dan_1176

exon [dana_GLEANR_3253:4]; CDS [Dana\GF20548-cds]; intron [Dana\GF20548-in]; Antisense to intron [Dana\GF20554-in]

Name	Class	Family	Strand
(T)n	Simple_repeat	Simple_repeat	+
Hoana8	DNA	hAT-hobo	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CATAAGGATCGGCCGACTATATCCTATAGCTGTCATAGAAGGATCTGCATTGGCATAACTTTGGTGTTTTTTAAGTTAGAAAGATGTGATTTGGTACAGATTCCATTTTGAGCAAAGTAATCTGATTTTCCAGTAATCTGAAAAAAAAAAAAAAAAAAAAATCTTTGGTCCAATCTGCGTTGGCGATGCTTATCGCACCAGATGGAACCACGAGCTGTATGAGCTGTACGGGGATGTTGATATAGTAAGCC *****************************************************************************************..............((((...........((.((((.......)))).)).............))))..*****************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V039 embryo	V105 male body	V106 head
............................................................................................................................................AAAAAAAAAAAAAAAAAAAA...........................................................................................	20	0	20	1.00	20	20	0	0	0	0
.................................CATAGAAGGATCTGCATTGGCATAA.................................................................................................................................................................................................	25	0	3	0.33	1	1	0	0	0	0
................................TCATAGAAGGATCTGCATTGGCAT...................................................................................................................................................................................................	24	0	3	0.33	1	0	1	0	0	0
..............................TGTCATAGAAGGATCTGCATTGGC.....................................................................................................................................................................................................	24	0	3	0.33	1	1	0	0	0	0
....................................................................................................................................................................................................ACCAGATGGAACCACGAGCTGTAT...............................	24	0	20	0.20	4	3	1	0	0	0
....................................................................................................................................................................................................ACCAGATGGAACCACGAGCTGTA................................	23	0	20	0.15	3	3	0	0	0	0
.......................................................................................................................................ATCTGAAAAAAAAACAAAGAAAAGA...........................................................................................	25	3	7	0.14	1	0	1	0	0	0
......................................................................................................................................ATTCTGAAAAAGAAAAAAAAAAAA.............................................................................................	24	2	7	0.14	1	1	0	0	0	0
...........................................................................................TGGTACAGATTCCATTTTGAGCAAAGT.....................................................................................................................................	27	0	8	0.13	1	0	1	0	0	0
......................................................................TTAAGTTAGAAAGATGTGATTTGGTA...........................................................................................................................................................	26	0	10	0.10	1	0	1	0	0	0
........................................................................................................................................................................................GATGCTTATCGCACCAGATGGAACC..........................................	25	0	20	0.10	2	0	2	0	0	0
...........................................................................TTAGAAAGATGTGATTTGGTA...........................................................................................................................................................	21	0	10	0.10	1	0	0	0	1	0
.................................................................................................................................................................................................................ACGAGCTGTATGAGCTGTACGG....................	22	0	20	0.10	2	0	0	0	2	0
..................................................................................................................................................................................................................................TACGGGGATGTTGATATAGTAAGCC	25	0	20	0.10	2	0	2	0	0	0
..........................................................................GTTAGAAAGATGTGATTTGG.............................................................................................................................................................	20	0	12	0.08	1	0	0	0	1	0
............................................CTGTATTGGCATAACTTTGGTGTTT......................................................................................................................................................................................	25	1	16	0.06	1	0	1	0	0	0
.......................................................................TAAGTGAGAAAGATGTGGTTTGG.............................................................................................................................................................	23	2	18	0.06	1	0	0	1	0	0
..........................................................................................TTGGTACAGATTCCATTTTGAGCAAC.......................................................................................................................................	26	1	18	0.06	1	0	0	1	0	0
.......................................................................TAAGTTAGAAAGATGTGATTTGT.............................................................................................................................................................	23	1	19	0.05	1	0	0	1	0	0
.................................................................................................................................................................................................................ACGAGCTGTATGAGCTGTACGGT...................	23	1	20	0.05	1	1	0	0	0	0
..................................................................................................................................................................................................GCACCGGATGGAACCACGAGCTGTA................................	25	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................TGGTCCAAGCTGCGTTGGCGATT...............................................................	23	2	20	0.05	1	1	0	0	0	0
.ATAAGGATCGGCCGACTATAT.....................................................................................................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................TTTGGTCCAATCTGCGTTGGCGAT................................................................	24	0	20	0.05	1	0	1	0	0	0
..............................................................GGTGTTTTTTAAGTTAGAAAGATGTG...................................................................................................................................................................	26	0	20	0.05	1	0	0	1	0	0
...........................................................................TTAGAAATATGTGATTTGG.............................................................................................................................................................	19	1	20	0.05	1	0	0	0	0	1
.......ATCGGCCGACTATATCCTATAGC.............................................................................................................................................................................................................................	23	0	20	0.05	1	0	0	0	0	1
..................................................................................................................................GAGTACTCAGAAAAAAAAAAAAAAAAA..............................................................................................	27	3	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................GAGCTGTATGAGCTGTACGGGGATG...............	25	0	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................GGAACCACGAGCTGTATGAGCTGTA.......................	25	0	20	0.05	1	1	0	0	0	0
..............................................................................................................................................................................................................ACCACGAGATGTATGAGCTGTACGG....................	25	1	20	0.05	1	1	0	0	0	0
......................................................................................................................................................................................................CAGATGGAACCACGAGCTGTATGAG............................	25	0	20	0.05	1	0	0	1	0	0
.............................................................................................................................................................................................................AACCACGAGCTGTATGAGCTGTACT.....................	25	1	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................TCGCACCAGATGGAACCACGAGCTGTA................................	27	0	20	0.05	1	1	0	0	0	0
................................................................TGTTTTTTAAGTTAGAAAGATGTGA..................................................................................................................................................................	25	0	20	0.05	1	0	0	1	0	0
..........................................................................................................................................................................................TGCTTATCGCACCAGATGGAAC...........................................	22	0	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................TTCGTTGGCGATGCTTATCGCACC....................................................	24	1	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................CCAGATGGAACCACGAGCTGTATG..............................	24	0	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................TCGCACCAGATGGAACCACGAGCT...................................	24	0	20	0.05	1	1	0	0	0	0
.................TATATCCTATAGCTGTCATAGAAG..................................................................................................................................................................................................................	24	0	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................ACCAGATGGAACCACGAGCTG..................................	21	0	20	0.05	1	1	0	0	0	0
....................................................................TTTTAAGTTAGAAAGATGTG...................................................................................................................................................................	20	0	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................TGCTTATCGCACCAGATGGAACCACGGGC....................................	29	1	20	0.05	1	1	0	0	0	0

GTATTCCTAGCCGGCTGATATAGGATATCGACAGTATCTTCCTAGACGTAACCGTATTGAAACCACAAAAAATTCAATCTTTCTACACTAAACCATGTCTAAGGTAAAACTCGTTTCATTAGACTAAAAGGTCATTAGACTTTTTTTTTTTTTTTTTTTTTAGAAACCAGGTTAGACGCAACCGCTACGAATAGCGTGGTCTACCTTGGTGCTCGACATACTCGACATGCCCCTACAACTATATCATTCGG *****************************************************************************************..............((((...........((.((((.......)))).)).............))))..*****************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V039 embryo	V105 male body	V055 head
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATATC......	26	0	20	4.00	80	13	52	5	10	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGACAT................................	25	0	20	2.60	52	43	9	0	0	0
......................................................................................................................................................................CCAGGTTAGACGCAACCGCTACGAAT...........................................................	26	0	20	2.00	40	40	0	0	0	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTACAACTATATC......	28	0	20	0.95	19	19	0	0	0	0
................................................................................................................................................................................................AGCGTGGTCTACCTTGGTGCTCGACAT................................	27	0	20	0.60	12	9	0	2	1	0
...................................................................................................................................................................................................GTGGTCTACCTTGGTGCTCGACAT................................	24	0	20	0.50	10	0	1	6	3	0
............................................................................................................................................................................................................................CTCGACATGCCCCTACAACTATATC......	25	0	20	0.45	9	0	9	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATAT.......	25	0	20	0.35	7	0	7	0	0	0
..........................ATCGACAGTATCTTCCTAGACGTAA........................................................................................................................................................................................................	25	0	3	0.33	1	0	1	0	0	0
.....................................................................................................................................................................................CCGCTACGAATAGCGTGGTCTACCT.............................................	25	0	20	0.30	6	5	1	0	0	0
..........................................................................................................................................................................................................................TACTCGACATGCCCCTACAACTATATC......	27	0	20	0.30	6	4	2	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATATCAT....	28	0	20	0.30	6	1	0	0	5	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTACAACTATAGC......	28	1	20	0.25	5	5	0	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGACA.................................	24	0	20	0.25	5	1	0	4	0	0
...............................................................................................................................................................................ACGCAACCGCTACGAATAGCGTGGTCT.................................................	27	0	20	0.25	5	0	5	0	0	0
...................................................................................................................................................................AAACCAGGTTAGACGCAACCGCTACGAAT...........................................................	29	0	20	0.25	5	1	4	0	0	0
......................................................................................................................................................................CCAGGTTAGACGCAACCGCTACGA.............................................................	24	0	20	0.20	4	4	0	0	0	0
.................................................................................................................................................................................................GCGTGGTCTACCTTGGTGCTCGACAT................................	26	0	20	0.20	4	0	3	1	0	0
..........................................................................................................................................................................................ACGAATAGCGTGGTCTACCTTGGTGCT......................................	27	0	20	0.20	4	1	3	0	0	0
.............................................................................................................................................................................................................................TCGACATGCCCCTACAACTATATCAT....	26	0	20	0.20	4	4	0	0	0	0
.............................................................................................................................................................................................................................TCGACATGCCCCTACAACTATATC......	24	0	20	0.20	4	3	1	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTGCTCGACATACT.............................	25	0	20	0.20	4	2	2	0	0	0
......................................................................................................................................................................................CGCTACGAATAGCGTGGTCTACCT.............................................	24	0	20	0.20	4	4	0	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTGCTCGACAT................................	22	0	20	0.20	4	1	3	0	0	0
...............................................................................................................................GAGGTCATTAGACTTTTTCTGT......................................................................................................	22	3	6	0.17	1	0	0	0	0	1
............................................................................................CCATGTCTAAGGTAAAACTCGTTTCAT....................................................................................................................................	27	0	6	0.17	1	1	0	0	0	0
......................................................................................................................................................................CCAGGTTAGACGCAACCGCTACGAATAG.........................................................	28	0	20	0.15	3	2	1	0	0	0
.............................................................................................................................................................................................................................CCGACATGCCCCTACAACTATATCAT....	26	1	20	0.15	3	3	0	0	0	0
...........................................................................................................................................................................................................CCTTGGTGCTCGACATACTCGACAT.......................	25	0	20	0.15	3	2	1	0	0	0
............................................................................................................................................................................................GAATAGCGTGGTCTACCTTGGTGCT......................................	25	0	20	0.15	3	0	3	0	0	0
.....................................................................................................................................................................................................................CGACATACTCGACATGCCCCTACAACTAT.........	29	0	20	0.15	3	0	3	0	0	0
...............................................................................................................................................................TTGGAAACCAGGTTCGAC..........................................................................	18	2	20	0.15	3	1	2	0	0	0
...............................................................................................................................................................................................TAGCGTGGTCTACCTTGGTGCTCGACAT................................	28	0	20	0.15	3	0	3	0	0	0
..............................................................CCACAAAAAATTCAATCTTTCTACACT..................................................................................................................................................................	27	0	20	0.15	3	3	0	0	0	0
............................................................................................................................................................................................................................CTCGACATGCCCCTACAACTATATCAT....	27	0	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................CCGCTACGAATAGCGTGGTCT.................................................	21	0	20	0.10	2	2	0	0	0	0
.......................................................................................................................................................................CAGGTTAGACGCAACCGCTACGAAT...........................................................	25	0	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................AGAAACCAGGTTAGACGCAACCGCTAC...............................................................	27	0	20	0.10	2	2	0	0	0	0
...................................................................................................................................................................AAACCAGGTTAGACGCAACCGCTACGA.............................................................	27	0	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTACAACTATAT.......	27	0	20	0.10	2	0	2	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACGACTATATC......	26	1	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTGCTCGACATACTCG...........................	27	0	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................................ATAGCGTGGTCTACCTTGGTGCTCGA...................................	26	0	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................AGCGTGGTCTACCTTGGTGCTCGAC..................................	25	0	20	0.10	2	2	0	0	0	0
..........................................................................................................................................................................................................................AACTCGACATGCCCCTACAACTATATCAT....	29	1	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................ACTCGACACACCCCTACAACTATATC......	26	2	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGACTT................................	25	1	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATAG.......	25	1	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................CGCTACGAATAGCGTGGTCTACCTT............................................	25	0	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTGCTCGACA.................................	21	0	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................CTCGACATGCCCCTACAACTATAGC......	25	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTGCTCGACATACTC............................	26	0	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................AGCGTGGTCTACCTTGGTGCTCGACAA................................	27	1	20	0.05	1	0	0	1	0	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTAGAACTATAT.......	27	1	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................CCAGGTTAGACGCAACCCCTACGAAT...........................................................	26	1	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................AAAGCGTGGTCTACCTTGGTGCTCG....................................	25	1	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................GCAACCGCTACGAATAGCGTGGTCTAC...............................................	27	0	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................TCTCGACATGCCCCTACAACTATATCAT....	28	1	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................AGCGTGGTCTACCTTGGTGCTTGAC..................................	25	1	20	0.05	1	1	0	0	0	0
..............................................................................................................................................................................................................................CGACATGCCCCTACAACTATAGCAT....	25	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................ACCAGGTTAGACGCAACCGCTACGAAT...........................................................	27	0	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTACGACTATATC......	28	1	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................GTGGTCTACCTTGGTGCTCGAC..................................	22	0	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................................CGACAGACTCGACATGCCCCTACAACTAT.........	29	1	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGACATACT.............................	28	0	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................TGTCTACCTTGGTGCTCGACATACT.............................	25	1	20	0.05	1	0	0	1	0	0
.................................................................................................................................................................................................GCGTGGTCTACCTTGGTGCTCGACA.................................	25	0	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTAGAACTATAT.......	25	1	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................CCTTGGTGCTCGACATACTCGACATG......................	26	0	20	0.05	1	1	0	0	0	0
..............................................................................................................................................................................................................................CGACATGCCCCTACCACTATATCAT....	25	1	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................AGCGTGGTCTACCTTGGTGC.......................................	20	0	20	0.05	1	0	1	0	0	0
................................................................................................................................................................TAGAAACCAGGTTAGACGCAACCGCTT................................................................	27	1	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................CTCGACATGCCCCTGCAAGTATATCAT....	27	2	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................CTCGACATGCCCCTACAACTATAT.......	24	0	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTACAACTATA........	26	0	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................GTGGTCTACCTTGGTGCTCGACATA...............................	25	0	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................TACTCGACATGCCCCTACAACTATATCAT....	29	0	20	0.05	1	1	0	0	0	0
............................................................................................................................................................................................GAATAGCGTGGTCTACCTTGGTGCTCGA...................................	28	0	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................TCCGCTACGAATAGCGTGGTCTACCT.............................................	26	1	20	0.05	1	1	0	0	0	0
......................................................................................................................................................................CCAGGTTAGACGCAACCGCTACGAA............................................................	25	0	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCTCTACAACTATATC......	26	1	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACTACTATATC......	26	1	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGACATAC..............................	27	0	20	0.05	1	1	0	0	0	0
.................................................................................................................................................................................GCAACCGCTACGAATAGCGTGGTCTACCT.............................................	29	0	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................GCCGACATGCCCCTACAACTATATC......	25	2	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTACTCGACAT................................	22	1	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................GTGGTCTACCTTGGTGCTCG....................................	20	0	20	0.05	1	1	0	0	0	0
..............CTGATATAGGATATCGACAGTATCTTC..................................................................................................................................................................................................................	27	0	20	0.05	1	1	0	0	0	0
....................................................................................................................................................................................................TGGTCTACCTTGGTGCTCGACATA...............................	24	0	20	0.05	1	1	0	0	0	0
.................................................................................................................................................................................GCAACCGCTACGAATAGCGTGGTCT.................................................	25	0	20	0.05	1	0	1	0	0	0
.................................................AACCGTATTGAAACCACAAAA.....................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................GGTCTACCTTGGTGCTCGACATAC..............................	24	0	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................CCAGGTTAGACGCAACCGCTACGAGT...........................................................	26	1	20	0.05	1	1	0	0	0	0
..................................................................................................................................................................................................CGTTGTCTACCTTGGTGCTCGACAT................................	25	1	20	0.05	1	0	0	1	0	0
............................................................................................................................................................................................GAATAGCGTGGTCTACCTTGGTGCTCG....................................	27	0	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................CAGCGTGGCCTACCTTGGTGCTCG....................................	24	2	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................................CATACTCGACATGCCCCTACAACTATAT.......	28	0	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................CAGACGCAACCGCTACGAAT...........................................................	20	1	20	0.05	1	1	0	0	0	0
..................................................................................................................................................................................................CGGGGTCTACCTTGGTGCTCGACAT................................	25	1	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................................................TAGCGTGGTCTACCTTGGTGCTC.....................................	23	0	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................CGCTACGAATAGCGTGGTCTACCGT............................................	25	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................................CGACATACTCGACATGCCCCTACAGCT...........	27	1	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................................................................ATACTCGACATGCCCCTACAACTAT.........	25	0	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................CGACATACTCGACATGCCCCTACAAC............	26	0	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................CGACATGCCCCTACAACTATATCA.....	24	0	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................AACCGCTACGAATGGCGTGGTCTACCTT............................................	28	1	20	0.05	1	1	0	0	0	0
..............................................................CCACAAAAAATTCAATCTTGCTACACT..................................................................................................................................................................	27	1	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATATAAT....	28	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................................GCTCTACCTTGGTGCTCGACATACT.............................	25	1	20	0.05	1	0	0	1	0	0
..........................................................................................................................................................................................................................TACTCGACATGCCCCTACAACTATATCC.....	28	1	20	0.05	1	1	0	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGACAG................................	25	1	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................CTAGAAACCAGGTTAGACG.........................................................................	19	1	20	0.05	1	1	0	0	0	0
.....................................................................................................................................................................................CCGCTACGAATAGCGTGGTCTACCTT............................................	26	0	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATA........	24	0	20	0.05	1	1	0	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGA...................................	22	0	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................CTACCTTGGTGCTCGACATACTCGACA........................	27	0	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................TGGTGCTCGACATACTCGACATGCCCCT.................	28	0	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................TACTCGACATGCCCCTACCACTATATC......	27	1	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................CGGTCTACCTTGGTGCTCGACAT................................	23	1	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................................ACGCAACCGCTACGAATAGCGTGGTC..................................................	26	0	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................CATACTCGACATGCCCCTACAACTATATC......	29	0	20	0.05	1	1	0	0	0	0
......................................................................................................................................................................................CGCTACGAATAGCGTGGTCTAACT.............................................	24	1	20	0.05	1	1	0	0	0	0
................................................................................................................................................................................................................................TCATGCCCCTACAACTATATC......	21	1	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................CGCAACCGCTACGAATAGCGTGGTCTAC...............................................	28	0	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................GTGGTCTACCTTGGTGCTCGA...................................	21	0	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................CGACATGCCCCTACAACTATATCATT...	26	0	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................................................TACCTTGGTGCTCGACATACTCGA..........................	24	0	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGTCAT................................	25	1	20	0.05	1	1	0	0	0	0
.............................................................................................................................................................................................................................TCGACATGCCCCTACCACTATATCAT....	26	1	20	0.05	1	1	0	0	0	0
..................................................................................................................................................................................................CGTGGTCTACCTTGGTGCTCGAAAT................................	25	1	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................................ACTCGACATGCCCCTACAACTATATCA.....	27	0	20	0.05	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13082:400365-400615 -	dan_1176	CATAAGGATCGGCCGA-------------------------------------------------------------------------------------------------------CTATATCCTATAGCT-----------------------------------------------------------------------------------------------GTCATAGAAG-GATC---------------TGCATTGGCATAACTTTGGT----GTTTTTTAAGTTAGAAAGATGTGATTTGGTACAGATTCCATTTTGAGCAAAGTAA----------------------------------------TCTGATTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTA-----------------------------------------------------ATCTGAAA----------------------------------AA----------AAAAAAAAAAAA---AAA----ATCTTTGGTCCAATCT---GCGTTGGCGATG------------------CTTATCGCACCAGATG--GAACCACG---AGCTGTATGAGCTGTACGGGGATGTTGATATAGTAAGCC
droBip1	scf7180000394494:2109-2344 +		CATAACGATCGGCCGA-------------------------------------------------------------------------------------------------------TTATACCTTATAGCT-----------------------------------------------------------------------------------------------GCCATATAACTGATTGATC-----------GGAAATT-----TATTATTTATTTATTTG-----TTTTTATTATGT-ATTTATTATTTATTTAATATTTACCACC------------------------------------------------------------------AAAATATAAGAAGAATAAAAAACGAAATAACAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AG-------TTTTTCCCAATCT---GCTTG-GTACTGTTTATC-TG---------TTTATGGCACCAAAAA--GCAGCGAAAATTTTCGTTTGCGCTTTATGGT----------------GGT
droKik1	scf7180000302798:50143-50305 -		TATGAAAATCGGACGA-------------------------------------------------------------------------------------------------------CTATATCTTATAGCT-----------------------------------------------------------------------------------------------GCCATAGAAAAGATCAAGA----------------------------------------------------------------------------------------------------------------------------------------------AA------------TTAATGGCAAAA---------------------AAATTATAACTTCGTTGTTTTTCA--AC--------GAATTTTC--AT-------------------------------------------------------------------------CTTTTAATCTTATATCTAATTTAAATTTCC-----------------------------------------------------AATTA--------------------------------AAA--ATG----------TATAACAAAAA---TAA----TT-------------------------------------------------------------------------------------------------------------CTTGGT
droFic1	scf7180000452073:1991-2264 -		GATCAAAATCGGATAA-------------------------------------------------------------------------------------------------------CTCTATCATATAGCT-----------------------------------------------------------------------------------------------GCCATAGGAGAGATCGAAAAAT-----------------------------------------------------------------------------ATATAT------------------------------------------------------------------AGAATTAATGAAAATA---------------------AATTGATAACATCGTTGTTTTTTA--TCGTACGAGCATGATTTTTTGAA---TATCAAGTTTTTAAACAACTTAAACAACTATATCATATAGCTCCCATATGATAGTCGAAAATATGG---AAAA------------TGAATAGAAAAATCG------------------------------------------------------------------------------------------------------------------------T-CA-------TAGCTTCGATGCT---GTTA-GGCTTTATGCATTTTGTTCGACGTAT--------------------------------TTGAGATCTGCAAGGGT--------------ATAT
droEle1	scf7180000490685:30301-30455 +		CATAATATCCTA------------------------------------TAGCTGCCACACAACTGAAAGTTTGAAATTGCCATAAATTTAGTTTTTTTAAGGTTATGAGGGTCGGATGACTATATTATATAGCT-----------------------------------------------------------------------------------------------CTAATATAAGCAATCAAAA----------------------------------------------------------------------------------------------------------------------------------------------AA------------T----------------AAAAAAAACTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AATTAACT-----TTTCAAT----------------------------------------------------------------------------------------------------TTG
droRho1	scf7180000769912:915-1096 +		CATAAGGATCGGCGGA-------------------------------------------------------------------------------------------------------CTATATCCTATAGCT-----------------------------------------------------------------------------------------------CGCATATAACTGATTGATC-----------GGAAATGCCATAACGTTGGT----ATTTGTAAAGTTAGGAAGCTGGGATTTTCTATGGGTTTTATATTTGGCCAATCAA----------------------------------------TCAGACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--A-----------------------------------------------------ATTTCATAAGGATAGAGGGTATTATAATTTTGGTC-AAAA----------------------------G------------------------------------------------------------------------------------------------------------------------TGTG
droBia1	scf7180000302377:1495040-1495241 +		CAGACGGATCGGGCAA-------------------------------------------------------------------------------------------------------ATATATCTTACAGCTCCCATAGAAAGATATTATATCTTTATATATTTTTTACTTAAATAATGAATTCTGAACTAAATTTTATCAACATTTAAGTGCTATGTAATATAGCTGCCATAGGAACAATCGGAA----------------------------------------------------------------------------------------------------------------------------------------------AA------------TTGGTG--------GGAAAATAATACGAAAC--AAATTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTCAGTGT---TCTTTGA-------------------CATGT-----------------------------------------------------------------TT
droTak1	scf7180000413457:3422-3550 -		CTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGAGTGTTCGAGA-----------GAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCGC---AAA----ATCTTTGGTCCAATCT---GCGTGGACGATA------------------TTTATCGCATCAGGTA--CAACCACG---AGCTGTATGAGCTGTACGGTGATGTTGACGTAGCCAGCC
droEug1	scf7180000409230:439292-439409 +		GTTTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGGAAAGAAGAGTTTTGGGTTTGATTTTTATTAGAGAAAAGTAA----------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAAATTCCTCTTGTTAAGTTTA-ATATT-----------------------------------------------------ATTTAGAA----------------------------------AAG----------AAAGTCTAAGA---AAG----TT-------------------------------------------------------------------------------------------------------------ATTTGG
dm3	chr2R:1044942-1045025 +		TAAAAAAGAGTGA----------------------------------------------------------------------------------------------------------ATACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--CTT------------------------------TAAGTATAGTGA----------------------------------------TTTTAATTTACAAA------------TTGATA--------AAAAAAAAATGAAGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAA----T------------------------------------------------------------------------------------------------------------------TT
droSim2	3l:20463654-20463824 -		AGCGAAAATTGTATG--------------------------------------------------------------------------------------------------------CTAT-TCATATAGCT-----------------------------------------------------------------------------------------------GCTATAGGAACAATCATTC-----------GAAAATC-----GTGCTTTTGT----TTGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------CATTTTGTTGCAAACGATATTGGAT--------------------------------------------------------GGAATTTTT------------T--------CATTC-------------------------------ATTTAATAACAACAACCACAAAAT-----AATTTTTT----------------------A--------------------------------------------GGT--TATAT---ACATTGA-------------------TATAC---------------------------------------------------------------TTAT
droSec2	scaffold_26:305113-305190 -		AAAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAA-AAA------ATTGTTGTAAAATCCACGTTTA-GGCAATC------------------CACGTTTTAACAGGAATTAAATTAT----------------------------------------GAG
droYak3	2L:21053276-21053415 +		CACG-----------C-------------------------------------------------------------------------------------------------------CTATAACACATAGCT-----------------------------------------------------------------------------------------------GTCACAGGAACTGTCGGAAATTACTGGCTATTAATTGGAAAAATTTTGAC----AATGTATA--TTTGAAATATAT-AATAATT-------------------AAATAT----------------------------------------TCAAATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG--CTGTATGAAATAA--------------AAG----TT-------------------------------------------------------------------------------------------------------------ATAAAA
droEre2	scaffold_4845:1472011-1472174 -		CATAAAGATCGATTAAAGAAATTTCATTCATGAATGATTTTACACTTATATTTTTCA-------------------------------------------------------------------------------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------CACAAAATTTTTACTTATTACAAAATTCGTTCTTA-------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT-----------------------------------------------------ATTTTCAA-AAAAAAATATAAATATAATTTGCATTCAAAAAAAAA---------A-AAAAAAAAAAA-AAA------------------------------------------------------------------------------------------------------------------------AT
dp5	Unknown_group_592:5878-5967 -		GTGTTG---------------------------------------------------------------------------------------------------TTAAGATACGATATATGCAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAAA----------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA-----------------------------------------------------AATTGAAA----------------------------------AA----------AAAAAAAAAAAA---AAA----TT----------------------------------------------------------------------------------------------------------------CTT
droPer2	scaffold_390:3784-3877 +		TGGCGCTG-------------------------------------------------------------------------------------------------TTAAGATCCGATAGTAGCAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAA------------------------------------------------------------------AAAATTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------TC
droWil2	scf2_1100000004888:986185-986370 +		GATTAAGATCGGGCGA-------------------------------------------------------------------------------------------------------CTATATCATATAGCT-----------------------------------------------------------------------------------------------TCCATAGAAACAATCGGTG-----------GTGAACA-----GTGA-------------------------------------------------------------------------------------------------------CTTTG-------------------------------------------------------ATCAATATCTTCGTTATTTTCTAAGC--------CGTTTTTTCGCAAA---TATTAGAC-------------------------------------------------------------CTTT------------TACACAAAAAACTTT----------------------------TTTTTTTATACA----------------AAA-----------------------------------AA----------------CAA---AAA-AACCGGCCCTCTGGTTCGA--------------------------------CGTGA-------------------------------------------------------------TTTTGC
droVir3	scaffold_13045:1424885-1425072 +		TATTAAGATCGGACCA-------------------------------------------------------------------------------------------------------CTATATCATATAGCT-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACAATT-----AAGTTGTTGT----TTGAAAT--AT------------------------------TTAGCATA-TAATTCTATTGTACAATCTTTTGAATAATGAGGAAGACACTCATTTTGTCGAC--------------CATTAATAAATAAATAAATAAAAGAAAATAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TA-------TCTTGACCAAA-----------------------------------------------------------------------------------------------------CT
droMoj3	scaffold_6473:1204541-1204704 +		TATAAAAATAATT-----------------------------------------------------------------------------------------------------------TATTTCATATATTT-----------------------------------------------------------------------------------------------ATTTTTATATATTTCAAAATTT---------------------TCTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTATTATTAA---TAGTTGAT------------------------------------------------------TGTT---ATTA------------TAAATAAAAAATTTATTTTTGGATTTTCCTAGAAATTTTCTGTTTTTTTTAGACA----------------AAA-----------------------------------AAA---------A-AAAAAAAAAAA-AAA------------------------------------------------------------------------------------------------------------------------AT
droGri2	scaffold_15252:4914694-4914821 +		TAGAAGCATTTGCCGG-------------------------------------------------------------------------------------------------------TTCGTTC----AACT------------------------------------------------------------------------------------------------------------------------------TTAGTGGCTGAACTTTATC----TAT---------------------------------------------------------------------------------------------------TTGTAGATTTGTAACAGAATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAACTAACCCAATGAAAAACTC-----------------------------------------------------ACCCCAAA----------------------------------AAG----------AAAAAAAAAAA---AAA----CA-------------------------------------------------------------------------------------------------------------CTTTGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CATAAGGATCGGCCGA-------------------------------------------------------------------------------------------------------CTATATCCTATAGCT-----------------------------------------------------------------------------------------------GTCATAGAAG-GATC---------------TGCATTGGCATAACTTTGGT----GTTTTTTAAGTTAGAAAGATGTGATTTGGTACAGATTCCATTTTGAGCAAAGTAA----------------------------------------TCTGATTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTA-----------------------------------------------------ATCTGAAA----------------------------------AA----------AAAAAAAAAAAA---AAA----ATCTTTGGTCCAATCT---GCGTTGGCGATG------------------CTTATCGCACCAGATG--GAACCACG---AGCTGTATGAGCTGTACGGGGATGTTGATATAGTAAGCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------------------------------AA----------AAAAAAAAAAAA---AAA----.....................................................................................................................	20	20	1.00	20	20	0	0	0	0	0
.......................................................................................................................................................................................................................................CATAGAAG-GATC---------------TGCATTGGCATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TCATAGAAG-GATC---------------TGCATTGGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GTCATAGAAG-GATC---------------TGCATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGATG--GAACCACG---AGCTGTAT...............................	24	20	0.20	4	3	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGATG--GAACCACG---AGCTGTA................................	23	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TGGTACAGATTCCATTTTGAGCAAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................TTAAGTTAGAAAGATGTGATTTGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------------CTTATCGCACCAGATG--GAACC.............................................	25	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TTAGAAAGATGTGATTTGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---AGCTGTATGAGCTGTACGG....................	22	20	0.10	2	0	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGGGATGTTGATATAGTAAGCC	25	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTTAGAAAGATGTGATTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................TTGGTACAGATTCCATTTTGAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................TAAGTTAGAAAGATGTGATTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---AGCTGTATGAGCTGTACGGT...................	23	20	0.05	1	1	0	0	0	0	0
.ATAAGGATCGGCCGA-------------------------------------------------------------------------------------------------------CTATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCCAATCT---GCGTTGGCGAT.......................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................GGT----GTTTTTTAAGTTAGAAAGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
.......ATCGGCCGA-------------------------------------------------------------------------------------------------------CTATATCCTATAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGCTGTATGAGCTGTACGGGGATG...............	25	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--GAACCACG---AGCTGTATGAGCTGTA.......................	25	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATG--GAACCACG---AGCTGTATGAG............................	25	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACG---AGCTGTATGAGCTGTACT.....................	25	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACCAGATG--GAACCACG---AGCTGTA................................	27	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................T----GTTTTTTAAGTTAGAAAGATGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------CTTATCGCACCAGATG--GAAC..............................................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATG--GAACCACG---AGCTGTATG..............................	24	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACCAGATG--GAACCACG---AGCT...................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................TATATCCTATAGCT-----------------------------------------------------------------------------------------------GTCATAGAAG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGATG--GAACCACG---AGCTG..................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTTTAAGTTAGAAAGATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

CATAACGATCGGCCGA-------------------------------------------------------------------------------------------------------TTATACCTTATAGCT-----------------------------------------------------------------------------------------------GCCATATAACTGATTGATC-----------GGAAATT-----TATTATTTATTTATTTG-----TTTTTATTATGT-ATTTATTATTTATTTAATATTTACCACC------------------------------------------------------------------AAAATATAAGAAGAATAAAAAACGAAATAACAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-AG-------TTTTTCCCAATCT---GCTTG-GTACTGTTTATC-TG---------TTTATGGCACCAAAAA--GCAGCGAAAATTTTCGTTTGCGCTTTATGGT----------------GGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATGAAAATCGGACGA-------------------------------------------------------------------------------------------------------CTATATCTTATAGCT-----------------------------------------------------------------------------------------------GCCATAGAAAAGATCAAGA----------------------------------------------------------------------------------------------------------------------------------------------AA------------TTAATGGCAAAA---------------------AAATTATAACTTCGTTGTTTTTCA--AC--------GAATTTTC--AT-------------------------------------------------------------------------CTTTTAATCTTATATCTAATTTAAATTTCC-----------------------------------------------------AATTA--------------------------------AAA--ATG----------TATAACAAAAA---TAA----TT-------------------------------------------------------------------------------------------------------------CTTGGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GATCAAAATCGGATAA-------------------------------------------------------------------------------------------------------CTCTATCATATAGCT-----------------------------------------------------------------------------------------------GCCATAGGAGAGATCGAAAAAT-----------------------------------------------------------------------------ATATAT------------------------------------------------------------------AGAATTAATGAAAATA---------------------AATTGATAACATCGTTGTTTTTTA--TCGTACGAGCATGATTTTTTGAA---TATCAAGTTTTTAAACAACTTAAACAACTATATCATATAGCTCCCATATGATAGTCGAAAATATGG---AAAA------------TGAATAGAAAAATCG------------------------------------------------------------------------------------------------------------------------T-CA-------TAGCTTCGATGCT---GTTA-GGCTTTATGCATTTTGTTCGACGTAT--------------------------------TTGAGATCTGCAAGGGT--------------ATAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATAATATCCTA------------------------------------TAGCTGCCACACAACTGAAAGTTTGAAATTGCCATAAATTTAGTTTTTTTAAGGTTATGAGGGTCGGATGACTATATTATATAGCT-----------------------------------------------------------------------------------------------CTAATATAAGCAATCAAAA----------------------------------------------------------------------------------------------------------------------------------------------AA------------T----------------AAAAAAAACTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AATTAACT-----TTTCAAT----------------------------------------------------------------------------------------------------TTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATAAGGATCGGCGGA-------------------------------------------------------------------------------------------------------CTATATCCTATAGCT-----------------------------------------------------------------------------------------------CGCATATAACTGATTGATC-----------GGAAATGCCATAACGTTGGT----ATTTGTAAAGTTAGGAAGCTGGGATTTTCTATGGGTTTTATATTTGGCCAATCAA----------------------------------------TCAGACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--A-----------------------------------------------------ATTTCATAAGGATAGAGGGTATTATAATTTTGGTC-AAAA----------------------------G------------------------------------------------------------------------------------------------------------------------TGTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGACGGATCGGGCAA-------------------------------------------------------------------------------------------------------ATATATCTTACAGCTCCCATAGAAAGATATTATATCTTTATATATTTTTTACTTAAATAATGAATTCTGAACTAAATTTTATCAACATTTAAGTGCTATGTAATATAGCTGCCATAGGAACAATCGGAA----------------------------------------------------------------------------------------------------------------------------------------------AA------------TTGGTG--------GGAAAATAATACGAAAC--AAATTATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTCAGTGT---TCTTTGA-------------------CATGT-----------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGAGTGTTCGAGA-----------GAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCGC---AAA----ATCTTTGGTCCAATCT---GCGTGGACGATA------------------TTTATCGCATCAGGTA--CAACCACG---AGCTGTATGAGCTGTACGGTGATGTTGACGTAGCCAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTTTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGGAAAGAAGAGTTTTGGGTTTGATTTTTATTAGAGAAAAGTAA----------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAAATTCCTCTTGTTAAGTTTA-ATATT-----------------------------------------------------ATTTAGAA----------------------------------AAG----------AAAGTCTAAGA---AAG----TT-------------------------------------------------------------------------------------------------------------ATTTGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAAAAAAGAGTGA----------------------------------------------------------------------------------------------------------ATACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--CTT------------------------------TAAGTATAGTGA----------------------------------------TTTTAATTTACAAA------------TTGATA--------AAAAAAAAATGAAGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAA----T------------------------------------------------------------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
TAAAAAAGAGTGA----------------------------------------------------------------------------------------------------------ATACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
TAAAAAAGAGTGA----------------------------------------------------------------------------------------------------------ATACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA--CTT------------------------------TAAGTATAGTGA----------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGAAGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAA----.....................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGCGAAAATTGTATG--------------------------------------------------------------------------------------------------------CTAT-TCATATAGCT-----------------------------------------------------------------------------------------------GCTATAGGAACAATCATTC-----------GAAAATC-----GTGCTTTTGT----TTGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------CATTTTGTTGCAAACGATATTGGAT--------------------------------------------------------GGAATTTTT------------T--------CATTC-------------------------------ATTTAATAACAACAACCACAAAAT-----AATTTTTT----------------------A--------------------------------------------GGT--TATAT---ACATTGA-------------------TATAC---------------------------------------------------------------TTAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----AATTTTTT----------------------A--------------------------------------------GGT--TATAT---ACATTGA-------------------........................................................................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

AAAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAA-AAA------ATTGTTGTAAAATCCACGTTTA-GGCAATC------------------CACGTTTTAACAGGAATTAAATTAT----------------------------------------GAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CACG-----------C-------------------------------------------------------------------------------------------------------CTATAACACATAGCT-----------------------------------------------------------------------------------------------GTCACAGGAACTGTCGGAAATTACTGGCTATTAATTGGAAAAATTTTGAC----AATGTATA--TTTGAAATATAT-AATAATT-------------------AAATAT----------------------------------------TCAAATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGG--CTGTATGAAATAA--------------AAG----TT-------------------------------------------------------------------------------------------------------------ATAAAA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CATAAAGATCGATTAAAGAAATTTCATTCATGAATGATTTTACACTTATATTTTTCA-------------------------------------------------------------------------------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------CACAAAATTTTTACTTATTACAAAATTCGTTCTTA-------------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT-----------------------------------------------------ATTTTCAA-AAAAAAATATAAATATAATTTGCATTCAAAAAAAAA---------A-AAAAAAAAAAA-AAA------------------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAAAAAAAA---------A-AAAAAAAAAAA-AAA------------------------------------------------------------------------------------------------------------------------..	27	8	0.13	1	1	0	0	0	0	0	0
................AGAAATTTCATTCATGAATGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA---------A-AAAAAAAAAAA-A............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0

dp5

GTGTTG---------------------------------------------------------------------------------------------------TTAAGATACGATATATGCAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAAA----------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA-----------------------------------------------------AATTGAAA----------------------------------AA----------AAAAAAAAAAAA---AAA----TT----------------------------------------------------------------------------------------------------------------CTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................TACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAAA----------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	1.50	9	1	5	0	0	0	0	0	1	2	0
...............................................................................................................................TACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.50	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA----------------------------------AA----------AAAAAAAAAAAA---AAA----.....................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAAA----------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..........................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
GTGTTG---------------------------------------------------------------------------------------------------TTAAGATACGATATATGCAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.18	2	0	2	0	0	0	0	0	0	0	0
GTGTTG---------------------------------------------------------------------------------------------------TTAAGATACGATATATGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.18	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................GTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAAA----------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAAA----------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................TGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.17	2	0	1	0	0	0	0	0	1	0	0
...............................................................................................................................TACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................TGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................GATACGATATATGCAATGTACGGAT-----------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0
GTGTTG---------------------------------------------------------------------------------------------------TTAAGATACGATATATGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................CAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................TTAAGATACGATATATGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
GTGTTG---------------------------------------------------------------------------------------------------TTAAGATACGATATATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................CAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................ATGCAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................AATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................TATGCAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------AA----------AAAAAAAAAAAA---AAA----TT----------------------------------------------------------------------------------------------------------------...	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGGCGCTG-------------------------------------------------------------------------------------------------TTAAGATCCGATAGTAGCAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAATAAA------------------------------------------------------------------AAAATTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------TC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.60	32	0	32	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-...........................................................................................................................	23	20	1.05	21	0	21	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A..........................................................................................................................	22	20	1.00	20	0	20	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A..........................................................................................................................	24	20	0.80	16	16	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A..........................................................................................................................	23	20	0.60	12	12	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------..	29	20	0.40	8	8	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------A.	36	3	0.33	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.............................................................................................................................	27	20	0.30	6	6	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-...........................................................................................................................	28	20	0.25	5	0	5	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------..	18	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------T.	23	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................CAATGTACGGAT-----------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------AACGCTTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------T.	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----------------------------------------------------------------------------------------------------------------------T.	24	20	0.05	1	1	0	0	0	0	0

droWil2

GATTAAGATCGGGCGA-------------------------------------------------------------------------------------------------------CTATATCATATAGCT-----------------------------------------------------------------------------------------------TCCATAGAAACAATCGGTG-----------GTGAACA-----GTGA-------------------------------------------------------------------------------------------------------CTTTG-------------------------------------------------------ATCAATATCTTCGTTATTTTCTAAGC--------CGTTTTTTCGCAAA---TATTAGAC-------------------------------------------------------------CTTT------------TACACAAAAAACTTT----------------------------TTTTTTTATACA----------------AAA-----------------------------------AA----------------CAA---AAA-AACCGGCCCTCTGGTTCGA--------------------------------CGTGA-------------------------------------------------------------TTTTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..TTAAGATCGGGCGA-------------------------------------------------------------------------------------------------------CTATATCATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................A-----GTGA-------------------------------------------------------------------------------------------------------CTTTG-------------------------------------------------------ATCAATATCTTCGTTA............................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.ATTAAGATCGGGCGA-------------------------------------------------------------------------------------------------------CTATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................CA-----GTGA-------------------------------------------------------------------------------------------------------CTTTG-------------------------------------------------------ATCAATATCTTCGTT.............................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0

droVir3

TATTAAGATCGGACCA-------------------------------------------------------------------------------------------------------CTATATCATATAGCT-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACAATT-----AAGTTGTTGT----TTGAAAT--AT------------------------------TTAGCATA-TAATTCTATTGTACAATCTTTTGAATAATGAGGAAGACACTCATTTTGTCGAC--------------CATTAATAAATAAATAAATAAAAGAAAATAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TA-------TCTTGACCAAA-----------------------------------------------------------------------------------------------------CT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	1.50	15	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	1	0	1	0	0	1	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	1.30	26	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	1	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.00	20	0	0	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	10	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAGACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.90	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACAATT-----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AACGATCGGTC-----------GACAATT-----AAGTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.50	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTGTACAATCTTTTGAATAATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TAGGAACGATCGGTC-----------GACAATT-----AAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.40	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.40	8	0	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.35	7	1	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAGACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.30	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGAC--------------CATTAATAAATAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGAC--------------CATTAATAAATAAATAAATAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TGAATAATGAGGAAGACACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTAGCATA-TAATTCTATTGTACAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATAATGAGGAAGACACTCATTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTACAATCTTTTGAATAATGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TAAGATCGGACCA-------------------------------------------------------------------------------------------------------CTATATCATATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTGTACAATCTTTTGAATAATGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGAC--------------CATTAATAAATAAATAAATAAAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................	30	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAGCATA-TAATTCTATTGTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAGCATA-TAATTCTATTGTACAATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCCATAGGAACGATCGGTC-----------GACAATT-----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGAC--------------CATTAATAAATAAATAAATAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TAAGATCGGACCA-------------------------------------------------------------------------------------------------------CTATATCATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TACAATCTTTTGAATAATGAGGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGAC--------------CATTAATAAATAAATAAATA............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ATCTTTTGAATAATGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATAGGAACGATCGGTC-----------GACAATT-----AAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTAGCATA-TAATTCTATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCCATAGGAACGATCGGTC-----------GAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCCATAGGAACGATCGGTC-----------GACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGAC--------------CATTAATAAATAAATAAATAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAGCATA-TAATTCTATTGTACAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TGAATAATGAGGAAGACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTAGCATA-TAATTCTATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTACAATCTTTTGAATAATGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CATATAGCT-----------------------------------------------------------------------------------------------GCCATAGGAACGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................ATCTTTTGAATAATGAGGAAGACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TCGGACCA-------------------------------------------------------------------------------------------------------CTATATCATATAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAATCTTTTGAATAATGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCCATAGGAACGATCGGTC-----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TACAATCTTTTGAATAATGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTGTACAATCTTTTGAATAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GTACAATCTTTTGAATAATGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TTTTGAATAATGAGGAAGACACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAGCATA-TAATTCTATTGTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TACAATCTTTTGAATAATGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAGCATA-TAATTCTATTGTACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................ATAGCT-----------------------------------------------------------------------------------------------GCCATAGGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................AATCTTTTGAATAATGAGGAAGACACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGAC--------------CATTAATAAATAAATAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GACCA-------------------------------------------------------------------------------------------------------CTATATCATATAGCT-----------------------------------------------------------------------------------------------GCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGAC--------------CATTAATAAATAAATAAATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................T-----------------------------------------------------------------------------------------------GCCATAGGAACGATCGGTC-----------GACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ATCTTTTGAATAATGAGGAAGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................GCATA-TAATTCTATTGTACAATCTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTTGAATAATGAGGAAGACACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATAAAAATAATT-----------------------------------------------------------------------------------------------------------TATTTCATATATTT-----------------------------------------------------------------------------------------------ATTTTTATATATTTCAAAATTT---------------------TCTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTATTATTAA---TAGTTGAT------------------------------------------------------TGTT---ATTA------------TAAATAAAAAATTTATTTTTGGATTTTCCTAGAAATTTTCTGTTTTTTTTAGACA----------------AAA-----------------------------------AAA---------A-AAAAAAAAAAA-AAA------------------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------AAA-----------------------------------AAA---------A-AAAAAAAAAA...............................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA----------------AAA-----------------------------------AAA---------A-AAAAAAAAA................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droGri2

TAGAAGCATTTGCCGG-------------------------------------------------------------------------------------------------------TTCGTTC----AACT------------------------------------------------------------------------------------------------------------------------------TTAGTGGCTGAACTTTATC----TAT---------------------------------------------------------------------------------------------------TTGTAGATTTGTAACAGAATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAACTAACCCAATGAAAAACTC-----------------------------------------------------ACCCCAAA----------------------------------AAG----------AAAAAAAAAAA---AAA----CA-------------------------------------------------------------------------------------------------------------CTTTGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-7.0	-6.8	-6.8	-6.2

dan_1176

scaffold_13082:400415-400565 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads