ID:

dan_1202

 Coordinate:

scaffold_13082:3635565-3635715 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.1 -10.9

Flybase annnotation

CDS [Dana\GF20570-cds]; exon [dana_GLEANR_3406:9]; intron [Dana\GF20570-in]

No Repeatable elements found

mature
star
  1. scaffold_1258:8809-8836 +
  2. scaffold_4934:215-242 +
  3. scaffold_6853:7190-7217 +
  4. scaffold_12211:209-236 +
  5. scaffold_12947:1554683-1554710 +
  6. scaffold_12950:1821-1848 +
  7. scaffold_12950:4946-4973 +
  8. scaffold_13034:896213-896240 +
  9. dan_1202  scaffold_13082:3635672-3635699 +
  10. scaffold_13089:376162-376189 +
  11. scaffold_13089:673437-673464 +
  12. scaffold_13168:1117-1144 +
  13. scaffold_13230:3592021-3592048 +
  14. scaffold_13261:156973-157000 +
  15. scaffold_13280:1425079-1425106 +
  16. scaffold_13339:3107975-3108002 +
  17. scaffold_13417:1039301-1039328 +
  18. scaffold_13417:5044473-5044500 +
  19. scaffold_13417:5061387-5061414 +
  20. scaffold_13499:542204-542231 +
  21. scaffold_12140:4552-4579 +
  22. scaffold_12911:2015917-2015944 +
  23. scaffold_12944:121588-121615 +
  24. scaffold_13260:1196772-1196799 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTAGCAAAACACATGTGTATGATTATGATGGAAATGACTGATTTCACCAGGTAAGAAACTTTTTATAGAATTATATTCTAGTTGGCTAATTTTGTCCAGATGTGGGAAAAGTATTGAAACGTATAACGTATATATATTCGTCGCTGGGTGGGCGATTTTGGTCTGGTCAAAATAATAAGTACACCTGTGTATTTGATAAATTTTAAAGGATTAAAGCTAGATTCGAGTTAAGATATGTTGGTTTTTATTAT
*****************************************************************************************************(((((((..((((....((((...))))..)))).))).))))(((.(((((.......))))).)))................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V105
male body		 M044
female body
 V039
embryo
 V106
head
....................GATTATGATGGAAATGACTG................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
.....................................................................................................GTGGGAAAAGTATTGAAAC................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.............TGTGTATGATTATGATGGAAAT........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1
......AAACACATCTGTGTGATTATGATGGAA.......................................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0
....................GATTATGATGGAAATGACT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.......................TATGATGGAAATGACTGATT................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0
.............................................................................................................................................................TTGGTCTGGTCAAAATAATAAGTACACC.................................................................. 28 0 20 0.35 7 6 0 1 0 0
...................................................................................................................................................................................................................TAAAGCTAGATTCGAGTTAAGATATG.............. 26 0 20 0.15 3 0 0 0 3 0
............................................................................................................................................................TTTGGTCTGGTCAAAATAATAAGTACACC.................................................................. 29 0 20 0.15 3 3 0 0 0 0
.........................................................................................................................................................................................................................TAGATTCGAGTTAAGATATGTTGGTT........ 26 0 20 0.10 2 0 0 2 0 0
.........................................................................................................................................................................AAATAATAAGTACACCTGTGTATT.......................................................... 24 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................TAAAGGATTAAAGCTAGATTCGAGT....................... 25 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................TGGTCAAAATAATAAGTACACC.................................................................. 22 0 20 0.10 2 2 0 0 0 0
............................................................................................................................................................................................................AAAGGATTAAAGCTAGATTCGAGT....................... 24 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................................GATTCGAGTTAAGATATGTTGGTTTT...... 26 0 20 0.10 2 0 1 1 0 0
.............................................................................................................................................................................................................................TTCGAGTTAAGATATGTTGGTTTTTAT... 27 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................................................................TGATAAATTTTAAAGGATTAAAGC.................................. 24 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................................................................CTAGATTCGAGTTAAGATATGTTG........... 24 0 20 0.05 1 0 0 1 0 0
...................................................................................................................................................................................TACACCTGTGTATTTGATAAATTTTA.............................................. 26 0 20 0.05 1 0 0 1 0 0
......................................................................................................................................................................TCAAAATAATAAGTACACCTGTGTATT.......................................................... 27 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................TAAAGCTAGATTCGAGTTAAGATATGT............. 27 0 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................................................TTTTAAAGGATTAAAGCTAGA.............................. 21 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................TGGGCGATTTTGGTCTGGTCAAAAT.............................................................................. 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................GTCTGGTCAAAATAATAAGTACACC.................................................................. 25 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................GCTGGGTGGGCGATTTTGGTC........................................................................................ 21 0 20 0.05 1 0 0 0 0 1
....................................................................................................................................................TGGGCGATTTTGGTCTGGTCAAAATA............................................................................. 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................TCGAGTTAAGATATGTTGGTTTT...... 23 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................................................................TAGATTCGAGTTAAGATATGTTGGTTT....... 27 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................GATTTTGGTCTGGTCAAAA............................................................................... 19 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................................................................AGATTCGAGTTAAGATATGTTGGTT........ 25 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................................TTGATAAATTTGAAAGGATTAAAG................................... 24 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................TCGAGTTAAGATATGTTGGTTTTTATT.. 27 0 20 0.05 1 0 0 1 0 0
.................................................................................................................................................................TCTGGTCAAAATAATAAGTACACC.................................................................. 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................CTGGGTGGGCGATTTTGGTCTG...................................................................................... 22 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................................TTGATAAATTTGAAAGGATTAAAGC.................................. 25 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................TCGTGTTAAGATATGTTGGT......... 20 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................TGAGAAATTTTAAAGGATTAAAGCT................................. 25 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................TTCGAGTTAAGATATGTTGGTT........ 22 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................................GATTCGAGTTAAGATATGTTGGTTTC...... 26 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................GATTCGAGTTAAGATATGTTGGTTTTT..... 27 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................TTAAAGCTAGATTCGAGTTAAGAT................. 24 0 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................................................GAGTTAAGATATGTTGGTTTTTATC.. 25 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................TGGGCGATTTTGGTCTGGTCAAAATAA............................................................................ 27 0 20 0.05 1 0 0 1 0 0
......................................................................................................................................................................TCAAAATAATCAGTACACCTGTGTATT.......................................................... 27 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................GCTAGATTCGAGTTAAGATATGTTGG.......... 26 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................TAGATTCGAGTTAAGATATGTTGG.......... 24 0 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................AAAATAATAAGTACACCTGTGT............................................................. 22 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................ATCTGATAAATTTTAAAGGATTAAAGCC................................. 28 2 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................GCTAGATTCGAGTTAAGATATGTTGGT......... 27 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AATCGTTTTGTGTACACATACTAATACTACCTTTACTGACTAAAGTGGTCCATTCTTTGAAAAATATCTTAATATAAGATCAACCGATTAAAACAGGTCTACACCCTTTTCATAACTTTGCATATTGCATATATATAAGCAGCGACCCACCCGCTAAAACCAGACCAGTTTTATTATTCATGTGGACACATAAACTATTTAAAATTTCCTAATTTCGATCTAAGCTCAATTCTATACAACCAAAAATAATA
******************************************************************(((((((..((((....((((...))))..)))).))).))))(((.(((((.......))))).)))................***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 M058
embryo
 M044
female body
 V106
head
 V055
head
 V105
male body
.ATCGTTTTGTGAACACATG....................................................................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................CTCTGGACACAAAAACTATTT................................................... 21 3 20 0.70 14 0 0 14 0 0 0
......................................................................................................................................................CCGCTAAAACCAGACCAGTTTTAT............................................................................. 24 0 20 0.65 13 0 13 0 0 0 0
....................................................................................................................................................................................TCTGGACACAAAAACTAT..................................................... 18 2 20 0.20 4 0 0 4 0 0 0
.....................................................................................................................................................................................CTGGACACAAAAACTATTT................................................... 19 2 20 0.15 3 0 0 0 3 0 0
.................................................................................................................................................................................CCATGTGGACACATAAACTATTTAAA................................................ 26 1 20 0.15 3 0 3 0 0 0 0
...............................................................................................................................................................CCAGACCAGTTTTATTATTCATG..................................................................... 23 0 20 0.15 3 0 3 0 0 0 0
.............................................................................................................................................................................................................TTCCTAATTTCGATCTAAGCTCAATT.................... 26 0 20 0.15 3 0 0 3 0 0 0
................................................................................................................................................ACCCACCCGCTAAAACCAGACC..................................................................................... 22 0 20 0.15 3 0 0 3 0 0 0
..............................................................................................................................................CGACCCACCCGCTAAAACCAGAC...................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0
..................................................................................................................................................CCACCCGCTAAAACCAGACCAGTTTTATT............................................................................ 29 0 20 0.10 2 0 2 0 0 0 0
....................................................................................................................................................................................TCTGGACACAAAAACTATTT................................................... 20 2 20 0.10 2 0 0 1 0 0 1
...................................................................................................................................TTGTTAAGCAGCGACCCAC..................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0
.................................................................................................................................................CCCACCCGCTAAAACCAGACCAGTTT................................................................................ 26 0 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................CCCACCCGCTAAAACCAGACCAGTT................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................................................AAAACCAGACCAGTTTTATTATTCAT...................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................GACCCACCCGCTAAAACCAGA....................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................CCCACCCGCTAAAACCAGACCAG................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................CCACCCGCTAAAACCAGACCATTTT................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................CCTCTGGACACAAAAACTAT..................................................... 20 3 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................CATGTGGACACATAAACTATTTA.................................................. 23 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................CCGCTAAAACCAGACCAGTTTTATTATT......................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
................................................................................................................................................................................................................CTAATTTCGATCTAAGCTCAATTC................... 24 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................ACCCGCTAAAACCAGACCAGTTTTATTAT.......................................................................... 29 0 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................CCACCCGCTAAAACCAGACTAGTCTC............................................................................... 26 3 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................................TCCTAATTTCGATCTAAGCTCAATGC................... 26 1 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................ACCCACCCGCTAAAACCAGAC...................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................CCACCCGCTAAAACCAGACCAGTTGT............................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................CCGCTAAAACCAGACCAATTTTAT............................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................CACCCGCTAAAACCAGACCAGTTTTA.............................................................................. 26 0 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................................................TTTCCTAATTTCGATCTAAGCTCAA...................... 25 0 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................................................................................................TAATTTCGATCTAAGCTCAATT.................... 22 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................TCATGTGGACACATAAACTATTTAAA................................................ 26 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................TCTGGACACAGAAACTATT.................................................... 19 2 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................CCAACCGCTAAAACCAGACCAGTTT................................................................................ 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................TATTCATGTGGACACATAAACTAT..................................................... 24 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................................................................TCCTAATTTCGATCTAAGCTCAATTC................... 26 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................................................CTAATTTCGATCTAAGCTCAATGC................... 24 1 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................CCACCCGCTAAAACCAGACCAGT.................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................CCAGACCAGTTTTATTATTC........................................................................ 20 0 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13082:3635515-3635765 + dan_1202 TTAGCAAAACACATGTGTATGATTATGATGGAAATGACTGATTTCACCAGGTAAGAAACTTTTTATAGAATTATATTCTAG-----TTGGCTAATTTTGTCCAGATGTGGGAAAAGTATTGAAACGTATAACGTATATATATTCGTCGCTGGG-TGGGCGATTTTGGTCTGGTCAAAATAATAAGTACACCTGTGTATTTGATAAATTTTAAAGGATTAAAGCTAGATTCGAGTTAAG---ATATGTTGGTTTTTATTAT-
droBip1 scf7180000393432:29442-29559 + TAA-----------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TCTGGA-TGGGCGTTTTTGGTCTGGTCAAAATAATAAGTACACTTCTATTATTCACAAATTTGAAAGGATTAAGTTTAGCATTGGACTATG---GTATGTTTATTTTTAATGA-
droKik1 scf7180000301666:21749-21836 - TTAGCCAAACATATGTGTATGATTATGATGGAGATGACTGATTTTACCAGGTAAA--------------------------------------------------------------------------------------------------------------------------ATTATAAAATTATTTTAGCTATTT--------------------------------------------------TATTTATTT-
droFic1 scf7180000454144:405284-405402 - TAA-----------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TCTGGA-TGGTCGTTTTTGGTCTGGTCAAAATAATAAGTACACATCCATTATTCACAAATTTGAAAGGATTAAGTTTAGAATTGGACTACG---GTATGTTGATTTTTAATCAT
droEle1 scf7180000490420:1561-1691 + TA--CAAAGCATAAATCTGT-------------------------------------------------------------------------------------------------------------------------------GCTGGATTGGCCGTCTTTGCTCTGGTCAAAATAATAAGTACACTAGTAATTTTATTAAATTTTAAGACATTTAACCTAGGTTTGGGCTAAGAAGCTATTGTGGTTTTTATTAA-
droRho1 scf7180000778513:18975-19092 + TAA-----------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TCTGGA-TGGTCGTTTTTGGTCTGGTCAAAATAATAAGTACACTTCCATTATTCACAAATTTGAAAGGATTAAATTTAGAATTGGACTACG---GTATGTTGATTTTTAATGA-
droBia1 scf7180000302208:26097-26152 + TTGGCTAAACATATGTGCATGATTATGATGGAAATGACCGACTTTACCAGGTAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415861:18727-18855 + GTC---TAATCCATGTAC--------------------------------------------------------------------------------------------------------------------------ATTTGT-GC-GAT-AGGTCGGTTTTGGTGTGGTCAAAATAATAAGTACACTTGTGTTACTTATAAATTTTAAAATATTAAATATAGAATGGGGCTACG---GTTAGTATTTTATCTTAAG-
droEug1 scf7180000408984:22244-22351 + CTGGATGGTCGT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGACTGGTCAAAATTATAAATACACTTCCGCTATTTACAAATTTGAAAGGATTAAGTTTAGAATTGGACTACG---GTATGTTGATTTTTAATGA-
dm3 chr3L:23318711-23318791 - CTGGCCAAACATATGTGCATGATTATGATGGAAATGACGGATTTTACCAGGTTAGTTCCCTTAGATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATTT-----TA-
droSim2 2l:21856483-21856584 + CTGGCCAAACATATGTGTATGATTATGATGGAAATGACGGATTTTACTAGGTAAGTTTCCTTAT--AGATATCCCTCTTAGACATTTTGGTTA------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATATTTAT-
droSec2 scaffold_41:207341-207428 - CTGGCCAAACATATGTGTATGATTATGATGGAAATGACGGATTTTACTAGGTAAGTTTCCTTAT--AGA------------------------------------------------------------------------------------------------------------------------TATCCCTCTTAGACATTTT--------------------------------------------------TG-
droYak3 3L:23902583-23902637 - CTTGCCAAACATATGTGTATGATTATGATGGAAATGACGGATTTTACTAGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:22838341-22838413 + CTGGCCAAGCATATGTGTATGATTATGATGGAAATGACGGATTTCACAAGGTAAGTTCCCTAAT--AAA--------------------------------------------------------------------------------------------------------------------------------CTTT---------------------------------------------------------TT-
dp5 Unknown_group_54:33307-33428 + TGCAT-----------------------------------------------------------------------------------------------------------------------------------AC--ATTTTT-GCTGAA-TGGGCATTTTTGGTCTGGCCAAAATAATAAGTACACTGGTGTTATTTATAAATTTTAAAGGATTAGATAAGGATTTGGTCAAAG---GATTGTTTGTTTTTATCGA-
droPer2 scaffold_162:45526-45676 - AAG------------------------------------------------------------------------------------------------------TGGGGAACAAGCTTTATAAAATTCTATGCTTAA--ATTTTT-GTTGGA-TGGACATTTTTGGTCTGGCCAAAATAATAAGTACACTGGTGTTATTAATAAATTTAAAAGGGTTTGTTATGGATTTGGTCAACG---GCTTGTTGGTTTTTATTGA-
droWil2 scf2_1100000004902:6043050-6043107 + TTGGCTAAACATATGTGTATGATTATGATGGAGATGACAGATTTTACCAGGTGCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-
droVir3 scaffold_12958:958156-958208 - TTGGCAAAACATATGTGTATGATAATGATGGAGATGACTGACTTCACTAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:4121882-4121935 + TTGGCAAAACATATGTGTATGATAATGATGGAAATGACGGACTTCACAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:8819535-8819602 + TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATATCGATATTTTCGATAGATTTTAAAGATTTTAAATTAA-----------A---ATACTTTATTTTTAAATAT-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTAGCAAAACACATGTGTATGATTATGATGGAAATGACTGATTTCACCAGGTAAGAAACTTTTTATAGAATTATATTCTAG-----TTGGCTAATTTTGTCCAGATGTGGGAAAAGTATTGAAACGTATAACGTATATATATTCGTCGCTGGG-TGGGCGATTTTGGTCTGGTCAAAATAATAAGTACACCTGTGTATTTGATAAATTTTAAAGGATTAAAGCTAGATTCGAGTTAAG---ATATGTTGGTTTTTATTAT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................GATTATGATGGAAATGACTG.............................................................................................................................................................................................................................2011.001000010
..........................................................................................................GTGGGAAAAGTATTGAAAC........................................................................................................................................1911.001010000
.............TGTGTATGATTATGATGGAAAT..................................................................................................................................................................................................................................2211.001000001
....................GATTATGATGGAAATGACT..............................................................................................................................................................................................................................1911.001000010
.......................TATGATGGAAATGACTGATT..........................................................................................................................................................................................................................2011.001001000
...................................................................................................................................................................TTGGTCTGGTCAAAATAATAAGTACACC......................................................................28200.357160000
.........................................................................................................................................................................................................................TAAAGCTAGATTCGAGTTAAG---ATATG...............26200.153003000
..................................................................................................................................................................TTTGGTCTGGTCAAAATAATAAGTACACC......................................................................29200.153030000
...............................................................................................................................................................................................................................TAGATTCGAGTTAAG---ATATGTTGGTT.........26200.102200000
...............................................................................................................................................................................AAATAATAAGTACACCTGTGTATT..............................................................24200.102020000
.................................................................................................................................................................................................................TAAAGGATTAAAGCTAGATTCGAGT...........................25200.102020000
.........................................................................................................................................................................TGGTCAAAATAATAAGTACACC......................................................................22200.102020000
..................................................................................................................................................................................................................AAAGGATTAAAGCTAGATTCGAGT...........................24200.102020000
.................................................................................................................................................................................................................................GATTCGAGTTAAG---ATATGTTGGTTTT.......26200.102100010
...................................................................................................................................................................................................................................TTCGAGTTAAG---ATATGTTGGTTTTTAT....27200.102020000
.......................................................................................................................................................................................................TGATAAATTTTAAAGGATTAAAGC......................................24200.102020000
..............................................................................................................................................................................................................................CTAGATTCGAGTTAAG---ATATGTTG............24200.051100000
.........................................................................................................................................................................................TACACCTGTGTATTTGATAAATTTTA..................................................26200.051100000
............................................................................................................................................................................TCAAAATAATAAGTACACCTGTGTATT..............................................................27200.051010000
.........................................................................................................................................................................................................................TAAAGCTAGATTCGAGTTAAG---ATATGT..............27200.051100000
..............................................................................................................................................................................................................TTTTAAAGGATTAAAGCTAGA..................................21200.051000010
..........................................................................................................................................................TGGGCGATTTTGGTCTGGTCAAAAT..................................................................................25200.051010000
......................................................................................................................................................................GTCTGGTCAAAATAATAAGTACACC......................................................................25200.051010000
...................................................................................................................................................GCTGGG-TGGGCGATTTTGGTC............................................................................................21200.051000001
..........................................................................................................................................................TGGGCGATTTTGGTCTGGTCAAAATA.................................................................................26200.051010000
....................................................................................................................................................................................................................................TCGAGTTAAG---ATATGTTGGTTTT.......23200.051100000
...............................................................................................................................................................................................................................TAGATTCGAGTTAAG---ATATGTTGGTTT........27200.051100000
...............................................................................................................................................................GATTTTGGTCTGGTCAAAA...................................................................................19200.051100000
................................................................................................................................................................................................................................AGATTCGAGTTAAG---ATATGTTGGTT.........25200.051100000
....................................................................................................................................................................................................................................TCGAGTTAAG---ATATGTTGGTTTTTATT...27200.051100000
.......................................................................................................................................................................TCTGGTCAAAATAATAAGTACACC......................................................................24200.051010000
....................................................................................................................................................CTGGG-TGGGCGATTTTGGTCTG..........................................................................................22200.051100000
...................................................................................................................................................................................................................................TTCGAGTTAAG---ATATGTTGGTT.........22200.051000010
.................................................................................................................................................................................................................................GATTCGAGTTAAG---ATATGTTGGTTTC.......26200.051010000
.................................................................................................................................................................................................................................GATTCGAGTTAAG---ATATGTTGGTTTTT......27200.051010000
........................................................................................................................................................................................................................TTAAAGCTAGATTCGAGTTAAG---AT..................24200.051000010
......................................................................................................................................................................................................................................GAGTTAAG---ATATGTTGGTTTTTATC...25200.051010000
..........................................................................................................................................................TGGGCGATTTTGGTCTGGTCAAAATAA................................................................................27200.051100000
.............................................................................................................................................................................................................................GCTAGATTCGAGTTAAG---ATATGTTGG...........26200.051010000
...............................................................................................................................................................................................................................TAGATTCGAGTTAAG---ATATGTTGG...........24200.051100000
..............................................................................................................................................................................AAAATAATAAGTACACCTGTGT.................................................................22200.051010000
.............................................................................................................................................................................................................................GCTAGATTCGAGTTAAG---ATATGTTGGT..........27200.051010000
droBip1
TAA-----------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TCTGGA-TGGGCGTTTTTGGTCTGGTCAAAATAATAAGTACACTTCTATTATTCACAAATTTGAAAGGATTAAGTTTAGCATTGGACTATG---GTATGTTTATTTTTAATGA-SizeHit CountTotal NormTotal
No Reads
droKik1
TTAGCCAAACATATGTGTATGATTATGATGGAGATGACTGATTTTACCAGGTAAA--------------------------------------------------------------------------------------------------------------------------ATTATAAAATTATTTTAGCTATTT--------------------------------------------------TATTTATTT-SizeHit CountTotal NormTotal
No Reads
droFic1
TAA-----------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TCTGGA-TGGTCGTTTTTGGTCTGGTCAAAATAATAAGTACACATCCATTATTCACAAATTTGAAAGGATTAAGTTTAGAATTGGACTACG---GTATGTTGATTTTTAATCATSizeHit CountTotal NormTotal
No Reads
droEle1
TA--CAAAGCATAAATCTGT-------------------------------------------------------------------------------------------------------------------------------GCTGGATTGGCCGTCTTTGCTCTGGTCAAAATAATAAGTACACTAGTAATTTTATTAAATTTTAAGACATTTAACCTAGGTTTGGGCTAAGAAGCTATTGTGGTTTTTATTAA-SizeHit CountTotal NormTotal
No Reads
droRho1
TAA-----------------------------------------------------------------------------------------------------------------------------------------ATTTGT-TCTGGA-TGGTCGTTTTTGGTCTGGTCAAAATAATAAGTACACTTCCATTATTCACAAATTTGAAAGGATTAAATTTAGAATTGGACTACG---GTATGTTGATTTTTAATGA-SizeHit CountTotal NormTotal
No Reads
droBia1
TTGGCTAAACATATGTGCATGATTATGATGGAAATGACCGACTTTACCAGGTAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTC---TAATCCATGTAC--------------------------------------------------------------------------------------------------------------------------ATTTGT-GC-GAT-AGGTCGGTTTTGGTGTGGTCAAAATAATAAGTACACTTGTGTTACTTATAAATTTTAAAATATTAAATATAGAATGGGGCTACG---GTTAGTATTTTATCTTAAG-SizeHit CountTotal NormTotal
No Reads
droEug1
CTGGATGGTCGT-----------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGACTGGTCAAAATTATAAATACACTTCCGCTATTTACAAATTTGAAAGGATTAAGTTTAGAATTGGACTACG---GTATGTTGATTTTTAATGA-SizeHit CountTotal NormTotal
No Reads
dm3
CTGGCCAAACATATGTGCATGATTATGATGGAAATGACGGATTTTACCAGGTTAGTTCCCTTAGATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATTT-----TA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................TGATGGAAATGACGGATTTTACCAGA..................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101000
......................TTATGATGGAAATGACGGATTTTACCAG...................................................................................................................................................................................................................2815.0050000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000100
..................ATGATTATGATGGAAATGACGGAT...........................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000
....................GATTATGATGGAAATGACG..............................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............TGTGCATGATTATGATGGAAATGACGGA............................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGATGGAAATGACGGATTTTACCAGAG.................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000200000
.......................TATGATGGAAATGACGGATT..........................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGATTATGATGGAAATGACGGATTT.........................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AATGACGGATTTTACCAG...................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................TGATTATGATGGAAATGAC...............................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTATGATGGAAATGACGGATTTTACCA....................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................GAAATGACGGATTTTACCAGGT.................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGCATGATTATGATGGAAATGACGGA............................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................TGATTATGATGGAAATGACGGA............................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................TATGATGGAAATGACGGAT...........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAATGACGGATTTTACCAGAG.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGTGCATGATTATGATGGAAAT..................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCATGATTATGATGGAAATGAC...............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TATGATGGAAATGACGGATTTTACCA....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................ATGATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATGATGGAAATGACGGATTTTACC.....................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATGATTATGATGGAAATGAC...............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTATGATGGAAATGACGGATTTTACC.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................ATGATGGAAATGACGGATTTTACCAGAG.................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................TATGATGGAAATGACGGATTTTACC.....................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................GATGGAAATGACGGATTTTACCAGAGG................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................ATGGAAATGACGGATTTTACC.....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............ATGTGCATGATTATGATGGAAA...................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GATGGAAATGACGGATTTTACA.....................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................TGATTATGATGGAAATGACGGATT..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATGATTATGATGGAAATGACG..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TATGATGGAAATGACGGATTTTACCAGA..................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGCATGATTATGATGGAAATG.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........TATGTGCATGATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGTGCATGATTATGATGGAAAT..................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.TGGCCAAACATATGTGCATGATT.............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GATTATGATGGAAATGACGGA............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......AACATATGTGCATGATTATGATGG......................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GATGGAAATGACGGATTTTACCAGA..................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GGCCAAACATATGTGCATGAT..............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTATGATGGAAATGACGGATTTTACCAT...................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATGTGCATGATTATGATGGAAATGACGGA............................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GTGCATGATTATGATGGAA....................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATGATGGAAATGACGGATTTTACCAGA..................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................GATGGAAATGACGGATGA.........................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
CTGGCCAAACATATGTGTATGATTATGATGGAAATGACGGATTTTACTAGGTAAGTTTCCTTAT--AGATATCCCTCTTAGACATTTTGGTTA------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATATTTAT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........CATATGTGTATGATTATGATGGAAATGA................................................................................................................................................................................................................................2820.50100000000010000000
..................ATGATTATGATGGAAATGACGGAT...........................................................................................................................................................................................................................2420.50100010000000000000
.............TGTGTATGATTATGATGGAAATGACGGA............................................................................................................................................................................................................................2820.50100000001000000000
...........TATGTGTATGATTATGATGGAAATGAC...............................................................................................................................................................................................................................2720.50100000000001000000
......................TTATGATGGAAATGACGGAT...........................................................................................................................................................................................................................2020.50100000001000000000
droSec2
CTGGCCAAACATATGTGTATGATTATGATGGAAATGACGGATTTTACTAGGTAAGTTTCCTTAT--AGA------------------------------------------------------------------------------------------------------------------------TATCCCTCTTAGACATTTT--------------------------------------------------TG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................GTATGATTATGATGGAAA...................................................................................................................................................................................................................................1811.0010010
............ATGTGTATGATTATGATGGAAAT..................................................................................................................................................................................................................................2311.0010010
..............GTGTATGATTATGATGGAAA...................................................................................................................................................................................................................................2011.0010010
..................ATGATTATGATGGAAATGAC...............................................................................................................................................................................................................................2011.0010010
............ATGTGTATGATTATGATGGA.....................................................................................................................................................................................................................................2011.0010010
droYak3
CTTGCCAAACATATGTGTATGATTATGATGGAAATGACGGATTTTACTAGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............ATGTGTATGATTATGATGGAAATGACGGATT..........................................................................................................................................................................................................................3112.00200000000002
..................ATGATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2212.00200000020000
.............................GGAAATGACGGATTTTACTAGAG.................................................................................................................................................................................................................2311.00100000010000
..................ATGATTATGATGGAAATGACGGA............................................................................................................................................................................................................................2311.00100000010000
....................GATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2011.00100000010000
................................AATGACGGATTTTACTAGA..................................................................................................................................................................................................................1911.00100000010000
....................GATTATGATGGAAATGACGGATT..........................................................................................................................................................................................................................2311.00100000010000
..........................GATGGAAATGACGGATTTTACTAGA..................................................................................................................................................................................................................2511.00101000000000
.............................GGAAATGACGGATTTTACTAGA..................................................................................................................................................................................................................2211.00100000010000
...............TGTATGATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2511.00100000010000
................GTATGATTATGATGGAAATGACGGATTT.........................................................................................................................................................................................................................2811.00100000010000
.......................TATGATGGAAATGACGGATTTTACTAGAG.................................................................................................................................................................................................................2911.00100000010000
droEre2
CTGGCCAAGCATATGTGTATGATTATGATGGAAATGACGGATTTCACAAGGTAAGTTCCCTAAT--AAA--------------------------------------------------------------------------------------------------------------------------------CTTT---------------------------------------------------------TT-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................GATTATGATGGAAATGACGGATT..........................................................................................................................................................................................................................2312.0020000200
..........ATATGTGTATGATTATGATGGA.....................................................................................................................................................................................................................................2211.0010000100
CTGGCCAAGCATATGTGTATGATTAT...........................................................................................................................................................................................................................................2611.0010000100
..........ATATGTGTATGATTATGATGGAAAT..................................................................................................................................................................................................................................2511.0010000100
................GTATGATTATGATGGAAATGACG..............................................................................................................................................................................................................................2311.0010000010
....................GATTATGATGGAAATGACGG.............................................................................................................................................................................................................................2011.0010000010
..................ATGATTATGATGGAAATGACGGAT...........................................................................................................................................................................................................................2411.0010000010
.......................TATGATGGAAATGACGGATT..........................................................................................................................................................................................................................2011.0010000100
.................................ATGACGGATTTCACAAGAG.................................................................................................................................................................................................................1940.2510000100
dp5
TGCAT-----------------------------------------------------------------------------------------------------------------------------------AC--ATTTTT-GCTGAA-TGGGCATTTTTGGTCTGGCCAAAATAATAAGTACACTGGTGTTATTTATAAATTTTAAAGGATTAGATAAGGATTTGGTCAAAG---GATTGTTTGTTTTTATCGA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................TTTGGTCAAAG---GATTGTTTGT..........2111.0010100000000
........................................................................................................................................................................................................TATAAATTTTAAAGGATTAGA........................................2120.5010000000100
...................................................................................................................................................GCTGAA-TGGGCATTTTTGGTC............................................................................................2130.3310010000000
..................................................................................................................................................................................................................................ATTTGGTCAAAG---GATTGTT.............19100.1010100000000
....................................................................................................................................................................TGGTCTGGCCAAAATAATAAGTACAC.......................................................................26130.0810100000000
droPer2
AAG------------------------------------------------------------------------------------------------------TGGGGAACAAGCTTTATAAAATTCTATGCTTAA--ATTTTT-GTTGGA-TGGACATTTTTGGTCTGGCCAAAATAATAAGTACACTGGTGTTATTAATAAATTTAAAAGGGTTTGTTATGGATTTGGTCAACG---GCTTGTTGGTTTTTATTGA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTGGCTAAACATATGTGTATGATTATGATGGAGATGACAGATTTTACCAGGTGCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......AACATATGTGTATGATTATGATGGAG....................................................................................................................................................................................................................................2611.00100001
.............................GGAGATGACAGATTTTACCAGAG.................................................................................................................................................................................................................2311.00100100
.........CATATGTGTATGATTATGATGGAG....................................................................................................................................................................................................................................2411.00100010
....................GATTATGATGGAGATGACAG.............................................................................................................................................................................................................................2011.00100100
droVir3
TTGGCAAAACATATGTGTATGATAATGATGGAGATGACTGACTTCACTAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................TGATGGAGATGACTGACTTCAC......................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
..........ATATGTGTATGATAATGATGGAGATGACTGACTTCACTAGGT.................................................................................................................................................................................................................4211.001000000000000000000000000000000000000000000000000000000100000000
............ATGTGTATGATAATGATGGAG....................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.............TGTGTATGATAATGATGGAGATGAC...............................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
..................ATGATAATGATGGAGATGACTGACT..........................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..................ATGATAATGATGGAGATGACTGACTTC........................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..........ATATGTGTATGATAATGATGGAGAT..................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
......................TAATGATGGAGATGACTGACTTCACT.....................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..........................GATGGAGATGACTGACTT.........................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
.................................ATGACTGACTTCACTAGGT.................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000010000000000000000
.............TGTGTATGATAATGATGGAG....................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
TTGGCAAAACATATGTGTATGATAATGATGGAAATGACGGACTTCACAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................GTATGATAATGATGGAAATGACGGA............................................................................................................................................................................................................................2511.001000001
.............................GGAAATGACGGACTTCACAAGAG.................................................................................................................................................................................................................2311.001000001
..........ATATGTGTATGATAATGATGGA.....................................................................................................................................................................................................................................2211.001000001
droGri2
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATATCGATATTTTCGATAGATTTTAAAGATTTTAAATTAA-----------A---ATACTTTATTTTTAAATAT-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:48 AM