ID:

dan_1177

 Coordinate:

scaffold_13082:403256-403406 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.1 -6.8 -6.8

Flybase annnotation

CDS [Dana\GF20548-cds]; exon [dana_GLEANR_3253:3]; intron [Dana\GF20548-in]; Antisense to intron [Dana\GF20554-in]

Repeatable elements

NameClassFamilyStrand
LOOPER1_DMDNAPiggyBac-
mature
  1. scaffold_6534:1559-1582 +
  2. scaffold_10061:3063-3086 -
  3. scaffold_12905:306489-306512 +
  4. scaffold_12926:13231-13254 -
  5. scaffold_12947:682169-682192 -
  6. scaffold_13010:321299-321322 +
  7. scaffold_13034:742175-742198 -
  8. scaffold_13045:393243-393266 -
  9. scaffold_13045:614586-614609 +
  10. scaffold_13082:299816-299839 +
  11. dan_1177  scaffold_13082:403267-403290 -
  12. scaffold_13230:2698502-2698525 +
  13. scaffold_13339:29073-29096 +
  14. scaffold_13339:4489018-4489041 -
star
  1. scaffold_6534:1456-1478 +
  2. scaffold_10061:3167-3189 -
  3. scaffold_12721:1870-1892 +
  4. scaffold_12905:306386-306408 +
  5. scaffold_12926:13335-13357 -
  6. scaffold_12947:682273-682295 -
  7. scaffold_13010:321196-321218 +
  8. scaffold_13034:742305-742327 -
  9. scaffold_13045:393347-393369 -
  10. scaffold_13045:614483-614505 +
  11. dan_1177  scaffold_13082:403371-403393 -
  12. scaffold_13230:2698399-2698421 +
  13. scaffold_13339:28970-28992 +
  14. scaffold_13339:605007-605029 +
  15. scaffold_13339:4489122-4489144 -
  16. scaffold_13756:101385-101407 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTACCGCCGGACTTCTACGACAGCTATAACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTTTTTTATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACTAAAAATGTATTCTTTAATATACACTATGGCCCAACGTTGCCCACAAGCAACATCCGGTAGCGCCCAAACTAGTGGGGGTGGGGAGTTCAAACTTTACTCAA
***************************************************************((((......))))(((((.(((.(((((....))))))))....(((((........(((........)))....................(((((........))))).)))))......)))))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body
.....................AGCTATAACAGGAACCCCAATGT............................................................................................................................................................................................................... 23 0 11 0.36 4 2 2 0 0
......................................................................................................................................................................ATATACACTATGGCCCAACGTTGC............................................................. 24 0 14 0.36 5 3 1 1 0
........................TATAACAGGAACCCCAATGTCAAAAT......................................................................................................................................................................................................... 26 0 11 0.18 2 0 2 0 0
.................................................................................................................................................................................................CAAGCAACATCCGGTAGCGCCCAAAC................................ 26 0 12 0.17 2 1 1 0 0
......................................................................................................................................................................AGATACACTATGGCCCAACGTTGC............................................................. 24 1 14 0.14 2 0 2 0 0
......................................................................................................................................................................ATATACACTATGGCCCAACGTTG.............................................................. 23 0 14 0.14 2 2 0 0 0
...............................................................AGTACACCTATGCTGTAACAACA..................................................................................................................................................................... 23 0 16 0.13 2 2 0 0 0
................................................................................................................................TAAACAAAAATAACCATCAACTAAAAATG.............................................................................................. 29 0 10 0.10 1 0 1 0 0
.......................CTATAACAGGAACCCCAATGTC.............................................................................................................................................................................................................. 22 0 11 0.09 1 0 1 0 0
......................................................................................................................................................................................................AACATCCGGTAGCGCCCAAACTAGT............................ 25 0 11 0.09 1 0 1 0 0
.......................................................................................................................................................................................................ACATCCGGTAGCGCCCAAACTAGTGG.......................... 26 0 11 0.09 1 1 0 0 0
.................................................................................................................................................................................................CAAGCAACATCCGGTAGCGCCCAAACTA.............................. 28 0 11 0.09 1 0 1 0 0
.......CGGACTTCTACGACAGCTATAACA............................................................................................................................................................................................................................ 24 0 11 0.09 1 1 0 0 0
..........................TAACAGGAACCCCAATGTCAAAA.......................................................................................................................................................................................................... 23 0 11 0.09 1 1 0 0 0
.....................AGCTATAACAGGAACCCCAATGTCAA............................................................................................................................................................................................................ 26 0 11 0.09 1 1 0 0 0
.....................AGCTACAACAGGAACCCC.................................................................................................................................................................................................................... 18 1 11 0.09 1 0 0 1 0
........................TATAACAGGAACCCCAATGTCAAAATG........................................................................................................................................................................................................ 27 0 11 0.09 1 1 0 0 0
.....................AGCTATAACAGGAACCCCAATGTC.............................................................................................................................................................................................................. 24 0 11 0.09 1 1 0 0 0
.....................AGCTATAACAGGAACCCCAATGC............................................................................................................................................................................................................... 23 1 11 0.09 1 0 1 0 0
.............................................................................................................................................................................................GCAACAAGCAACATCCGGTAGCGCCC.................................... 26 2 11 0.09 1 0 1 0 0
........................................................................................................................................................................................................CATCCGGTAGCGCCCAAACTAGTGG.......................... 25 0 11 0.09 1 1 0 0 0
.....................AGCTATAACAGGAACCCCAATGTCAAA........................................................................................................................................................................................................... 27 0 11 0.09 1 0 1 0 0
.......................................................................................................................................................................................................ACATCCGGTAGCGCCCAAACTAG............................. 23 0 11 0.09 1 0 0 1 0
......................GCTATAACAGGAACCCCAATGTCAAT........................................................................................................................................................................................................... 26 1 11 0.09 1 1 0 0 0
..........................................................................................................................................................................................................TCCGGTAGCGCCCAAACTAGTGGGGGT...................... 27 0 11 0.09 1 1 0 0 0
..................GACAGCTATAACAGGAACCCCAA.................................................................................................................................................................................................................. 23 0 11 0.09 1 1 0 0 0
...............................................................................................................................................................................................CACAAGCAACATCCGGTAGCGCCCAAA................................. 27 0 12 0.08 1 1 0 0 0
.......................................................................................................................................................................TATACACTATGGCCCAACGTTGCCCA.......................................................... 26 0 13 0.08 1 1 0 0 0
.........................................................................................................................................................................TACACTATGGCCCAACGTTGCCCACAAG...................................................... 28 0 13 0.08 1 1 0 0 0
......................................................................................................................................................................ATATACACGATGGCCCAACGTCGCCCA.......................................................... 27 2 13 0.08 1 1 0 0 0
.........................................................................................................................................................................TACACTATGGCCCAACGTTGCCCA.......................................................... 24 0 13 0.08 1 1 0 0 0
.......................................................................................................................................................................TATACACTATGGCCCAACGTTGCCCAC......................................................... 27 0 13 0.08 1 0 1 0 0
......................................................................................................................................................................ATATACACTATGGCCCAACGTTGCC............................................................ 25 0 13 0.08 1 0 1 0 0
...........................................................................................................................................................................CACTATGGCCCAACGTTGCCC........................................................... 21 0 13 0.08 1 1 0 0 0
..................................................................................................................................................................TTTAATATACACTATGGCCCAACGTTG.............................................................. 27 0 14 0.07 1 1 0 0 0
.........................................................................................................................................................AATGTATTCTTTAATATACACTATTGCCC..................................................................... 29 1 14 0.07 1 0 1 0 0
........................................................................................................................................................................ATACACTATGGCCCAACGT................................................................ 19 0 14 0.07 1 0 1 0 0
.............................................................................................................................................................TATTCTTTAATATACTCTATGGCCC..................................................................... 25 1 14 0.07 1 0 1 0 0
...............................................................................................................................................................................................................TAGCGCCGAGACTAGTTGGGG....................... 21 3 14 0.07 1 0 0 0 1
..........................................................................................................TACCATACTTAAAAATTGAAAATAAAC...................................................................................................................... 27 0 14 0.07 1 0 1 0 0
......................................................................................................................................................................ATATATACTATGGCCCAACGTTG.............................................................. 23 1 14 0.07 1 1 0 0 0
............................................................................................................CCATACTTAAAAATTGAAAATAAAC...................................................................................................................... 25 0 16 0.06 1 0 1 0 0
.........................................................ATGTAAAGTACACCTATGCTGTAAC......................................................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
.......................................................................................................................AATTGAAGCTAAACAAAAAT................................................................................................................ 20 2 20 0.05 1 0 1 0 0
.................................................................................................................................................................................................................................GGGTGGGAAGTTCAAACA........ 18 2 20 0.05 1 0 1 0 0

Anti-sense strand reads

CATGGCGGCCTGAAGATGCTGTCGATATTGTCCTTGGGGTTACAGTTTTACATAATTTACATTTCATGTGGATACGACATTGTTGTTATTTTTGAAAAAATACAGAATGGTATGAATTTTTAACTTTTATTTGTTTTTATTGGTAGTTGATTTTTACATAAGAAATTATATGTGATACCGGGTTGCAACGGGTGTTCGTTGTAGGCCATCGCGGGTTTGATCACCCCCACCCCTCAAGTTTGAAATGAGTT
*************************************************************((((......))))(((((.(((.(((((....))))))))....(((((........(((........)))....................(((((........))))).)))))......)))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body
......GGCCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 25 0 11 1.64 18 13 1 4 0 0
................................................................................................................................................................................................................................CCCCACCCCTCAAGTTTGAAATGAGT. 26 0 15 1.07 16 13 3 0 0 0
.....CGGCCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 26 0 11 0.91 10 7 3 0 0 0
.......GCCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 24 0 11 0.45 5 3 1 1 0 0
..........................................................................................................................................................................................................................GATCACCCCCACCCCTCAAGTTTGAA....... 26 0 14 0.43 6 6 0 0 0 0
....GCGGCCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 27 0 11 0.36 4 4 0 0 0 0
............................................................................................................................................................................................................................TCACCCCCACCCCTCAAGTTTGAAAT..... 26 0 15 0.33 5 5 0 0 0 0
............................TGTCCTTGGGGTTACAGTTTTACAT...................................................................................................................................................................................................... 25 0 13 0.31 4 3 1 0 0 0
........................................................................................................................................................................................................................TTGATCACCCCCACCCCTCAAGTTTGAA....... 28 0 14 0.29 4 4 0 0 0 0
...GGCGGCCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 28 0 11 0.27 3 3 0 0 0 0
.....CGGCCTGAAGATGCTGTCGATAT............................................................................................................................................................................................................................... 23 0 11 0.27 3 1 2 0 0 0
....................................................................................................................................................................................................CGTTGTAGGCCATCGCGGGTTTGAT.............................. 25 0 11 0.27 3 2 0 0 1 0
....GCGGCCTGAAGATGCTGTCGATAT............................................................................................................................................................................................................................... 24 0 11 0.27 3 2 0 1 0 0
..........TGAAGATGCTGTCGATATTGTCCTT........................................................................................................................................................................................................................ 25 0 12 0.25 3 3 0 0 0 0
................................................................................................................................................................................................TGTTCGTTGTAGGCCATCGCGGGTTT................................. 26 0 12 0.25 3 2 1 0 0 0
.........CTGAAGATGCTGTCGATATTGTCCT......................................................................................................................................................................................................................... 25 0 13 0.23 3 2 1 0 0 0
..........................................................................................................................................................................................................................GATCACCCCCACCCCTCAAGTTTGAAAT..... 28 0 14 0.21 3 2 1 0 0 0
......GGCCTGAAGATGCTGTCGATATTGTCCTT........................................................................................................................................................................................................................ 29 0 10 0.20 2 2 0 0 0 0
.................................................................................................................................................................................................................................CCCACCCCTCAAGTTTGAAATGAGT. 25 0 15 0.20 3 1 2 0 0 0
......................................................................................................................................................................................................TTGTAGGCCATCGCGGGTTTGATCAC........................... 26 0 11 0.18 2 2 0 0 0 0
......GGCCTGAAGATGCTGTCGATATTGTCC.......................................................................................................................................................................................................................... 27 0 11 0.18 2 2 0 0 0 0
.........................................................................................................................................................................................................TAGGCCATCGCGGGTTTGATCAC........................... 23 0 11 0.18 2 1 1 0 0 0
........CCTGAAGATGCTGTCGATATTGTCC.......................................................................................................................................................................................................................... 25 0 11 0.18 2 2 0 0 0 0
........................................................................................................................................................................................................GTAGGCCATCGCGGGTTTGATCAC........................... 24 0 11 0.18 2 2 0 0 0 0
........CCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 23 0 11 0.18 2 2 0 0 0 0
.................................................................................................................................................................................................GTTCGTTGTAGGCCATCGCGGGT................................... 23 0 12 0.17 2 2 0 0 0 0
................................CTTGGGGTTACAGTTTTACATAAT................................................................................................................................................................................................... 24 0 13 0.15 2 1 1 0 0 0
..........TGAAGATGCTGTCGATATTGTCCT......................................................................................................................................................................................................................... 24 0 13 0.15 2 1 1 0 0 0
...............................CCTTGGGGTTACAGTTTTACATAAT................................................................................................................................................................................................... 25 0 13 0.15 2 2 0 0 0 0
..............................................................................................AAAAAAGAAAGAATGGTATGAAG...................................................................................................................................... 23 3 7 0.14 1 0 1 0 0 0
...........................................................................................................................................................................................................................ATCACCCCCACCCCTCAAGTTTGAAAT..... 27 0 14 0.14 2 2 0 0 0 0
...........................................................................................................................................................................................................................ATCACCCCCACCCCTCAAGTTTGAA....... 25 0 14 0.14 2 2 0 0 0 0
.............................................................................................................................................................................................................................CACCCCCACCCCTCAAGTTTGAAAT..... 25 0 15 0.13 2 2 0 0 0 0
................................................................................................................................................................................................................................CCCCACCCCTCAAGTTTGAAATGATT. 26 1 15 0.13 2 0 2 0 0 0
...............................................................................................................................................................................................................................CCCCCACCCCTCAAGTTTGAAATGAGT. 27 0 15 0.13 2 1 1 0 0 0
................................................................................................................................................................................................................................CCCCACCCCTCAAGTTTGAAATGAGTT 27 0 15 0.13 2 1 1 0 0 0
..................................................................................................................................................................................................................................CCACCCCTCAAGTTTGAAATGAGT. 24 0 15 0.13 2 2 0 0 0 0
................................................................................................................................................................................................................................CCCCACCCCTCAAGTTTGAAATGAG.. 25 0 15 0.13 2 2 0 0 0 0
...............................................................TCATGTGGATACGACATTGTTGTTAT.................................................................................................................................................................. 26 0 16 0.13 2 2 0 0 0 0
........................................................TTACATTTCATGTGGATACGACATTGT........................................................................................................................................................................ 27 0 16 0.13 2 2 0 0 0 0
..........................................................................................................................................ATTGGTAGTTGATTTTTACATAAGAAAT..................................................................................... 28 0 9 0.11 1 1 0 0 0 0
............................................................................................................................................TGGTAGTTGATTTTTACATAAGAAAT..................................................................................... 26 0 9 0.11 1 1 0 0 0 0
........................................................................................................................................................................................GCAACGGGTGTTCGTTGTAGGCCAT.......................................... 25 0 10 0.10 1 1 0 0 0 0
......................................................................................................................................................................................TTGCACGGGGTGTTCGTTGTAGGCCAT.......................................... 27 2 10 0.10 1 0 0 1 0 0
.......GCCTGAAGATGCTGTCGATATTGTCCTT........................................................................................................................................................................................................................ 28 0 10 0.10 1 1 0 0 0 0
.......................................................................................................................................................................................TGCAACGGGTGTTCGTTGTAGGCCAT.......................................... 26 0 10 0.10 1 0 1 0 0 0
.....................................................................................................................................................................................GTTGCAACGGGTGTTCGTTGTAGGCCAT.......................................... 28 0 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................................TGCGATCCCGGTTTGCAAC.............................................................. 19 3 20 0.10 2 1 0 0 0 1
CATGGCGGCCTGAAGATGCT....................................................................................................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0 0
..........................ATTGTCCTTGGGGTTACAGTTTTACAT...................................................................................................................................................................................................... 27 0 10 0.10 1 1 0 0 0 0
..............................................................................................................................TTATTTGTTTTTATTGGTAGTTGAT.................................................................................................... 25 0 10 0.10 1 1 0 0 0 0
........CCTGAAGATGCTGTCGATATTGTCCTT........................................................................................................................................................................................................................ 27 0 10 0.10 1 1 0 0 0 0
.....CGGCCTGAAGATGCTGTCGAT................................................................................................................................................................................................................................. 21 0 11 0.09 1 0 1 0 0 0
......................CGATATTGTCCTTGGGGTTACATT............................................................................................................................................................................................................. 24 1 11 0.09 1 0 1 0 0 0
..............................................................................................................................................................................................GGTGTTCGTTGTAGGCCATCGCGGGT................................... 26 0 11 0.09 1 1 0 0 0 0
..........................................................................................................................................................................................AACTGGTGTTCGTTGTAGGCCAT.......................................... 23 1 11 0.09 1 0 1 0 0 0
..............................................................................................................................................................................................GGTGTTCGTTGTAGGCCATCGCGGGTT.................................. 27 0 11 0.09 1 1 0 0 0 0
...GGCGGCCTGAAGATGCTGTCGATAT............................................................................................................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0
.....................................................................................................................................................................................................GTTGTAGGCCATCGCGGGTTTGAT.............................. 24 0 11 0.09 1 1 0 0 0 0
............................................................................................................................................................................................CGGGTGTTCGTTGTAGGCCATCGCGGGT................................... 28 0 11 0.09 1 1 0 0 0 0
.............................................................................................................................................................................................GGGTGTTCGTTGTAGGCCAT.......................................... 20 0 11 0.09 1 1 0 0 0 0
............................................................................................................................................................................................CAGGTGTTCGTTGTAGGCCATCTC....................................... 24 2 11 0.09 1 0 1 0 0 0
.......................GATATTGTCCTTGGGGTTACAGTTTT.......................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
.........................................................................................................................................................................................CAACGGGTGTTCGTTGTAGGCCAT.......................................... 24 0 11 0.09 1 0 1 0 0 0
............................................................................................................................................................................................CGGGTGTTCGTTGTAGGCCATCGCGGG.................................... 27 0 11 0.09 1 1 0 0 0 0
.......GCCTGAAGATGCTGTCGATATTGTCC.......................................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
........CCTGAAGATGCTGACGATATTG............................................................................................................................................................................................................................. 22 1 11 0.09 1 1 0 0 0 0
......GGCCTGAAGATGCTGTCGATATTGTCCT......................................................................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0
...................................................................................................................................................................................................TCGTTGTAGGCCATCGCGGGTTTGAT.............................. 26 0 11 0.09 1 1 0 0 0 0
..................................................................................................................................................................................................TTCGTTGTAGGCCATCGCGGGTTTGA............................... 26 0 11 0.09 1 1 0 0 0 0
........CCTGAAGATTCTGTCGATATTGT............................................................................................................................................................................................................................ 23 1 11 0.09 1 0 1 0 0 0
.....CGGCCTGAAGATGCTGTCGATATTTT............................................................................................................................................................................................................................ 26 1 11 0.09 1 1 0 0 0 0
....................GTCGATATTGTCCTTGGGGTTACAGTT............................................................................................................................................................................................................ 27 0 11 0.09 1 1 0 0 0 0
...GGCGGCCTGAAGATGCTGTAGATATTGT............................................................................................................................................................................................................................ 28 1 11 0.09 1 1 0 0 0 0
........................................................................................................................................................................................................GTAGGCCATCGCGGGTTTGATCACCC......................... 26 0 11 0.09 1 1 0 0 0 0
.....CGGCCTGAAGATGCGGTCGATAT............................................................................................................................................................................................................................... 23 1 11 0.09 1 1 0 0 0 0
.............................................................................................................................................................................................GGGTGTTCGTTGTAGGCCATCGCGGGTT.................................. 28 0 11 0.09 1 1 0 0 0 0
.......................................................................................................................................................................................................TGTAGGCCATCGCGGGTTTGAT.............................. 22 0 11 0.09 1 1 0 0 0 0
.......GCCTGAAGATGCTGTGGATATTGT............................................................................................................................................................................................................................ 24 1 11 0.09 1 1 0 0 0 0
..................CTGTCGATATTGTCCTTGGGGTTACAG.............................................................................................................................................................................................................. 27 0 11 0.09 1 1 0 0 0 0
..............GATGCTGTCGATATTGTCCTTGGGGT................................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
...GGCGGCCTGAAGATGCTGTCGATATTG............................................................................................................................................................................................................................. 27 0 11 0.09 1 1 0 0 0 0
...GGCGGCCTGAAGATGCTGTCGAT................................................................................................................................................................................................................................. 23 0 11 0.09 1 0 0 1 0 0
.............................................................................................................................................................................................GGGTGTTCGTTGTAGGCCATCGCGGGTC.................................. 28 1 11 0.09 1 1 0 0 0 0
....................TTCGATATTGTCCTTGGGGTTACAGT............................................................................................................................................................................................................. 26 1 11 0.09 1 1 0 0 0 0
......GGCCTGAAGATGCTGTCGATATCGT............................................................................................................................................................................................................................ 25 1 11 0.09 1 0 1 0 0 0
.......................................................................................................................................................................................................TGTAGGCCATCGCGGGTTTGATCAC........................... 25 0 11 0.09 1 1 0 0 0 0
......TGCCTGAAGATGCTGTCGATATTGT............................................................................................................................................................................................................................ 25 1 11 0.09 1 0 1 0 0 0
.....................TCGATATTGTCCTTGGGGTTACAGTTTT.......................................................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0
............................................................................................................................................................................................CGGGTGTTCGTTGTAGGCCAT.......................................... 21 0 11 0.09 1 1 0 0 0 0
.........................TATTGTCCTTGGGGTTACAGTTTT.......................................................................................................................................................................................................... 24 0 11 0.09 1 0 0 1 0 0
...................TGTCAATATTGTCCTTGGGGTTACAG.............................................................................................................................................................................................................. 26 1 11 0.09 1 1 0 0 0 0
.....CGGCCTGAAGATGCTGTCGATATTG............................................................................................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0
...........................TTGTCCTTGGGGTTACAGTTTTACA....................................................................................................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0
...................................................................................................................................................................................................TCGTTGTAGGCCATCGCGGGTTT................................. 23 0 12 0.08 1 0 1 0 0 0
...............................................................................................................................................................................................GTGTTCGTTGTAGGCCATCGCGGGTTT................................. 27 0 12 0.08 1 1 0 0 0 0
...............................................................................................................................................................................................GTGTTCGTTGTAGGCCATCGCGGGTT.................................. 26 0 12 0.08 1 0 1 0 0 0
....................................................................................................................................................................................................CGTTGTAGGCCATCGCGGGTTT................................. 22 0 12 0.08 1 1 0 0 0 0
.................................................................................................................................................................................................GTTCGTTGTAGGCCATCGCGGGTT.................................. 24 0 12 0.08 1 1 0 0 0 0
................................................................................................................................................................................................TGTTCGTTGTAGGCCATCGCGGGTT.................................. 25 0 12 0.08 1 0 1 0 0 0
....................................................................................................................................................................................................CGTTGTAGGCCATCGCGGGTTTG................................ 23 0 12 0.08 1 1 0 0 0 0
.............................................................................................................................................................................GATACCGGGTTGCAACGGGTGTTC...................................................... 24 0 13 0.08 1 1 0 0 0 0
............................CGTCCTTGGGGTTACAGTTTTACAT...................................................................................................................................................................................................... 25 1 13 0.08 1 0 1 0 0 0
.................................................................................................................................................................................CCGGGTTGCAACGGGTGTTCG..................................................... 21 0 13 0.08 1 0 0 0 1 0
..............................................................................................................................................................................ATACCGGGTTGCAACGGGTGTTCGT.................................................... 25 0 13 0.08 1 1 0 0 0 0
..............................................................................................................................................................................................................CATCGCGGGTTTGATCACCCCCACCCCTC................ 29 0 13 0.08 1 1 0 0 0 0
............................TGTCCTTGGGGTTACAGTTTTACATAAT................................................................................................................................................................................................... 28 0 13 0.08 1 0 1 0 0 0
................................................................................................................................................................................ACCGGGTTGCAACGGGTGTTCGT.................................................... 23 0 13 0.08 1 1 0 0 0 0
.............................GTCCTTGGGGTTACAGTTTTACATAAT................................................................................................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0
..................................................................................................................................................................................CGGGTTGCAACGGGTGTTCGT.................................................... 21 0 13 0.08 1 1 0 0 0 0
...........GAAGATGCTGTCGATATTG............................................................................................................................................................................................................................. 19 0 13 0.08 1 0 1 0 0 0
................................CTTGGGGTTACAGTTTTACAT...................................................................................................................................................................................................... 21 0 13 0.08 1 1 0 0 0 0
...............................CCTTGGGGTTACAGTTTTACAT...................................................................................................................................................................................................... 22 0 13 0.08 1 1 0 0 0 0
..................................TGGGGTTACAGTTTTACATAATT.................................................................................................................................................................................................. 23 0 13 0.08 1 0 1 0 0 0
............................TGTCCTTGGGGTTACAGTTTTAC........................................................................................................................................................................................................ 23 0 14 0.07 1 1 0 0 0 0
....................................GGGTTACAGTTTTACATAATTTACAT............................................................................................................................................................................................. 26 0 14 0.07 1 0 1 0 0 0
..........................................................................................................................................................................................................................GATCGCCCCCACCCCTCAAGTTTGAA....... 26 1 14 0.07 1 1 0 0 0 0
....................................GGGTTACAGTTTTACATAATTT................................................................................................................................................................................................. 22 0 14 0.07 1 1 0 0 0 0
........................................................................................................................................................................................................................TTGATCACCCCCACCCCTCAAGTTTGA........ 27 0 14 0.07 1 1 0 0 0 0
..........................................................................................................................................................................................................................CAGCACCCCCACCCCTCAAGTTTGAA....... 26 2 14 0.07 1 1 0 0 0 0
.........................................................................................................................................................................................................................TGATCACCCCCACCCCTCAAGTTTGAA....... 27 0 14 0.07 1 1 0 0 0 0
.............................................................................................................................................................................................................................CACCCCCGCCCCTCAAGTTTGAAATGAGT. 29 1 15 0.07 1 1 0 0 0 0
.....................................................AATTTACATTTCATGTGGATACGACAT........................................................................................................................................................................... 27 0 15 0.07 1 1 0 0 0 0
......................................................................................................................................................................................................................GTTTGATCACCCCCACCCCTCAAGT............ 25 0 15 0.07 1 1 0 0 0 0
................................................................................................................................................................................................................................CCCCACCCCTCAAGTTTGAAATTAGT. 26 1 15 0.07 1 0 1 0 0 0
............................................................................................................................................................................................................................TCACCCCCACCCCTCAAGTTTGAAA...... 25 0 15 0.07 1 1 0 0 0 0
....................................................................................................................................................................................................................................ACCCCTCAAGTTTGAAATGAGT. 22 0 15 0.07 1 1 0 0 0 0
..............................................................................................................................................................................................................................AACCCCACCCCTCAAGTTTGAAATGAGTT 29 1 15 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................................CCACCCCTCAAGTTTGAAATGAGTT 25 0 15 0.07 1 0 1 0 0 0
.....................................................................................................................................................................................................................GGTTTGATCACCCCCACCCCTCAAGT............ 26 0 15 0.07 1 1 0 0 0 0
.....................................................................................................................................................................................................................GGTTTGATCACCCCCACCCCTCAAGTTT.......... 28 0 15 0.07 1 1 0 0 0 0
.................................................................................................................................................................................................................CGCGGGTTTGATCACCCCCGCCCCTCAA.............. 28 1 15 0.07 1 1 0 0 0 0
.............................................................................................................................................................................................................................CACCCCCACCCCTCAAGTTTGAA....... 23 0 15 0.07 1 0 1 0 0 0
...............................................................................................................................................................................................................................CCCCCACCCCTCAAGTTTGAAATGAG.. 26 0 15 0.07 1 0 1 0 0 0
................................................................................................................................................................................................................................CCCCACCCCTCAAGTTTGGAATGAGTT 27 1 15 0.07 1 1 0 0 0 0
.............................................................................................................................................................................................................................CACCCCCACCCCTCAAGTTTGAAATGAGT. 29 0 15 0.07 1 1 0 0 0 0
..............................................................TTCATGTGGATACGACATTGTTGTTATT................................................................................................................................................................. 28 0 16 0.06 1 1 0 0 0 0
..............................................................TTCATGTGGATACGATATTGTTGT..................................................................................................................................................................... 24 1 16 0.06 1 1 0 0 0 0
..............................................................TTCATGTGGATACGACATTGTTGT..................................................................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0
.................................................................ATGTGGATACGACATTGTTGTTATTG................................................................................................................................................................ 26 1 16 0.06 1 1 0 0 0 0
...............................................................TCATGTGGATACGACATTGTTGTT.................................................................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0
........................................................TTACATTTCATGTGGATACGACATTG......................................................................................................................................................................... 26 0 16 0.06 1 0 1 0 0 0
............................................................ATTTCATGTGGATACGACATTGT........................................................................................................................................................................ 23 0 16 0.06 1 0 0 1 0 0
.................................................................................................................................................................................TTGGGTTGCAACGGGTGT........................................................ 18 2 18 0.06 1 1 0 0 0 0
..................................................................................................................................................................................................................................CCACCCCCCAATTTTGAAA...... 19 2 19 0.05 1 0 1 0 0 0
............................................................................................................................................................................................CGGGTTTTCGGTGTAGGC............................................. 18 2 20 0.05 1 1 0 0 0 0
...............ATGGTGTCAATATGGTCCT......................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
...........................................................................................................TGGTATGAATTTTTGACA.............................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................CCCACCCCTCGAGATAGAA....... 19 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13082:403206-403456 - dan_1177 GTA----CCGCCGGACTTCTACGACAGCTATAACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTTTTTT-ATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGGCCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAA
droBip1 scf7180000396519:4635-4861 - TAA----------------------------GACAGGAACTCCATTGTCAAAATTTATTAAATGTAAAGTACACCTATGCTGCAACAACAATAAAAACTGTTTT-TTATCTTACCACACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------CAAAG-TTTATTCTTTAATACA-CACCATTGCCCAACGTTGCCCACAAGCA-ACTTCCGGTAGCGCCCAAAATAGTGGGC---GTGGGGACTTCAAATTT--TA-CTCAA
droKik1 scf7180000302287:3284-3387 - TAA--------------------------------------CTAATAACCAGGTGAGTAATTTTCAAA-----------------------------------------------------------------------------------------------------------------------------------------GTTCTAAAGTTGCCCACAAGCA-ACTTCCGGTAGCTCCCAAACCTATGGGT---GTGGCGACTCGAAATTT--TT-ACCAA
droFic1 scf7180000454180:6788-7011 + AC--------------------------------AGGTACTCCAATGTCAAAATGCATTAAATGTAAAGTCCACCTTTGCTGCAACAACAATAAAAACTGTTTT-ATAAGTTACCATACTTAAATTTTTAAAATAAATGAAGTTAACTGCCACCT---------------------AAATA-TTTTTCTTTTAGTTTACCACCACTGCCCAACGTTGCTCACAAGCA-ACTTCCGGTAGCGCCAAAACTAGTGGGC---GTGGCGCCTTAAAATTT--GG-CTCAA
droEle1 scf7180000491087:73809-74035 - TAA----------------------------GACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTGTTTT-ATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGGCCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAA
droRho1 scf7180000773219:13-176 - ------------------------------------------------------------------------------------------ATAAAAACTGTTTT-ATAAGTTACCATAGTTAAATTTTAAAAATAAATGAAATTAACTATCACCT---------------------AAAGA-T-TTTTCTTTAGTTTACCACCACTGCCCAACGTTGCTCACAAGCA-ACTTCCGGTAGCGCCAAAACTAGTG-GC---GTGGCGAATTAAAATTT--TG-CTAAA
droBia1 scf7180000302432:909773-909800 + GTG----CCGCCGGACTTCTACGACAGCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droTak1 scf7180000413729:102-328 - TAA----------------------------GACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTGTTTT-ATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGGCCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAA
droEug1 scf7180000409387:749-975 - TAA----------------------------GACAGGAACCCCAATGTCAAAATGTATTCAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTGTTTT-ATATCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGACCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAA
dm3 chr2R:2354125-2354376 + GCAGACTGTGCAA------------------AACTGCAACACCGATGACCAAATGCCTTACATGCAAAGTCCATCTGTGCTGCAATAACAATAAAAACTGTTTTTTTGTCATACCACACTTAAATTGTCATTATAAAGAAAAATATTTCATA---TTCTGTGATTTATAAAAAAAAAACAAT-G----C--TTACACATCACTACTGCCCGACGTTGCTCACAAGAAAACTTTCGCTACCGCCCAAACTAATGGGC---GTGGCATACTAAAATTT--TG-CTAAA
droSim2 2l:22766809-22767057 + GCAGA--CTGCAA------------------AACTGCAACACCGATGACCAAATGCATTAAAAGCAAAGTCCATCTGTGCTGCAATAACAATAAAAACTGTTTT--TGTCATACCACACGTAAATTGTCATTATAAACAAAAATATTTCATA---TTCTGTGAATTAAAA--AAAAAAAAAT-A----C--TTACACACCACTACTGCCC-ACGTTGCTCACAAGCA-ACTTTCGCTACCGCCAAAACTAATGGGCTCCCTGGCATACTAAAATTTGTTG-CTAAA
droSec2 scaffold_83:70061-70307 + GCAGACTGTGCAA------------------AACTGCAACACCGATGACCAAATGCATTAAAAGCAAAGTCCATCTGTGCTGCAATAACAATAAAAACTGTTTT-TTGTCATACCACGCTTAAATTGTTATA--AAAAAAAAATATTTCATA---TTCTGTGAATTATAA--AA-AAACAAT-G----C--TTACACACCACTACTGCCCAACGTTGCTCACAAGCA-ACTTTCGCTACCGCCCAAACTAATGGGC---GTAGCATACTAAAATTTGTTG-CTAAA
droYak3 v2_chrUn_127:89985-90225 - GCAGGCTGTGCAA------------------AACTGCAACAGCGATGACTAAATGCCTTAGATGCAAAATCCATCTGTGCTGCAATAATAAAAAAAAATGTTTT-TTGTCATACCACTCTTAAATTGTCATTATAAATAAAAATGTTTCTTA---TCCTGCGAATTATGA--AA-AAACAAT-G----C--TTATACACTATTATTGTCCAACGTTCCTCACAAGCA-ACTATCGGTACGGCCCAAACTAGTTGGC---A-----TACCAAAATT---TA-TTGCT
droEre2 scaffold_4784:24790598-24790822 + TAG----------------------------AACAGGAACACCAATATCCAAATTAATTAAATGCAATGTCCATCTTTGCTGGAACAACAACAAAAACTGTTTT-TTGTCATACCATACCTAATTTTCAAAATGATATAGAAATAATTGTCAACT---TTTC--------------AAAGATTTTTTTATTTTATGTACCAGTTTGGCCCAAAGTTGC--ACAAGTA-TATTTCGGAAGCTCCCAAACCGATAGGC---G-----ACTCAACATT---CT-TACCC
dp5 XL_group3a:290490-290517 - GTG----CCACCGGACTTCTATGACAACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droPer2 scaffold_39:440719-440746 + GTG----CCACCGGACTTCTATGACAACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droWil2 scf2_1100000006046:155-403 + GCAAATTCTGCAA------------------GACTGCGACACCAATGTCCAAATGCCGTAAATGTAAAGTCAACCTTTGTTGTAATAACAACAAAAACTGTTTT-TTGACTTTTCATACCTTATTATTTGAAATCAATAAAAATCATTTAAA---GTTGTTGA------A--AA-AAAAAATTTCTTTGTTTTGTATACCACCATGGCCCAATGTTGCTCACAAGCA-ACTTTCCGTAGCCCCCAAACCGGTGGGC---GTGGCGACTTAAAATTT--TGTCCTAA
droVir3 scaffold_13049:24779184-24779419 + AC--------------------------------AGGAACACCATTGTCCAAATGCTTTAAATGCAAAGTCCATCTTTGCTGTAATAACAATAAAAACTGTTTT-ATTTCTTTTCATAACTAATTTACTAAAATAAATAAAATTAATTTTAAGCT----G---TTTCCAA--GA-AAACAATTTTTTATATATATATACCACTATAGCCCAACGTTGCTCACAAGCA-ACTTTCTGTAGCGCCCAAACCGATGGGC---GTGGCAACCTTAAATGT--TG-GTCAA
droMoj3 scaffold_6473:6365266-6365293 + GTG----CCGCAGGACTTTTACGACAGCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droGri2 scaffold_15203:1056776-1056803 - GTG----CCGCAGGATTTTTACGACAGATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GTA----CCGCCGGACTTCTACGACAGCTATAACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTTTTTT-ATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGGCCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................AGCTATAACAGGAACCCCAATGT..............................................................................................................................................................................................................................................23110.364220000
.................................................................................................................................................................................................ATATA-CACTATGGCCCAACGTTGC....................................................................24140.365311000
............................TATAACAGGAACCCCAATGTCAAAAT........................................................................................................................................................................................................................................26110.182020000
.............................................................................................................................................................................................................................CAAGCA-ACATCCGGTAGCGCCCAAAC......................................26120.172110000
.................................................................................................................................................................................................ATATA-CACTATGGCCCAACGTTG.....................................................................23140.142200000
...................................................................AGTACACCTATGCTGTAACAACA....................................................................................................................................................................................................23160.132200000
.....................................................................................................................................TAAACAAAAATAACCATCAACT---------------------AAAAA-TG......................................................................................................29100.101010000
...........................CTATAACAGGAACCCCAATGTC.............................................................................................................................................................................................................................................22110.091010000
..................................................................................................................................................................................................................................A-ACATCCGGTAGCGCCCAAACTAGT..................................25110.091010000
....................................................................................................................................................................................................................................ACATCCGGTAGCGCCCAAACTAGTGG................................26110.091100000
.............................................................................................................................................................................................................................CAAGCA-ACATCCGGTAGCGCCCAAACTA....................................28110.091010000
...........CGGACTTCTACGACAGCTATAACA...........................................................................................................................................................................................................................................................24110.091100000
..............................TAACAGGAACCCCAATGTCAAAA.........................................................................................................................................................................................................................................23110.091100000
.........................AGCTATAACAGGAACCCCAATGTCAA...........................................................................................................................................................................................................................................26110.091100000
............................TATAACAGGAACCCCAATGTCAAAATG.......................................................................................................................................................................................................................................27110.091100000
.........................AGCTATAACAGGAACCCCAATGTC.............................................................................................................................................................................................................................................24110.091100000
.........................AGCTATAACAGGAACCCCAATGC..............................................................................................................................................................................................................................................23110.091010000
.....................................................................................................................................................................................................................................CATCCGGTAGCGCCCAAACTAGTGG................................25110.091100000
.........................AGCTATAACAGGAACCCCAATGTCAAA..........................................................................................................................................................................................................................................27110.091010000
....................................................................................................................................................................................................................................ACATCCGGTAGCGCCCAAACTAG...................................23110.091001000
..........................GCTATAACAGGAACCCCAATGTCAAT..........................................................................................................................................................................................................................................26110.091100000
.......................................................................................................................................................................................................................................TCCGGTAGCGCCCAAACTAGTGGGG---GT.........................27110.091100000
......................GACAGCTATAACAGGAACCCCAA.................................................................................................................................................................................................................................................23110.091100000
...........................................................................................................................................................................................................................CACAAGCA-ACATCCGGTAGCGCCCAAA.......................................27120.081100000
..................................................................................................................................................................................................TATA-CACTATGGCCCAACGTTGCCCA.................................................................26130.081100000
....................................................................................................................................................................................................TA-CACTATGGCCCAACGTTGCCCACAAG.............................................................28130.081100000
....................................................................................................................................................................................................TA-CACTATGGCCCAACGTTGCCCA.................................................................24130.081100000
..................................................................................................................................................................................................TATA-CACTATGGCCCAACGTTGCCCAC................................................................27130.081010000
.................................................................................................................................................................................................ATATA-CACTATGGCCCAACGTTGCC...................................................................25130.081010000
.......................................................................................................................................................................................................CACTATGGCCCAACGTTGCCC..................................................................21130.081100000
.............................................................................................................................................................................................TTTAATATA-CACTATGGCCCAACGTTG.....................................................................27140.071100000
...................................................................................................................................................................................................ATA-CACTATGGCCCAACGT.......................................................................19140.071010000
...............................................................................................................TACCATACTTAAAAATTGAAAATAAAC....................................................................................................................................................27140.071010000
.................................................................................................................CCATACTTAAAAATTGAAAATAAAC....................................................................................................................................................25160.061010000
.............................................................ATGTAAAGTACACCTATGCTGTAAC........................................................................................................................................................................................................25160.061100000
droBip1
TAA----------------------------GACAGGAACTCCATTGTCAAAATTTATTAAATGTAAAGTACACCTATGCTGCAACAACAATAAAAACTGTTTT-TTATCTTACCACACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------CAAAG-TTTATTCTTTAATACA-CACCATTGCCCAACGTTGCCCACAAGCA-ACTTCCGGTAGCGCCCAAAATAGTGGGC---GTGGGGACTTCAAATTT--TA-CTCAASizeHit CountTotal NormTotal
No Reads
droKik1
TAA--------------------------------------CTAATAACCAGGTGAGTAATTTTCAAA-----------------------------------------------------------------------------------------------------------------------------------------GTTCTAAAGTTGCCCACAAGCA-ACTTCCGGTAGCTCCCAAACCTATGGGT---GTGGCGACTCGAAATTT--TT-ACCAASizeHit CountTotal NormTotal
No Reads
droFic1
AC--------------------------------AGGTACTCCAATGTCAAAATGCATTAAATGTAAAGTCCACCTTTGCTGCAACAACAATAAAAACTGTTTT-ATAAGTTACCATACTTAAATTTTTAAAATAAATGAAGTTAACTGCCACCT---------------------AAATA-TTTTTCTTTTAGTTTACCACCACTGCCCAACGTTGCTCACAAGCA-ACTTCCGGTAGCGCCAAAACTAGTGGGC---GTGGCGCCTTAAAATTT--GG-CTCAASizeHit CountTotal NormTotal
No Reads
droEle1
TAA----------------------------GACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTGTTTT-ATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGGCCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAASizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------------------------------------------------------------------ATAAAAACTGTTTT-ATAAGTTACCATAGTTAAATTTTAAAAATAAATGAAATTAACTATCACCT---------------------AAAGA-T-TTTTCTTTAGTTTACCACCACTGCCCAACGTTGCTCACAAGCA-ACTTCCGGTAGCGCCAAAACTAGTG-GC---GTGGCGAATTAAAATTT--TG-CTAAASizeHit CountTotal NormTotal
No Reads
droBia1
GTG----CCGCCGGACTTCTACGACAGCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
TAA----------------------------GACAGGAACCCCAATGTCAAAATGTATTAAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTGTTTT-ATGTCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGGCCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAASizeHit CountTotal NormTotal
No Reads
droEug1
TAA----------------------------GACAGGAACCCCAATGTCAAAATGTATTCAATGTAAAGTACACCTATGCTGTAACAACAATAAAAACTGTTTT-ATATCTTACCATACTTAAAAATTGAAAATAAACAAAAATAACCATCAACT---------------------AAAAA-TGTATTCTTTAATATA-CACTATGACCCAACGTTGCCCACAAGCA-ACATCCGGTAGCGCCCAAACTAGTGGGG---GTGGGGAGTTCAAACTT--TA-CTCAASizeHit CountTotal NormTotal
No Reads
dm3
GCAGACTGTGCAA------------------AACTGCAACACCGATGACCAAATGCCTTACATGCAAAGTCCATCTGTGCTGCAATAACAATAAAAACTGTTTTTTTGTCATACCACACTTAAATTGTCATTATAAAGAAAAATATTTCATA---TTCTGTGATTTATAAAAAAAAAACAAT-G----C--TTACACATCACTACTGCCCGACGTTGCTCACAAGAAAACTTTCGCTACCGCCCAAACTAATGGGC---GTGGCATACTAAAATTT--TG-CTAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................TACACATCACTACTGCCCGACGTTGC....................................................................26196.0096010000000000000000000000000000000000001000001000000000000000000000000000000000000010041000000000000000000000000010040000000000000000000000010100310000110000000000000000000000000000000000001010020003000000101006140001100009011300000000011000000000000000000000000000000000000000000000000000010013070000001121000000000000000010000000
...........................................................................................................................................................................................................................................................TGGGC---GTGGCATACTAAAATTT--TG-C....25156.00560000000000000000000001000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100100000000000000000000000000000000000000000000000000001010200000300010101200000000000000000000000000000000000000000000000000000000000003000001004000000863000000000000002712000000
................................................................................................................................................................................................TACACATCACTACTGCCCGACGTTG.....................................................................25140.00400100000000000000000001000000000000000020001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100200000000000000000000000000000000000000002000000000000310200000000000011020000000000000000000000000000000000000000000000000000000000001000000233000000611000000000000000100000000
................................................................................................................................................................................................TACACATCACTACTGCCCGACGTT......................................................................24138.003800000000000000000000010000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000001000100003000000000000000000000000000000000000000000000021000000000000000401102040000000000000000000000000000000000000000000000000000000000001000001100000000200000000000000000000000000
........................................................................................................................................................................................................................................................TAATGGGC---GTGGCATACTAAAATTT--........25330.339100000000000000000000000000000000000000011000001001001000000000000000000000000000002000000000000000000000000000000000000000000000000000000000020830210001010000000000000000000000000000000000000102000400000010400020000000130515490000000000100000000000000000000000000000000000000000000000000000000102000000100000000000000003151000000
.....................................................................................................................................................................TATAAAAAAAAAACAAT-G----C--TTACACA........................................................................................26130.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000801801120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CACATCACTACTGCCCGACGTTGC....................................................................24127.00270000000000000000000000000000000000000000000010000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000100000000000000000000000000000000000000000000000000001000000000000000500000000000000000000000000000000000000000000000000000000000000003000000000000000700000000000000000000000000
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...............................................................................................AACTGTTTTTTTGTCATACCACACT......................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TAACAATAAAAACTGTTTTTTTGT.................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................ACATCACTACTGCCCGACGTT......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AAAAACAAT-G----C--TTACACATCACTAC.................................................................................2512.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................ACAAT-G----C--TTACACATCACTACTGCCC............................................................................2612.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TGGGC---GTGGCATACTAAAATTT--TG-CTA..2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
...............................................................................................................................................................................................................CCCGACGTTGCTCACAAGAAAACTTTT....................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AACACCGATGACCAAATGCCTTACA................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TTGCTCACAAGAAAACT.......................................................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TGTGATTTATAAAAAAAAAACAAT-G----C--T..............................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CTACTGCCCGACGTTGCTCA.................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000
..................................................................................................................................TTATAAAGAAAAATATTTCATA---TTCTG..............................................................................................................................2742.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030400010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAAAAAAAAAACAAT-G----C--TTACACA........................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGTTTTTTTGTCATACCACACTTA....................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CCGATGACCAAATGCCTTACATGCAAA..........................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TCACAAGAAAACTTTCGCTACCGCCC..........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TAAAAACTGTTTTTTTGTCATACCA..........................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................CCATCTGTGCTGCAATAACAATAAAAAC............................................................................................................................................................................................2822.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TGTGATTTATAAAAAAAAAAC...........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATGACCAAATGCCTTACATGC.............................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GATTTATAAAAAAAAAACAAT-G----C--TTA............................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................ATCACTACTGCCCGACGTT......................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CTAATGGGC---GTGGCATACTT................2032.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TACATGCAAAGTCCATCT..................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACTAATGGGC---GTGGCATACTA................2132.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000020000000000000000101000000000000000000000000000000000
........................................................................................................................................................................................................................................TCGCTACCGCCCAAACTAATGGGC---GTG........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CCCGACGTTGCTCACAAGAAAACT.......................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATA---TTCTGTGATTTATAAAAA.................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGTTTTTTTGTCATACCACACT......................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TAATGGGC---GTGGCATACTAAA..............2132.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000010000000000000000011000000000000000000000001000000000
..............................................................................................................................................................TGTGATTTATAAAAAAAAAACAAT-G----C--TTA............................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TACACATCACTACTGCCCGACG........................................................................2212.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................GACCAAATGCCTTACATGCAAAGTC.......................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C--TTACACATCACTACTGCCCGACG........................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CCAAACTAATGGGC---GTGGCATACTAAAA.............2822.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................TTGCTCACAAGAAAACTTTCGCTACCG.............................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGCAACACCGATGACCAAATG.......................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000
.............................................TGACCAAATGCCTTACATGCAAAGT........................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAACACCGATGACCAAATGCCTTACATG..............................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ACACATCACTACTGCCCGACGTTG.....................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................TTATAAAGAAAAATATTTCATA---TT.................................................................................................................................2441.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CTAATGGGC---GTGGCATACTAAAATTT--........2631.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................AACTAATGGGC---GTGGCATACTAAAA.............2531.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CAAACTAATGGGC---GTGGCATACTAA...............2531.6750000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..........................................................................CTGTGCTGCAATAACAATAAAAACTG..........................................................................................................................................................................................2631.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AACTGCAACACCGATGACCAAATGCC.....................................................................................................................................................................................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CCAAACTAATGGGC---GTGGCATACTAA...............2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........AA------------------AACTGCAACACCGATGACCAAATGC......................................................................................................................................................................................................................................2721.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AACACCGATGACCAAATGCC.....................................................................................................................................................................................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCAA------------------AACTGCAACACCGATGACC............................................................................................................................................................................................................................................2321.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGCAAAGTCCATCTGTGCTGCAATAACAA...................................................................................................................................................................................................2921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AA------------------AACTGCAACACCGATGACCAAATGCC.....................................................................................................................................................................................................................................2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGCAAAGTCCATCTGTGCTGC...........................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
..................................................................AAGTCCATCTGTGCTGCAATA.......................................................................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
droSim2
GCAGA--CTGCAA------------------AACTGCAACACCGATGACCAAATGCATTAAAAGCAAAGTCCATCTGTGCTGCAATAACAATAAAAACTGTTTT--TGTCATACCACACGTAAATTGTCATTATAAACAAAAATATTTCATA---TTCTGTGAATTAAAA--AAAAAAAAAT-A----C--TTACACACCACTACTGCCC-ACGTTGCTCACAAGCA-ACTTTCGCTACCGCCAAAACTAATGGGCTCCCTGGCATACTAAAATTTGTTG-CTAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................TAATGGGCTCCCTGGCATACTAAAATT...........2723.50700020000000050000
...............................................................................................................TACCACACGTAAATTGTCATTATA.......................................................................................................................................................2422.00400300010000000000
...........................................................................................................................................................................................................................................................TGGGCTCCCTGGCATACTAAAATTTGT........2722.00400000000001030000
..................................TGCAACACCGATGACCAAA.........................................................................................................................................................................................................................................1941.50600005000001000000
...........................................................................................................................................................................................................................................................TGGGCTCCCTGGCATACTAAAATTT..........2521.50300000000000030000
..................................................................AAGTCCATCTGTGCTGCA..........................................................................................................................................................................................................1831.33400000400000000000
........TGCAA------------------AACTGCAACACCGATGACCAA..........................................................................................................................................................................................................................................2641.25500000000000041000
..........................................CGATGACCAAATGCATTAAAAGCAA...........................................................................................................................................................................................................................2521.00200000000002000000
............................................................................................................................................................................................................................................TACCGCCAAAACTAATGGGCTCCC..........................2421.00200000000002000000
...........................................................................................................................................................................................................................................................TGGGCTCCCTGGCATACTAAAATTTG.........2621.00200000000001010000
........................................................................................................................................................................................................................................................TAATGGGCTCCCTGGCATACTAAAAT............2621.00200000000000020000
...........................................................................................................................................................................................................................CACAAGCA-ACTTTCGCTACC..............................................2050.80400004000000000000
.............................................................................................................................................................................................................................CAAGCA-ACTTTCGCTACC..............................................1850.80400004000000000000
........TGCAA------------------AACTGCAACACCGATGACCAAA.........................................................................................................................................................................................................................................2740.75300000000000012000
.......................................................................................................................................................................................................................................................CTAATGGGCTCCCTGGCATAC..................2120.50100100000000000000
.....................................................................................................TTT--TGTCATACCACACGTAAATTG...............................................................................................................................................................2420.50100100000000000000
.............................................................................................AAAACTGTTTT--TGTCAT..............................................................................................................................................................................1720.50100000000001000000
.....................................................................................................................................................................................T-A----C--TTACACACCACTACTGCCC-ACGTA......................................................................2720.50100000000000010000
..........................................CGATGACCAAATGCATTA..................................................................................................................................................................................................................................1820.50100000000001000000
.............................................................................................................CATACCACACGTAAATTGTCATTATAAACA...................................................................................................................................................3020.50100000010000000000
.......................................................................................................................................................................................................................................TTCGCTACCGCCAAAACTAATGGGC..............................2520.50100000000001000000
...........................................................................................................................................................................................................................................................TGGGCTCCCTGGCATACTAAAATT...........2420.50100000000000010000
........................................................................................................................................................................................................................................................TAATGGGCTCCCTGGCATACTAAAA.............2520.50100000010000000000
...........................................................................................................................................................................................................................................................TGGGCTCCCTGGCATACTAAAATTTGA........2720.50100000000000010000
..........................................................................................................TGTCATACCACACGTAAATTGTCATTATA.......................................................................................................................................................2920.50100000010000000000
................................................................................................................ACCACACGTAAATTGTCATTATA.......................................................................................................................................................2320.50100000010000000000
....................................................................................................TTTT--TGTCATACCACACGTAAATTGT..............................................................................................................................................................2620.50100000000010000000
............A------------------AACTGCAACACCGATGACCAAATG.......................................................................................................................................................................................................................................2540.50200000000000020000
...................................................AATGCATTAAAAGCAAAGTCCATCTGA................................................................................................................................................................................................................2720.50100000000100000000
.........................................................................................................................................................................................................................................CGCTACCGCCAAAACTAATGGGCTCCC..........................2720.50100000000001000000
...............................................................................................................TACCACACGTAAATTGTCATTATAAAC....................................................................................................................................................2720.50100100000000000000
.........................................................................................................................................................................................................................................................AATGGGCTCCCTGGCATACT.................2020.50100000000010000000
.............................................................................................................CATACCACACGTAAATTGTCATTATA.......................................................................................................................................................2620.50100000010000000000
...........................................................................................................................................................................................................................................................TGGGCTCCCTGGCATACTAAAATTTA.........2620.50100000000000010000
............................................................................................................TCATACCACACGTAAATTGTCATTATA.......................................................................................................................................................2720.50100000010000000000
..............................................................................................................................................ATATTTCATA---TTCTGTGAATTAAA.....................................................................................................................2420.50100000000000010000
................................................................................................................................................................................................................CC-ACGTTGCTCACAAGCA-ACT.......................................................2120.50100000000001000000
..............................................................................................................................................ATATTTCATA---TTCTGTGAATTAAAA--..................................................................................................................2520.50100000000000010000
................................................................................................................................................................................................................................GCA-ACTTTCGCTACCGCCAAA........................................2120.50100010000000000000
...........................................................AAAAGCAAAGTCCATCTGTGC..............................................................................................................................................................................................................2120.50100000000001000000
...............................................................................................................................................................................................................................................CGCCAAAACTAATGGGCTCCCTGGCATA...................2820.50100000000000010000
......................................................................................................................................................................................................................................TTTCGCTACCGCCAAAACTAATGGG...............................2520.50100010000000000000
.......................................................................................................................................................................................................................TGCTCACAAGCA-ACTTTCGCTACCGC............................................2650.40200020000000000000
...........................................................................TGTGCTGCAATAACAATAAAAACTG..........................................................................................................................................................................................2530.33100000001000000000
..........CAA------------------AACTGCAACACCGATGACCAAATG.......................................................................................................................................................................................................................................2740.25100000000100000000
..................................TGCAACACCGATGACCA...........................................................................................................................................................................................................................................1740.25100000000001000000
..........CAA------------------AACTGCAACACCGATGACCAAA.........................................................................................................................................................................................................................................2540.25100000000001000000
........TGCAA------------------AACTGCAACACCGATGACC............................................................................................................................................................................................................................................2440.25100000000000010000
........TGCAA------------------AACTGCAACACCGATGACCAAAA........................................................................................................................................................................................................................................2840.25100000000000010000
.......................................................................................................................................................................................................................TGCTCACAAGCA-ACTTTCGCTACCGCC...........................................2750.20100010000000000000
..........................................................................................................................................................................................................................TCACAAGCA-ACTTTCGCTACCGCC...........................................2450.20100100000000000000
............................................................................................................................................................................................................................ACAAGCA-ACTTTCGCTA................................................1750.20100000000001000000
....................................................................................................................................................................................................................................ACTTTCGCTACCGCCTG.........................................17180.06100000000001000000
droSec2
GCAGACTGTGCAA------------------AACTGCAACACCGATGACCAAATGCATTAAAAGCAAAGTCCATCTGTGCTGCAATAACAATAAAAACTGTTTT-TTGTCATACCACGCTTAAATTGTTATA--AAAAAAAAATATTTCATA---TTCTGTGAATTATAA--AA-AAACAAT-G----C--TTACACACCACTACTGCCCAACGTTGCTCACAAGCA-ACTTTCGCTACCGCCCAAACTAATGGGC---GTAGCATACTAAAATTTGTTG-CTAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................AGCA-ACTTTCGCTACCGCCCA.........................................2170.1411000
......................................................................................................................................................................................................................................TTTCGCTACCGCCCAAACTAAT..................................2280.1310100
................................................................................................................................................................................AACAAT-G----C--TTACACACCACTA..................................................................................2180.1311000
..........CAA------------------AACTGCAACACCGATGAC.............................................................................................................................................................................................................................................2190.1111000
............A------------------AACTGCAACACCGATGACCA...........................................................................................................................................................................................................................................2190.1111000
droYak3
GCAGGCTGTGCAA------------------AACTGCAACAGCGATGACTAAATGCCTTAGATGCAAAATCCATCTGTGCTGCAATAATAAAAAAAAATGTTTT-TTGTCATACCACTCTTAAATTGTCATTATAAATAAAAATGTTTCTTA---TCCTGCGAATTATGA--AA-AAACAAT-G----C--TTATACACTATTATTGTCCAACGTTCCTCACAAGCA-ACTATCGGTACGGCCCAAACTAGTTGGC---A-----TACCAAAATT---TA-TTGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TAG----------------------------AACAGGAACACCAATATCCAAATTAATTAAATGCAATGTCCATCTTTGCTGGAACAACAACAAAAACTGTTTT-TTGTCATACCATACCTAATTTTCAAAATGATATAGAAATAATTGTCAACT---TTTC--------------AAAGATTTTTTTATTTTATGTACCAGTTTGGCCCAAAGTTGC--ACAAGTA-TATTTCGGAAGCTCCCAAACCGATAGGC---G-----ACTCAACATT---CT-TACCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GTG----CCACCGGACTTCTATGACAACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTG----CCACCGGACTTCTATGACAACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GCAAATTCTGCAA------------------GACTGCGACACCAATGTCCAAATGCCGTAAATGTAAAGTCAACCTTTGTTGTAATAACAACAAAAACTGTTTT-TTGACTTTTCATACCTTATTATTTGAAATCAATAAAAATCATTTAAA---GTTGTTGA------A--AA-AAAAAATTTCTTTGTTTTGTATACCACCATGGCCCAATGTTGCTCACAAGCA-ACTTTCCGTAGCCCCCAAACCGGTGGGC---GTGGCGACTTAAAATTT--TGTCCTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................GTAAATGTAAAGTCAACCTTTG...............................................................................................................................................................................................................2250.60302010
.....TTCTGCAA------------------GACTGCGACACCAAT................................................................................................................................................................................................................................................2320.50101000
................................................................................................................TTCATACCTTATTATTTGAAATCAA.....................................................................................................................................................2530.33101000
....................................................................................................................TACCTTATTATTTGAAATCAATAAAAA...............................................................................................................................................2730.33101000
..............................................................................................................................................................................................TTTGTATACCACCATGGCCCAATGT.......................................................................2560.33201010
..........................................................................................................TGACTTTTCATACCTTATTATTTGA...........................................................................................................................................................2530.33101000
......................................................................................................................................................................................TTCTTTGTTTTGTATACCACCATGGCC.............................................................................2770.29201010
..........................................................................................................................................................................................TTGTTTTGTATACCACCATGGCC.............................................................................2370.29202000
..........................................................................................................................................................................................................CATGGCCCAATGTTGCTCACAAG.............................................................2370.29202000
...........................................................................................................................................................................................................................................................TGGGC---GTGGCGACTTAAAATTT--TGTCC...2770.29200020
...................................................AATGCCGTAAATGTAAAGTCAACCTTTG...............................................................................................................................................................................................................2840.25101000
..................................................AAATGCCGTAAATGTAAAGTCAACC...................................................................................................................................................................................................................2540.25101000
...................................................AATGCCGTAAATGTAAAGTCAACC...................................................................................................................................................................................................................2440.25101000
..................................................AAATGCCGTAAATGTAAAGTCAACCTT.................................................................................................................................................................................................................2740.25100010
........................................................CGTAAATGTAAAGTCAACCTTTG...............................................................................................................................................................................................................2340.25101000
....................................................ATGCCGTAAATGTAAAGTCAACC...................................................................................................................................................................................................................2340.25101000
................................................CCAAATGCCGTAAATGTAAAGTC.......................................................................................................................................................................................................................2340.25101000
........TGCAA------------------GACTGCGACACCAATGTCC............................................................................................................................................................................................................................................2480.25200020
........................................................CGTAAATGTAAAGTCAACCTTTGTTG............................................................................................................................................................................................................2640.25101000
...................................................AATGCCGTAAATGTAAAGTCAAC....................................................................................................................................................................................................................2340.25101000
...................................................AATGCCGTAAATGTAAAGTCAACCTT.................................................................................................................................................................................................................2640.25101000
....................................................ATGCCGTAAATGTAAAGTCAACCT..................................................................................................................................................................................................................2440.25101000
..................................................................................................................................................................................................................................................CCAAACCGGTGGGC---GTGGCGACT..................23100.20201100
.........................................................GTAAATGTAAAGTCAACCTTTGTTG............................................................................................................................................................................................................2550.20101000
................................................................................................................................................................................................TGTATACCACCATGGCCCAATGTTG.....................................................................2560.17100010
..............................................................................................................................................................................................TTTGTATACCACCATGGCCCAATGTTGCT...................................................................2960.17101000
...................................................................................................................................................................................................................................................CAAACCGGTGGGC---GTGGCGACTTAA...............2560.17101000
................................................................................................................................................................................................TGTATACCACCATGGCCCAATGTTGC....................................................................2660.17101000
................................................................................................................................................................................................TGTATACCACCATGGCCCAATGTTGCT...................................................................2760.17101000
...............................................................................................................................................................................................TTGTATACCACCATGGCCCAATGTTG.....................................................................2660.17101000
.....................................................................................................................................................................................................................................CTTTCCGTAGCCCCCAAACCG....................................2170.14101000
...........................................................................................................................................................................................................................................................TGGGC---GTGGCGACTTAAAA.............1970.14101000
.......................................................................................................................................................................................................CACCATGGCCCAATGTTGCTCACAAGC............................................................2770.14101000
.....................................................................................................................................................................................................................................CTTTCCGTAGCCCCCAAACCGG...................................2270.14101000
........................................ACCAATGTCCAAATGCCGTAAATGTAA...........................................................................................................................................................................................................................2770.14101000
............................................................................................................................................................................................................................................................GGGC---GTGGCGACTTAAAATTT--TGTCCTA.2870.14101000
........................................................................................................................................................................................................................................TCCGTAGCCCCCAAACCGGTGGGC---G..........................2570.14101000
.................................................................................GTAATAACAACAAAAACTGTTTT-TT...................................................................................................................................................................................2570.14101000
..................................................................................................................................................................................................................................A-ACTTTCCGTAGCCCCCAAACCGG...................................2470.14101000
......................................................................................................................................................................................................................................TTTCCGTAGCCCCCAAACCGGTGGGC---G..........................2770.14101000
.............................................TGTCCAAATGCCGTAAATGTAA...........................................................................................................................................................................................................................2270.14100010
....................................................................................................................................................................................................................................ACTTTCCGTAGCCCCCAAACCGG...................................2370.14101000
.........................................CCAATGTCCAAATGCCGTAAATGTA............................................................................................................................................................................................................................2570.14101000
.........................................CCAATGTCCAAATGCCGTAAATGTAAA..........................................................................................................................................................................................................................2770.14101000
.......................................................................................................................................................................................................CACCATGGCCCAATGTTGCTCACAAG.............................................................2670.14101000
.........................................................................................................................................................................................................CCATGGCCCAATGTTGCTCACAAGCA-ACT.......................................................2970.14100010
.............................................TGTCCAAATGCCGTAAATGTAAA..........................................................................................................................................................................................................................2370.14100010
........................................ACCAATGTCCAAATGCCGTAAATGT.............................................................................................................................................................................................................................2570.14100010
...................................................................................................................................................................................................ATACCACCATGGCCCAATGTTGCT...................................................................2470.14101000
...............................................................................................................................................................................................................................AGCA-ACTTTCCGTAGCCCCCAAACCGG...................................2770.14101000
........................................................................................................................................................................................................................GCTCACAAGCA-ACTTTCCGTAGCCCC...........................................2680.13101000
............................................................................................................................................................................................................TGGCCCAATGTTGCTCACAAGCA-..........................................................2380.13101000
..........................................................................................................................................................................................TTGTTTTGTATACCACCATGG...............................................................................2180.13100010
....................................................................................................................................................................................................................TGTTGCTCACAAGCA-ACTTTCCGTAGCC.............................................2880.13101000
.....................................................................................................................................................................................................................................CTTTCCGTAGCCCCCAAAC......................................1980.13101000
..........CAA------------------GACTGCGACACCAATGTCCAAA.........................................................................................................................................................................................................................................2580.13101000
...........AA------------------GACTGCGACACCAATGTCCA...........................................................................................................................................................................................................................................2280.13101000
........TGCAA------------------GACTGCGACACCAATGTCCA...........................................................................................................................................................................................................................................2580.13101000
..........CAA------------------GACTGCGACACCAATGTCCAAAA........................................................................................................................................................................................................................................2680.13101000
..........CAA------------------GACTGCGACACCAATGTCCA...........................................................................................................................................................................................................................................2380.13101000
........TGCAA------------------GACTGCGACACCAATGTCCAA..........................................................................................................................................................................................................................................2680.13101000
.........................................................................................................................................................................................................................CTCACAAGCA-ACTTTCCGTAGCCC............................................2480.13101000
..........................................................................................................................................................................................................................TCACAAGCA-ACTTTCCGTAGCCCCC..........................................2580.13101000
........TGCAA------------------GACTGCGACACCAATGTCCAAA.........................................................................................................................................................................................................................................2780.13101000
...................................................................................................................................................................................................................................................CAAACCGGTGGGC---GTGGCGACT..................22100.10100100
...................................................................................................................................................................................................................................................CAAACCGGTGGGC---GTGGCG.....................19100.10100010
droVir3
AC--------------------------------AGGAACACCATTGTCCAAATGCTTTAAATGCAAAGTCCATCTTTGCTGTAATAACAATAAAAACTGTTTT-ATTTCTTTTCATAACTAATTTACTAAAATAAATAAAATTAATTTTAAGCT----G---TTTCCAA--GA-AAACAATTTTTTATATATATATACCACTATAGCCCAACGTTGCTCACAAGCA-ACTTTCTGTAGCGCCCAAACCGATGGGC---GTGGCAACCTTAAATGT--TG-GTCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTG.....................................................................2113.003000000000000000000000000000000000000003000000000000000000000000
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTGCTC..................................................................2413.003000000000000000000000000000010010000001000000000000000000000000
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTGCTCA.................................................................2513.003000000000000000000000000000000010000100100000000000000000000000
.......................................................................................................................................................................................................................TGCTCACAAGCA-ACTTTCTGTAGCGCCC..........................................2812.002000000000000000000000000000000020000000000000000000000000000000
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTGC....................................................................2212.002000000000000000000000000000000000000101000000000000000000000000
.........................................................................................................................................................................................................CTATAGCCCAACGTTGCTCA.................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTGCTCAC................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................TGCTCACAAGCA-ACTTTCTGTAGCGCC...........................................2711.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTGCTCACC...............................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................TCCAAATGCTTTAAATGCAAAGTCCATC...................................................................................................................................................................................................................2811.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................TACCACTATAGCCCAACGTTGCTCACA...............................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................ATATATATATACCACTATAGCC.............................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................TTCTGTAGCGCCCAAACCGATGGGC---GTC........................2820.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
GTG----CCGCAGGACTTTTACGACAGCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTG----CCGCAGGATTTTTACGACAGATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:46 AM