGGC--GGAGCCGAAGTTTATATACCCTTGCAGCTTAAA----CCGG------------------------------------------------------------------------------------------------------A-----------------TATATATCG-AAAACAT------------------CGGATATA----------------------------------GT-TGGCCG-------------------------------------------------------A---TCCTCATGAAATTTTGTAGGTT-GGGT-CAACSizeHit CountTotal NormTotal
No Reads
droKik1
ATCGAAAGAAGGAATTGGGT-TCTCA--AGCAAAAAATATTATAGTTTTTAAACGTTTCATTATACCCTTGCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTATAATTTCAGTCAGAAGATTGCAACGCAGTGAAGGAGACGTTTCCGACCCTAT--AAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGT-----CC-------------------------------GTTTCTACGCAAACT----------------------------------------AGTCTTTTAGTTT-----------TAAAGCTATCTGAA--TGAAACTTTGCATATAGTCTTCTATATAC----TC-TCACSizeHit CountTotal NormTotal
No Reads
droFic1
CTTTTAAAAAAATAATAG---TTTAT--TGGAAATAAAAA-----------------------------------------------------AAA-----------AATAA----------------------------TATTTTGTGTTAATTATTTTCATAATAATAAGTTCATAAAATTTACC------------------------------------------------A--TGAAACAAGAAAGG-AAGGTAGCTTCGGC----AAGCCGAAGCTTATATACCCTTGCAGTCGAACAAAATACATTAAATACAATACATTCAGTCAGAAGTTTGCAACGCAGTTAAGGAGACACCTCAGACCCCAT--AAAGTATATATATTCTTGATCAGCATCACGAGTAGAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAASizeHit CountTotal NormTotal
No Reads
droEle1
CTTAAAAACCT-------------TT--TGCTATT---GTTTTAGTTTTTCAAAGAAATTGTAAACTGTTAAAAAATGTTTTTAGAATTGAAAA---------------------------------------------------------------------------------------------------------------------------------------------T--TAAAACAAGAAAG--AAGCAAACTTCGGC----AAGCCGAAGTTTATATACCCTTGGAGCTATTACAAAAAGT------------------------------------------------------------------------------------------------------A-----------------AATATTCT-TGAATACATTAAAATTATTATTTACTTGCGTATATTTTTA-----------------AAAACATTGAAGCTATGATGACTTGCAGCTTA-------ATTATTCGATAGTTCCT-------------ATGGCAGCTTTAT-GATAT-CTTTTTTCCAATAATATGATATSizeHit CountTotal NormTotal
No Reads
droRho1
TCTCGTGAAACAAGAGAT---TGCCTTAAAATAATAAATT-----------------------------------------------------CTGTAAATTAAAATTAAAACAAT-TTTAGCTA---------------------------CTTTCGTTCAT--------------------------------------------------------ATCTATTA-AAGGAATT--TAAAACAAGAAAGG-AAGCATACTTCGGC----AAGCCGAAGTTTATATACCCTTGCAGTTATTACAAATCGA------------------------------------------------------------------------------------------------------C-----------------TACATTTCG-ATTTCAA------------------TGCCTATATTACTA-----------------AAAACAATGAAGC-ATGTCG-------------------------------------------------------ATTTT---------------------------GCGCSizeHit CountTotal NormTotal
No Reads
droBia1
GAAAAAGGAGTCGTCGTG---T-----------------------------------------------------------------------------TTTGTAAAGCTTCGTGA-AATAG------------------TCCCTTGTGTA----------------------------------CC--A-------------------AAACCA-----AATG--C-AAGTTATA--AGGAACATGAAAGG-AAATTAGCTTCGGC----AAGCCGAAGTTTGTATACCCTTGCAGTTATAAGAAATAAT------------------------------------------------------------------------------------------------------T-----------------AACTTTAG-TAACACCA------------------TGC--------------AAACTTTTTCCCAAAAAA------------------------------------------------------------------------CTTTCCCAAAAGTCTTCTTTCCATT-ACAG-GTAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCTAAAAACTAGTAAAAA---TGCCC--TTAGAATTGGAA-----------------------------------------------------ATTATTTTCAGAAAAATAGAAAG-GCAAACGA---AAATAACAAAAT-----------------------------------------------------------------------GTTTTGGCAACAT---------CTTTA-CTAACAAGAAAGG-AAGCTAGCTTCGGC----CAGCCGAAGCTTATATACCCTTGCAGATCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEug1
CTCAAAGGCAAAGAAGAA---TCTCT--AGAGAATGAAAT-----------------------------------------------------ACGTGTTTTGAGAAGGTAAGTCC-AACAAAAATTTTAGT------TT-----------------------------------------------------------------------AAATTTACTACTCATAAA-TTAAGTTA-TAAACAAGAAGAA-ACACTATAGTCGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
dm3
CTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGGAA-GTTAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000010100000000100100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
.......................TCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000200000
........AAAGGAAGAA---TCTCT--GGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.......................TCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AGGGAAAGGAAGAA---TCTCT--GGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTTGAGAAGGTAAGGAA-GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.....................................................................................................TGAGAAGGTAAGGAA-GTTAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
........AAAGGAAGAA---TCTCT--GGAGAATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAAAGGGAAAGGAAGAA---TCTCT--GGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GGAAAGGAAGAA---TCTCT--GGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGGAAAGGAAGAA---TCTCT--GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................CTCT--GGAGAATGAAAT-----------------------------------------------------TCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000
..........AGGAAGAA---TCTCT--GGAGAATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................A---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............AGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGAATGAAAT-----------------------------------------------------TCGCGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGGAAAGGAAGAA---TCTCT--GGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAAAGGGAAAGGAAGAA---TCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAGGAAGAA---TCTCT--GGAGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGGAAAGGAAGAA---TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAGGAAGAA---TCTCT--GGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTCT--GGAGAATGAAAT-----------------------------------------------------TCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
CTAAAGGGAAAGGAAGAA---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATGAAAT-----------------------------------------------------TCGCGTTTTGAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGGAAAGGAAGAA---TCTCT--GGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GGAAGAA---TCTCT--GGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................T--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAAAGGGAAAGGAAGAA---TCTCT--GGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................T--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAAAGGGAAAGGAAGAA---TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTTGAGAAGGTAAGGAA-GTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
CTAAAGGGAAAGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................A---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................A---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........AAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTAAAGGGAAAGGAAGAA---TCTCT--GGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGAA---TCTCT--GGAGAATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AT-----------------------------------------------------TCGCGTTTTGAGAAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........AGGAAGAA---TCTCT--GGAGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAATGAAAT-----------------------------------------------------TCGCGTTTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAAGGGAAAGGAAGAA---TCTCT--GGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...AAGGGAAAGGAAGAA---TCTCT--GGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAAGGAAGAA---TCTCT--GGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
........................CT--GGAGAATGAAAT-----------------------------------------------------TCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GGGAAAGGAAGAA---TCTCT--GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAGGAAGAA---TCTCT--GGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................TCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................A---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
.............................................................................................TCGCGTTTTGAGAAGGTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGGAA-GTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........AAAGGAAGAA---TCTCT--GGAGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000000000000000
................................AATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..........AGGAAGAA---TCTCT--GGAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.......................TCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
droSec2
TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGGAA-GTTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................GTTTTGAGAAGGTAAGGAA-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
droYak3
TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTAAGAAC-CTTAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................TCGCGTTTTGAGAAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18212.5025000000000025
.........................T--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTTGAGAAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.00100000000001
.....................TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
TTAAAGGGAAAGGAAGAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------TCGCGTCTTGAGAAGGTAAGAAT-CTAAATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............GAA---TCTCT--GGAGAATGAAAT-----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.TAAAGGGAAAGGAAGAA---TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.................A---TCTCT--GGAGAATGAAAT-----------------------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
dp5
CTGAAGGGAAAGGAAGAA---TCTCT--GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGAGAAGGTAAGCCG-CAGATCAAATAAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................TGTTCTGAGAAGGTAAGCCG-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......GGAAAGGAAGAA---TCTCT--GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
CTGAAGGGAAAGGAAGAA---TCTCT--GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGAGAAGGTAAGCCG-CAGATCAAATAAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............AAGAA---TCTCT--GGAAAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................................GAAAT-----------------------------------------------------ACGTGTTCTGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
droWil2
CAAAAAGGGTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTTGGTCAGAAGTGTGCAACGCATAGAAGGAAACATCTCCGACCAAAGTAAAAGTATATATATTCTTGATCAGCACGACGAGACGAGT---------------------------TC-------------------------------GAATTAACGCAAACT----------------------------------------CCTCCTAGACCGT-----------AAGAGCT-------ACAGAGCTTTTGCATGTAGGCTTGTATATACT-GCAG-GCGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------------------GAATTAACGCAAACT----------------------------------------CCTCCTAGAC......................................................................2711.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------ACAGAGCTTTTGCATGTAGGC.....................2290.11100010
.......................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCACGACGAGACGAGT---------------------------TC-------------------------------GAAT...................................................................................................................................28190.11202000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCATGTAGGCTTG..................21100.10101000
...........................................................................................................................................................................................................................................................................................................................................CAGAAGTGTGCAACGCATAGAAGG.............................................................................................................................................................................................................................................................24200.10202000
......................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCACGACGAGACGAGT---------------------------TC-------------------------------G......................................................................................................................................26200.05101000
............A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTTGGTCAGAAGTGTGCA.........................................................................................................................................................................................................................................................................24200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACCGT-----------AAGAGCT-------ACAGAG....................................21200.05101000
............................................................................................................................................................................................................................................................................................................................................AGAAGTGTGCAACGCATA..................................................................................................................................................................................................................................................................18200.05100010
droVir3
AAACTTGTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCTTCTCAATACAGA-TCATTT--AGCTTCAAGATAAGAGGTTCGAGCACATTTGAGGGTCC--GTTTTTTATACCCTTGCAGCGAATCTATAGAGT------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCGTCTGT-----CT---------------------------------------------------GCGAACA----------------------------AGTCTCTCAGTTT-----------T-------------ATGCAAATTTTGCATACGTGCCTCTTTCTTTT-GCAC-GCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGT-----CT---------------------------------------------------G..................................................................................................................20200.357000000000000000000007000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCGTC................................................................................................................................................................................20200.102000001000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCG..................................................................................................................................................................................18200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGT------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCGTCTGT-----C.......................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCCGTCTGT-----CT---------------------------------------------------G..................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCGTCT...............................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGATATAGCCATGTCCGTCTGT-----CT---------------------------------------------------...................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCATGTCCGTCTGT-----CT---------------------------------------------------G..................................................................................................................21200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------CGATATAGCCATGTCCGTCTGT-----CT---------------------------------------------------G..................................................................................................................26200.051000000000000000000000000000000000100000000000000000000000000000
droMoj3
CTGAAAGGAAAAGAGGAA---TCTTT--GGAAAATGAAAT-----------------------------------------------------ACGTGTTCTGCGAAGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTGAAGGGAAAAGAGGAA---TCATT--GGAAAATGAAAT-----------------------------------------------------ACGTGTACTTAGAAGGTAAGTTGAATTTATAT---AAATAACAATAT-----------------------------------------------------------------------TTTATTTCAAAATGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:06 AM