ID:

dan_1164

 Coordinate:

scaffold_13077:127104-127254 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.7 -6.4 -6.3

Flybase annnotation

CDS [Dana\GF21877-cds]; exon [dana_GLEANR_5809:3]; intron [Dana\GF21877-in]

Repeatable elements

NameClassFamilyStrand
Hoana1DNAhAT-hobo-
mature
  1. scaffold_451:1119-1141 -
  2. scaffold_8594:33-55 -
  3. scaffold_9383:1969-1991 -
  4. scaffold_10477:840-862 -
  5. scaffold_12929:2864501-2864523 -
  6. scaffold_12947:534841-534863 -
  7. scaffold_12947:1571980-1572002 -
  8. scaffold_13002:61801-61823 -
  9. scaffold_13010:441100-441122 -
  10. scaffold_13077:219223-219245 -
  11. scaffold_13082:2508267-2508289 -
  12. scaffold_13137:656205-656227 -
  13. scaffold_13144:86852-86874 -
  14. scaffold_13230:2122478-2122500 -
  15. scaffold_13238:53039-53061 -
  16. scaffold_13261:4337-4359 -
  17. scaffold_13337:22744028-22744050 -
  18. scaffold_13339:1336693-1336715 -
  19. scaffold_13417:1966660-1966682 -
  20. scaffold_13767:491592-491614 -
  21. scaffold_7612:1228-1250 +
  22. scaffold_8284:1623-1645 +
  23. scaffold_12911:1858394-1858416 +
  24. scaffold_13034:1583205-1583227 +
  25. dan_1164  scaffold_13077:127141-127163 +
  26. scaffold_13077:602035-602057 +
  27. scaffold_13099:1802114-1802136 +
  28. scaffold_13137:294936-294958 +
  29. scaffold_13228:803729-803751 +
  30. scaffold_13260:1126526-1126548 +
  31. scaffold_13335:2935715-2935737 +
  32. scaffold_13335:3203902-3203924 +
  33. scaffold_13335:3270186-3270208 +
  34. scaffold_13335:3274084-3274106 +
  35. scaffold_13337:22718459-22718481 +
  36. scaffold_13339:153475-153497 +
  37. scaffold_13340:22329069-22329091 +
  38. scaffold_13417:3303146-3303168 +
  39. scaffold_13417:6646263-6646285 +
  40. scaffold_13770:624761-624783 +
  41. scaffold_3946:632-654 -
  42. scaffold_7655:36-58 -
  43. scaffold_9426:4587-4609 -
  44. scaffold_9742:4353-4375 -
  45. scaffold_12718:1873-1895 -
  46. scaffold_12947:795520-795542 -
  47. scaffold_13034:605185-605207 -
  48. scaffold_13045:1298960-1298982 -
  49. scaffold_13089:352870-352892 -
  50. scaffold_13089:356693-356715 -
  51. scaffold_13172:40980-41002 -
  52. scaffold_13228:620641-620663 -
  53. scaffold_13228:663957-663979 -
  54. scaffold_13250:1953560-1953582 -
  55. scaffold_13260:588946-588968 -
  56. scaffold_13339:697831-697853 -
  57. scaffold_13417:3777164-3777186 -
  58. scaffold_13767:1089904-1089926 -
  59. scaffold_13770:99985-100007 -
  60. scaffold_13770:135525-135547 -
star
  1. scaffold_12935:64647-64673 -
  2. dan_1164  scaffold_13077:127104-127130 +
  3. scaffold_13077:180826-180852 -
  4. scaffold_13077:436469-436495 -
  5. scaffold_13099:1794780-1794806 +
  6. scaffold_13137:294899-294925 +
  7. scaffold_13260:1873738-1873764 +
  8. scaffold_13335:2935678-2935704 +
  9. scaffold_13417:3880977-3881003 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCGAGTTTCATATGGATCGGCCGACTATATTCTATAGACGCCATATAACTGAACGATCGGAAATGGCACAAACCTTAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTTATTTCTTGTTTTTTTGTAATTTGAAACAAAATTCGTGTTTTGTGTGACGTAAACTCATATTATTGGGATTGATTTCAGGTTTCATCTATTAACCGAGTATTGAGAAACTTGGCCTCTCAGAAAGAGCA
**************************************************....((.(((((..(((......((((......)))).....)))..)))))...))...********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 M044
female body
 V039
embryo
 V105
male body		 V055
head
...............................................................................................................................................................................................................................TGAGAAACGTGGCCACTGA......... 19 3 20 2.95 59 11 27 13 2 3 3
..............................................................................................................................................................................................................................TTGAGAAACGTGGCCACTGAGA....... 22 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................GTATATCAACTTCGGCTCCGCCC............................................................................................................................................. 23 0 20 0.60 12 12 0 0 0 0 0
...............................................................................................................................................................................................................................TGAGAAACGTGGCCACTCAC........ 20 3 4 0.25 1 1 0 0 0 0 0
...............................................AACTGAACGATCGGAAATGGCAC..................................................................................................................................................................................... 23 0 20 0.20 4 0 0 4 0 0 0
...............................................................................................................................................................................................................................TGAGAAACTTGGCCACTCAAC....... 21 3 5 0.20 1 0 0 0 1 0 0
.............................................ATAACTGAACGATCGGAAATGGCAC..................................................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
..................................................TGAACGATCGGAAATGGCACAAACCTT.............................................................................................................................................................................. 27 0 9 0.11 1 1 0 0 0 0 0
......................................................CGATCGGAAATGGCACAAACCTTAACTG......................................................................................................................................................................... 28 0 10 0.10 1 1 0 0 0 0 0
..................................................TGAACGATCGGAAATGGCACAAACCTTT............................................................................................................................................................................. 28 1 10 0.10 1 1 0 0 0 0 0
................................................ACTGAACGATCGGAAATGGCACA.................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
..........................................................CGGAAATGGCACAAACCTTAACTGCAAG..................................................................................................................................................................... 28 0 11 0.09 1 0 0 1 0 0 0
.............................................................AAATGGCACAAACCTTAACTGCAAGGG................................................................................................................................................................... 27 0 12 0.08 1 1 0 0 0 0 0
...............................................................ATGGCACAAACCTTAACTGCAAGGGCA................................................................................................................................................................. 27 1 12 0.08 1 1 0 0 0 0 0
...........................................................GGAAATGGCACAAACCTTAACTGCAAGG.................................................................................................................................................................... 28 0 13 0.08 1 1 0 0 0 0 0
...........................................................GGAAATGGCACAAACCTTAACTGC........................................................................................................................................................................ 24 0 13 0.08 1 1 0 0 0 0 0
....................................................AGCGATCGGAAATGGCACAAACCTT.............................................................................................................................................................................. 25 1 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TAGGACTCTCAGAAAGAGCT 20 3 14 0.07 1 0 0 0 0 0 1
...............................................AACTGAACGATCAGAAATGGCACAAAAC................................................................................................................................................................................ 28 2 16 0.06 1 1 0 0 0 0 0
..................................................TGAACGATCGGAAATGGCACAAACCC............................................................................................................................................................................... 26 1 16 0.06 1 1 0 0 0 0 0
....................................AGACGCCATATAACTGAACGATC................................................................................................................................................................................................ 23 0 17 0.06 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................GAATATTGACAAACTTGGTC.............. 20 3 18 0.06 1 0 0 0 0 1 0
................................................ACTGAACGATCGGAAATGGCACAAAC................................................................................................................................................................................. 26 0 19 0.05 1 1 0 0 0 0 0
...............................................AACTGAACGATCGGAAATGGCA...................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
..........................................CATATAACTGAACGATCGGAAATGGC....................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
.....GTTTTATATGGATCGGCCGAGT................................................................................................................................................................................................................................ 22 2 20 0.05 1 0 0 0 0 1 0
.............................................ATAACTGAACGTTCGGAAATGGCAC..................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................ATCAACTTCGGCTCCGCCCGA........................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.............................................................AAATAGCACAAACCTTTA............................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 1 0 0
..............................................TAACTGAGCGATCGGAAATGGCACAAA.................................................................................................................................................................................. 27 1 20 0.05 1 0 0 0 0 1 0
............................................TATAACTGAACGATCGGAAATGGCACA.................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..................................................................................CAAGGGTATATCAACTTCGGC.................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..........................................................CAGAACTGGCACAAACCT............................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1
.................................................................................................................GTTACCTTGTATTTCTTGTA...................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

CGGCTCAAAGTATACCTAGCCGGCTGATATAAGATATCTGCGGTATATTGACTTGCTAGCCTTTACCGTGTTTGGAATTGACGTTCCCATATAGTTGAAGCCGAGGCGGGCTTCAATCGAAAATAAAGAACAAAAAAACATTAAACTTTGTTTTAAGCACAAAACACACTGCATTTGAGTATAATAACCCTAACTAAAGTCCAAAGTAGATAATTGGCTCATAACTCTTTGAACCGGAGAGTCTTTCTCGT
*********************************************************************************************************************************************....((.(((((..(((......((((......)))).....)))..)))))...))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V055
head
 V105
male body
..............................................................................................................................................................................................................................AACTCTTTGCACCGGTGACT......... 20 3 5 17.20 86 29 30 24 3 0 0
.............................................................................................................................................................................................................................CAACTCTTTGCACCGGTGAGT......... 21 3 2 3.50 7 7 0 0 0 0 0
...............................................................................................................................................................................................................................ACTCTTTGCACCGGTGACT......... 19 3 20 2.70 54 11 15 23 5 0 0
.................................................................CCGTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 25 0 13 1.31 17 16 1 0 0 0 0
.........................................................................................................................................................................................AGCCTTAACTAAAGTCCATAG............................................. 21 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................GATAACTCTTTGAACACGAGAGT......... 23 3 1 1.00 1 0 0 0 0 0 1
..............................................................................................................................................................................................................................AACTCTTTGCACCGGTGAGT......... 20 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TAACTCTTTGAACACGAGAGT......... 21 2 1 1.00 1 0 0 0 0 1 0
..............................................................TTACCGTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 28 0 11 0.73 8 7 1 0 0 0 0
...............................................................................................................................................................................................................................ACTCTTTGCACCGGTGACTC........ 20 3 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CAACTCTTTGCACCGGAGAC.......... 20 3 3 0.33 1 0 0 0 1 0 0
.............................................................................TTGACGTTCCCATATAGTTGAAGCC..................................................................................................................................................... 25 0 20 0.25 5 5 0 0 0 0 0
............................................................CTTTACCGTGTTTGGAATTGACGTT...................................................................................................................................................................... 25 0 13 0.23 3 2 0 0 1 0 0
...........................................................CCTTTACCGTGTTTGGAATTGACGTT...................................................................................................................................................................... 26 0 13 0.23 3 2 0 0 1 0 0
..................................................................CGTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 24 0 13 0.23 3 3 0 0 0 0 0
..............................................................TTACCGTGTTTGGAATTGACGTTCC.................................................................................................................................................................... 25 0 14 0.21 3 2 1 0 0 0 0
..............................................................................................................................................................................................................................AACTCTTTGCACCGGTGA........... 18 2 5 0.20 1 0 0 0 1 0 0
.................................................................CCGTGTTTGGAATTGACGTTCCCATAT............................................................................................................................................................... 27 0 10 0.20 2 2 0 0 0 0 0
...............................................................TACCGTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 27 0 12 0.17 2 1 1 0 0 0 0
................................................TGACTTGCTAGCCTTTACCGTGTTT.................................................................................................................................................................................. 25 0 20 0.15 3 0 1 0 2 0 0
.............................................................................................................................................................................................................................CAACTCTTTGCACCGGTGA........... 19 3 20 0.15 3 0 2 1 0 0 0
.................................................................CCGTGTTTGGAATTGACGTTCTCAT................................................................................................................................................................. 25 1 14 0.14 2 2 0 0 0 0 0
..............................................................................................................................................................................................................................CACTCTTTGCACCGGTGAGT......... 20 3 7 0.14 1 1 0 0 0 0 0
.................................................................CCGTGTTTGGAATTGACGTTCCC................................................................................................................................................................... 23 0 14 0.14 2 2 0 0 0 0 0
...............................................TTGACTTGCTAGCCTTTACCGTGTTT.................................................................................................................................................................................. 26 0 18 0.11 2 2 0 0 0 0 0
..................................................ACTTGCTAGCCTTTACCGTGTTTGGA............................................................................................................................................................................... 26 0 9 0.11 1 0 1 0 0 0 0
...............................................................CACCGTGTTTGGAATTGACGTTCCCATAT............................................................................................................................................................... 29 1 9 0.11 1 1 0 0 0 0 0
...................................................................GTGTTTGGAATTGACGTTCCCATAT............................................................................................................................................................... 25 0 10 0.10 1 0 0 0 1 0 0
.................................................................CCGTGTTTGGAATTGACGTTCCCATATAG............................................................................................................................................................. 29 0 10 0.10 1 1 0 0 0 0 0
..................................................................CGTGTTTGGAATTGACGTTCCCATATAG............................................................................................................................................................. 28 0 10 0.10 1 1 0 0 0 0 0
.........................................................AGCCTTTACCGTGTTTGGAATTGACGTT...................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0 0
............................................................CTTTACCGTGTTTGGAATTGACGTTCCC................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................AAACTCTTTGCACCGGAGACT......... 21 3 11 0.09 1 0 0 0 1 0 0
..............................................................TTACCGTGTTTGGAATTGACGTTCCCATC................................................................................................................................................................ 29 1 11 0.09 1 1 0 0 0 0 0
..............................................................TTACCGTGTTTGGAATTGACGTTCCCA.................................................................................................................................................................. 27 0 12 0.08 1 1 0 0 0 0 0
..............................................................TTACCGTGTTTGGAATTGACGTTCCC................................................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0 0
.....................................................TGCTAGCCTTTACCGTGTTTGGAATT............................................................................................................................................................................ 26 0 12 0.08 1 0 1 0 0 0 0
.....................................................................................................................CCAAAATAAAGAACAAAAA................................................................................................................... 19 1 12 0.08 1 1 0 0 0 0 0
..............................................................CTACCGTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 28 1 12 0.08 1 1 0 0 0 0 0
.....................................................................GTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0
.................................................................CCGTGTTTGGAATTGACGTTCCCATA................................................................................................................................................................ 26 0 13 0.08 1 1 0 0 0 0 0
.................................................................CCGTGTTTGGAATTGACGTTCCCATC................................................................................................................................................................ 26 1 13 0.08 1 1 0 0 0 0 0
.................................................................CCGTGTTTGGAATTGACGTGCCCAT................................................................................................................................................................. 25 1 13 0.08 1 1 0 0 0 0 0
...........................................................CCTTTACCGTGTTTGGAATGGACGT....................................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0 0
.............................................................TTTACCGTGTTTGGAATTGACGTTCC.................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0
..............................................................TTACCGTGTTTGGAATTGACGTTC..................................................................................................................................................................... 24 0 14 0.07 1 0 0 0 1 0 0
.................................................................CAGTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 25 1 14 0.07 1 1 0 0 0 0 0
..................................................................CTTGTTTGGAATTGACGTTCCCAT................................................................................................................................................................. 24 1 15 0.07 1 0 0 0 1 0 0
.............................................................TTTACCGTGTTTGGAATTGACGGT...................................................................................................................................................................... 24 1 15 0.07 1 1 0 0 0 0 0
..............................................................TTACCGTGTTTGGAATTGACGTT...................................................................................................................................................................... 23 0 15 0.07 1 1 0 0 0 0 0
...............................................................TACCGTGTTTGGAATTGACGTTC..................................................................................................................................................................... 23 0 15 0.07 1 0 0 0 1 0 0
.............................................................TTTACCGTGTTTGGAATTGACGT....................................................................................................................................................................... 23 0 15 0.07 1 0 0 0 1 0 0
...............................................................TACCGTGTTTGGAATTGACGTTCCAAT................................................................................................................................................................. 27 1 15 0.07 1 1 0 0 0 0 0
.............................................................TTTACCGTGTTTGGAATTGACGTT...................................................................................................................................................................... 24 0 15 0.07 1 1 0 0 0 0 0
...............................................................CACCGTGTTTGGAATTGACGTTCCAAT................................................................................................................................................................. 27 2 15 0.07 1 1 0 0 0 0 0
....................................TCTGCGGTATATTGACTTGCTAGC............................................................................................................................................................................................... 24 0 16 0.06 1 0 1 0 0 0 0
...............................................................TACCTTGTTTGGAATTGACGTTC..................................................................................................................................................................... 23 1 16 0.06 1 0 0 0 1 0 0
.....................................CTGCGGTATATTGACTTGCTAGCCT............................................................................................................................................................................................. 25 0 17 0.06 1 0 0 1 0 0 0
..............................................ATTGACTTGCTAGCCTTTACCGTGTTTG................................................................................................................................................................................. 28 0 17 0.06 1 1 0 0 0 0 0
..........................................................................................................................................................................................ACCCAAACTACAGTCCAAAT............................................. 20 3 17 0.06 1 1 0 0 0 0 0
................................................................................................................................................................................CAGTATAATCACCCTAAATA....................................................... 20 3 19 0.05 1 0 0 0 1 0 0
.....................................................................................................................CGAAAATTACGAACAAAAAA.................................................................................................................. 20 2 19 0.05 1 0 0 0 1 0 0
................................................CGACTTGCTAGCCTTTACCGTGTTT.................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
...............CTAGCCGGCTGATATAAGATATC..................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..........................................................................GAATTGACGTTCCCATATAGTTGAAGCC..................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................CGAGGCGGGCTTCAATCGA................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0
.................................................................................CGTTCCCATATAGTTGAAGCCG.................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13077:127054-127304 + dan_1164 GCC--GAGTTTCATATGGATCGGCCGACTATATTCT----ATAGACGCCATATAACTGAACGATCGGAAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTGCAAGGGTAT-ATCAACTTCGGCTCCGCCCGAAGTTAGCTTTTATTTCTTGTTTTTTTG-----------------------------------------------------------------------TAATTTGAAACAAAA-TTC-----GT------------------------------------------------------------------------------GTTTTGT----------------------GTGACGTAAACTCATATTATTG--------------------G-----------------GATTGATTTCAGGTTTCATCTATTAACCGAGTATTGAG-------AAACTTGGCCT----------------------CT---CAGAAAGA---GCA
droBip1 scf7180000393601:32774-32986 - TCT--------CATAAGGATTGGCCAACTATATCCG----ATGTTTGCGATATATATCCTGT------------------------------------------------------------TTT----------------------------AACTGCAATGGTAT-ATCAACTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTCTTGTTTTTAGATTTTTTATTTTAAATTATTGGTTTTATTATGATGTAATCATAAGGATGTTTGGATATATATCCGGTTTTAGCTGCA-AGAG--------------------------------------------------------------------------------------------------TA------------------------T----------------------------------------------------------------------------------------------AT-------AAACTTCGGC---------------------------------------TCT
droKik1 scf7180000301603:7089-7291 - AA------TTTCATGAAAATCGGACAACTATATGTT----ATAGCTGCCATAGGAACGATCGG----GAAA-----TTAATAGGAG---AAAAA------------TT------------------------------------------------------------A-TAACTTCG------------------------------TTTTTTTT-----------------------------------------------------------------------AACGTAC-------T-TTC-----AT------------------------------------------------------------------------------CTACTCT----------------------GAGATATAAGCTCATTTTATT--------------------ATTCTAGAATTTTGGTAT-----------------AAA-TTTAA--TAAAAATCGGA-------AAAC------------TATATCATATAGCTAC---CATAGAAACGA---CCA
droFic1 scf7180000453415:4069-4284 + GAATTAAATTTGATCAAAATCGAACAACTATATCAT----ATAGCTCCCATATGATCTATAG-TCGGAAATATGGATTTG--------------TTCGACATATTT----------------GAT----------------------------GACTGCAAGGGTAT-ATAAGCTTCGGCTT--GCCGAAGCTAGCTT-CCTTTCTTGTTTTTT-A-----------------------------------------------------------------------TTATTTA-----------------------------------------------------------------------------------------------------------GTTCAAGAATTCAGCTTTCAAAAAGTAATTTAATTTTTTA--------------------ATTTAATTTTTTATTTAT-----------------T------------------------------------------------------------------------------AA
droEle1 scf7180000491104:2251444-2251608 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCAAGGGTAT-ATGAACTTCGGCTT--GCCGAAGTTTGCTT-TCTTTCTTGTTTTTTTT-----------------------------------------------------------------------TTGTT---------------------------------------------------------------AAAAA-------------------AA----------GTTTTTTTTTGAGC----------------------------ATTCTTTTA-------------TCTTTAGT---------------TGAGTTTTTTTCGTGTATTCTCAGTCCAAAAGATTTTAAG-------TTTTTTGGGAT----------------------CA---CAGATAGA-----A
droRho1 scf7180000778036:20080-20334 + ACC--AAATTTCATAAGCTTCGGCCGACTATATCCT----ATAGCTGTCATATAACTGAACGATCAGAAATG-------A--------------CATAGC------TTACAAAAT---------A----------------------------TTCTGCAAGGGTAT-ATCAACTTCGGCTCCGCTCGAAGTTAGCTTTCCTTTCTTGTTATTT-A-----------------------------------------------------------TATA--------TGTC--G---------------------------------------------------------------------------------------ACACT----------ACAACTTAT----------------------------AGTATTTTGGCGACTTCTACAGTTTTGACT---------------TGAA------------------TTCGATTATTAGATTTAGTTTAAGGCATTCC----ATTCAG------------AAGAGCA---CC-GGCAA---ACT
droBia1 scf7180000302143:2127588-2127830 - TG---------------GATCAGAAAACTATATTAC----ATAGATCCCATACAAATAATTAACAAAATATA-------A--------------AAAAA-------------------------------------------------------ACTGTAAAAAAAC-ATAAG-TTCGGT-------G----------------------TTTTTT-----------------------------------------------------------------------GACATAT-------T-AACTA---CTCTACTCTTGGGCAGATTAAATATTTTAGACTTTTTCTTAAATAA------------------------AAAAAGTTATGTTTCGT----------------------TTTTAGTAAACTTATACGGTA----------------GTGAAT---------------TAAT------------------ATTAAACAATATCTTAAAATGTTGGTAACCTCTCTG----------------------CA------AGAAT---GTA
droTak1 scf7180000410771:9520-9774 - AA------TTTGATCAAAATCGGACGACTATATCAT----ATAGCTGCCATAGGAACGATCGG----AAAA-----TTAATG--AG---AAATA------------TTAGAAA--ATTAACA--TTTTTGCGATTTGTTAATTAATAGGAATGATCTGCAAGGGTAT-ATAAGCTTCGGCT--GGCCGAAGCTAGCTT-CCTTTCTTGTTTTTGTT-----------------------------------------------------------------------TC----------------A-----AA------------------------------------------------------------------------------GTGTCT---TGCTC----------------------------AG-ACACTG--------------------A-----------------GCATTTCCGTGTGTTCTATTTAGGAACCTGTTTTCCTG----AG-ACACTTTGCCT----------------------TT---CAGAA---------
droEug1 scf7180000408984:217460-217524 - TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------GATTAATTGCAGGTTTCATCAATTAACCGAGTTTTGCG-------TAACCTGGCCT----------------------CA---CAGAAGGA---GCA
dm3 chr4:1017120-1017187 + TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCATCTATTAATCGAGTCTTACG-------TAACCTGGCCT----------------------CA---CAAAAGGA---GCA
droSim2 4:806287-806354 + TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCATCTATTAATCGAGTCTTACG-------AAACCTGGCTT----------------------CA---CAAAAGGA---GCA
droSec2 scaffold_40:60093-60214 + TTTT----------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------C-----------------------------------------------------------------------CAATT----------------------------------------------------------------GGAAATGTACATATTGTGTTCATGTATTTT----------ATTGTACGC----------------------------AGTATACTG--------------------G-----------------GATTATTTGCAGGTTTCATCTATTAATCGAGTCTTACG-------AAACCTGGCTT----------------------CA---CAAAAGGA---GCA
droYak3 4:1087752-1087888 + TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACACGTTGTTTTC-----------------------------------------------------------------------CAATT---------------------------------------------------------------AAGAAATGTACATATTGTGTTCATGAATTTT----------ATTGTACGC----------------------------AGTATTCTG--------------------G-----------------GATTAATTGCAGGTTTCATCTATTAACCGAGTCTTACG-------TAACCTAGCTT----------------------CA---CAAAAGGA---GCA
droEre2 scaffold_4512:254113-254179 - AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTAATTGCAGGTTTCATCTATTAACCGAGTCTTACG-------TAACCTAGCTT----------------------CA---CAAAAGGA---GCA
dp5 Unknown_group_14:58626-58685 - TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCAGGTTTCATCTATAAATCGAGTCTTGCG-------CAATTTGGCAT----------------------CG---CAAAAGGA---GCA
droPer2 scaffold_26:1237719-1237786 - AAAA----------------------------------------------------------------------------------------------------------------------TTT----------------------------ATCTGCAAGGGTGTCATAGACTTCGGC---GCCCGAAGTTAGATTTTCTTTATAGTTTTTTTA-----------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004965:650575-650747 - GCC--AAATTTGATCAAGATGGGGTGACTATATAAT----ATAGGTCCCATAGGAACGATCGGTCAAAAACA-------G------------------------------------------------------------------------------------------TGACTTCGACGGCGTTAAAATTTGAATTCCCTTGCAAATTTTTTTGTT----ACTTT------------------------------------------------TTTCTTACCTAGCAGTC-AAAGTAGAA-ATA-----AC------------------------------------------------------------------------------ATTTTA------------------------TAC--------------------------------------------------------------------------------------------------AA-AGAC--T---------------------------------------TATGTT
droVir3 scaffold_12723:4752026-4752222 - GG----------------ATCGGACAACTATATAAT----ATTGCTGCTATAGAGACGATCGGTCGAAAA---------GTAGGTTCCTGTA--------------TAACAAAATATTATTT--T----------------------------TTCCACGAAATTTCCATT----------------AAATTCAGCATTTAT-TTTTATATTTTTA-----------------------------------------------------------------------TAATT-GAAATAAAAATAT--GAAAT------------------------------------------------------------------------------ATTTTA------------------------TGG--------------------------------------------------------------------------------------------------AA-ACGC------------TTTATTATATTGTAATT--TATTGGAGCT-TACACC
droMoj3 scaffold_6359:4463765-4463846 - TTTT----------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------TTTTTTTTCTTTTTG-----------------------------------------------------------------------TATTTTA-------T-CTC-----AT------------------------------------------------------------------------------GTTTTTT----------------------GTTGTGTAACTTTAGGTTGTT--------------------GTTCTTGTTATTAGTTAT-----------------T------------------------------------------------------------------------------AT
droGri2 scaffold_15112:4689779-4689915 - AT------------------CGGACTACCATATCCCATATATAGCTACAATAGGAATAATCGG----AAGGT-------G--------------CTTGACT---------------------CCT----------------------------TTCCGCAAGAGTAT-TTTAACTG-----------AAAGTCATTCTCTTCTGTTTATTTGGTTA-----------------------------------------------------------------------TGTAA-GAAATAAATATGC-----GC------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------TTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCC--GAGTTTCATATGGATCGGCCGACTATATTCT----ATAGACGCCATATAACTGAACGATCGGAAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTGCAAGGGTAT-ATCAACTTCGGCTCCGCCCGAAGTTAGCTTTTATTTCTTGTTTTTTTG-----------------------------------------------------------------------TAATTTGAAACAAAA-TTC-----GT------------------------------------------------------------------------------GTTTTGT----------------------GTGACGTAAACTCATATTATTG--------------------G-----------------GATTGATTTCAGGTTTCATCTATTAACCGAGTATTGAG-------AAACTTGGCCT----------------------CT---CAGAAAGA---GCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................GTAT-ATCAACTTCGGCTCCGCCC......................................................................................................................................................................................................................................................................................................................................................................................................23200.60120120000
.....................................................AACTGAACGATCGGAAATG-------G--------------CAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.204400000
...................................................ATAACTGAACGATCGGAAATG-------G--------------CAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
........................................................TGAACGATCGGAAATG-------G--------------CACAAAC---------------------CTT----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2790.111010000
............................................................CGATCGGAAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................28100.101010000
........................................................TGAACGATCGGAAATG-------G--------------CACAAAC---------------------CTT----------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................28100.101010000
......................................................ACTGAACGATCGGAAATG-------G--------------CACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102020000
................................................................CGGAAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................28110.091100000
...................................................................AAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTGCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................27120.081010000
.................................................................GGAAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................28130.081010000
.................................................................GGAAATG-------G--------------CACAAAC---------------------CTT----------------------------AACTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081010000
........................................................TGAACGATCGGAAATG-------G--------------CACAAAC---------------------CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.061010000
..........................................AGACGCCATATAACTGAACGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.061100000
......................................................ACTGAACGATCGGAAATG-------G--------------CACAAAC---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.051010000
.....................................................AACTGAACGATCGGAAATG-------G--------------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
................................................CATATAACTGAACGATCGGAAATG-------G--------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
........................................................................................................................................................................ATCAACTTCGGCTCCGCCCGA....................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..................................................TATAACTGAACGATCGGAAATG-------G--------------CACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
..............................................................................................................................................................CAAGGGTAT-ATCAACTTCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
TCT--------CATAAGGATTGGCCAACTATATCCG----ATGTTTGCGATATATATCCTGT------------------------------------------------------------TTT----------------------------AACTGCAATGGTAT-ATCAACTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTCTTGTTTTTAGATTTTTTATTTTAAATTATTGGTTTTATTATGATGTAATCATAAGGATGTTTGGATATATATCCGGTTTTAGCTGCA-AGAG--------------------------------------------------------------------------------------------------TA------------------------T----------------------------------------------------------------------------------------------AT-------AAACTTCGGC---------------------------------------TCTSizeHit CountTotal NormTotal
No Reads
droKik1
AA------TTTCATGAAAATCGGACAACTATATGTT----ATAGCTGCCATAGGAACGATCGG----GAAA-----TTAATAGGAG---AAAAA------------TT------------------------------------------------------------A-TAACTTCG------------------------------TTTTTTTT-----------------------------------------------------------------------AACGTAC-------T-TTC-----AT------------------------------------------------------------------------------CTACTCT----------------------GAGATATAAGCTCATTTTATT--------------------ATTCTAGAATTTTGGTAT-----------------AAA-TTTAA--TAAAAATCGGA-------AAAC------------TATATCATATAGCTAC---CATAGAAACGA---CCASizeHit CountTotal NormTotal
No Reads
droFic1
GAATTAAATTTGATCAAAATCGAACAACTATATCAT----ATAGCTCCCATATGATCTATAG-TCGGAAATATGGATTTG--------------TTCGACATATTT----------------GAT----------------------------GACTGCAAGGGTAT-ATAAGCTTCGGCTT--GCCGAAGCTAGCTT-CCTTTCTTGTTTTTT-A-----------------------------------------------------------------------TTATTTA-----------------------------------------------------------------------------------------------------------GTTCAAGAATTCAGCTTTCAAAAAGTAATTTAATTTTTTA--------------------ATTTAATTTTTTATTTAT-----------------T------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droEle1
TA--------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCAAGGGTAT-ATGAACTTCGGCTT--GCCGAAGTTTGCTT-TCTTTCTTGTTTTTTTT-----------------------------------------------------------------------TTGTT---------------------------------------------------------------AAAAA-------------------AA----------GTTTTTTTTTGAGC----------------------------ATTCTTTTA-------------TCTTTAGT---------------TGAGTTTTTTTCGTGTATTCTCAGTCCAAAAGATTTTAAG-------TTTTTTGGGAT----------------------CA---CAGATAGA-----ASizeHit CountTotal NormTotal
No Reads
droRho1
ACC--AAATTTCATAAGCTTCGGCCGACTATATCCT----ATAGCTGTCATATAACTGAACGATCAGAAATG-------A--------------CATAGC------TTACAAAAT---------A----------------------------TTCTGCAAGGGTAT-ATCAACTTCGGCTCCGCTCGAAGTTAGCTTTCCTTTCTTGTTATTT-A-----------------------------------------------------------TATA--------TGTC--G---------------------------------------------------------------------------------------ACACT----------ACAACTTAT----------------------------AGTATTTTGGCGACTTCTACAGTTTTGACT---------------TGAA------------------TTCGATTATTAGATTTAGTTTAAGGCATTCC----ATTCAG------------AAGAGCA---CC-GGCAA---ACTSizeHit CountTotal NormTotal
No Reads
droBia1
TG---------------GATCAGAAAACTATATTAC----ATAGATCCCATACAAATAATTAACAAAATATA-------A--------------AAAAA-------------------------------------------------------ACTGTAAAAAAAC-ATAAG-TTCGGT-------G----------------------TTTTTT-----------------------------------------------------------------------GACATAT-------T-AACTA---CTCTACTCTTGGGCAGATTAAATATTTTAGACTTTTTCTTAAATAA------------------------AAAAAGTTATGTTTCGT----------------------TTTTAGTAAACTTATACGGTA----------------GTGAAT---------------TAAT------------------ATTAAACAATATCTTAAAATGTTGGTAACCTCTCTG----------------------CA------AGAAT---GTASizeHit CountTotal NormTotal
No Reads
droTak1
AA------TTTGATCAAAATCGGACGACTATATCAT----ATAGCTGCCATAGGAACGATCGG----AAAA-----TTAATG--AG---AAATA------------TTAGAAA--ATTAACA--TTTTTGCGATTTGTTAATTAATAGGAATGATCTGCAAGGGTAT-ATAAGCTTCGGCT--GGCCGAAGCTAGCTT-CCTTTCTTGTTTTTGTT-----------------------------------------------------------------------TC----------------A-----AA------------------------------------------------------------------------------GTGTCT---TGCTC----------------------------AG-ACACTG--------------------A-----------------GCATTTCCGTGTGTTCTATTTAGGAACCTGTTTTCCTG----AG-ACACTTTGCCT----------------------TT---CAGAA---------SizeHit CountTotal NormTotal
No Reads
droEug1
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------GATTAATTGCAGGTTTCATCAATTAACCGAGTTTTGCG-------TAACCTGGCCT----------------------CA---CAGAAGGA---GCASizeHit CountTotal NormTotal
No Reads
dm3
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCATCTATTAATCGAGTCTTACG-------TAACCTGGCCT----------------------CA---CAAAAGGA---GCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCATC.............................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGCCT----------------------CA---CAAAAGGA---G..2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATCGAGTCTTACG-------TAACCTGG............................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGTCTTACG-------TAACCTGG............................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTATTAATCGAGTCTTA.............................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG-------TAACCTGGCCT----------------------CA---CAAAAGGA---GC.2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCATCTATTAATCGAGT.................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATCGAGTCTTACG-------TAACCTGGCC..........................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTC................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTTACG-------TAACCTGGCCT----------------------C..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG-------TAACCTGGCCT----------------------CA---CAAA..........2112.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTT.................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATTAATCGAGTCTTACG-------....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCA...............................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------G-----------------GATTATTTGCAGGTTTCATCTATT.........................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTATTAATCGAGTCT...............................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTATTAATCGAGTCT...............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGAGTCTTACG-------TAACCTGGCC..........................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCTATTAATCGAGTCTTACG-------TA..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTT..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACG-------TAACCTGGCCT----------------------CA---CA............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAGTCTTACG-------TAACCTG.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGAGTCTTACG-------TAACCTGGC...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCTTACG-------TAACCTGGCCT----------------------...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTATTAATCGAGTCTTACG-------....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------G-----------------GATTATTTGCAGGTTTC................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCTATTAATCGAGTCTT..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTATTAATCGAGT.................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCTTACG-------TAACCTGGCC..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGTTTCATCTATTAA.......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGTCTTACG-------TAACCTGGCCT----------------------C..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCATCTATTAATCGAGTCTTACG-------....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGAGTCTTACG-------TAACCT..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGGTTTCATCTATTAATCGAG..................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTATTAATCGAGTCTTACG-------T...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTACG-------TAACCTGGCCT----------------------C..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACG-------TAACCTGGCCT----------------------CA---CAAAAGGA---G..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGAGTCTTACG-------TAACCTGGCC..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTCTTACG-------TAACCTGGCCA----------------------...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGAGTCTTACG-------TAACCTGGT...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAGTCTTACG-------TAACCTGGCCT----------------------C..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTAATCGAGTCTTACG-------TAACC...............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTATTAATCGAGTCTT..............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTAATCGAGTCTTACG-------....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCGAGTCTTACG-------TAACC...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGAGTCTTACG-------TAACCTGGCCT----------------------C..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATCGAGTCTTACG-------TAA.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCAT..............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTAATCGAGTCTTACG-------TAA.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTAATCGAGTCTTACG-------TAACCTGG............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTAATCGAGTCTTACG-------TA..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCATCTATTAATCGAGTCTTACG-------AAACCTGGCTT----------------------CA---CAAAAGGA---GCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTATTTGCAGGTTTCAT..............................................................................2511.00100000000001000000
droSec2
TTTT----------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------C-----------------------------------------------------------------------CAATT----------------------------------------------------------------GGAAATGTACATATTGTGTTCATGTATTTT----------ATTGTACGC----------------------------AGTATACTG--------------------G-----------------GATTATTTGCAGGTTTCATCTATTAATCGAGTCTTACG-------AAACCTGGCTT----------------------CA---CAAAAGGA---GCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACACGTTGTTTTC-----------------------------------------------------------------------CAATT---------------------------------------------------------------AAGAAATGTACATATTGTGTTCATGAATTTT----------ATTGTACGC----------------------------AGTATTCTG--------------------G-----------------GATTAATTGCAGGTTTCATCTATTAACCGAGTCTTACG-------TAACCTAGCTT----------------------CA---CAAAAGGA---GCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------G-----------------GATTAATTGCAGGTTTCATCTATTAACCGAGTCTTACG-------TAACCTAGCTT----------------------CA---CAAAAGGA---GCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCAGGTTTCATCTATAAATCGAGTCTTGCG-------CAATTTGGCAT----------------------CG---CAAAAGGA---GCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCTTGCG-------CAATTTGGC...........................................2011.0010100000000
droPer2
AAAA----------------------------------------------------------------------------------------------------------------------TTT----------------------------ATCTGCAAGGGTGTCATAGACTTCGGC---GCCCGAAGTTAGATTTTCTTTATAGTTTTTTTA-----------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GCC--AAATTTGATCAAGATGGGGTGACTATATAAT----ATAGGTCCCATAGGAACGATCGGTCAAAAACA-------G------------------------------------------------------------------------------------------TGACTTCGACGGCGTTAAAATTTGAATTCCCTTGCAAATTTTTTTGTT----ACTTT------------------------------------------------TTTCTTACCTAGCAGTC-AAAGTAGAA-ATA-----AC------------------------------------------------------------------------------ATTTTA------------------------TAC--------------------------------------------------------------------------------------------------AA-AGAC--T---------------------------------------TATGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................GGTCCCATAGGAACGATCGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100100
.........TTGATCAAGATGGGGTGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100100
..................................................TAGGAACGATCGGTCAAAAACA-------G------------------------------------------------------------------------------------------TGACT..................................................................................................................................................................................................................................................................................................................................................................................................................28140.07101000
........................................ATAGGTCCCATAGGAACGATCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05100100
........................................ATAGGTCCCATAGGAACGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
..........................................AGGTCCCATAGGAACGATCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
droVir3
GG----------------ATCGGACAACTATATAAT----ATTGCTGCTATAGAGACGATCGGTCGAAAA---------GTAGGTTCCTGTA--------------TAACAAAATATTATTT--T----------------------------TTCCACGAAATTTCCATT----------------AAATTCAGCATTTAT-TTTTATATTTTTA-----------------------------------------------------------------------TAATT-GAAATAAAAATAT--GAAAT------------------------------------------------------------------------------ATTTTA------------------------TGG--------------------------------------------------------------------------------------------------AA-ACGC------------TTTATTATATTGTAATT--TATTGGAGCT-TACACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................TGCTATAGAGACGATCGGTCGAAAA---------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.005000001000000000000003000000000000000000000000000000000000000010
...................................T----ATTGCTGCTATAGAGACGATCGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000001000000000000000000000000000000000000000000
...........................................................TCGGTCGAAAA---------GTAGGTTCCTGTA--------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000010000000000000000000000000000000
..............................................GCTATAGAGACGATCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000100000000000000000000000000000000000000000000000000000
...........................................................TCGGTCGAAAA---------GTAGGTTCCTGTA--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000000000000000000001000000000000000000000000000000000000000000
droMoj3
TTTT----------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------TTTTTTTTCTTTTTG-----------------------------------------------------------------------TATTTTA-------T-CTC-----AT------------------------------------------------------------------------------GTTTTTT----------------------GTTGTGTAACTTTAGGTTGTT--------------------GTTCTTGTTATTAGTTAT-----------------T------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AT------------------CGGACTACCATATCCCATATATAGCTACAATAGGAATAATCGG----AAGGT-------G--------------CTTGACT---------------------CCT----------------------------TTCCGCAAGAGTAT-TTTAACTG-----------AAAGTCATTCTCTTCTGTTTATTTGGTTA-----------------------------------------------------------------------TGTAA-GAAATAAATATGC-----GC------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:43 AM