ID:

dan_1237

 Coordinate:

scaffold_13099:114451-114601 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.8

Flybase annnotation

CDS [Dana\GF22822-cds]; exon [dana_GLEANR_7279:1]; intron [Dana\GF22822-in]

Repeatable elements

NameClassFamilyStrand
Gypsy7-I_Dpse-intLTRGypsy-
mature
star
  1. scaffold_13099:92823-92849 -
  2. dan_1237  scaffold_13099:114552-114578 -
  3. scaffold_13099:117707-117733 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGAAGGAGAAGAGAGTACAGGAGGCTACGATCAGCCTAGTGGGAGCTACGGTAATGAAGGGAAGACCCGGGAATAGGGCGACTATTTAGGAAAGGGCATGAGGCAGTGGCTCTTAGCTACTGGAAGAAAGTAGCAGGTACCTCGACTGCTCGGGAAAGTGGAAAGTTTTCTGTTCTGGGTGTTGAGCACTGAATGTCTACAAGCCATCGAGTCCAAAATGTCTAAAAAACGGGCGAGCGAATATGGCGGAT
*************************************************************************(((.((.........((((((..(((..((((((((..(((.((((((.......)))))))))..))...)))))).......))).....)))))).......)).)))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V106
head
 V055
head
 V039
embryo
........................................................................................................................................................................................................................AATGTCTAAAAAACGGGCGAGCGA........... 24 0 3 1.00 3 2 1 0 0 0 0
..................................................................................................................................................................AAGTTTTCTGTTCTGGGTGTTG................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................GTTTTCTGTTCTGGGTGTTGAG................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................................TAGGGCGACTATTTAGGAAAGGGCATG....................................................................................................................................................... 27 0 3 0.67 2 2 0 0 0 0 0
...................................................................................ATTTAGGAAAGGGCATGAGGC................................................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0
....................................................AATGAAGGGAAGACCCGGGAATAGGGC............................................................................................................................................................................ 27 0 3 0.67 2 0 2 0 0 0 0
.........................................................................................................................................................................................................................ATGTCTAAAAAACGGGCGAGCGA........... 23 0 3 0.33 1 1 0 0 0 0 0
......................................................TGAAGGGAAGACCCGGGAATAGG.............................................................................................................................................................................. 23 0 3 0.33 1 0 1 0 0 0 0
..............................................................................CGACTATTTAGGAAAGGGCATG....................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGCCTAAAAAACGGGCGAGCGAAT......... 24 1 3 0.33 1 0 1 0 0 0 0
............................................................................................................................AGAAAGAAGCAGGTACCAC............................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 1
...................................................................................ATTTAGGAGAGGGCATGAGGCAGT................................................................................................................................................ 24 1 3 0.33 1 1 0 0 0 0 0
...............TACAGGAGGCTACGATCAGCCTAGT................................................................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
................................................CGGTAATGAAGGGAAGACCCGGG.................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................GGGGGGTTGAGCACTGGATG........................................................ 20 3 3 0.33 1 0 0 1 0 0 0
....................................TAGTGGGAGCTACGGTAATGAAG................................................................................................................................................................................................ 23 0 3 0.33 1 1 0 0 0 0 0
...............................CAGCCTAGAGGGAGCTTCGG........................................................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 1 0 0
.......................................................GAAGGGAAGACCCGGGAATAGG.............................................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0
..............................................................................CGACTATTTAGGAAAGGGCATGAGGCA.................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0
.......................GCTACGATCAGCCTAGTGGGAGCTA........................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
...................................................................................ATTTAGGAAAGGGCATGAGGCA.................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AATGTCTAAAAAACGGGCGAGCG............ 23 0 3 0.33 1 1 0 0 0 0 0
...............................................................................GACTATTTAGGAAAGGGCATGAG..................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0
..........................................GAGCTACGGTAATGAAGGGAAGACCCGGG.................................................................................................................................................................................... 29 0 3 0.33 1 0 1 0 0 0 0
...............................................................................GACTATTTCGGAACGGGGAT........................................................................................................................................................ 20 3 3 0.33 1 0 0 1 0 0 0
..............................................................................CGACTATTTAGGAAAGGGCATGAGGC................................................................................................................................................... 26 0 3 0.33 1 0 0 1 0 0 0
....................GAGGCTACGATCAGCCTAGTGGGAGC............................................................................................................................................................................................................. 26 0 3 0.33 1 0 1 0 0 0 0
..............................................................................CGACTATTGAGGAAAGGGCATGA...................................................................................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0
.....................................................ATGAAGGGAAGACCCGGGAATA................................................................................................................................................................................ 22 0 3 0.33 1 1 0 0 0 0 0
..................................................................................TATTTAGGAAAGGGCATGAGGCAGTGG.............................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0
..................................................................................TGTTTAGGAAAGGGCATGAGGCAGT................................................................................................................................................ 25 1 3 0.33 1 0 1 0 0 0 0
.....................ATGCTACGATCAGCCTAGTGGGAGC............................................................................................................................................................................................................. 25 1 3 0.33 1 0 1 0 0 0 0
....................................................................................TTTAGGAAAGGGCATGAGGCA.................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AATGTCTACAAAACGGGCGAGCGAA.......... 25 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................GGTACCTCGACTGCTCGGGAAAGTGG.......................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................................AATGTCTACAAGCCATCGAGTCCAA................................... 25 0 3 0.33 1 1 0 0 0 0 0
...................................................................................ATTTAGGAAAGGGCATGAGGCAGC................................................................................................................................................ 24 1 3 0.33 1 0 1 0 0 0 0
.....................................AGTGGGAGCTTCGGGAATG................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0
.......................................................................................................CAGGCGCTATTAGCTACTGGA............................................................................................................................... 21 3 5 0.20 1 0 0 0 0 1 0
.................................................................................................................................................CTGCTCGCGGATGTGGAAAG...................................................................................... 20 3 11 0.18 2 0 0 2 0 0 0
..............GTACAGGAGGCTTCTATCAGT........................................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 1 0
.................................................................................................................................................................................GGTGTAGAGCACTGGATG........................................................ 18 2 7 0.14 1 0 0 0 1 0 0
..............................................................................................................................................................................TTGGGTGTAGAGCACTGGAT......................................................... 20 3 9 0.11 1 1 0 0 0 0 0
................................................................................................................................................................................GGGGGGTGAGCACTGGATG........................................................ 19 3 11 0.09 1 1 0 0 0 0 0
................................................................................................................................................................................GGGGGTAGAGCACTGGATGT....................................................... 20 3 15 0.07 1 1 0 0 0 0 0
................................................................................................................................................................................GGGGGTCGAGCACTGAA.......................................................... 17 2 15 0.07 1 0 0 0 0 1 0
................ACAGGAGGCTAAGATGTGC........................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
..............................TCAGCCTAGCGGGAGCTTCGG........................................................................................................................................................................................................ 21 2 20 0.05 1 0 0 0 1 0 0
...............................................................................................................................................................................TGGGTGTTGAGCATAGTA.......................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CCTTCCTCTTCTCTCATGTCCTCCGATGCTAGTCGGATCACCCTCGATGCCATTACTTCCCTTCTGGGCCCTTATCCCGCTGATAAATCCTTTCCCGTACTCCGTCACCGAGAATCGATGACCTTCTTTCATCGTCCATGGAGCTGACGAGCCCTTTCACCTTTCAAAAGACAAGACCCACAACTCGTGACTTACAGATGTTCGGTAGCTCAGGTTTTACAGATTTTTTGCCCGCTCGCTTATACCGCCTA
*******************************************************************(((.((.........((((((..(((..((((((((..(((.((((((.......)))))))))..))...)))))).......))).....)))))).......)).)))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V039
embryo
.........................................................................................................................................................................................................TCGGTAGCTCAGGTTTTACAGATTT......................... 25 0 3 2.67 8 7 1 0 0
.................................................................................................................................................GACGAGCCCTTTCACCTTTCAAAAGAC............................................................................... 27 0 3 2.33 7 4 3 0 0
..........................................................................................................................................................................ACAAGACCCACAACTCGTGACTTACAG...................................................... 27 0 1 2.00 2 2 0 0 0
.......................................................................................................................................................................................................GTTCGGTAGCTCAGGTTTTACAGATTT......................... 27 0 3 1.67 5 5 0 0 0
..........................................................................................................................................................................................................CGGTAGCTCAGGTTTTACAGATTT......................... 24 0 3 1.33 4 2 2 0 0
..............................................................TCTGGGCCCTTATCCCGCTGATAAAT................................................................................................................................................................... 26 0 3 1.33 4 3 1 0 0
.................................................................................................................................................GACGAGCCCTTTCACCTTTCAAAAGACA.............................................................................. 28 0 3 1.00 3 1 2 0 0
..............................................................................................................................................................................GACCCACAACTCGTGACTTACAGAT.................................................... 25 0 1 1.00 1 1 0 0 0
....................................................................................................................................CGTCCATGGTGCTGACGAGCCCTTT.............................................................................................. 25 1 1 1.00 1 0 1 0 0
..............................................................................................................................................................................GACCCACAACTCGTGACTTACAGATGTT................................................. 28 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................ACCCACAACTCGTGACTTACAGATGT.................................................. 26 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................CAAGACCCACAACTCGTGACTTACAGAT.................................................... 28 0 1 1.00 1 1 0 0 0
.......................................................................................................................GACCTTCTTTCATCGTCCATGGAGCT.......................................................................................................... 26 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................AAGACCCACAACTCGTGACTTACAGATGT.................................................. 29 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................AGACCCACAACTCGTGACTTACAGATGT.................................................. 28 0 1 1.00 1 1 0 0 0
..............................AGTCGGATCACCCTCGATGCCATTACT.................................................................................................................................................................................................. 27 0 3 1.00 3 3 0 0 0
..............................................................................................................................................................................GACCCACAACTCGTGACTTACAGATG................................................... 26 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................AAGACCCACAACTCGTGACTTACAGAT.................................................... 27 0 1 1.00 1 0 1 0 0
.................................CGGATCACCCTCGATGCCATTACTT................................................................................................................................................................................................. 25 0 3 0.67 2 2 0 0 0
.........................................................................................................................................................................................................TCGGTAGCTCAGGTTTTACAGATTTT........................ 26 0 3 0.67 2 2 0 0 0
......................................CACCCTCGATGCCATTACTTCCCTTCT.......................................................................................................................................................................................... 27 0 3 0.67 2 2 0 0 0
.........................................................................................................................................................................................................CCGGTAGCTCAGGTTTTACAGATTT......................... 25 1 3 0.67 2 0 2 0 0
..............................AGTCGGATCACCCTCGATGCCATTACTT................................................................................................................................................................................................. 28 0 3 0.67 2 2 0 0 0
.......CTTCTCTCATGTCCTCCGATGCTAGT.......................................................................................................................................................................................................................... 26 0 3 0.67 2 2 0 0 0
..............................................................................................................................................GCTGACGAGCCCTTTCACCTTTCAA.................................................................................... 25 0 3 0.33 1 1 0 0 0
...................................GATCACCCTCGATGCCATTACTTCCCT............................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0
.................................CGGATCACCCTCGATGCCATTACTTCCC.............................................................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0
............................................................CTTCTGGGCCCTTATCCCGCTGAT....................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0
..............................................................................................CCGCACTCCGTGACCAAGAATC....................................................................................................................................... 22 3 3 0.33 1 0 0 1 0
...........................................................................CCCGCTGATAAATCCTTTCCCGTACT...................................................................................................................................................... 26 0 3 0.33 1 0 1 0 0
...........................................................................................................................................GGAGCTGACGAGCCCTTTCACCTTT....................................................................................... 25 0 3 0.33 1 0 1 0 0
............................................................................................................................................GAGCTGACGAGCCCTTTCACCT......................................................................................... 22 0 3 0.33 1 1 0 0 0
............................................................................................................................................GAGCTGACGAGCCCTTTCACCTTT....................................................................................... 24 0 3 0.33 1 1 0 0 0
...........................................................................................................................................GGAGCTGACGAGCCCTTTCACCTTTCA..................................................................................... 27 0 3 0.33 1 1 0 0 0
...........................GCTAGTCGGATCACCCTCGATGCCATT..................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
....CCTCTTCTCTCATGTCCTCCGATGCTAGT.......................................................................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0
..............................................................TCTGGGCCCTTATCCCGCTGATAAATCCT................................................................................................................................................................ 29 0 3 0.33 1 0 1 0 0
........................................................................................CCTTTCCCGTACTCCGTCACCGAGAAT........................................................................................................................................ 27 0 3 0.33 1 1 0 0 0
.......................................................................................................................................................................................................GTTCGGTAGCTCAGGTTTTACAGATTG......................... 27 1 3 0.33 1 1 0 0 0
...........................................................................................................................................................................................................GGTAGCTCAGGTTTTACAGATTT......................... 23 0 3 0.33 1 1 0 0 0
.....................................................................................................................................................................................................................................GCCCGCTCGCTTATACCGCCT. 21 0 3 0.33 1 1 0 0 0
...................................................................................................................................................CGAGCCCTTTCACCTTTCAAAAGAC............................................................................... 25 0 3 0.33 1 1 0 0 0
..............................AGTCGGATCACCCTCGATGCCATTAC................................................................................................................................................................................................... 26 0 3 0.33 1 0 0 0 1
..........................................................................................................................................................................................................CGGTAGCTCAGGTTTTACAGACTT......................... 24 1 3 0.33 1 0 1 0 0
....................................................................................................TCCGTCACCGAGAATCGATGACCTTCTT........................................................................................................................... 28 0 3 0.33 1 0 1 0 0
....................................................................................................................................................GAGCCCTTTCACCTTTCAAAAGACA.............................................................................. 25 0 3 0.33 1 0 1 0 0
..................................................................................................................................................................................................................................TTTGCCCGCTCGCTTATACCGCCT. 24 0 3 0.33 1 1 0 0 0
.....................................................................................................................................GTCCATGGAGCTGACGAGCCCTTTCA............................................................................................ 26 0 3 0.33 1 1 0 0 0
..........................................................................................................................................TGGAGCTGACGAGCCCTTTCACCTT........................................................................................ 25 0 3 0.33 1 1 0 0 0
............................................CGATGCCATTACTTCCCTTCTGGGCCCT................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0
.................................................................................................................................................CACGAGCCCTTTCACCTTTCAAAAG................................................................................. 25 1 3 0.33 1 0 1 0 0
.......................................................................................................................................................................................................GTTCGGTAGCTCAGGTTTAACAGATTT......................... 27 1 3 0.33 1 1 0 0 0
.........................................................................................................................................................................................................TCGGTAGCTCAGCTTTTACAGATTT......................... 25 1 3 0.33 1 0 1 0 0
...........................GCTAGTCGGATCACCCTCGATGCCAT...................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
...........................................................................................................................................GGAGCTGACGAGCCCTTTCATTTTT....................................................................................... 25 2 3 0.33 1 0 1 0 0
...............................................................CTGGGCCCTTATCCCGCTGATAAA.................................................................................................................................................................... 24 0 3 0.33 1 0 1 0 0
..................................................................................................................................................ACGAGCCCTTTCACCTTTCAAAAGACA.............................................................................. 27 0 3 0.33 1 1 0 0 0
CCTTCCTCTTCTCTCATGTCCTCCG.................................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0
.................................................................................................................................................GACGAGCCCTTTCACCTTTCAAAAGA................................................................................ 26 0 3 0.33 1 1 0 0 0
...............................................................CTGGGCCCTTATCCCGCTGATAAATCCT................................................................................................................................................................ 28 0 3 0.33 1 1 0 0 0
..................................................................................................................................................ACGAGCCCTTTCACCTTTCAAAAGACAA............................................................................. 28 0 3 0.33 1 1 0 0 0
..................................................................................................................................................ACGAGCCCTTTCACCTTTCAAAAGAC............................................................................... 26 0 3 0.33 1 1 0 0 0
.................................CGGATCACCCTCGATGCCATTACTTCCCT............................................................................................................................................................................................. 29 0 3 0.33 1 1 0 0 0
........................................................................................................................................................................................................TTCGGTAGCTCAGGTTTTACAGATTT......................... 26 0 3 0.33 1 1 0 0 0
CCTTCCTCTTCTCTCATGTCCTCGG.................................................................................................................................................................................................................................. 25 1 3 0.33 1 0 1 0 0
...........................................................................................................................................GGAGCTGACGAGCCCTTTCACCTTTCAA.................................................................................... 28 0 3 0.33 1 1 0 0 0
..............................................................................................................................................GCTGACGAGCCCTTTCACCTTTCAAA................................................................................... 26 0 3 0.33 1 1 0 0 0
..............................................................TCTGGGCCCTTATCCCGCTGATAAA.................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0
.............................................................................................CCCGTACTCCGTCACCGAGAATCGAT.................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
..........................................................................................................................................................................................................CGGTAGCTCAGGTTTTACAGATTTT........................ 25 0 3 0.33 1 0 1 0 0
....................................ATCAGCGTTGATGCCATTA.................................................................................................................................................................................................... 19 3 13 0.15 2 2 0 0 0
...................................................................................................CTCCGTCACCGAGAATCGACGACCT............................................................................................................................... 25 1 20 0.05 1 1 0 0 0
......................................................................................................................................TCCAGCGAGGTGACGAGCC.................................................................................................. 19 3 20 0.05 1 0 0 1 0
..............CATGTTCTCGGATGCTGG........................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13099:114401-114651 - dan_1237 GGAAGGAGAAGAGAGTACAGGAGGCTAC-----GATCAGCCTAGTGGGAGCTACGGTAA-----TGAAGGGAAGACCCGGGAA--------TAGGGCGACTATTTAGGAAA---------------G-GGCATGAGGCAGTGGCTCTTAGCTACTGGA----------AGAAAGTAGCAGGTACCTCGACTGCTCGGGAAAGTGGAAAGTTTTCTGTTCTGGGTGTTGAGCACTGAATGTCTACAAGCCATCGAGTCCAAAATGTCT---AAAAAACGGGCGAGCGAATATGG---CGGAT--
droBip1 scf7180000395240:2445-2732 + GGGTTCAGACGCGAGGATAGAGGAC-ATCATAGGAATTATCCAGCCGGAAATGCTGTAGCAGAATTAAATGAAGTAATGGAAATGGAGGATGCAAGTGACTTTTCGGACCAT------GGGGATCCGGATATCGAAGCAGTGGCTCTCATTTGTTTGAATTACCGGAAGAAAGGGCATAGGTATCACGACTGTGCTGGGAAAAGCAAGGTTTTTTGTTTCGGGTGCGGAGCTCCTAATACCTATAAACCGTCTCGCGCAAACTGTTT---AAAAAACGGGCCGGTGAATGCGC---AAGAC--
droKik1 scf7180000302355:1579037-1579261 + GATCA----------------------------------CCTAGTGGAAGAT---------------------------------------GCGGAAGAATTTTCCGAGGGCGAATTAGAGGGAGATGAAATAGAGGCGTTGGCTCTAGTTTGTTGGAACTGTCGCAAAGAAGGTCACCGCTACCAGGACTGCGGAGGCAAGCGGAAAATATTCTGCTATGGTTGTGGTGCTCCTAATACTTATAAGCCATCTTGCGGGAAATGCCAACAAAAAAACTCCATGGCGAACACAC---AGCCT--
droFic1 scf7180000453926:19123-19260 - -------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCCGGAAGGAAGGACATCGGTACCATGACTGTGATGGAAAGAGGAAGATCTTCTGCTACGGCTGTGGTGCCCCAAATATTTACAAGCCCTCATGTGGTAGATGTTT---AAAAAACGCGAGAGGAGACATTC---AGCCT--
droEle1 scf7180000489819:513-671 + G----------------------------------------------------------------------------------------------------------------------------------------CCATGGCTCTAATTTGCTGGAACTGCCGCCAAGAGAGCCACAGGTACTACGACTGCGAGGGAAAACGCAAAATCTTTTGTTTTGGATGTGGTTCTCCAAATACATATAAACCTTCCTGCGTAAAATGTCA---AAAAAACGCAAAAATGAACACAC---AGCCT--
droRho1 scf7180000773056:556-766 - GAGCTG----------------------------------G---------------TAA-----AAGAAGAGGAACTCGATGA--------GCGGGTGATGTTTTCGGATGT--TGAGGAGGACGAGGAAGTTGGGGCTCTGGCTTTAATTTGCTGGAACTGTCAGAAAGAGGGCCATCGCCACCAAGACTGCCGTGATAAGAAAAGAATTTTCTGTTGGGGTTGTAGGGCCAAGAATATTGTAAAAACTTCCTGTACTCGTTGCCA---AAAAAACG-------------------------
droBia1 scf7180000302511:7940-8069 - GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAGGCCACCGTTATGTCGATTGTGGCGAAAAGAAGAAAATCTTTTGTTATGGTTGTGGTCTTCCGAATATTTATAAGCCCTCATGCTCTAAATGTCA---AAAAAACGGGATGACGAGCACAC---GGCCA--
droTak1 scf7180000413450:1549-1710 - G----------------------------------------------------------------------------------------------------------------------------------------CGGTGGCGCTCATATGCTGGAATTGTCGCAAGGAAGGCCATCGATACAAGCAATGTCAAATGAAGCGCAAAGTGTTTTGTTTTGGATGTGGCGCTCCAAATAATTACAGCCATACTTGTCCGAATTGTTT---AAAAAACGGGAAAGCGAACACTTTCAGCGGT--
droEug1 scf7180000407960:87-218 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGGCCATAGATGCCATGATTGTGAGACCAAGCGAAAAGTCTTTTGCTATGGCTGTGATCTCCCCAATACCTACAAACCATCACGCTCGAAATGTCA---AAAAAACGGCAAGGCGAGCATAC---GGCCAAC
droYak3 v2_chr2h_random_004:145909-146094 - GATCA----------------------------------------------------------------------------------------GGAA---------------------GGCGATTTAGAAATCGGAGCTATGGCACTAGTGTGTTGGAATTTCCACAAAGAAGGACACCGCTATCAGGATTGCGAAAGTAAGCGAAAGATTTTCTGCTACGGCTGTGGCACTCCAAATGTGTACAAACCCTCGTGTGGCAAGTGCCT---AAAAAACGGGAAAACGAGCACAC---ATATC--
dp5 Unknown_group_386:940-1117 - GGAAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATGGCTCTGATTTGCTGGAACTGCCGAAAGGAGGGGCATCGCTACCACGATTACGATAGCAGAAGGAAAATTTTTTGCTTTGGGTGCGGAGCACCTAATAAATATAAGCCGTCGTGTAGCAAATGCCA---AAAAAACGGCAAAGTGAACACCC---AGCCT--
droPer2 scaffold_134:65444-65613 + GGAAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATGGCACTGATTTGCTGGAACTGCCGAAAGAAGGGGCATCGCTACCACGATTGCGATAGCAGAAGGAAAATTTTTTGCTTTGGGTGCGGAGCACCTAATAAATATAAGCCGTCGTGTAGCAAATGCCA---AAAAAACCGCAAAGTGAACA-------------
droWil2 scf2_1100000002889:47-229 + GAATT----------------------------------------------------------------------------------------GG---------------------------GCGATGAAATAGGAGCAATAGCCTTGGTATGTTGGAATTGCCGACAAGAAGGTCACCGATACCACGACTGTAGCGCTAAACGAAAAATCTTTTGTTATGGATGTGGAGCAGTGAACACGTATAAGCCATCATGCAAAAAATGCCA---AAAAAACGGCAAGGAGAACACTGCAGCATCT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGAAGGAGAAGAGAGTACAGGAGGCTAC-----GATCAGCCTAGTGGGAGCTACGGTAA-----TGAAGGGAAGACCCGGGAA--------TAGGGCGACTATTTAGGAAA---------------G-GGCATGAGGCAGTGGCTCTTAGCTACTGGA----------AGAAAGTAGCAGGTACCTCGACTGCTCGGGAAAGTGGAAAGTTTTCTGTTCTGGGTGTTGAGCACTGAATGTCTACAAGCCATCGAGTCCAAAATGTCT---AAAAAACGGGCGAGCGAATATGG---CGGAT--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................AATGTCT---AAAAAACGGGCGAGCGA................2431.003210000
..............................................................................................................................................................................................................AAGTTTTCTGTTCTGGGTGTTG...........................................................................2211.001100000
................................................................................................................................................................................................................GTTTTCTGTTCTGGGTGTTGAG.........................................................................2211.001100000
...........................................................................................TAGGGCGACTATTTAGGAAA---------------G-GGCATG.........................................................................................................................................................................2730.672200000
.....................................................................................................ATTTAGGAAA---------------G-GGCATGAGGC.....................................................................................................................................................................2130.672200000
.........................................................AA-----TGAAGGGAAGACCCGGGAA--------TAGGGC..............................................................................................................................................................................................................2730.672020000
.....................................................................................................................................................................................................................................................................ATGTCT---AAAAAACGGGCGAGCGA................2330.331100000
................................................................TGAAGGGAAGACCCGGGAA--------TAGG................................................................................................................................................................................................................2330.331010000
................................................................................................CGACTATTTAGGAAA---------------G-GGCATG.........................................................................................................................................................................2230.331100000
...............TACAGGAGGCTAC-----GATCAGCCTAGT..................................................................................................................................................................................................................................................................2530.331010000
.....................................................CGGTAA-----TGAAGGGAAGACCCGGG..............................................................................................................................................................................................................................2330.331100000
.........................................TAGTGGGAGCTACGGTAA-----TGAAG..........................................................................................................................................................................................................................................2330.331100000
.................................................................GAAGGGAAGACCCGGGAA--------TAGG................................................................................................................................................................................................................2230.331100000
................................................................................................CGACTATTTAGGAAA---------------G-GGCATGAGGCA....................................................................................................................................................................2730.331100000
.......................GCTAC-----GATCAGCCTAGTGGGAGCTA..........................................................................................................................................................................................................................................................2530.331100000
.....................................................................................................ATTTAGGAAA---------------G-GGCATGAGGCA....................................................................................................................................................................2230.331100000
....................................................................................................................................................................................................................................................................AATGTCT---AAAAAACGGGCGAGCG.................2330.331100000
.................................................................................................GACTATTTAGGAAA---------------G-GGCATGAG.......................................................................................................................................................................2330.331100000
...............................................GAGCTACGGTAA-----TGAAGGGAAGACCCGGG..............................................................................................................................................................................................................................2930.331010000
................................................................................................CGACTATTTAGGAAA---------------G-GGCATGAGGC.....................................................................................................................................................................2630.331000010
....................GAGGCTAC-----GATCAGCCTAGTGGGAGC............................................................................................................................................................................................................................................................2630.331010000
..........................................................A-----TGAAGGGAAGACCCGGGAA--------TA..................................................................................................................................................................................................................2230.331100000
....................................................................................................TATTTAGGAAA---------------G-GGCATGAGGCAGTGG................................................................................................................................................................2730.331100000
......................................................................................................TTTAGGAAA---------------G-GGCATGAGGCA....................................................................................................................................................................2130.331100000
...................................................................................................................................................................................GGTACCTCGACTGCTCGGGAAAGTGG..................................................................................................2630.331100000
...........................................................................................................................................................................................................................................AATGTCTACAAGCCATCGAGTCCAA...........................................2530.331100000
.....................................................................................................ATTTAGGAAA---------------G-GGCATGAGGCAGC..................................................................................................................................................................2430.331010000
droBip1
GGGTTCAGACGCGAGGATAGAGGAC-ATCATAGGAATTATCCAGCCGGAAATGCTGTAGCAGAATTAAATGAAGTAATGGAAATGGAGGATGCAAGTGACTTTTCGGACCAT------GGGGATCCGGATATCGAAGCAGTGGCTCTCATTTGTTTGAATTACCGGAAGAAAGGGCATAGGTATCACGACTGTGCTGGGAAAAGCAAGGTTTTTTGTTTCGGGTGCGGAGCTCCTAATACCTATAAACCGTCTCGCGCAAACTGTTT---AAAAAACGGGCCGGTGAATGCGC---AAGAC--SizeHit CountTotal NormTotal
No Reads
droKik1
GATCA----------------------------------CCTAGTGGAAGAT---------------------------------------GCGGAAGAATTTTCCGAGGGCGAATTAGAGGGAGATGAAATAGAGGCGTTGGCTCTAGTTTGTTGGAACTGTCGCAAAGAAGGTCACCGCTACCAGGACTGCGGAGGCAAGCGGAAAATATTCTGCTATGGTTGTGGTGCTCCTAATACTTATAAGCCATCTTGCGGGAAATGCCAACAAAAAAACTCCATGGCGAACACAC---AGCCT--SizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCCGGAAGGAAGGACATCGGTACCATGACTGTGATGGAAAGAGGAAGATCTTCTGCTACGGCTGTGGTGCCCCAAATATTTACAAGCCCTCATGTGGTAGATGTTT---AAAAAACGCGAGAGGAGACATTC---AGCCT--SizeHit CountTotal NormTotal
No Reads
droEle1
G----------------------------------------------------------------------------------------------------------------------------------------CCATGGCTCTAATTTGCTGGAACTGCCGCCAAGAGAGCCACAGGTACTACGACTGCGAGGGAAAACGCAAAATCTTTTGTTTTGGATGTGGTTCTCCAAATACATATAAACCTTCCTGCGTAAAATGTCA---AAAAAACGCAAAAATGAACACAC---AGCCT--SizeHit CountTotal NormTotal
No Reads
droRho1
GAGCTG----------------------------------G---------------TAA-----AAGAAGAGGAACTCGATGA--------GCGGGTGATGTTTTCGGATGT--TGAGGAGGACGAGGAAGTTGGGGCTCTGGCTTTAATTTGCTGGAACTGTCAGAAAGAGGGCCATCGCCACCAAGACTGCCGTGATAAGAAAAGAATTTTCTGTTGGGGTTGTAGGGCCAAGAATATTGTAAAAACTTCCTGTACTCGTTGCCA---AAAAAACG-------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAAGGCCACCGTTATGTCGATTGTGGCGAAAAGAAGAAAATCTTTTGTTATGGTTGTGGTCTTCCGAATATTTATAAGCCCTCATGCTCTAAATGTCA---AAAAAACGGGATGACGAGCACAC---GGCCA--SizeHit CountTotal NormTotal
No Reads
droTak1
G----------------------------------------------------------------------------------------------------------------------------------------CGGTGGCGCTCATATGCTGGAATTGTCGCAAGGAAGGCCATCGATACAAGCAATGTCAAATGAAGCGCAAAGTGTTTTGTTTTGGATGTGGCGCTCCAAATAATTACAGCCATACTTGTCCGAATTGTTT---AAAAAACGGGAAAGCGAACACTTTCAGCGGT--SizeHit CountTotal NormTotal
No Reads
droEug1
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGGCCATAGATGCCATGATTGTGAGACCAAGCGAAAAGTCTTTTGCTATGGCTGTGATCTCCCCAATACCTACAAACCATCACGCTCGAAATGTCA---AAAAAACGGCAAGGCGAGCATAC---GGCCAACSizeHit CountTotal NormTotal
No Reads
droYak3
GATCA----------------------------------------------------------------------------------------GGAA---------------------GGCGATTTAGAAATCGGAGCTATGGCACTAGTGTGTTGGAATTTCCACAAAGAAGGACACCGCTATCAGGATTGCGAAAGTAAGCGAAAGATTTTCTGCTACGGCTGTGGCACTCCAAATGTGTACAAACCCTCGTGTGGCAAGTGCCT---AAAAAACGGGAAAACGAGCACAC---ATATC--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
dp5
GGAAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATGGCTCTGATTTGCTGGAACTGCCGAAAGGAGGGGCATCGCTACCACGATTACGATAGCAGAAGGAAAATTTTTTGCTTTGGGTGCGGAGCACCTAATAAATATAAGCCGTCGTGTAGCAAATGCCA---AAAAAACGGCAAAGTGAACACCC---AGCCT--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................TACCACGATTACGATAGCAGAAGG..................................................................................................24111.00110800100200
.......................................................................................................................................................TGCTGGAACTGCCGAAAGGAGG..................................................................................................................................2234.00120500000340
.....................................................................................................................................................................................TACCACGATTACGATAGCAGAAGGA.................................................................................................2513.0030100000200
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AAA..............................2323.0060400000020
.....................................................................................................................................................................................TACCACGATTACGATAGCAGAAG...................................................................................................2313.0030100000200
............................................................................................................................................................GAACTGCCGAAAGGAGGGGC...............................................................................................................................2032.0060000015000
.......................................................................................................................................................TGCTGGAACTGCCGAAAGGAG...................................................................................................................................2132.0060100000140
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AA...............................2222.0040400000000
.......................................................................................................................................................TGCTGGAACTGCCGAAAGGAGGGGC...............................................................................................................................2532.0060100000320
...AG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATT.................................................................................................................................................................2231.6750000000050
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AAAA.............................2421.5030100000020
.....................................................................................................................................................TTTGCTGGAACTGCCGAAAGGAGG..................................................................................................................................2421.5030000000300
................................................................................................................................................................TGCCGAAAGGAGGGGCATCGCTAC.......................................................................................................................2441.2550100000400
...............................................................................................................................................................................................................................................AATATAAGCCGTCGTGTAGC............................................2051.2060000000060
.....................................................................................................................................................................................TACCACGATTACGATAGCAGAAGGAAAA..............................................................................................2811.0010100000000
.........................................................................................................................................................CTGGAACTGCCGAAAGGAGGG.................................................................................................................................2131.0030000001020
......................................................................................................................................................................................ACCACGATTACGATAGCAGAAGG..................................................................................................2311.0010100000000
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AAAAA............................2521.0020200000000
.........................................................................................................................................................CTGGAACTGCCGAAAGGAGG..................................................................................................................................2031.0030000000030
...................................................................................................................................TGGCAGCCATGGCTCTGATTTGCTG...................................................................................................................................................2511.0010100000000
..........................................................................................................................................................TGGAACTGCCGAAAGGAGGGGCAT.............................................................................................................................2421.0020000000200
......................................................................................................................................................................................ACCACGATTACGATAGCAGAAGGA.................................................................................................2411.0010100000000
........................................................................................................................................................GCTGGAACTGCCGAAAGGAGG..................................................................................................................................2131.0030100000020
...........................................................................................................................................................................................GATTACGATAGCAGAAGGA.................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................TAAATATAAGCCGTCGTGTAG.............................................2150.8040200000020
...............................................................................................................................................................................................................................................AATATAAGCCGTCGTGTAGCA...........................................2150.8040000000040
......................................................................................................................................................TTGCTGGAACTGCCGAAAGGAGGGG................................................................................................................................2530.6720200000000
......................................................................................................................................................TTGCTGGAACTGCCGAAAGGAGG..................................................................................................................................2330.6720000000020
......................................................................................................................................................TTGCTGGAACTGCCGAAAG......................................................................................................................................1930.6720000010010
.......................................................................................................................................................TGCTGGAACTGCCGAAAGGAGGGG................................................................................................................................2430.6720200000000
.......................................................................................................................................................TGCTGGAACTGCCGAAAGGAGGG.................................................................................................................................2330.6720100000100
......................................................................................................................................................TTGCTGGAACTGCCGAAAGGAG...................................................................................................................................2230.6720000000020
......................................................................................................................................................TTGCTGGAACTGCCGAAAGG.....................................................................................................................................2030.6720100001000
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAGCACC.....................................................................2450.6030300000000
..............................................................................................................................................................................................................................................AAATATAAGCCGTCGTGTAG.............................................2050.6030000000030
...AG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCC....................................................................................................................................................................1950.6030300000000
......................................................................................................................................................................................................................................CACCTAATAAATATAAGCCGTCGTG................................................2550.6030000000300
..........................................................................................................................................................................................................................................TAATAAATATAAGCCGTCGTG................................................2150.6030200001000
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AAAAC............................2520.5010100000000
..................................................................................................................................................TGATTTGCTGGAACTGCCGAAAGGAGT..................................................................................................................................2720.5010100000000
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCC.....................................1920.5010100000000
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AAAAAA...........................2620.5010100000000
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---AAAAAAC..........................2720.5010100000000
.......................................................................................................................................................................................................................................................CCGTCGTGTAGCAAATGCCA---A................................2120.5010100000000
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAGCAC......................................................................2350.4020200000000
............................................................................................................................................................................................................................................ATAAATATAAGCCGTCGTGTA..............................................2150.4020000000020
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAG.........................................................................2050.4020200000000
...............................................................................................................................................................................................................................TGCGGAGCACCTAATAAATATAAGCCG.....................................................2750.4020000000200
...................................................................................................................................................................................................................TTTTGCTTTGGGTGCGGAGCACCTAA..................................................................2650.4020200000000
..........................................................................................................................................................................................................AGGAAAATTTTTTGCTTTGGGTGC.............................................................................2450.4020000000200
....................................................................................................................................................................................................................TTTGCTTTGGGTGCGGAGC........................................................................1950.4020100010000
.............................................................................................................................................................................................................................................TAAATATAAGCCGTCGTGTAGCAAAT........................................2630.3310100000000
.................................................................................................................................................................................................................................................TATAAGCCGTCGTGTAGCAAA.........................................2130.3310000000010
............................................................................................................................................................GAACTGCCGAAAGGAGGGG................................................................................................................................1930.3310000001000
........................................................................................................................................................GCTGGAACTGCCGAAAGGAG...................................................................................................................................2030.3310000001000
........................................................................................................................................................GCTGGAACTGCCGAAAGGAGGG.................................................................................................................................2230.3310100000000
....G---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATA.................................................................................................................................................................2130.3310000000010
............................................................................................................................................................GAACTGCCGAAAGGAGGG.................................................................................................................................1830.3310100000000
.......................................................................................................................................................TGCTGGAACTGCCGAAAGGA....................................................................................................................................2030.3310100000000
.........................................................................................................................................................CTGGAACTGCCGAAAGGAG...................................................................................................................................1930.3310000000010
......................................................................................................................................................TTGCTGGAACTGCCGAAAGGA....................................................................................................................................2130.3310000001000
...AG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATG.................................................................................................................................................................2230.3310100000000
..........................................................................................................................................................TGGAACTGCCGAAAGGAGGGG................................................................................................................................2130.3310100000000
.......................................................................................................................................................TGCTGGAACTGCCGAAAGA.....................................................................................................................................1930.3310100000000
..AAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCA...................................................................................................................................................................2130.3310000000010
..................................................................................................................................................................................................................................................ATAAGCCGTCGTGTAGCAAAT........................................2130.3310000000010
.............................................................................................................................................................AACTGCCGAAAGGAGGGGC...............................................................................................................................1930.3310100000000
.............................................................................................................................ACGAGGTGGCAGCCATGGC...............................................................................................................................................................1930.3310000001000
......................................................................................................................................................TTGCTGGAACTGCCGAAAGGAGGGGA...............................................................................................................................2630.3310100000000
..........................................................................................................................................................TGGAACTGCCGAAAGGAGGG.................................................................................................................................2030.3310000001000
....G---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATG.................................................................................................................................................................2130.3310000000010
................................................................................................................................................................TGCCGAAAGGAGGGGCATCT...........................................................................................................................2040.2510100000000
......................................................................................................................................................................................................................................................................TGCCA---AAAAAACGGCAAAGTGAACAC............2640.2510100000000
................................................................................................................................................................TGCCGAAAGGAGGGGCATCGCTAAA......................................................................................................................2540.2510100000000
................................................................................................................................................................TGCCGAAAGGAGGGGCATCGCTACC......................................................................................................................2540.2510100000000
....................................................................................................................................................................................................................TTTGCTTTGGGTGCGGAGA........................................................................1950.2010100000000
................................................................................................................................................................................................................................................ATATAAGCCGTCGTGTAGC............................................1950.2010000000010
..............................................................................................................................................................................................................AAATTTTTTGCTTTGGGTGCG............................................................................2150.2010100000000
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAGCACCTA...................................................................2650.2010100000000
...............................................................................................................................................................................................................................TGCGGAGCACCTAATAAATATA..........................................................2250.2010100000000
...................................................................................................................................................................................................................TTTTGCTTTGGGTGCGGAG.........................................................................1950.2010000001000
...................................................................................................................................................................................................................TTTTGCTTTGGGTGCGGAGCACCTAAA.................................................................2750.2010100000000
...............................................................................................................................................................................................................................................AATATAAGCCGTCGTGTAG.............................................1950.2010000000010
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAGCACCT....................................................................2550.2010100000000
...............................................................................................................................................................................................................AATTTTTTGCTTTGGGTGC.............................................................................1950.2010100000000
................................................................................................................................................................................................................................GCGGAGCACCTAATAAATATAAG........................................................2350.2010100000000
.........................................................................................................................................................................................................................................CTAATAAATATAAGCCGTCG..................................................2050.2010000000010
.................................................................................................................................................................................................................................CGGAGCACCTAATAAATATA..........................................................2050.2010000001000
.................................................................................................................................................................................................................................................TATAAGCCGTCGTGTAGC............................................1850.2010000000100
.GAAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAC......................................................................................................................................................................1950.2010100000000
..........................................................................................................................................................................................................................................TAATAAATATAAGCCGTCGTGTAGCA...........................................2650.2010000000010
....................................................................................................................................................................................................................TTTGCTTTGGGTGCGGAGCACCTAA..................................................................2550.2010100000000
...............................................................................................................................................................................................................................TGCGGAGCACCTAATAAATATAAGA.......................................................2550.2010100000000
..................................................................................................................................................................................................................................................ATAAGCCGTCGTGTAGCAA..........................................1950.2010100000000
..............................................................................................................................................................................................................AAATTTTTTGCTTTGGGTGCGG...........................................................................2250.2010100000000
............................................................................................................................................................................................................................................ATAAATATAAGCCGTCGTGT...............................................2050.2010000001000
droPer2
GGAAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCATGGCACTGATTTGCTGGAACTGCCGAAAGAAGGGGCATCGCTACCACGATTGCGATAGCAGAAGGAAAATTTTTTGCTTTGGGTGCGGAGCACCTAATAAATATAAGCCGTCGTGTAGCAAATGCCA---AAAAAACCGCAAAGTGAACA-------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................TTTGCTGGAACTGCCGAAAGAAGGG.................................................................................................................................2511.001010000
...................................................................................................................................................GATTTGCTGGAACTGCCGAA........................................................................................................................................2021.002000002
......................................................................................................................................................................................ACCACGATTGCGATAGCAGAA....................................................................................................2111.001010000
.....................................................................................................................................................TTTGCTGGAACTGCCGAAAG......................................................................................................................................2020.501010000
................................................................................................................................................ACTGATTTGCTGGAACTGCC...........................................................................................................................................2020.501010000
...................................................................................................................................................GATTTGCTGGAACTGCCGA.........................................................................................................................................1920.501010000
....................................................................................................................................................ATTTGCTGGAACTGCCGAAAG......................................................................................................................................2120.501000001
......................................................................................................................................................TTGCTGGAACTGCCGAAAG......................................................................................................................................1920.501000001
..................................................................................................................................................TGATTTGCTGGAACTGCCG..........................................................................................................................................1920.501000001
.............................................................................................................................................GGCACTGATTTGCTGGAACT..............................................................................................................................................2030.331000001
............................................................................................................................................TGGCACTGATTTGCTGGAAC...............................................................................................................................................2030.331010000
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAG.........................................................................2090.222010001
...AG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGCCT...................................................................................................................................................................2070.141000001
.GAAG---------------------------------------------------------------------------------------------------------------------AGGACGAGGTGGCAGC.....................................................................................................................................................................2070.141000001
...................................................................................................................................................................................................................TTTTGCTTTGGGTGCGGAG.........................................................................1990.111000001
..................................................................................................................................................................................................................TTTTTGCTTTGGGTGCGGAGC........................................................................2190.111010000
....................................................................................................................................................................................................................TTTGCTTTGGGTGCGGAG.........................................................................1890.111010000
.........................................................................................................................................................................................................AAGGAAAATTTTTTGCTTTGGGTGCGG...........................................................................2790.111010000
....................................................................................................................................................................................CTACCACGATTGCGATAGCA.......................................................................................................2090.111000001
................................................................................................................................................................................................................ATTTTTTGCTTTGGGTGCG............................................................................1990.111010000
.................................................................................................................................................................................................................TTTTTTGCTTTGGGTGCGGA..........................................................................20100.101000001
....................................................................................................................................................................................................................TTTGCTTTGGGTGCGGAGT........................................................................19100.101010000
droWil2
GAATT----------------------------------------------------------------------------------------GG---------------------------GCGATGAAATAGGAGCAATAGCCTTGGTATGTTGGAATTGCCGACAAGAAGGTCACCGATACCACGACTGTAGCGCTAAACGAAAAATCTTTTGTTATGGATGTGGAGCAGTGAACACGTATAAGCCATCATGCAAAAAATGCCA---AAAAAACGGCAAGGAGAACACTGCAGCATCT--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................CGATGAAATAGGAGCAATAGCCT.............................................................................................................................................................2330.67202000
....................................................................................................................................AGGAGCAATAGCCTTGGTATGTTG...................................................................................................................................................2430.33101000
.................................................................................................................................................................................................................TCTTTTGTTATGGATGTGGAGCAG......................................................................2430.33101000
.............................................................................................................................................AGCCTTGGTATGTTGGAATTGC............................................................................................................................................2230.33101000
..................................................................................................................................................................................................................CTTTTGTTATGGATGTGGAGC........................................................................2130.33101000
.................................................................................................................................AATAGGAGCAATAGCCTTGGTAT.......................................................................................................................................................2330.33101000
...................................................................................................................................................................................................................................GAGCAGTGAACACGTATAAGCCATCA..................................................2630.33101000
...........................................................................................................................................................................................................................................AACACGTATAAGCCATCATGCAAA............................................2430.33101000
.............................................................................................................................................................................GTCACCGATACCACGACTGTAGCGC.........................................................................................................2530.33110000
...........................................................................................................................................ATAGCCTTGGTATGTTGGAATTGCCGA.........................................................................................................................................2730.33101000
.....................................................................................................................................................................................................................TTGTTATGGATGTGGAGCAGTGAACACG..............................................................2830.33101000
.............................................................................................................................................................................GTCACCGATACCACGACTGTAGC...........................................................................................................2330.33101000

Generated: 05/18/2015 at 12:58 AM