ID:

dan_1235

 Coordinate:

scaffold_13089:621018-621168 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF19006-cds]; exon [dana_GLEANR_20542:26]; intron [Dana\GF19006-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
Helitron-2_DVirRCHelitron+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGATCGGTCAGCTATATACGATCCGATATATATAACATATAATAGTAAAAGCTGCTACCTAACTGCAAGGGTATATAAACATCGGCGCCGCCGAAGTTAGCTTTACTTTCTTGTTTTAATAACAAATTGTGGAATACAAAAGGGGATAATTGAAAATTTTATGTTTGAAAATGATTAATTAATTTTTATAATAAATTTAGATCAAAACCGTTTTAACAAAAAACTGAAAGACACAGATGCAGTTGAAAGG
**************************************************(((((.(((((........))))).....((.(((((...))))).)))))))...((((..(((((((.(((....))))))))))..))))....(((((((..(((((.......)))))..)))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 M058
embryo
 V105
male body		 V039
embryo
 M044
female body
........................................................................................................................................................................................................................................CACAGATGCAGTTGAAAGG 19 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................................................................................................ACAGATGCAGTTGAAAGG 18 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAACTGAAAGACACAGATGCA......... 21 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................................................AGACACAGGTGCAGTTGAAAGG 22 1 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................................................................................ACACAGATGCAGTTGAAAGG 20 0 1 1.00 1 0 0 1 0 0
.................................................................................................................................................................................................................................TGATAGACACAGATGCAGTTGAAAG. 25 1 1 1.00 1 0 1 0 0 0
........................................................................................................................................ACAAAAGTGGATAATTGAAAATTT........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................ACTGAAAGACACAGATGCAGTTGAAA.. 26 0 1 1.00 1 0 0 0 0 1
..................................................................................................................................................................................................................................GAAAGACACAGATGCAGTTGAAA.. 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................ATCAAAACCGTTTTAACAAA.............................. 20 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................................GAAAGACACAGATGCAGTTGA.... 21 0 1 1.00 1 0 0 0 1 0
.........................................................................................................................................................................................................................CCAAAAACTGAAGGACACA............... 19 2 7 0.14 1 0 1 0 0 0
............................................AGTAAAAGCTGCAACCCCAC........................................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0
...........................................................................................................................................................................................................................AAAAACTGGAAGGCACAG.............. 18 2 12 0.08 1 0 1 0 0 0
.........CAGCTATATACGATCCGATAC............................................................................................................................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................................................AACAAAACACCGAAAGACA................. 19 2 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................TAAAAGACACCGCTGCAGT....... 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TCCTAGCCAGTCGATATATGCTAGGCTATATATATTGTATATTATCATTTTCGACGATGGATTGACGTTCCCATATATTTGTAGCCGCGGCGGCTTCAATCGAAATGAAAGAACAAAATTATTGTTTAACACCTTATGTTTTCCCCTATTAACTTTTAAAATACAAACTTTTACTAATTAATTAAAAATATTATTTAAATCTAGTTTTGGCAAAATTGTTTTTTGACTTTCTGTGTCTACGTCAACTTTCC
**************************************************(((((.(((((........))))).....((.(((((...))))).)))))))...((((..(((((((.(((....))))))))))..))))....(((((((..(((((.......)))))..)))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
..............................................................................................................................................................................................TTATTCAAACCTAGTTTTG.......................................... 19 2 11 0.09 1 0 1
................................................................................................................................................................ATACAAAGATCTACTAATTAA...................................................................... 21 3 13 0.08 1 1 0
...................................................CGACGATGGATTGACGTTCCCATATA.............................................................................................................................................................................. 26 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13089:620968-621218 + dan_1235 AGGATCG-GTCAGCT----AT----------ATACGAT----CCGATATATATAACATATAAT--AGTAAAAGCTGCTACC-------------------------TAACTGCAAGGGTATATAAACATCGGCGCC-GCCGAAGTTAGCTTTACTTTCTTGTTTTAAT-----------------------------------------------------------------------------AACAAATTGT-------------------------------------------------------------------------------------------------------------G--------GAATACAAAAGGGGATAATTGAAAATTTTATGT--------------TTGAAAATGATTAATTAATTTTTATAATAAATTT--------------------------------------------------------------------------------------------------------------------------------AGATCAAAACCGTTTTAACAAAAAACTGAAAGACACAGATGCAGTTGAAAGG
droBip1 scf7180000393612:590-827 - AGGATCG-GCCAACT----AT----------ATCCGATGTTTGCG---------------------ATATATATCCGTTTT-------------------------TAACTGCAAGGGTATATCAACTTCGGCTCCGACCGAAGTTAGCTTTCCTTTCTTGTTAAGCCAA--------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------T--A--------AAATG-------------------------------------------------GTGTAGT-----TCTGTGAA---------------------------------------TTTCTGATA----AGT----AAAATAATTTTTTAAATTTT-TAAAAATGAATTAAATGT-ATTTCT-ATAATATTT--AATAATTTTA-------TACAT------------AAT----------AAAAAACAAAAATTTATAAGAAA
droKik1 scf7180000302610:529187-529417 - TGTGACT-GTTTTCA----GC----------ATTTAA------------------ATCTATAA--TATAAACATCTAAACC-------------------------AATCTGCAAGGGTATTCAAACTTCGGCGT--GCCGAAGTTAGC-TTCCTTTCTTGTTTAAATTAGTTATATATTGTAAATACAAATTTATATTTAAAATATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG---AAA----AAAATTGG------------------------------------AAAGTGTTTATTACAGTTTATCCTAGAAAAA----------------------CTCTAGG--------AA-------------------------------------------------------------------------------------------------------TTTCCTGGAAAAGCATAGGAATTTTAAAGG
droFic1 scf7180000449584:6070-6272 + TGTATTCTGTTCGAA----AT----------A---------------------------------------------------------------------TTTGATGACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGC-TTCCTTTCTTGTTTTATATAATTCAAGACTG-------------------------------------------------------------------------------------------------------------------GTTAAAAAACCTGATACTCAAAAAATCCTTGTTGGAGCAGTAGATTAAGTTTTATTGTTAGTTTTAAGGATAGATGAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGATTGA-ATATATGC---AGCCAAA
droEle1 scf7180000491214:2033096-2033323 - CGCAAGT---AAATTATA-AT----------T-TTAATGTTTTC---------------------------------------AAAAATGTTTAATT-CT-TGCAATAGCTGCAAGGGTATATGAACTTCGGCTT--GCCGAAGTTTGC-TTTCTTTCTTGTTTTTA-----------------------------------------------------------------------------------------ATGATAATCGTTT--------------AT----------------------------------------------------------------------------A--A---------------AAAAGTCTAAAAAAATATTTTAAACT--------------TCTTTGATAACCTATATAAATTTATTTTGAAATT----------------------------------------------------------------------TG-AACAA---------ATTTTGTCGCTGA-----------AA---------------AAACCG--------------AAGCAC-----------------TGAAATATA
droRho1 scf7180000780082:209224-209459 + AGAATGC-ATCATAT--GAAT----------AACCGAT------------------------------------CCGGTTTTGGAGAAT--ATAATTTACA-GAATATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGC-TTTCTTTCTTGTTTTTA-----------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------A--GAAACTTAAAAACAGAATTGATATGAAAATAGTGTTCCAATAAGGACTTAAACAAATTTTATATT---------------------------------------------------------------------------------------------------------------------------------GTAT--ATATT-TTTAATCGAAGCAGTCGGAAATCGCACAGGAAGAGGAC------------------CAAAAAGA
droBia1 scf7180000301299:28473-28701 - AGAATTT-CGAAT------TC----------AATTTA-------------------ATAA--AATT--ATT------------------GATT---A-TT-TTTTATAACTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTAAC-TTCCTTTCTTGTTAATAT-----------------------------------------------------------------------------GTAACATTTT-------------------------------------------------------------------------------------------------------------C--------GATGACGAAAGAAAA---------------------------------------------------------------------------------------------------------------------------ATCTATTTAAATTTTCTATTTACGAATTGAATGACATCACCGATTTTATTTACAAT---------------AAACTAAGAC-------ACTATAAGCTTAAAAAAACATTTAAAATCGGAAGT
droTak1 scf7180000414050:352271-352455 - GATTTGT---TAATT----------------------------------------------------------------------------------AATAGGAATGATCTGCAAGGGTATATAAGCTTCGGCTG--GCCGAACCTAGC-TTCCTTTCTTGTTTTATC-----------------------------------------------------------------------------AAAAATTAAT-------------------------------------------------------------------------------------------------------------A--------CCAA---ATAAATATG--------------------------------------GAAAAACGTAAATTTTTTAT---------------------------------------TTATTAATA----AATTATT------------TAAATTTT-AATAAAT----------------------AT------------------------AATTAATAAC--TTTAAATAAAATAC----------------------TAAA
droEug1 scf7180000408984:430600-430679 - ATTTTTC-TATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTT---------------------------------------------------------------AATTTTA---------------------------------------------------------------------------TAGATCAAAACCGCTTTAACAAAAAACTTAAAGATACAGATGCTGTTGAGAGA
dm3 chr2L:22658985-22659089 + TTTATTT-TTATT----------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAT-----------------------------------------------------------------------------AAATAATTTA-------------------------------------------------------------------------------------------------------------A--------TAAAAAAAAGGGAGAGAAACGATTGTTTTAATT--------------ATTATTATTATTGATTATTATTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTTAACCCAAA
droSim2 4:580384-580455 + TGTTTAA-ATATA-----------------------------------------------TTT--TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAAACCGCTTTAACAAAAAACTCAAGGATACTGAAGCTGTTGAGAGA
droSec2 scaffold_30:483934-484010 + ATTCCCT-GTTTAAATAT-A-----------------------------------------TT--TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAAACCGCTTTAACAAAAAACTCAAGGATACTGAAGCTGTTGAGAGA
droYak3 3L:7660973-7661057 - GGACAAC-TAATTTTACT-GC----------TATTGA---------------------AA--AAAA--ACT------------------GATT---A-TT-TTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------AAAAAAAAT--------------------------------------------------------------------------------------------------------------------------------GGGAAAAAACAATTTTATAAAAAAT-----------------------CGGA
droEre2 scaffold_4784:23535384-23535469 + GAAATAC-CATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGG---GTA----AAAATTGAAAATCATCTAT--------------TTGAAAATATTTAATT---------------------------------------------------------------TATTACT---------------------------------------------------------------------------TAGCCCGGGTCAGTTTGATCAAA----------------------------AA
dp5 Unknown_singleton_586:243-324 + TAGTTTT-GTTTG------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTGACTT--------------------------------------------------------------------------------------TTA--------------------------------------------------------------------------------------------------------T--G--------GAATCAGAAAGTGGAAAAATGGAATTAAAATAT--------------TTGAAAACT---------------------------------------------------------------------------------------------------------------------------------ATGT--ATTTA--------------------------------------------------------------TTT
droPer2 scaffold_42:572071-572218 + GGAAATA-ATTAT---------------------------------------------------------------------------------------------TAATTGTAAGTGCATAATTG--------TT-GCTGAAAATGA-----------------------------------------------------------TTATATATATATTTGTATTTTAATTATTGTTGTTTTGCCGTTTTCTATTT--------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAAATCGTTTCAATAAGAAACTTAAAGACACAGATGCCGTAGAACGA
droWil2 scf2_1100000004521:11143203-11143436 - GTGATAA-ATTGAGT----TGCAGAAAACAAATTTTG------------------AACATGTA--AAATTATTA--TTAC-----------------------CAAGGACTGCAAGGGTATATAAACTTCGGCATA-GCCGATGTTAGC-TTCTT-TGATATTTATATTA----------------------------------------------------------------------------AGAAAAGAT-------------TTCATGAAATTTTTAATAATTTAGTCTTGTAGAAGTTTTTTGAACTGAAAATAAGTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCAACAACGTCTTATATTAGAACTGAA-----TATTTATAATTGTAATG
droVir3 scaffold_12963:9975482-9975709 + CAAGCTC-GTCATTTACT-AT----------TTCCCCTGA---------------G----CAA--TATAAGCAT----TAT---G------------AAAAGGTTGGGTCTGCAAGGGTATTAGATCTTCGGCGT--GCCGAAGATTGCCTTTCTTTCTCGTTAATGTTAATTTTATAT----------------------------------------------------------------------------------------------------------------------------------GAA------------------------------------------------------------------CGGAA----ACATTCAAAT----------------------------------------------ACAGGTTG-----------GATAAAAATGACAAAAATGTTTTTTTATGATTAAATATTATATT------------T-----------------------------------------AT--AT-----T----------TGTTTA-------------------------ATAGCATCTTAAATATAAATT
droMoj3 scaffold_6680:15537297-15537407 - TTTATTT-TTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAATTTAA--------------------------------------------------------------------------------------------------------A--T---------------AAAAGACAAAAATAATAATAATAAGT--------------ACAAAAATAAAAAACTAATTATTATATTAAATTT--------------------------------------------------------------------------------------------------------------------------------AAAAGTAAG-----------------------------TTTTTTTAAATAAA
droGri2 scaffold_15203:5270581-5270686 - GCAATAT-ACAAA-T----AC----------AAATAA------------------AACATACA--AATACAGATTAACTCC-------------------------GTTCTAGAAGGGTATATAATCTTCGGCGT--GCCTAAGATAAACCTTGCTTCTTGCTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGGATCG-GTCAGCT----AT----------ATACGAT----CCGATATATATAACATATAAT--AGTAAAAGCTGCTACC-------------------------TAACTGCAAGGGTATATAAACATCGGCGCC-GCCGAAGTTAGCTTTACTTTCTTGTTTTAAT-----------------------------------------------------------------------------AACAAATTGT-------------------------------------------------------------------------------------------------------------G--------GAATACAAAAGGGGATAATTGAAAATTTTATGT--------------TTGAAAATGATTAATTAATTTTTATAATAAATTT--------------------------------------------------------------------------------------------------------------------------------AGATCAAAACCGTTTTAACAAAAAACTGAAAGACACAGATGCAGTTGAAAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGATGCAGTTGAAAGG1912.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCAGTTGAAAGG1811.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAAGACACAGATGCA.........2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGATGCAGTTGAAAGG2011.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAAGACACAGATGCAGTTGAAA..2611.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACACAGATGCAGTTGAAA..2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAACCGTTTTAACAAA..............................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACACAGATGCAGTTGA....2111.001001000
..........CAGCT----AT----------ATACGAT----CCGATAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
AGGATCG-GCCAACT----AT----------ATCCGATGTTTGCG---------------------ATATATATCCGTTTT-------------------------TAACTGCAAGGGTATATCAACTTCGGCTCCGACCGAAGTTAGCTTTCCTTTCTTGTTAAGCCAA--------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------T--A--------AAATG-------------------------------------------------GTGTAGT-----TCTGTGAA---------------------------------------TTTCTGATA----AGT----AAAATAATTTTTTAAATTTT-TAAAAATGAATTAAATGT-ATTTCT-ATAATATTT--AATAATTTTA-------TACAT------------AAT----------AAAAAACAAAAATTTATAAGAAASizeHit CountTotal NormTotal
No Reads
droKik1
TGTGACT-GTTTTCA----GC----------ATTTAA------------------ATCTATAA--TATAAACATCTAAACC-------------------------AATCTGCAAGGGTATTCAAACTTCGGCGT--GCCGAAGTTAGC-TTCCTTTCTTGTTTAAATTAGTTATATATTGTAAATACAAATTTATATTTAAAATATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAG---AAA----AAAATTGG------------------------------------AAAGTGTTTATTACAGTTTATCCTAGAAAAA----------------------CTCTAGG--------AA-------------------------------------------------------------------------------------------------------TTTCCTGGAAAAGCATAGGAATTTTAAAGGSizeHit CountTotal NormTotal
No Reads
droFic1
TGTATTCTGTTCGAA----AT----------A---------------------------------------------------------------------TTTGATGACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGC-TTCCTTTCTTGTTTTATATAATTCAAGACTG-------------------------------------------------------------------------------------------------------------------GTTAAAAAACCTGATACTCAAAAAATCCTTGTTGGAGCAGTAGATTAAGTTTTATTGTTAGTTTTAAGGATAGATGAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGATTGA-ATATATGC---AGCCAAASizeHit CountTotal NormTotal
No Reads
droEle1
CGCAAGT---AAATTATA-AT----------T-TTAATGTTTTC---------------------------------------AAAAATGTTTAATT-CT-TGCAATAGCTGCAAGGGTATATGAACTTCGGCTT--GCCGAAGTTTGC-TTTCTTTCTTGTTTTTA-----------------------------------------------------------------------------------------ATGATAATCGTTT--------------AT----------------------------------------------------------------------------A--A---------------AAAAGTCTAAAAAAATATTTTAAACT--------------TCTTTGATAACCTATATAAATTTATTTTGAAATT----------------------------------------------------------------------TG-AACAA---------ATTTTGTCGCTGA-----------AA---------------AAACCG--------------AAGCAC-----------------TGAAATATASizeHit CountTotal NormTotal
No Reads
droRho1
AGAATGC-ATCATAT--GAAT----------AACCGAT------------------------------------CCGGTTTTGGAGAAT--ATAATTTACA-GAATATTCTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGC-TTTCTTTCTTGTTTTTA-----------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------A--GAAACTTAAAAACAGAATTGATATGAAAATAGTGTTCCAATAAGGACTTAAACAAATTTTATATT---------------------------------------------------------------------------------------------------------------------------------GTAT--ATATT-TTTAATCGAAGCAGTCGGAAATCGCACAGGAAGAGGAC------------------CAAAAAGASizeHit CountTotal NormTotal
No Reads
droBia1
AGAATTT-CGAAT------TC----------AATTTA-------------------ATAA--AATT--ATT------------------GATT---A-TT-TTTTATAACTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTTAAC-TTCCTTTCTTGTTAATAT-----------------------------------------------------------------------------GTAACATTTT-------------------------------------------------------------------------------------------------------------C--------GATGACGAAAGAAAA---------------------------------------------------------------------------------------------------------------------------ATCTATTTAAATTTTCTATTTACGAATTGAATGACATCACCGATTTTATTTACAAT---------------AAACTAAGAC-------ACTATAAGCTTAAAAAAACATTTAAAATCGGAAGTSizeHit CountTotal NormTotal
No Reads
droTak1
GATTTGT---TAATT----------------------------------------------------------------------------------AATAGGAATGATCTGCAAGGGTATATAAGCTTCGGCTG--GCCGAACCTAGC-TTCCTTTCTTGTTTTATC-----------------------------------------------------------------------------AAAAATTAAT-------------------------------------------------------------------------------------------------------------A--------CCAA---ATAAATATG--------------------------------------GAAAAACGTAAATTTTTTAT---------------------------------------TTATTAATA----AATTATT------------TAAATTTT-AATAAAT----------------------AT------------------------AATTAATAAC--TTTAAATAAAATAC----------------------TAAASizeHit CountTotal NormTotal
No Reads
droEug1
ATTTTTC-TATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTT---------------------------------------------------------------AATTTTA---------------------------------------------------------------------------TAGATCAAAACCGCTTTAACAAAAAACTTAAAGATACAGATGCTGTTGAGAGASizeHit CountTotal NormTotal
No Reads
dm3
TTTATTT-TTATT----------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAT-----------------------------------------------------------------------------AAATAATTTA-------------------------------------------------------------------------------------------------------------A--------TAAAAAAAAGGGAGAGAAACGATTGTTTTAATT--------------ATTATTATTATTGATTATTATTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTTAACCCAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
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S2		V146
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............................................................................................................................................................................................................................................................................................................................................................................................AAGGGAGAGAAACGATTGTTT.........................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGATTGTTTTAATT--------------ATTATTATT.............................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAGGGAGAGAAACGATTGTTTTAATC--------------......................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAACGATTGTTTT........................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGAGAGAAACGATTGTTTTAAG.....................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGGGAGAGAAACGATA.............................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAGGGAGAGAAACGATTGTT..........................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAAAAGGGAGAGAAACGA...............................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGGGAGAGAAACGAT..............................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTGTTTTAATT--------------A.....................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAGGGAGAGAAACGATTGTTTTT.......................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGGGAGAGAAACGATTG............................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTGTTTTAATT--------------ATTA..................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACGATTGTTTTAATT--------------ATTAT.................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAGGGAGAGAAACGAT..............................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGTTTAA-ATATA-----------------------------------------------TTT--TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAAACCGCTTTAACAAAAAACTCAAGGATACTGAAGCTGTTGAGAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGATACTGAAGCT.........1812.00210100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACTGAAGCTGTTGAGAGA2412.00200200000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAAGGATACTGAAGCT.........2012.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAACTCAAGGATACT...............1912.00200200000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACTCAAGGATACTGAAGCT.........2412.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAAACTCAAGGATACTGAAGC..........2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCAAGGATACTGAAGCTGTT......2511.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCAAGGATACTGA.............1811.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACTCAAGGATACTGAAGCTGTT......2711.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTCAAGGATACTGAAGCTGTT......2611.00100100000000000000
droSec2
ATTCCCT-GTTTAAATAT-A-----------------------------------------TT--TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAAACCGCTTTAACAAAAAACTCAAGGATACTGAAGCTGTTGAGAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAAAACTCAAGGATACT...............2311.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAAAACTCAAGGATACTGAAG...........2711.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAAAACTCAAGGATA.................2111.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGATACTGAAGCTGTTGAGAGA2511.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCAAGGATACTGAAG...........1811.0010001
droYak3
GGACAAC-TAATTTTACT-GC----------TATTGA---------------------AA--AAAA--ACT------------------GATT---A-TT-TTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------AAAAAAAAT--------------------------------------------------------------------------------------------------------------------------------GGGAAAAAACAATTTTATAAAAAAT-----------------------CGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GAAATAC-CATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGG---GTA----AAAATTGAAAATCATCTAT--------------TTGAAAATATTTAATT---------------------------------------------------------------TATTACT---------------------------------------------------------------------------TAGCCCGGGTCAGTTTGATCAAA----------------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TAGTTTT-GTTTG------------------------------------------------------------------------------------------------------------------------------------------------CTTGTTGACTT--------------------------------------------------------------------------------------TTA--------------------------------------------------------------------------------------------------------T--G--------GAATCAGAAAGTGGAAAAATGGAATTAAAATAT--------------TTGAAAACT---------------------------------------------------------------------------------------------------------------------------------ATGT--ATTTA--------------------------------------------------------------TTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GGAAATA-ATTAT---------------------------------------------------------------------------------------------TAATTGTAAGTGCATAATTG--------TT-GCTGAAAATGA-----------------------------------------------------------TTATATATATATTTGTATTTTAATTATTGTTGTTTTGCCGTTTTCTATTT--------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAAATCGTTTCAATAAGAAACTTAAAGACACAGATGCCGTAGAACGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAAAGACACAGATGCCGTAGAAC..2613.003300000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGATGCCGTAGAAC..1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCCGTAGAACGA1811.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGACACAGATGCCGTAGA....2211.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTAAAGACACAGATGCCGTAGAACGA2911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAAAGACACAGATGCC.........1911.001100000
droWil2
GTGATAA-ATTGAGT----TGCAGAAAACAAATTTTG------------------AACATGTA--AAATTATTA--TTAC-----------------------CAAGGACTGCAAGGGTATATAAACTTCGGCATA-GCCGATGTTAGC-TTCTT-TGATATTTATATTA----------------------------------------------------------------------------AGAAAAGAT-------------TTCATGAAATTTTTAATAATTTAGTCTTGTAGAAGTTTTTTGAACTGAAAATAAGTTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCAACAACGTCTTATATTAGAACTGAA-----TATTTATAATTGTAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.TGATAA-ATTGAGT----TGCAGAAAACAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.07100010
............................................................................................................ACTGCAAGGGTATATAAACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
............................................................................................................................................GATGTTAGC-TTCTT-TGATATTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
droVir3
CAAGCTC-GTCATTTACT-AT----------TTCCCCTGA---------------G----CAA--TATAAGCAT----TAT---G------------AAAAGGTTGGGTCTGCAAGGGTATTAGATCTTCGGCGT--GCCGAAGATTGCCTTTCTTTCTCGTTAATGTTAATTTTATAT----------------------------------------------------------------------------------------------------------------------------------GAA------------------------------------------------------------------CGGAA----ACATTCAAAT----------------------------------------------ACAGGTTG-----------GATAAAAATGACAAAAATGTTTTTTTATGATTAAATATTATATT------------T-----------------------------------------AT--AT-----T----------TGTTTA-------------------------ATAGCATCTTAAATATAAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................GCAT----TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.00200000000000500000000000010000000050000000000000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.70140000000000000000000000000000014000000000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCGGCGT--G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.5010003000000000000000000000001000040200000000000000000000000000000
.....................................................................AGCAT----TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.50100000000000000000000000000010000000000000000000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.459000000000020000000000000000070000000000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.408000000000000000000000000001400020100000000000000000000000000000
...................................................................................................................GGGTATTAGATCTTCGGCGT--GCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.357101000000050000000000000000000000000000000000000000000000000000
.................................................................TATAAGCAT----TAT---G------------AAAAGGTTGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.306000000000000000000000000002000110020000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCGGCGT--GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.204000030000000000000000000100000000000000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.204001000000000000000000000000000010000000200000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.204003000000000000000000000000010000000000000000000000000000000000
....................................................................................G------------AAAAGGTTGGGTCTGCAAGGGTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204000000000000000000000000000020000020000000000000000000000000000
...................................................................TAAGCAT----TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.204000000000000000000000000003010000000000000000000000000000000000
.....................................................................AGCAT----TAT---G------------AAAAGGTTGGGTCTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000100000000000000000200000000000000000000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.153000000000000000000000000000000030000000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCGGCGT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000000000000000000000000000000000010000200000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000000000000000000000000300000000000000000000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGGGTCTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000000000000000000000000000000000030000000000000000000000000000
...................................................................TAAGCAT----TAT---G------------AAAAGGTTGGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000000000000100000000000001000000001000000000000000000000000000
...................................................................TAAGCAT----TAT---G------------AAAAGGTTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000000000000000000000000102000000000000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000010000000000000000000000000000200000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153000000000000000000000001000000000002000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCAAGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000200000000000000000100000000000000000000000000000000
......................................................................................................................TATTAGATCTTCGGCGT--GCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000000300000000000000000000000000000000000000000000000000000000
.........................................................................T----TAT---G------------AAAAGGTTGGGTCTGCAAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000000000000000000030000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCAAGGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000002000000000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000100000000000000001000000000000000000000000000000000000000
................................................................................T---G------------AAAAGGTTGGGTCTGCAAGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000000000000000000001000000001000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000002000000000000000000000000000000000000000
............................................................................................................TCTGCAAGGGTATTAGATCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000000020000000000000000000000000000000
.........................................................................T----TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002000000000000000000000000000000000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000000000000020000000000000000000000000000
.......................................................................CAT----TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGCAAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010000000000000000000000000000000000000000000000000000000000
............................................................................................................TCTGCAAGGGTATTAGATCTTCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTGGGTCTGCAAGGGTATTAGATCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000100000000000000000000000000000
................................................................................T---G------------AAAAGGTTGGGTCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................CTGCAAGGGTATTAGATCTTCGGCGT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................GTCTGCAAGGGTATTAGATCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................AT---G------------AAAAGGTTGGGTCTGCAAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................GTCTGCAAGGGTATTAGATCTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000001000000000000000000000000
.........................................................................T----TAT---G------------AAAAGGTTGGGTCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000001000000000000000000000000000000000000000000000000000000
.................................................................TATAAGCAT----TAT---G------------AAAAGGTTGGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGGGTCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
.....................................................................AGCAT----TAT---G------------AAAAGGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTGCAAGGGTATTAGATCTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000100000000000000000000000
...................................................................TAAGCAT----TAT---G------------AAAAGGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001000000000000000000000000000000000000000000000000000000000
....................................................................AAGCAT----TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................CAT----TAT---G------------AAAAGGTTGGGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................AGCAT----TAT---G------------AAAAGGTTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................AAGCAT----TAT---G------------AAAAGGTTGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................GCAT----TAT---G------------AAAAGGTTGGGTCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
.................................................................TATAAGCAT----TAT---G------------AAAAGGTTGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................AGGGTATTAGATCTTCGGCGT--GCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................TGCAAGGGTATTAGATCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................GGTATTAGATCTTCGGCGT--GCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000010000000000000000000000000000000000000000000000000000
.........................................................................T----TAT---G------------AAAAGGTTGGGTCTGCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000010000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000010000000000000000000000000000000000000000000000000000
.......................................................................CAT----TAT---G------------AAAAGGTTGGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000100000000000000000000000000000000000000000000000000000
............................................................................................................TCTGCAAGGGTATTAGATCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................AGGGTATTAGATCTTCGGCGT--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
................................................................................T---G------------AAAAGGTTGGGTCTGCAAGGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000100000000000000000000000000000000000000000000000000
..............................................................................TAT---G------------AAAAGGTTGGGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................GTATTAGATCTTCGGCGT--GCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
................................................................................T---G------------AAAAGGTTGGGTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
...................................................................TAAGCAT----TAT---G------------AAAAGGTTGGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
...................................................................................................AAGGTTGGGTCTGCAAGGGTATTAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
TTTATTT-TTTAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAATTTAA--------------------------------------------------------------------------------------------------------A--T---------------AAAAGACAAAAATAATAATAATAAGT--------------ACAAAAATAAAAAACTAATTATTATATTAAATTT--------------------------------------------------------------------------------------------------------------------------------AAAAGTAAG-----------------------------TTTTTTTAAATAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCAATAT-ACAAA-T----AC----------AAATAA------------------AACATACA--AATACAGATTAACTCC-------------------------GTTCTAGAAGGGTATATAATCTTCGGCGT--GCCTAAGATAAACCTTGCTTCTTGCTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:54 AM