ID:

dan_1243

 Coordinate:

scaffold_13099:662199-662349 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.1 -23.1 -22.8

Flybase annnotation

exon [dana_GLEANR_7261:7]; CDS [Dana\GF22818-cds]; intron [Dana\GF22818-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo-
mature
  1. scaffold_4764:222-245 -
  2. scaffold_9691:3466-3489 -
  3. scaffold_12984:366643-366666 -
  4. scaffold_13043:455628-455651 -
  5. scaffold_13043:465226-465249 -
  6. scaffold_13043:502026-502049 -
  7. dan_1243  scaffold_13099:662236-662259 -
  8. scaffold_13099:1017845-1017868 -
  9. scaffold_13099:1390640-1390663 -
  10. scaffold_13099:1949863-1949886 -
  11. scaffold_13099:1975347-1975370 -
  12. scaffold_13186:48905-48928 -
  13. scaffold_13230:2777507-2777530 -
  14. scaffold_13260:686901-686924 -
  15. scaffold_13261:265248-265271 -
  16. scaffold_13266:19127399-19127422 -
  17. scaffold_13266:19726958-19726981 -
  18. scaffold_13269:11726-11749 -
  19. scaffold_13335:2649322-2649345 -
  20. scaffold_13337:22624706-22624729 -
star
  1. scaffold_5888:1961-1982 -
  2. scaffold_12902:434318-434339 -
  3. scaffold_12911:1686795-1686816 -
  4. scaffold_12947:203062-203083 -
  5. scaffold_12947:785872-785893 -
  6. scaffold_12947:920665-920686 -
  7. scaffold_13089:614025-614046 -
  8. dan_1243  scaffold_13099:662326-662347 -
  9. scaffold_13099:1017935-1017956 -
  10. scaffold_13099:1624121-1624142 -
  11. scaffold_13118:9368-9389 -
  12. scaffold_13230:1116930-1116951 -
  13. scaffold_13258:1307572-1307593 -
  14. scaffold_13258:1347086-1347107 -
  15. scaffold_13280:1181799-1181820 -
  16. scaffold_13280:1278810-1278831 -
  17. scaffold_13280:1282956-1282977 -
  18. scaffold_13335:2643730-2643751 -
  19. scaffold_13337:22429181-22429202 -
  20. scaffold_13767:1340501-1340522 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTTAAAGACGCGTACGGCTGTTTCCAACATTTTTATTAGAAAATCGATTCGATGGTGAAATTCTCATAAGGATCGGTTAGCTATATACGATCTGATATATATTTAATTGTGTAAGCTTCTGCAAGGGTATATCAACTTCGGCTCCGCTCGAAGTTAGCTTTCCTTTTTTGTTAATAATCAATTTATCCTATTTTTTTTAGAATTTGAACGTACACATTACCCAGATGTTTTTGCGAGAGAAAGATTGGCT
****************************************************...((((.....))))..((((((..((....))..))))))(((((((......(((((........)))))..)))))))(((((((((...)).)))))))........*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
 M058
embryo
 M044
female body
 V106
head
...................................................................TAAGGCTCGGTTAGCTA....................................................................................................................................................................... 17 1 4 0.25 1 1 0 0 0 0
...................................................................................................ATATTAAATTTGGTAAGCTTCT.................................................................................................................................. 22 3 7 0.14 1 0 1 0 0 0
.....................................................TGGTGAAATTCTTATAAGGATCGGTT............................................................................................................................................................................ 26 1 7 0.14 1 0 0 0 1 0
.....................................................................................................................................................................................................TTAGATTTTGAACGACCACA.................................. 20 3 11 0.09 1 0 0 1 0 0
...............................................................................................................................................TCCGCTCGAAGTTAGCTTTCCTTATTT................................................................................. 27 1 12 0.08 1 0 0 1 0 0
............................................................................................................................................GGCTCCGCTCGAAGTTAGCTTTCC....................................................................................... 24 0 20 0.05 1 0 0 0 0 1
..................................................................................................................................TATCAACTTCGGCTCCGCTCGAA.................................................................................................. 23 0 20 0.05 1 0 0 0 1 0
....................................................ATGGTGAAATTCTCATAAGGAT................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
........................................................................................................................TCCAAGGGTATATCAACTTCGGCTCC......................................................................................................... 26 1 20 0.05 1 0 0 1 0 0
........................................................................................................................................................AGTTAGCTTTCCTTTTTTG................................................................................ 19 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ACAATTTCTGCGCATGCCGACAAAGGTTGTAAAAATAATCTTTTAGCTAAGCTACCACTTTAAGAGTATTCCTAGCCAATCGATATATGCTAGACTATATATAAATTAACACATTCGAAGACGTTCCCATATAGTTGAAGCCGAGGCGAGCTTCAATCGAAAGGAAAAAACAATTATTAGTTAAATAGGATAAAAAAAATCTTAAACTTGCATGTGTAATGGGTCTACAAAAACGCTCTCTTTCTAACCGA
***************************************************************************************...((((.....))))..((((((..((....))..))))))(((((((......(((((........)))))..)))))))(((((((((...)).)))))))........**************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M044
female body
 M058
embryo
 V106
head
............................................AGCTAAGCTACCACTTTAAGAGTATTC.................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0
...........................................................................CCAATCGATATATGCTAGACTA.......................................................................................................................................................... 22 0 2 0.50 1 0 0 0 1
.................................................................................................................................................................................TAGTTAAATCGGATAAATGAAAT................................................... 23 3 3 0.33 1 1 0 0 0
............................................................................................................................................................................ATTATTAGTTAATTAGGAAAGAA........................................................ 23 3 4 0.25 1 1 0 0 0
.........................................................................................CTAGACTATATTTAAATTGA.............................................................................................................................................. 20 2 5 0.20 1 0 0 1 0
.........................................................................................................................................AAGCCGAGGCGAGCTTCAATCGAAAG........................................................................................ 26 0 20 0.15 3 0 0 3 0
.................................................................................................................................................................................TAGTTAAATCTGATAAACAAAAT................................................... 23 3 9 0.11 1 1 0 0 0
..........................................................................................................................................AGCCGAGGCGAGCTTCGATCGAAAG........................................................................................ 25 1 20 0.10 2 0 2 0 0
...........................................................................................................................TTCCCATATAGTTGAAGCCGAGGCG....................................................................................................... 25 0 20 0.10 2 0 0 2 0
...........................................................................................................AACACATTCGTGGACGTT.............................................................................................................................. 18 2 11 0.09 1 1 0 0 0
..................................................................................................................................................................................................................................ACAAAAAAGCTCTTCTTCTAA.... 21 3 16 0.06 1 0 0 1 0
.......................................................................................................................GACGTTCCCATATAGTTGAAGCCGAG.......................................................................................................... 26 0 20 0.05 1 0 0 1 0
..........................................................................................................................GTTCCCATATAGTTGAAGCCGA........................................................................................................... 22 0 20 0.05 1 0 1 0 0
................................................AAGCTACCACTTTAAGAGTATTCGT.................................................................................................................................................................................. 25 1 20 0.05 1 0 0 1 0
.............................................................................................................................................CGAGGCCAGCTTCAATCGAAA......................................................................................... 21 1 20 0.05 1 0 1 0 0
..................GACAAAGGTTGTAAAAATAAT.................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
............................................................................................................................................................CCGAAAGGAAAAAACAAT............................................................................. 18 1 20 0.05 1 0 0 1 0
.....................................................................................................................AAGACGTTCCCATATAGTTGAAGCC............................................................................................................. 25 0 20 0.05 1 0 1 0 0
........................................................................................................................................GAAGCCGAGGCGAGCTTCAATCG............................................................................................ 23 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13099:662149-662399 - dan_1243 TGTT-----AAAG----A------------------------CGCGTACGGCTGTTTCCAACATTTTTATTAGAA--AATCGATTCGATGGTGAAATTCTCATAAGGATCGGTTAGCTATATACGA-------------------------------------TC-------------------------------------------------------------------------------------------------------------------TGATATATATTTAATTG---------------------------------------------------------TGTAA--GCTTCTGCAAGGGTATATCAACTTCGGCTCCGCTCGAAGTTAGCTTTC-CTTTTTTGTTAATAATCA--------------AT----------------------------TTA---TCCTATTTTTTTTAGAATTTGAA--CGTACACAT---TACCCAGATG-TTTTT-GC-GAGAGAAAGATTGGCT---------
droBip1 scf7180000393308:21777-22020 - TTGC-----AGATC--GAAGCTTGGGACT------------------------TTTTCAGAGGT-TTTATTGTAATTAATTGGTTTTATTATGATATTCTTATAAGGATCGGCCAACTATATCCGATGTTTGCAA-------------------------------------TAT---------------------------------------------------------------------------------------------------------------ATATCCGG-----------------------------------------------------------------TTTTAACTGCAAAGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTAATTATGG--------------GA----------------------------CGA---TGACACG--TTTGGGACTTTAAA--CTTAT--AT---GAAC-TAGTG-TTTCT-GC-CGATAAAAA------------AATT
droKik1 scf7180000297786:1962-2178 - TGTC-----AAACT-----------------------------GTAAAC----------ATAATAAGTATAGGTA--AA---AT---TTAATGAAACTCTGTTTAGTGTCTGTTTTCGGCATTA---------------------------------------------------------------------------T----AA-------------------------------------------------------------------------------------------------------------------------------------TTTATAATATAAATATGAAAACCAATCTGCAAGGGTATACAAGCTTCGGCGT--GCCGAAGTTAGCTTC--CTTTCTTGTTTTTTTTTA--------------TTTAT-------------------------------TT----ATTTTTG------TGAA--CAAGTGTCCATACAACAAAATGCTATTA-AA--AAGAAAAGA---------------
droFic1 scf7180000453928:209808-210054 + TGAT-----AAAA-----------------------------ATCGGAA-----------------------------------------------------------------AACTATATCATATAGCTCCCA-------------------------------------TATGAACTATAG------TCGAAAATATGGAAAATGAATAGAAAAATCGTCTTAGCTTCGATGTTGTTTAGCCT-------------------------------------------------TT---------------------A-------------TGCAT--TTTG------------------ATGACTGCAAGGGTATATGAGCTTCGGCTT--TCCGAAGCTAGTTTC--CTTTCTTGTTTTTAATTCTTTTTGCAGTTGATATTAT-------------------------------TT----TTGTTTTA------GGAAACTT--TTAG---CATCCAAAAATTGTTT-GC-AAGACAAGG----------------
droEle1 scf7180000490996:665581-665780 + AGCT-----GCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATAGCTTCAATGTTTTTAAACATATACGCAAGTAAATTATAATTTTAAT----GTTTTCAAAAATGTTTAATTC---------------------T-------------TGCA-------------------------ATAGCTGCAAGGGTATATGAACTTCGGCTT--GCCGAAGTTTGCTTT--CTTTCTTGTTTATT---T--------------ATTATTTTTAT-------------------------------TTTGTTTAATATTTGAA--T--------------------------------CGTGTTAATCATGCC--AATATTT
droRho1 scf7180000779834:32439-32646 - TTTT-----AAAGTTGGGAAGTTTGGATTTTTTTTGA---------------------------------------------------------------------------------GTATTAAGAATGCATCA-------------------------------------TATGAATAATTT------TGGAGAATAT----AATTTACAG--------------------------------------------------------------------------------------------------------------------------------------------------AGTATTCTGCAAGGGTATATCACCTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTATAATTA---------------TAATTATTAT-------TTATTGTTGTATTTT---TTATTGCGGTTTTCC---------------------------TGAT--TTTTT-GC-GATCGAAGG----------------
droBia1 scf7180000302358:7603-7807 + TAGTTCTGA----------ATTTCGAATTAAATTTGATCAAAATCGGAC-----------------------------------------------------------------GACTTTATCATATAGCTGTA--------------------------------------T--------------------------------------------ATCA-----------------TTTAGCC------GTATT------------------------------------GATTGTATAACTGTATTGATTATTTCT-------------T----------------------------AAAACTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTAACTTT--CTTTCTTGTTATTAGCTA------------CTATTAG-------------------------------TT----CAGTTTCAA----------T-------------------------------------GAAAATTAAAATACAAATT
droTak1 scf7180000415867:267759-267989 + AAAA--------------------------------------ATCGGAC-----------------------------------------------------------------GACTATATTATATAGCTGCAATAGGGAAGGATAAATAAAATAATATTAAAAT--------------------AATACGAAA-------------------------------------------TTTAAAAT-------------------------------------------------TT---------------------T-------------TGCGA--TTTGTAAG-TTAATAGG---AACGATCTGCATGGGTATATAAGCTTCGGCTG--GCCGAAGCTAGCTTT--TTTTCTTGTTTTTA---T--------------ATTATTTTATT-------------------------------TT-------GATTTGGA--AGAACAAAA---TATATGTTTG-CTATTAGAATTAAGAAAAATAAGCT---------
droEug1 scf7180000408984:456808-456894 - TTTT-----ACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------AT----------------------------ATA---AAATAATATTTTCAGAATTTGAA--CGAACTCAC---TACCCAGATG-TATTT-GC-CCGCGAACGTTTGGCA---------
dm3 chr4:738252-738329 + TTCA-----TAATT-----------------------------ATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------TATTTATTTTAGAGTTTGAA--CGAACACAC---TATCCAGATG-TTTTT-GC-CCGCGAACGTTTGGCT---------
droSim2 3r:1198201-1198310 + ATATATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTGCAAGGGTATATGAGCTTCGGCCT--GCCGAAACCAACTTC--CCGTCTTGTTTCATTTAT--------------ATTAT-------------------------------TT----CTTTTTC------TGAA--T-------------------------------------GGGGCTTGTTAGCCAAATG
droSec2 scaffold_39:212482-212564 + ATACATGCA---------------------------------------T-----------------------------------------------------------------AATC-----ACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCTAAGGTATAACGGCTTCGGCTTTGGCCGAAGTCAGCCTC--ATTTCTTGGCTTTTA------------------------------------------------------------------------------------------------------------------------TTTATC---------
droYak3 4:799778-799839 + TATT-----G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCAGAGTTTGAA--CGAACACAC---TATCCAGATG-TTTTT-GC-GCGCGAACGTTTGGCT---------
droEre2 scaffold_4512:251360-251485 - TTAGGTCCA----------TTTTGGT-----------------ATTA------------------------------------------------------------ATCATTAATTTATAATCGA-------------------------------------ACTTATACATTTGAATTTTTATCGACGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGAATTTGAA--CGAACACAT---TATCCGGATG-TTTTT-GC-GCGAGAAAGGCTTGCA---------
dp5 Unknown_group_14:56014-56108 - TCCT-----ATAGT-----------------------------ATAAAT-----------------------------------------------------------------AACC--------------------------------------ATATTTATTT--------------------GTCGTGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGAATTTGAG--CGAACACAT---TACCCGGACG-TATTT-GC-GCGAGAGAGACTTGCT---------
droPer2 scaffold_106:65408-65502 + TCCT-----ATAGT-----------------------------ATAAAT-----------------------------------------------------------------AACC--------------------------------------ATATTTATTT--------------------GTCGTGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGAATTTGAG--CGAACACAT---TACCCGGACG-TATTT-GC-GCGAGAGAGACTTGCT---------
droWil2 scf2_1100000004756:50018-50248 + TGAT-----TAAG-----------------------------ATCGGGC-----------------------------------------------------------------GACTATATCATATAGCTTCCA-------------------------------------TAGGAACAATCG-------------------------------------------------------------------GTGGTGAACAGTGACTTTGATCAATAT----------------------------CTTCGTTATTTCCTAAGCCGTTCTTTCGCAAATTTTAGACCTTTTACACA---AAAAACTAGCAAGGGTATACAAACTTTGACGC-GGTCAAAGTTAGCCCCGGCCCTCTGGTTTTTC---T--------------TTTATTTATATGTAACTTGAAAAA--------ACATTT----TTTTTTT-------GAA-------------------------------------------------A---------
droVir3 scaffold_13052:1529382-1529469 + CTTT-----GACGT------------------------------------------------------------------------------------------------------TAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--------------AT----------------------------ATC---CTTTAATGTTCTTAGAGTTTGAA--AGAACACAT---TATCCGGACG-TCTTT-GC-CCGCGAACGATTGGCT---------
droMoj3 scaffold_6498:532325-532399 + AATAATTAA----------------------------------------------------------------------------------------------------------------------------------------------------TATTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTCAGAGTTTGAA--AGAACGCAT---TACCCGGACG-TATTT-GC-ACGTGAACGATTGGCT---------
droGri2 scaffold_14853:7960316-7960386 - GCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--CTTTGTTGTTGTTGTTAT--------------ACTTC-------------------------------TTCTTCTTCTTTCACAAATTAAA--TGCAAATA----TACATAGATG-T---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGTT-----AAAG----A------------------------CGCGTACGGCTGTTTCCAACATTTTTATTAGAA--AATCGATTCGATGGTGAAATTCTCATAAGGATCGGTTAGCTATATACGA-------------------------------------TC-------------------------------------------------------------------------------------------------------------------TGATATATATTTAATTG---------------------------------------------------------TGTAA--GCTTCTGCAAGGGTATATCAACTTCGGCTCCGCTCGAAGTTAGCTTTC-CTTTTTTGTTAATAATCA--------------AT----------------------------TTA---TCCTATTTTTTTTAGAATTTGAA--CGTACACAT---TACCCAGATG-TTTTT-GC-GAGAGAAAGATTGGCT---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................GGCTCCGCTCGAAGTTAGCTTTC-C.....................................................................................................................................................24200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................TATCAACTTCGGCTCCGCTCGAA.................................................................................................................................................................23200.051100000
.......................................................................................ATGGTGAAATTCTCATAAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGTTAGCTTTC-CTTTTTTG..............................................................................................................................................19200.051001000
droBip1
TTGC-----AGATC--GAAGCTTGGGACT------------------------TTTTCAGAGGT-TTTATTGTAATTAATTGGTTTTATTATGATATTCTTATAAGGATCGGCCAACTATATCCGATGTTTGCAA-------------------------------------TAT---------------------------------------------------------------------------------------------------------------ATATCCGG-----------------------------------------------------------------TTTTAACTGCAAAGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTAATTATGG--------------GA----------------------------CGA---TGACACG--TTTGGGACTTTAAA--CTTAT--AT---GAAC-TAGTG-TTTCT-GC-CGATAAAAA------------AATTSizeHit CountTotal NormTotal
No Reads
droKik1
TGTC-----AAACT-----------------------------GTAAAC----------ATAATAAGTATAGGTA--AA---AT---TTAATGAAACTCTGTTTAGTGTCTGTTTTCGGCATTA---------------------------------------------------------------------------T----AA-------------------------------------------------------------------------------------------------------------------------------------TTTATAATATAAATATGAAAACCAATCTGCAAGGGTATACAAGCTTCGGCGT--GCCGAAGTTAGCTTC--CTTTCTTGTTTTTTTTTA--------------TTTAT-------------------------------TT----ATTTTTG------TGAA--CAAGTGTCCATACAACAAAATGCTATTA-AA--AAGAAAAGA---------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGAT-----AAAA-----------------------------ATCGGAA-----------------------------------------------------------------AACTATATCATATAGCTCCCA-------------------------------------TATGAACTATAG------TCGAAAATATGGAAAATGAATAGAAAAATCGTCTTAGCTTCGATGTTGTTTAGCCT-------------------------------------------------TT---------------------A-------------TGCAT--TTTG------------------ATGACTGCAAGGGTATATGAGCTTCGGCTT--TCCGAAGCTAGTTTC--CTTTCTTGTTTTTAATTCTTTTTGCAGTTGATATTAT-------------------------------TT----TTGTTTTA------GGAAACTT--TTAG---CATCCAAAAATTGTTT-GC-AAGACAAGG----------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCT-----GCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATAGCTTCAATGTTTTTAAACATATACGCAAGTAAATTATAATTTTAAT----GTTTTCAAAAATGTTTAATTC---------------------T-------------TGCA-------------------------ATAGCTGCAAGGGTATATGAACTTCGGCTT--GCCGAAGTTTGCTTT--CTTTCTTGTTTATT---T--------------ATTATTTTTAT-------------------------------TTTGTTTAATATTTGAA--T--------------------------------CGTGTTAATCATGCC--AATATTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTT-----AAAGTTGGGAAGTTTGGATTTTTTTTGA---------------------------------------------------------------------------------GTATTAAGAATGCATCA-------------------------------------TATGAATAATTT------TGGAGAATAT----AATTTACAG--------------------------------------------------------------------------------------------------------------------------------------------------AGTATTCTGCAAGGGTATATCACCTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTATAATTA---------------TAATTATTAT-------TTATTGTTGTATTTT---TTATTGCGGTTTTCC---------------------------TGAT--TTTTT-GC-GATCGAAGG----------------SizeHit CountTotal NormTotal
No Reads
droBia1
TAGTTCTGA----------ATTTCGAATTAAATTTGATCAAAATCGGAC-----------------------------------------------------------------GACTTTATCATATAGCTGTA--------------------------------------T--------------------------------------------ATCA-----------------TTTAGCC------GTATT------------------------------------GATTGTATAACTGTATTGATTATTTCT-------------T----------------------------AAAACTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTAACTTT--CTTTCTTGTTATTAGCTA------------CTATTAG-------------------------------TT----CAGTTTCAA----------T-------------------------------------GAAAATTAAAATACAAATTSizeHit CountTotal NormTotal
No Reads
droTak1
AAAA--------------------------------------ATCGGAC-----------------------------------------------------------------GACTATATTATATAGCTGCAATAGGGAAGGATAAATAAAATAATATTAAAAT--------------------AATACGAAA-------------------------------------------TTTAAAAT-------------------------------------------------TT---------------------T-------------TGCGA--TTTGTAAG-TTAATAGG---AACGATCTGCATGGGTATATAAGCTTCGGCTG--GCCGAAGCTAGCTTT--TTTTCTTGTTTTTA---T--------------ATTATTTTATT-------------------------------TT-------GATTTGGA--AGAACAAAA---TATATGTTTG-CTATTAGAATTAAGAAAAATAAGCT---------SizeHit CountTotal NormTotal
No Reads
droEug1
TTTT-----ACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------AT----------------------------ATA---AAATAATATTTTCAGAATTTGAA--CGAACTCAC---TACCCAGATG-TATTT-GC-CCGCGAACGTTTGGCA---------SizeHit CountTotal NormTotal
No Reads
dm3
TTCA-----TAATT-----------------------------ATTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------TATTTATTTTAGAGTTTGAA--CGAACACAC---TATCCAGATG-TTTTT-GC-CCGCGAACGTTTGGCT---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAA--CGAACACAC---TATCCAGATG-TT................................27110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000050001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCAGATG-TTTTT-GC-CCGCGAACG................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG-TTTTT-GC-CCGCGAACGT...............2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT-GC-CCGCGAACGTTTGG...........2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000010000000000000000200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGATG-TTTTT-GC-CCGCGAACGTT..............2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGATG-TTTTT-GC-CCGCGAAC.................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTAGAGTTTGAA--CGAACACAC---.............................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGAGTTTGAA--CGAAC....................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATG-TTTTT-GC-CCGCGAACG................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA--CGAACACAC---TATCCAGATG-T.................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-GC-CCGCGAACGTTTGGC..........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGATG-TTTTT-GC-CCGCGAACGT...............2513.0030000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA--CGAACACAC---TATCCAGATG-TTT...............................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATG-TTTTT-GC-CCGCGAACG................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAGAGTTTGAA--CGAACACAC---.............................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTTTAGAGTTTGAA--CGAA.....................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAA--CGAACACAC---TATCCAGATG-T.................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGAGTTTGAA--CGAACACAC---TAT..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTTTAGAGTTTGAA--CGAACACAC---.............................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCAGATG-TTTTT-GC-CCGCGAACGT...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CGAACACAC---TATCCAGATG-..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA--CGAACACAC---TATCCC.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-GC-CCGCGAACGTTTGG...........2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTAGAGTTTGAA--CGAACACAC---.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTTAGAGTTTGAA--CG.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATG-TTTTT-GC-CCGCGAACT................2111.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAGAGTTTGAA--CGAACACAC---TA...........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-GC-CCGCGAACGTTTG............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA--CGAACACAC---TATCCAGATG-TT................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTTTAGAGTTTGAA--CGA......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA--CGAACACAC---TATCCAGATG-TT................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------TATTTATTTTAGAGTTTGA............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA--CGAACACAC---TATCCAGATG-..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTAGAGTTTGAA--CGAACACAC---T............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTAGAGTTTGAA--CGAACACAC---T............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAC---TATCCAGATG-TTTTT-G...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG-TTTTT-GC-CCGCGAACGTTTGGC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAGAGTTTGAA--CGAACAC..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCAGATG-TTTTT-GC-CCGC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTAGAGTTTGAA--CGA......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTTTAGAGTTTGAA--C........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATG-TTTTT-GC-CCGCGAACGTT..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGAGTTTGAA--CGAACACAC---TATC.........................................2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGATG-TTTTT-GC-CC.......................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-TTTTT-GC-CCGCGAACGTTTGGC..........2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGAGTTTGAA--CGAACACAC---T............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTAGAGTTTGAA--A........................................................1930.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTAGAGTTTGAT--.........................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
ATATATTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTGCAAGGGTATATGAGCTTCGGCCT--GCCGAAACCAACTTC--CCGTCTTGTTTCATTTAT--------------ATTAT-------------------------------TT----CTTTTTC------TGAA--T-------------------------------------GGGGCTTGTTAGCCAAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTC------TGAA--T-------------------------------------GGGGCTTGTTA........2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................ATATGAGCTTCGGCCT--GCC....................................................................................................................................................................1911.00101000000000000000
droSec2
ATACATGCA---------------------------------------T-----------------------------------------------------------------AATC-----ACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCTAAGGTATAACGGCTTCGGCTTTGGCCGAAGTCAGCCTC--ATTTCTTGGCTTTTA------------------------------------------------------------------------------------------------------------------------TTTATC---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................TAAGGTATAACGGCTTCGGCTTTGGC.....................................................................................................................................................................2611.0011000
droYak3
TATT-----G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCAGAGTTTGAA--CGAACACAC---TATCCAGATG-TTTTT-GC-GCGCGAACGTTTGGCT---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTAGGTCCA----------TTTTGGT-----------------ATTA------------------------------------------------------------ATCATTAATTTATAATCGA-------------------------------------ACTTATACATTTGAATTTTTATCGACGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGAATTTGAA--CGAACACAT---TATCCGGATG-TTTTT-GC-GCGAGAAAGGCTTGCA---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TCCT-----ATAGT-----------------------------ATAAAT-----------------------------------------------------------------AACC--------------------------------------ATATTTATTT--------------------GTCGTGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGAATTTGAG--CGAACACAT---TACCCGGACG-TATTT-GC-GCGAGAGAGACTTGCT---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCCT-----ATAGT-----------------------------ATAAAT-----------------------------------------------------------------AACC--------------------------------------ATATTTATTT--------------------GTCGTGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGAATTTGAG--CGAACACAT---TACCCGGACG-TATTT-GC-GCGAGAGAGACTTGCT---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGAT-----TAAG-----------------------------ATCGGGC-----------------------------------------------------------------GACTATATCATATAGCTTCCA-------------------------------------TAGGAACAATCG-------------------------------------------------------------------GTGGTGAACAGTGACTTTGATCAATAT----------------------------CTTCGTTATTTCCTAAGCCGTTCTTTCGCAAATTTTAGACCTTTTACACA---AAAAACTAGCAAGGGTATACAAACTTTGACGC-GGTCAAAGTTAGCCCCGGCCCTCTGGTTTTTC---T--------------TTTATTTATATGTAACTTGAAAAA--------ACATTT----TTTTTTT-------GAA-------------------------------------------------A---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................TTGATCAATAT----------------------------CTTCGTTATTTCC.................................................................................................................................................................................................................................................24200.15303000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACTTGAAAAA--------ACATTT----TTTTTT......................................................................2670.14101000
..............................................................................................................................................................................................................................................................................................................................................................TACACA---AAAAACTAGCAAGGGTATACA....................................................................................................................................................................................2780.13100010
............................................................................................................................TATAGCTTCCA-------------------------------------TAGGAACAATCG-------------------------------------------------------------------GTGG.................................................................................................................................................................................................................................................................................................................27200.10201010
...........................................................................................................................................................................................................................................................................................................................TTCCTAAGCCGTTCTTTCGCA................................................................................................................................................................................................................................21200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCCCCGGCCCTCTGG..............................................................................................................................................22200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................AAACTTTGACGC-GGTCAAAGTTAGC...........................................................................................................................................................25200.05101000
.............................................................................................................................................................................AGGAACAATCG-------------------------------------------------------------------GTGGTGAA.............................................................................................................................................................................................................................................................................................................19200.05101000
..................................................................................................................................TTCCA-------------------------------------TAGGAACAATCG-------------------------------------------------------------------GTGG.................................................................................................................................................................................................................................................................................................................21200.05100010
......................................................................................................................................A-------------------------------------TAGGAACAATCG-------------------------------------------------------------------GTGGTG...............................................................................................................................................................................................................................................................................................................19200.05101000
...............................................................................................................................................................................................................................................................TGAACAGTGACTTTGATCAATAT----------------------------CT............................................................................................................................................................................................................................................................25200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCCCCGGCCCTCTG...............................................................................................................................................21200.05101000
...........................................................................................................................................................................................................................................................GTGGTGAACAGTGACTTTGATCAATAT----------------------------..............................................................................................................................................................................................................................................................27200.05101000
TGAT-----TAAG-----------------------------ATCGGGC-----------------------------------------------------------------GACTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
...............................................................................................................................................................................GAACAATCG-------------------------------------------------------------------GTGGTGAACAGTGACTT....................................................................................................................................................................................................................................................................................................26200.05100010
................................................................................................................................................................................................................................................................GAACAGTGACTTTGATCAATA...........................................................................................................................................................................................................................................................................................21200.05100001
........................................................................................................................................................................................................................................................................................................................TATTTCCTAAGCCGTTCTTTCG..................................................................................................................................................................................................................................22200.05101000
........................................................................................................................................................................................................................................................................ACTTTGATCAATAT----------------------------CTTCGTT.......................................................................................................................................................................................................................................................21200.05100010
.......................................................................................................................................................................................G-------------------------------------------------------------------GTGGTGAACAGTGACTTTGATCAATA...........................................................................................................................................................................................................................................................................................27200.05101000
...T-----TAAG-----------------------------ATCGGGC-----------------------------------------------------------------GACTATATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.........................................................................................................................TCATATAGCTTCCA-------------------------------------TAGGAAC.............................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.....................................................................................................................................................................................................................................................................................T----------------------------CTTCGTTATTTCCTAAGCCGTTCTT.....................................................................................................................................................................................................................................26200.05100010
.......................................................................................................................................................................................................................................................................GACTTTGATCAATAT----------------------------CTTCGT........................................................................................................................................................................................................................................................21200.05100100
............................................................................................................................................................................TAGGAACAATCG-------------------------------------------------------------------GTGGTGAAC............................................................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................TACAAACTTTGACGC-GGTCAA..................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................TATACAAACTTTGACGC-GGTCAAAGT...............................................................................................................................................................26200.05100010
droVir3
CTTT-----GACGT------------------------------------------------------------------------------------------------------TAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT--------------AT----------------------------ATC---CTTTAATGTTCTTAGAGTTTGAA--AGAACACAT---TATCCGGACG-TCTTT-GC-CCGCGAACGATTGGCT---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AATAATTAA----------------------------------------------------------------------------------------------------------------------------------------------------TATTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTCAGAGTTTGAA--AGAACGCAT---TACCCGGACG-TATTT-GC-ACGTGAACGATTGGCT---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--CTTTGTTGTTGTTGTTAT--------------ACTTC-------------------------------TTCTTCTTCTTTCACAAATTAAA--TGCAAATA----TACATAGATG-T---------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:05 AM