ID:

dan_1247

 Coordinate:

scaffold_13099:2058993-2059143 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.8 -24.5 -24.4

Flybase annnotation

CDS [Dana\GF22834-cds]; exon [dana_GLEANR_7325:2]; intron [Dana\GF22834-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_8052:1411-1438 +
  2. scaffold_12392:73129-73156 +
  3. scaffold_12911:928066-928093 +
  4. scaffold_12911:2475759-2475786 +
  5. scaffold_12966:102564-102591 +
  6. scaffold_13045:729964-729991 +
  7. scaffold_13082:546927-546954 +
  8. dan_1247  scaffold_13099:2059077-2059104 +
  9. scaffold_13110:1009-1036 +
  10. scaffold_13137:1361248-1361275 +
  11. scaffold_13250:767243-767270 +
  12. scaffold_13250:906747-906774 +
  13. scaffold_13250:3104915-3104942 +
  14. scaffold_13274:282859-282886 +
  15. scaffold_13337:21650418-21650445 +
  16. scaffold_13337:22438698-22438725 +
  17. scaffold_13339:3334529-3334556 +
  18. scaffold_13340:17019752-17019779 +
  19. scaffold_13417:5261549-5261576 +
  20. scaffold_13469:657048-657075 +
  21. scaffold_298:500-527 -
  22. scaffold_12911:1345154-1345181 -
  23. scaffold_12916:3511467-3511494 -
  24. scaffold_12947:563704-563731 -
  25. scaffold_13010:347623-347650 -
  26. scaffold_13079:455555-455582 -
  27. scaffold_13137:1226664-1226691 -
  28. scaffold_13239:171166-171193 -
  29. scaffold_13248:22186-22213 -
  30. scaffold_13250:3030844-3030871 -
  31. scaffold_13266:1680274-1680301 -
  32. scaffold_13333:301824-301851 -
  33. scaffold_13337:48253-48280 -
  34. scaffold_13339:156256-156283 -
  35. scaffold_13339:3298577-3298604 -
  36. scaffold_13340:13110295-13110322 -
  37. scaffold_13340:13716144-13716171 -
  38. scaffold_13417:2277606-2277633 -
  39. scaffold_13417:3029456-3029483 -
  40. scaffold_13767:651941-651968 -
star
  1. scaffold_12911:1943249-1943277 +
  2. scaffold_12948:211041-211069 +
  3. scaffold_13010:400793-400821 +
  4. scaffold_13082:1750753-1750781 +
  5. scaffold_13089:299629-299657 +
  6. scaffold_13089:571654-571682 +
  7. dan_1247  scaffold_13099:2059006-2059034 +
  8. scaffold_13250:1192619-1192647 +
  9. scaffold_13258:137144-137172 +
  10. scaffold_13260:2111804-2111832 +
  11. scaffold_13266:19719466-19719494 +
  12. scaffold_13337:22306861-22306889 +
  13. scaffold_13339:358499-358527 +
  14. scaffold_13339:367225-367253 +
  15. scaffold_13339:876956-876984 +
  16. scaffold_13339:877865-877893 +
  17. scaffold_13339:2278655-2278683 +
  18. scaffold_13767:883168-883196 +
  19. scaffold_13767:1162811-1162839 +
  20. scaffold_13767:1234583-1234611 +
  21. scaffold_125:546-574 +
  22. scaffold_243:834-862 +
  23. scaffold_7794:331-359 +
  24. scaffold_10478:657-685 +
  25. scaffold_10641:4693-4721 +
  26. scaffold_11307:1177-1205 +
  27. scaffold_12073:404-432 +
  28. scaffold_12911:37528-37556 +
  29. scaffold_12947:813152-813180 +
  30. scaffold_13040:5343-5371 +
  31. scaffold_13045:502703-502731 +
  32. scaffold_13154:908-936 +
  33. scaffold_13230:1330328-1330356 +
  34. scaffold_13250:738712-738740 +
  35. scaffold_13260:39582-39610 +
  36. scaffold_13266:19412820-19412848 +
  37. scaffold_13335:3306842-3306870 +
  38. scaffold_13417:3455552-3455580 +
  39. scaffold_13417:5107904-5107932 +
  40. scaffold_13767:1378665-1378693 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAAAATAATTCGATATGCCAAATTTCATAAGGATCGGCCAACTGTATACGATCCGCTATATATCTAATAATATAAGATGCGTGGCGCCACCTGGCGAACTGCGACTCAAATGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTCTTGTTTATAGTTTTTTTAAAAATTTTTTTTTCCTTTTTTTAGTGATTTAGCAGAATATGAAAAACTAGCTAGTAAATACGAAACTGATGTGA
***************************************************************.............((..(((((((((....))))..)))))..))......(((((......((((((((......))))))))......)))))....***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M044
female body
 V055
head
 M058
embryo
 V105
male body
.............................................................................ATGCGTGGCGCCGCCTGGCGA......................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................TCCGCCCGAAGTTAGCTTTCCTTTCTTG......................................................................................... 28 0 20 0.50 10 0 10 0 0 0
................................................................................................................................................................................................................................TAGCTAATAGATACGGAACTG...... 21 3 3 0.33 1 0 0 1 0 0
............................................................................................................................................CGAAGTTAGCTTTCCTTTCTTGTTT...................................................................................... 25 0 20 0.20 4 0 4 0 0 0
........................................AACTGTATACGATCCGCTATA.............................................................................................................................................................................................. 21 0 6 0.17 1 1 0 0 0 0
...............................................................TCTAATAATATAAGATGCGTGGCGCCACC............................................................................................................................................................... 29 0 20 0.15 3 0 3 0 0 0
............................................................................GAGGCGTGGCGCCACCTGGC........................................................................................................................................................... 20 1 8 0.13 1 1 0 0 0 0
......................................................................ATATAAGATGCGTGGCGCCACCTGGCGT......................................................................................................................................................... 28 1 9 0.11 1 0 0 0 1 0
............................................................................................................AAATGCAAGGGTATATAAACC.......................................................................................................................... 21 1 16 0.06 1 0 0 0 1 0
....................AAATTTCATAAGGATCGGCCAA................................................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
...............ATGCCAAATTTCATAAGGATCGG..................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 1
........ATTCGATATGCCAAATTTCATAAGGATC....................................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0
...............ATGCCAAATTTCATAAGGAT........................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 1 0
..............................................ATACGATCCGCTATATATC.......................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0
................................................................CTAATAATATAAGATGCGTGGCGC................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
..............................................................ATCTAATAATATAAGATGCGTGG...................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 1
....................................................................TAATATAAGATGCGTGGCGC................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
................................................................CTAATAATATAAGATGCGTG....................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CGTTTTATTAAGCTATACGGTTTAAAGTATTCCTAGCCGGTTGACATATGCTAGGCGATATATAGATTATTATATTCTACGCACCGCGGTGGACCGCTTGACGCTGAGTTTACGTTCCCATATATTTGAAGCCGAGGCGGGCTTCAATCGAAAGGAAAGAACAAATATCAAAAAAATTTTTAAAAAAAAAGGAAAAAAATCACTAAATCGTCTTATACTTTTTGATCGATCATTTATGCTTTGACTACACT
*****************************************************************************************.............((..(((((((((....))))..)))))..))......(((((......((((((((......))))))))......)))))....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body
..............................................................................................CGCTGGCCGCTGAGTTTTC.......................................................................................................................................... 19 3 20 2.15 43 42 0 0 1
........................................................................................................................................................................CAAAAAAATTTTGAAAAAAAAA............................................................. 22 1 3 0.33 1 0 1 0 0
..............................................................................................................................................................................................AAAAAAAAAACACTAAATCGTCTTA.................................... 25 3 4 0.25 1 0 1 0 0
......................................................................................................................................................................................CCAAAAAAGGAAAAAAATCAC................................................ 21 2 5 0.20 1 0 1 0 0
....................................CCGGTTGACATATGCTAGGCGATA............................................................................................................................................................................................... 24 0 5 0.20 1 0 0 1 0
............................................CATATGCTAGGCGATATATAGATTAT..................................................................................................................................................................................... 26 0 9 0.11 1 0 1 0 0
..............................................................................................................TACGTTCCCATATATTTGAAGCCGAGGC................................................................................................................. 28 0 11 0.09 1 1 0 0 0
..............................................................................................................................................................GAACAAATGTCAAAAAAA........................................................................... 18 1 11 0.09 1 0 1 0 0
...............................CCTAGCCGGTTGACATATGCT....................................................................................................................................................................................................... 21 0 12 0.08 1 0 1 0 0
......................................................................................................GCTGAGTTTACGTTCCCGTATA............................................................................................................................... 22 1 14 0.07 1 0 0 0 1
......................TAAAGTATTCTTAGCCGGTTGACATAT.......................................................................................................................................................................................................... 27 1 15 0.07 1 0 1 0 0
.............................TTCCTAGCCGGTTGACATATG......................................................................................................................................................................................................... 21 0 15 0.07 1 1 0 0 0
................................CTAGCCGGTTGACATATG......................................................................................................................................................................................................... 18 0 17 0.06 1 0 1 0 0
..........................................................................................................................................GGGCTTCAATCGAAAGGAAAGAACAAAT..................................................................................... 28 0 20 0.05 1 1 0 0 0
...............................CCTAGCCGGTTGACATATTC........................................................................................................................................................................................................ 20 1 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13099:2058943-2059193 + dan_1247 GCAAAATAATTC---GAT--------ATGCCA-----AATTTCATAAGGATCGGCCAACTGTAT-------------------------------------------------------------------------------ACGATCCGCTATATATCTAATAATA--TAAGAT-----------------------------------------------------------------------------GC-GTGGCGC---------------------------------------------------------------------------------------------------------CACCTGGCGAACTGCGA-CTC------------------------A----AATGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTA-GCTTTCCTTTCTTGTTTA---TAG-TTTTTTTAAAAATTTTTTT---T-T-C---------------CTT--------------------------TT-----------TTTAGTGATTTAGCAGAATATG---------AAAA-----------ACTAGCTAGTAAATACGAAACT--GATGTGA
droBip1 scf7180000396556:2841-3028 + GCAAAATAATAC---GAC--------ATGCCA-----AATTTCATAAGGATCGGCCGACTATATCCTATAGCTGCCATATAACTGAACGAT-CGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAC-------------C-----CA-----------------------------------------------------------------------------------------------AC-TTT------------------------A----GCTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTA-GCTTTCCTTTCTTGTTTTT-TTAT-TTTT---------------------T---------TTTTTCCGG-----------------------------TC-------------------TTTCAGAATTTG---------GAAA------------------------------------------
droKik1 scf7180000302697:1043597-1043810 + ACATAATAAGT--A---TAGGTAACA-------------TGTAATGAAACTCTGTTTTGTGAGT-------------------------------------------------------------------------------GTTTTCAGCATTTAAATCTATAATATAAACCTC-----------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------AA-A----C-----------------------CAATCTGCAAGGGTATACAAACTTCGGCGT--GCCGAAGTTA-GCTT-CCTTTCTTGTTCA---TAG-TATTTTTAGTAATATTTTA---A-G-G---------------TTA--------------------------AT-----------CTTGGTAATATTACAAATAAAA---------ATAT-----------ACTTATTAATTAGTG-------------CG-
droFic1 scf7180000453850:125616-125846 - GTCTTGAGT-------------------TTCAAATTAAATTTCATCAAAATCGCACAACTATATCATATAGCTCTCGTA----TGAACAATATGGAACATTAATATGTATTTTTCTC---------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT----AAT------------------------G----ACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTA-TCTT-CTTTTCTTGTTTTC-ATAA-TCTTTTTAACAAGATTGTC---T----------------------------AAAATA-------------T--TTTAAATTAAAT---------TTACTGACTATG---------GAAA-----------CCT---TACTAAATG-------------CG-
droEle1 scf7180000491104:114819-115089 - ATATAAGT---C---GAC--------------------------------------TAACAAATCATATAGCCGCCATA----GGAACGAT-CGAAAAAATCAT-------------CGGA-------------------------------------------AAAT--TTAAAATCGTCA---TTCTTAACT------------------------TAC--ATGTGGTCGTTTTATAGAATATAT-TTATTGT-----------------------------------------------------------------------------------------------------------------------------------AAT------------------------A----GCTCCAAGAGTGTATATCCTTCGGCTT--GCCGAAGTTT-GCTT-CCTTTCTTGTTAT----GG-TCTTTCTGACAAATATTTATATTT-TC----TATT----T---------------------------------------------CAGGTTTTCTATGAGAA-AAGAAAAAAATTCTCAATACTAATTGTCCAACGTACAA-------------GGTATGT
droRho1 scf7180000769234:813-1038 + GCCAATTAATCC---GAC--------CTTCCA-----AGTTTCATAGGGATCGGCCGACTTAAGAATGCA----TCATA----TGAATAATTT----------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATATAATTTAC-A---------------------------------------------------------------------------------------------------------------------------------GA-A----------------------------TATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTA-GCTTTCCATTCTTTTTTT--GTGG-TTTGCTTAGCTACTTTGAT---TT-TG----CA-------TTTT-----------------------------TCTTTGTTTGAT---------TCGCACAGCA------------ATC-----------GTGAGTCAGTAAGTA-------------AGA
droBia1 scf7180000301304:6903-7127 + ATTCAATT---TTT-GAC--------ATATT-------ATCTTA-----------------------------------------------------------------------------------------------------------------------TAATATTGGGAA----TATACATTTTTATATTTTTAATAAAATTATTCAATTTAATAAAA---T--------TATTGATTATTTTT-----------------------------------------------------------------------------------------------------------------------------------------TAT------------------------A----GCTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTA-ACTT-CCTTTCTTGTTTTT-TTTTTAAA---------T------------T---------TTAATTGATATTCTTAATGGTA-------------T--TCTAAATCGAA---------------------------------------------------ATAACAAGTAAGAAAAGTTTATATGT
droTak1 scf7180000415572:41869-42158 - AAATATTT---CCG---A--------ATTTCAATTTTAATTTAATTAAAATCGGACGACTATATCATATAGCTGCCATA----GGAACGAT-CGGAAAATTAAT-------------GAGA-------------------------------------------AATA--TTAGAAAATTGA-------------------------------------AC--ATTTTTG------------------------------------------------------------------------------------------------------------------------------------------CGATTTGTTTATTAATA-G-----------GAA--------------TGATCTGCAAGGGTATATAAGCTTCGGCTG--GCCGAAGCTA-GCTT-CCTTTCTTGTTTTT-TTGT-TTTT--TAAATATATTAAA---T------------------GGCACA----------ATGTTAACATATT-TA-----------TTCAGTATCATAGAAAAATATT---------ACAA-----------AATTGCAGTATAATATCATATT--GGTTTT-
droEug1 scf7180000406964:106175-106266 + TTTTTCGT---GCA---TAATTAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTATA---T-A-T---------------ATT--------------------------CT-----------ATTAGGGATTTAAAAGAGTATG---------AAAA-----------GTTTGCAGCCAAATATGAAACT--GATGTCA
dm3 chr4:617885-617980 + CCGCCAAA-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTT-----------------------ATA--------------------------AT-----------TTTATTAGTTCTGTAAATTTTG---------ATAG-----------ATTTGCCAACAAA------------------
droSim2 2l:20939246-20939348 - GAAGTTCT---TTC---T--------GTATT--------------------------------------------------------------------------------TATCTT---------------------------------------------GAAATATT----------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------CT--GCTTAAAATA------------------------T-TTT-------------T--------T---------TTTTTTTTC-----------------------------TC---------TTTAAAAGTTTAACAAAATAAA---------GCAG-----------TGAAGTTAGTAAAAA---------------C
droSec2 scaffold_52:114401-114468 + TTATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--------------------------AT-----------TTTAGAGACTTAACAGAATATG---------AAAA-----------GTTGGCTAGCAAGTATGAAACC--GACGTGA
droYak3 3L:21555303-21555458 + TATATATAT---------------AT-------------TTTAATGAGATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCCGTTTCGATTGTGACGCAAGTTGAAAAATATATCTGCTTATCTAATTTATGTTCTCCCCATTATTTACTGAATAAATAAGAACAA----------------------------------------------------------------------------------------------------------------------------TTTTTTT---T-T-G---------------TCT--------------------------AG-----------TTCAATGGTTTAATGGTATTTG---------AAAA-----------------------------------------A
droEre2 scaffold_4770:1570597-1570748 + CTTGATTAA---------------AA-----------------------------------TATTATGAAACTGCAATG----GG-----------------------------------------------------------------------CTTCCGA---TA--------------------------------------------------TAC--AT-TAGTTG---------------------------TTTTTCTA--------------------------------------------------------------------------------------------------------------CACATATATTAT------------------------T----ACTGCAAGGGTATGTGAGTTTCGGCTT--GCCGAAGCTA-GCTT-CCCTTCTTATTTTG-GTTA-TACTCTTAA-----------------------------T---ATTA------------------------C--CT-----------TT----------------------------------------------------------------------TC-
dp5 3:6474352-6474487 + GGATCAGC-----------------------------------------------CTATTATATGATATAGTAA-----------------------------------------------------------CGAACTATAGAGGATGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTGGATGATGGCAATAGGCTTATTGGTC-G-----------TCA----------------AAATTTAAGGGTATATAAAATTCGGCTTTGGT-TTTTATA-GCGT-GTTCGT--------T-------------------GTT---------------------------------------------------------------------------------------------------------------------------------------------CT-
droPer2 scaffold_8683:972-1076 + TCTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTT-GGGT-TTTTTCTATCGATTGTGTGTG-T-G-TGTTGCATT----T--------------------------------------------GCAATTCATTTTACAAATGGCA---------AACA-----------A--ATTTAGTAAACAACAAACC--AATCCAA
droWil2 scf2_1100000004887:269165-269382 - ATAAAACC---CCA---G--------ATCCCAA----AATTTGAATGTGATCGGATAAATATAACACA-AGCTACAGTC-----------------------------------------------------------------------------AA------------------------------------------------------------TATAA---TAATCG---------------------------GCTCTGCT-------------CCCAGCTCTGCCGG--------------------------------------------------------------------------------------------AAG------------------------C----GCTGCAAGGGTATATAAACTTCGGCATA-GCCGATGTTA-GCTT-CTTTGA--------TATTT-TTTGTTCAT-----------------------------T---TTTA------------------------T--T----------TTTATAAAATAAACAAAAAATA---------AACA-----------AA----AAGAAAAAACGAAA-C--AAAATAA
droVir3 scaffold_9558:4076-4298 + TCAAGATA---TCTTG-C-----------CCA-----AATTTGGTATTTATTGTG------TCC-------------------------------------------------------------------------------ACTATGCTC-------------------------------------------------------------------------------CTCATATAAG-TA---------------------TATATATATATGATCTTGGCCCT-----------------------------------------------------------------------------------------------AT-TCTAACACATCTGCAAAGCTGTAAGGCAAATGTGTACAAGGGTATTAAATCTTCGGCGT--GTCGAAGATATGCCT-ACTTTCTCGTCCCT-TTTT-TTTGCTAAATTATCAT----------------------T---TTTA------------------------T--C-----------TTATAACTTGAGCAAAAT---------------------------------------------------GATGA-A
droMoj3 scaffold_6680:1642564-1642708 + GTCTATCA---TCCAG-T----------GT------------------------------------------------------A-----------------------------------------------------------------------TCTATGA---TATATATCAT-----------------------------------------------------------------------------ATAGTAGCTC---------------------------------------------------------------------------------------------------------CACTTGCTACACACAAA-TAT------------------------A----TGCGCAAGGGTATATAGATTTCGACTC--TTCTAGGAAAATGGT-GTTTTCTTATTCCTTTTCG-CTCGCTCAGTTATTATT---------------------------------------------------------------------------------------------------------------------------------------------TT-
droGri2 scaffold_14830:928179-928368 + GTATAACTATTC---TTT-----------------------------------------------------------------------------------------------------AAACATTTGAATAAAAAACTAT----------------------TAGCATTGGAAA----GCTATTGTTCTAT-TTCTCAGCAGGAACAATCAGATGAA-------------------------------------------AATAGT-------------T-----GG-----------------------------------------------------------------------------------------------AT-T----C-----------------------CGTTTTTCAAGGGTATATAATCTTCGGCGT--TCCAAAGCTG-GCTT-TCATTCTTAGTTAT-TTTTTTTA---------T------------T---------TTTTTTTGC-----------------------------TT---------TCTGGTGGTTT------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCAAAATAATTC---GAT--------ATGCCA-----AATTTCATAAGGATCGGCCAACTGTAT-------------------------------------------------------------------------------ACGATCCGCTATATATCTAATAATA--TAAGAT-----------------------------------------------------------------------------GC-GTGGCGC---------------------------------------------------------------------------------------------------------CACCTGGCGAACTGCGA-CTC------------------------A----AATGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTA-GCTTTCCTTTCTTGTTTA---TAG-TTTTTTTAAAAATTTTTTT---T-T-C---------------CTT--------------------------TT-----------TTTAGTGATTTAGCAGAATATG---------AAAA-----------ACTAGCTAGTAAATACGAAACT--GATGTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCCGAAGTTA-GCTTTCCTTTCTTG............................................................................................................................................................................28200.50101000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTA-GCTTTCCTTTCTTGTTT.........................................................................................................................................................................25200.204400000
........................................................AACTGTAT-------------------------------------------------------------------------------ACGATCCGCTATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.171000001
..............................................................................................................................................................TCTAATAATA--TAAGAT-----------------------------------------------------------------------------GC-GTGGCGC---------------------------------------------------------------------------------------------------------CACC................................................................................................................................................................................................................................................................................29200.153300000
.....................................................................................................................................................................ATA--TAAGAT-----------------------------------------------------------------------------GC-GTGGCGC---------------------------------------------------------------------------------------------------------CACCTGGCGT..........................................................................................................................................................................................................................................................................2890.111010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................A----AATGCAAGGGTATATAAACC..............................................................................................................................................................................................................21160.061010000
...............................A-----AATTTCATAAGGATCGGCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..........................ATGCCA-----AATTTCATAAGGATCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
........ATTC---GAT--------ATGCCA-----AATTTCATAAGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
..........................ATGCCA-----AATTTCATAAGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..............................................................AT-------------------------------------------------------------------------------ACGATCCGCTATATATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...............................................................................................................................................................CTAATAATA--TAAGAT-----------------------------------------------------------------------------GC-GTGGCGC---------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................24200.051000001
.............................................................................................................................................................ATCTAATAATA--TAAGAT-----------------------------------------------------------------------------GC-GTGG................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
...................................................................................................................................................................TAATA--TAAGAT-----------------------------------------------------------------------------GC-GTGGCGC---------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................20200.051000001
...............................................................................................................................................................CTAATAATA--TAAGAT-----------------------------------------------------------------------------GC-GTG.................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droBip1
GCAAAATAATAC---GAC--------ATGCCA-----AATTTCATAAGGATCGGCCGACTATATCCTATAGCTGCCATATAACTGAACGAT-CGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAC-------------C-----CA-----------------------------------------------------------------------------------------------AC-TTT------------------------A----GCTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTA-GCTTTCCTTTCTTGTTTTT-TTAT-TTTT---------------------T---------TTTTTCCGG-----------------------------TC-------------------TTTCAGAATTTG---------GAAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACATAATAAGT--A---TAGGTAACA-------------TGTAATGAAACTCTGTTTTGTGAGT-------------------------------------------------------------------------------GTTTTCAGCATTTAAATCTATAATATAAACCTC-----------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------AA-A----C-----------------------CAATCTGCAAGGGTATACAAACTTCGGCGT--GCCGAAGTTA-GCTT-CCTTTCTTGTTCA---TAG-TATTTTTAGTAATATTTTA---A-G-G---------------TTA--------------------------AT-----------CTTGGTAATATTACAAATAAAA---------ATAT-----------ACTTATTAATTAGTG-------------CG-SizeHit CountTotal NormTotal
No Reads
droFic1
GTCTTGAGT-------------------TTCAAATTAAATTTCATCAAAATCGCACAACTATATCATATAGCTCTCGTA----TGAACAATATGGAACATTAATATGTATTTTTCTC---------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAT----AAT------------------------G----ACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTA-TCTT-CTTTTCTTGTTTTC-ATAA-TCTTTTTAACAAGATTGTC---T----------------------------AAAATA-------------T--TTTAAATTAAAT---------TTACTGACTATG---------GAAA-----------CCT---TACTAAATG-------------CG-SizeHit CountTotal NormTotal
No Reads
droEle1
ATATAAGT---C---GAC--------------------------------------TAACAAATCATATAGCCGCCATA----GGAACGAT-CGAAAAAATCAT-------------CGGA-------------------------------------------AAAT--TTAAAATCGTCA---TTCTTAACT------------------------TAC--ATGTGGTCGTTTTATAGAATATAT-TTATTGT-----------------------------------------------------------------------------------------------------------------------------------AAT------------------------A----GCTCCAAGAGTGTATATCCTTCGGCTT--GCCGAAGTTT-GCTT-CCTTTCTTGTTAT----GG-TCTTTCTGACAAATATTTATATTT-TC----TATT----T---------------------------------------------CAGGTTTTCTATGAGAA-AAGAAAAAAATTCTCAATACTAATTGTCCAACGTACAA-------------GGTATGTSizeHit CountTotal NormTotal
No Reads
droRho1
GCCAATTAATCC---GAC--------CTTCCA-----AGTTTCATAGGGATCGGCCGACTTAAGAATGCA----TCATA----TGAATAATTT----------------------------------------------------------------------------------------------------------------------------------------------TGGAGAATATAATTTAC-A---------------------------------------------------------------------------------------------------------------------------------GA-A----------------------------TATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTA-GCTTTCCATTCTTTTTTT--GTGG-TTTGCTTAGCTACTTTGAT---TT-TG----CA-------TTTT-----------------------------TCTTTGTTTGAT---------TCGCACAGCA------------ATC-----------GTGAGTCAGTAAGTA-------------AGASizeHit CountTotal NormTotal
No Reads
droBia1
ATTCAATT---TTT-GAC--------ATATT-------ATCTTA-----------------------------------------------------------------------------------------------------------------------TAATATTGGGAA----TATACATTTTTATATTTTTAATAAAATTATTCAATTTAATAAAA---T--------TATTGATTATTTTT-----------------------------------------------------------------------------------------------------------------------------------------TAT------------------------A----GCTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTA-ACTT-CCTTTCTTGTTTTT-TTTTTAAA---------T------------T---------TTAATTGATATTCTTAATGGTA-------------T--TCTAAATCGAA---------------------------------------------------ATAACAAGTAAGAAAAGTTTATATGTSizeHit CountTotal NormTotal
No Reads
droTak1
AAATATTT---CCG---A--------ATTTCAATTTTAATTTAATTAAAATCGGACGACTATATCATATAGCTGCCATA----GGAACGAT-CGGAAAATTAAT-------------GAGA-------------------------------------------AATA--TTAGAAAATTGA-------------------------------------AC--ATTTTTG------------------------------------------------------------------------------------------------------------------------------------------CGATTTGTTTATTAATA-G-----------GAA--------------TGATCTGCAAGGGTATATAAGCTTCGGCTG--GCCGAAGCTA-GCTT-CCTTTCTTGTTTTT-TTGT-TTTT--TAAATATATTAAA---T------------------GGCACA----------ATGTTAACATATT-TA-----------TTCAGTATCATAGAAAAATATT---------ACAA-----------AATTGCAGTATAATATCATATT--GGTTTT-SizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTCGT---GCA---TAATTAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTATA---T-A-T---------------ATT--------------------------CT-----------ATTAGGGATTTAAAAGAGTATG---------AAAA-----------GTTTGCAGCCAAATATGAAACT--GATGTCASizeHit CountTotal NormTotal
No Reads
dm3
CCGCCAAA-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTT-----------------------ATA--------------------------AT-----------TTTATTAGTTCTGTAAATTTTG---------ATAG-----------ATTTGCCAACAAA------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................TGCCACC----CTCACGAT-TTTGAAATTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGTTCTGTAAATTTTG---------ATAG-----------A..............................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000001000000000200000000000000000000000000
........................................................................................GAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AACTGCCACC----CTCACGAT-TTTGAAATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTGTAAATTTTG---------ATAG-----------ATT............................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCCAAA-------------------------------------------------------------AACTGCCACC----CTCACGAT-T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACTGCCACC----CTCACGAT-TTTGAAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTTCTGTAAATTTTG---------AT............................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTGTAAATTTTG---------ATAG-----------ATTTGC.........................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TCACGAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA.....................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AA-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGTTCTGTAAATTTTG---------ATAG-----------ATT............................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCAAA-------------------------------------------------------------AACTGCCACC----CTCACGAT-TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGTTCTGTAAATTTTG---------ATAG-----------AT.............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTGTAAATTTTG---------ATAG-----------ATTT...........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AACTGCCACC----CTCACGAT-TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAGTTCTGTAAATTTTG---------ATA...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTGTAAATTTTG---------AT............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TCACGAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATT...................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAA-------------------------------------------------------------AACTGCCACC----CTCACGAT-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------------ATA--------------------------AT-----------TTTATTAGTTCTGTAAAT...........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GCCACC----CTCACGAT-TTTGAAATTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAAA-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--------------------------AT-----------TTTATTAGTTCTGTA..............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------------ATA--------------------------AT-----------TTTATTAGTTCTGTAAATT..........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTG---------ATAG-----------ATTTGCCAAC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTCACGAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CACC----CTCACGAT-TTTGAAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AACTGCCACC----CTCACGAT-TTTGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A-------------------------------------------------------------AACTGCCACC----CTCACGAT-TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------------ATA--------------------------AT-----------TTTATTAGTTCTGTAA.............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTT-----------------------ATA--------------------------AT-----------TTTAT........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTGTAAATTTTG---------ATAG-----------...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................T-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTT-----------------------ATA--------------------------AT-----------TTTAT........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A-------------------------------------------------------------AACTGCCACC----CTCACGAT-TTTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTCACGAT-TTTGAAATTTTT-------------TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTGTAAATTTTG---------ATAG-----------ATT............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTCTGTAAATTTTG---------ATA...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTAAATTTTG---------ATAG-----------...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTT-----------------------ATA--------------------------A.........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AACTGCCACC----CTCACGAT-TTTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------------------ATA--------------------------AT-----------TTTATTAGTTCT.................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTT-----------------------ATA--------------------------AT-----------TTTATTAG.....................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTT-----------------------ATA--------------------------AT-----------TTTA.........................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GAAGTTCT---TTC---T--------GTATT--------------------------------------------------------------------------------TATCTT---------------------------------------------GAAATATT----------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------CT--GCTTAAAATA------------------------T-TTT-------------T--------T---------TTTTTTTTC-----------------------------TC---------TTTAAAAGTTTAACAAAATAAA---------GCAG-----------TGAAGTTAGTAAAAA---------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TTATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--------------------------AT-----------TTTAGAGACTTAACAGAATATG---------AAAA-----------GTTGGCTAGCAAGTATGAAACC--GACGTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TATATATAT---------------AT-------------TTTAATGAGATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGCCGTTTCGATTGTGACGCAAGTTGAAAAATATATCTGCTTATCTAATTTATGTTCTCCCCATTATTTACTGAATAAATAAGAACAA----------------------------------------------------------------------------------------------------------------------------TTTTTTT---T-T-G---------------TCT--------------------------AG-----------TTCAATGGTTTAATGGTATTTG---------AAAA-----------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CTTGATTAA---------------AA-----------------------------------TATTATGAAACTGCAATG----GG-----------------------------------------------------------------------CTTCCGA---TA--------------------------------------------------TAC--AT-TAGTTG---------------------------TTTTTCTA--------------------------------------------------------------------------------------------------------------CACATATATTAT------------------------T----ACTGCAAGGGTATGTGAGTTTCGGCTT--GCCGAAGCTA-GCTT-CCCTTCTTATTTTG-GTTA-TACTCTTAA-----------------------------T---ATTA------------------------C--CT-----------TT----------------------------------------------------------------------TC-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GGATCAGC-----------------------------------------------CTATTATATGATATAGTAA-----------------------------------------------------------CGAACTATAGAGGATGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTGGATGATGGCAATAGGCTTATTGGTC-G-----------TCA----------------AAATTTAAGGGTATATAAAATTCGGCTTTGGT-TTTTATA-GCGT-GTTCGT--------T-------------------GTT---------------------------------------------------------------------------------------------------------------------------------------------CT-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTT-GGGT-TTTTTCTATCGATTGTGTGTG-T-G-TGTTGCATT----T--------------------------------------------GCAATTCATTTTACAAATGGCA---------AACA-----------A--ATTTAGTAAACAACAAACC--AATCCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATAAAACC---CCA---G--------ATCCCAA----AATTTGAATGTGATCGGATAAATATAACACA-AGCTACAGTC-----------------------------------------------------------------------------AA------------------------------------------------------------TATAA---TAATCG---------------------------GCTCTGCT-------------CCCAGCTCTGCCGG--------------------------------------------------------------------------------------------AAG------------------------C----GCTGCAAGGGTATATAAACTTCGGCATA-GCCGATGTTA-GCTT-CTTTGA--------TATTT-TTTGTTCAT-----------------------------T---TTTA------------------------T--T----------TTTATAAAATAAACAAAAAATA---------AACA-----------AA----AAGAAAAAACGAAA-C--AAAATAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................AATATAACACA-AGCTACAGTC-----------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25101000
...................................................CGGATAAATATAACACA-AGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTA-GCTT-CTTTGA--------TATTT-TTTGTT...........................................................................................................................................................2690.11100010
..........................................................................................................................................................................................................................TATAA---TAATCG---------------------------GCTCTGCT-------------CCCAGC......................................................................................................................................................................................................................................................................................................................................................................25200.10202000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGGTATATAAACTTCGG..........................................................................................................................................................................................................24110.09100010
............................CCCAA----AATTTGAATGTGATCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
droVir3
TCAAGATA---TCTTG-C-----------CCA-----AATTTGGTATTTATTGTG------TCC-------------------------------------------------------------------------------ACTATGCTC-------------------------------------------------------------------------------CTCATATAAG-TA---------------------TATATATATATGATCTTGGCCCT-----------------------------------------------------------------------------------------------AT-TCTAACACATCTGCAAAGCTGTAAGGCAAATGTGTACAAGGGTATTAAATCTTCGGCGT--GTCGAAGATATGCCT-ACTTTCTCGTCCCT-TTTT-TTTGCTAAATTATCAT----------------------T---TTTA------------------------T--C-----------TTATAACTTGAGCAAAAT---------------------------------------------------GATGA-ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGGGTATTAAATCT..............................................................................................................................................................................................................18200.051000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGGGTATTAAATCTTC............................................................................................................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATTAAATCTTCGG..........................................................................................................................................................................................................19200.051000000010000000000000000000000000000000000000000000000000000000
droMoj3
GTCTATCA---TCCAG-T----------GT------------------------------------------------------A-----------------------------------------------------------------------TCTATGA---TATATATCAT-----------------------------------------------------------------------------ATAGTAGCTC---------------------------------------------------------------------------------------------------------CACTTGCTACACACAAA-TAT------------------------A----TGCGCAAGGGTATATAGATTTCGACTC--TTCTAGGAAAATGGT-GTTTTCTTATTCCTTTTCG-CTCGCTCAGTTATTATT---------------------------------------------------------------------------------------------------------------------------------------------TT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTATAACTATTC---TTT-----------------------------------------------------------------------------------------------------AAACATTTGAATAAAAAACTAT----------------------TAGCATTGGAAA----GCTATTGTTCTAT-TTCTCAGCAGGAACAATCAGATGAA-------------------------------------------AATAGT-------------T-----GG-----------------------------------------------------------------------------------------------AT-T----C-----------------------CGTTTTTCAAGGGTATATAATCTTCGGCGT--TCCAAAGCTG-GCTT-TCATTCTTAGTTAT-TTTTTTTA---------T------------T---------TTTTTTTGC-----------------------------TT---------TCTGGTGGTTT------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:05 AM