ID:

dan_1159

 Coordinate:

scaffold_13047:1683163-1683270 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.2 -6.8 -6.8

Flybase annnotation

exon [dana_GLEANR_20770:4]; exon [dana_GLEANR_20770:5]; CDS [Dana\GF19051-cds]; CDS [Dana\GF19051-cds]; intron [Dana\GF19051-in]

Repeatable elements

NameClassFamilyStrand
(TCG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------##################################################
ACGGGCTGCGCAGCCTGGCCATGGAGATGTTCCAGCGCAGTCTCCTGGATGTCAAATGAGATCGTGAAGCGGCGGAGGAGAGAGCACCGGAGTCCGGCGAGGGCGACGACGACGATGACGACGACGATGACGATGACGACGATGATGATGACAATGAGGATGATGATGAGGAGGAGCCAGATCATTTGGACCATGCGGGCGCAGTGGA
*******************************************************************************************((.((.((....((....((.((.......)).))....))....)).))...))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V055
head
................................................ATGTCAAATGAGATCGTGAAGCGG........................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0
.................GCCATGGAGATGTTCCAGCGC.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0
........................................................................................................................................................................ATGAGGAGCCAGATCATTTGGACCATGC............ 28 1 1 1.00 1 1 0 0 0 0
..................................................GGCAAATGAGATCGTGAAGCGGCGGA.................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................GACGATGACGATGACGACGATGAT.............................................................. 24 0 1 1.00 1 0 0 1 0 0
...........................................................................................GTCCGGCGAGGGCGACGACGAC............................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.................................................................................................................GATGACGACTACGATGACGAAGACGACG................................................................... 28 2 1 1.00 1 0 1 0 0 0
.............................................................................................................................................ATGATGATGACAGAGAGGA................................................ 19 2 10 0.60 6 0 1 1 3 1
...........................................................................................................................ACGATGACGATGACGACGAT................................................................. 20 0 2 0.50 1 0 1 0 0 0
...................................................................................................AGAGCGACGACGACGATGACGA....................................................................................... 22 1 2 0.50 1 1 0 0 0 0
ACGCGCTGCGTAGCCTGG.............................................................................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0
..........................................................................................................................GACGATGACGATGACGACGAT................................................................. 21 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................TTGACCATGCGGGCGCAGC... 19 2 3 0.33 1 1 0 0 0 0
......................................................................................................GCGACGACGACGATGACGAAGAC................................................................................... 23 1 3 0.33 1 1 0 0 0 0
.............................................................................................................................GATGACGATGACGACGATG................................................................ 19 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................GACGACGATGACGATGACGACGA.................................................................. 23 0 4 0.25 1 0 0 1 0 0
............................................................................................................................CGATGACGTTGACGACGATGG............................................................... 21 2 5 0.20 1 0 1 0 0 0
............................................................................................................................................................ACGATGATGATGAGGAGCAGC............................... 21 2 5 0.20 1 1 0 0 0 0
.................................................................................................................................ACGAGGACGATGATGAAGATGACAAT..................................................... 26 3 5 0.20 1 0 1 0 0 0
.................................................................................................................GATGACGACGACGATGACGA........................................................................... 20 0 5 0.20 1 0 0 1 0 0
................................................................................................................................GACGATGACGACGATGATGAGGA......................................................... 23 1 6 0.17 1 0 0 0 0 1
................................................................................................................................GATGATGAGGACGATGATGATGACA....................................................... 25 2 6 0.17 1 0 0 0 0 1
.............................................................................................................................GATGACGATGACGACGAT................................................................. 18 0 6 0.17 1 0 1 0 0 0
..........................................................................................................CGACGACGATGACGACGAC................................................................................... 19 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................GATGACGACGATGATGATGA......................................................... 20 0 7 0.14 1 0 0 0 1 0
........CGCAGCATGACCGTGGAGATG................................................................................................................................................................................... 21 3 7 0.14 1 0 0 1 0 0
..........................................................................................................CGACTACGCTGACGAAGACGAT................................................................................ 22 3 8 0.13 1 0 1 0 0 0
.................................................................................................................GATGACGACGACGATGAC............................................................................. 18 0 9 0.11 1 1 0 0 0 0
..........................................................................................................................GACGATGACGATGACGAC.................................................................... 18 0 18 0.11 2 1 0 0 1 0
........................................................................................................................................................................................TTTGGACCAGGGGGTCGCAG.... 20 3 9 0.11 1 0 1 0 0 0
...........................................................................................................GACTACGATGACGAAGACGAT................................................................................ 21 2 11 0.09 1 0 0 1 0 0
........................................................................................................GACGACGACGATGACGACGA.................................................................................... 20 0 11 0.09 1 1 0 0 0 0
....................................................TAAATGAGTTCGTGAAACGG........................................................................................................................................ 20 3 14 0.07 1 0 1 0 0 0
........................................................................................................GACGACGACGATGACGTCGA.................................................................................... 20 1 15 0.07 1 0 0 0 1 0
.............................................................................................................CGACGATGACGACGACGA................................................................................. 18 0 16 0.06 1 1 0 0 0 0
...................................................................................................AGGGCGACGACGACGACGAC......................................................................................... 20 1 17 0.06 1 1 0 0 0 0
.........................................................................................................CCGACGACGATGACGACGAC................................................................................... 20 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................TTTGGACCAGGGGGTCGCA..... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGCCCGACGCGTCGGACCGGTACCTCTACAAGGTCGCGTCAGAGGACCTACAGTTTACTCTAGCACTTCGCCGCCTCCTCTCTCGTGGCCTCAGGCCGCTCCCGCTGCTGCTGCTACTGCTGCTGCTACTGCTACTGCTGCTACTACTACTGTTACTCCTACTACTACTCCTCCTCGGTCTAGTAAACCTGGTACGCCCGCGTCACCT
**************************************************************((.((.((....((....((.((.......)).))....))....)).))...))******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
..........GTCGGACCGGTACCTCTGCAA................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0
......................................................................................................................................................................TCTCCTTCTTGGTCTAGTAAA..................... 21 3 5 0.20 1 0 1 0
.......................................................................................................................................CGCTGCTACTAGTACCGTTAC.................................................... 21 3 16 0.06 1 0 0 1
....................................................................................................................CTCCTGCTGCTACTGCTACT........................................................................ 20 1 20 0.05 1 1 0 0
.....................................................................................................................TCCTGCTGCTACTGCTACT........................................................................ 19 1 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13047:1683113-1683320 - dan_1159 ACGG----G----CTGCGCAGCCTGGCC--ATGGAG------------------A----TG---TTCCAGCGCAGTCTCCTGGATG----------TCAAATGAGATCGTGAAGCGGCGGAGGAGAGAGCACCGGAGTCC-----------------------------------------------------------GGCG---------------A---------------GGGCG------------------ACGACG--AC---------GATGACGACG------------ACGATGA---------CGATGACGACGATGAT---------------------GAT---------GACAAT---------------G------AGGATG------------ATGATG------AGGAGGAGCCAGATCATTTGGACCAT---------------GC----------------------------------------GGGCGCAGTGGA--
droBip1 scf7180000396740:509526-509715 - ACGG----G----CTGCGCAGCCTGGCC--ATGGAG------------------A----TG---TTCCAGCGCAGTCTCCTGGACG----------TCAAATGAGATCCCGAAGGGGCG-AGCCGAGTGCCGG----------------------------------GTGAGAGAGTTGCCG---AG------------G---------------ACGATGAGATCGACG-----------------------------------------------------ATGAG---GACGACGACGACAACGATGATGACAAACCAGAACAT------------------------T---------------------------------------------------------------------TGGA---T---------------CACGACGA------C---GA-----GGTAGAGTC-----------------------------------GGA--
droKik1 scf7180000302412:640721-640912 - AGGA----G----TCGAACAGTGAGGCC--GCCAAG------------------G----CCGATGAAGTCGACTCCGA----------------TGAAGAG---GATGCCGAGGAGGCGGCGG---GTGAGGACGAAAGCGG-----------TGAGGATGGAGATG---------ATACAGATG---ACGACGATATAGATG---------------G---------------A---------------------------GAA-----------GATGATGATGAT---GACGACGAAGAGGA------------------AGAC------------------------GAT---------GACGAA---------------G------------------------------------AGGA---A---------------GATGACGA------T---GA-------------------------------------------------GGACG
droFic1 scf7180000454117:162060-162225 - AGGA----T----TCGAGCAGCGAGGGC--GCCAAG------------------G----CC---GAGGCAGAATCCGA----------------TGAGGAGGAGGATGTGGAGGAGGCGGAGGACAGTGCCGAGGAGAGCGG-----------CGGGGATGGCGA---------------------------------------------------------------AGATT---------------CGGATGATGAT--------------------------------GATGATGAGGACGT---------------------TGAC---------------------GAA---------GAAAAT---------------G------------------------------------AGGA---T---------------GATGACGA------C---GA-------------------------------------------------CGA--
droEle1 scf7180000491023:385328-385498 + GGCT----A----TG---CA-CGTGGCC--ATGA---CCG--------------A----TT---CTTCCGCTTGATCGCTGGCCAG----------AGGAGCGGGATCTC-----------------------------------------------------------------------------------------GACG------------ACGACGACGACGACGA---AGAC------------GACGACGACGAAGAA-----------GACGACGACGAC---GACGACGACGAGGA------------------TGAT------------------------GAC---------GACGAC---------------G------------------------------------AGGA---T---------------GATGATGA------T---GA-----TAAAGATTT-----------------------------------GGAGG
droRho1 scf7180000779312:362553-362707 + GCAG----A----TTCC-----------------------------------------------------------GA----------------TGAAGAGGAAGATGTCGAGGAGGCGGAGGACAGTGCCGGCGAAAGCGG-----------CGAGGATGGCGACG---------ACACTG---------------ATGATG---------------A------------------G--------------------------------------GACAT---------------------------------------------TGATGAAGAAAATGAAGA------TGATGATGACG---------AGG------------ACGACGATGAGG------------------------AAGA---T---------------GACGACGA------A---GA-------------------------------------------------GGA--
droBia1 scf7180000299226:552662-552862 + CCCTG--GG----CTGCGGCGTCTGTCGCAATGC---CCAAA------------C----AT---TTTAGCCACACT--CTTGGACG--------CGAGCC---------------GGTGGCGA--------------------------------------------GTGGAAGGCCC----------ACCAGGAATCGGATG---------------A---------------AGAG--------------------------------------GATGACGACGAC---GACGACGACGACGACGACGA---------------T------------------------GACG------------------------------------------------------------------TGGA---C---------------GACGACGA------C---GG-----CGAAGAGCTGGCGCCGGACATGTGGGCCAGCGTCTGGTCGCAGTCGG--
droTak1 scf7180000415991:326414-326588 + ATGA----A----CGGAATGGCTACTCC--CTGGAG------------------C----CC---GCAATCGATGTGGT----------------TGGCGAAGCGGAGGTGGAAACCGCCGAGGATACAGC-----------------------CACTGCC------------------------A---CTGAAGAACAAGATG---------------A---------------AGAG--------------------------------------GACGAGGACGAG---GACGAGGACGAGGA------------------CGAT------------------------GACGATG---------------------------ACGATGAAGGTG------------------------AAGG---T---------------GAAGATGA------A---CA-------------------------------------------------GGA--
droEug1 scf7180000409533:797240-797415 + AGGA----G----CGTCCTCGCCAGTTT--ATTGAG------------------G----TC---TTTGATCACATTTA----------------TGAGCCGGAATCTTCTGAGACGGCGTCGAA--------------------------------------------------------------CGATGCAGATGTGGACA------------ACGACGATGATGATGACG---------------AAGATGAGGACGATGTG--------------------------------GAC---------------------------------------------------GACGACG---------------------------ATGATGACGACG---AA---GACAA---TGACGACGAGGA---T---------------CG------------C---GA-------------------------------------------------GGA-G
dm3 chr2R:2617971-2618116 - AGAT----G----AGGACGAAAATGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A---ACGAAGATAATAAGG--------------------------------------------------------------GAGATGACGAGGATGATGAGGACGGGGACGAGGAGGACGA------------------TGAC------------------------GATGATGACG---------GGGACGACGATAACA------AAAAAG------------ACCATG------AGGA---C---------------GAGGATGATAACGACGACGG-------------------------------------------------GGACG
droSim2 2r:3483109-3483237 - GGAT----G----A-----------------------------------------------------------------------------------CGAAGAAGATAAT--------------------------------------------------------------------------AAT------------GATGACGACGAAGAAGACAATAATAACGACGACGAAGAAG------------------ACAATAAT-----------AATGACGACG------------AGGATGA---------CGAAGAAGATAAT------------------------GAT---------GATGAT---------------G------------------------------------ACGA---G---------------GATGACGA------A---GA-------------------------------------------------AGA--
droSec2 scaffold_3:5157007-5157141 - GAAA----C----GGCAGAGTACAAGAA--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTCA------------ACGA---------------AGACGAGGAGGATCCGGAGGATGAT--------------------------------GATGATAATGAAGA------------------CGAC------------------------GAT---------GAAGAG---------------G------------------------------------AGGA---A---------------GAGCTCGA------C---GAGAAGACCAAGC-----------------------------GTC------TGCAG
droYak3 2R:16839597-16839759 + CGCA----GTTGGCA--ACGGAAATATC--GCCAGG------------------G----GA---TTCATCGCCAGCCA----------------GGCGGAGGAG------------------------------------------------------------------------CCATGG---AG------------GATA---------------AGGACGTGGAGG-----------------------------------------------------ACAAC---GACGACGACGACGATGATGACGATGA---------GGAT------------GACGAGGATGAGTT------------------------------------C---G---GT---GCTGC---CGTTT---GCGA---G---------------GATAACCC------G---GA-------------------------------------------------GGAGG
droEre2 scaffold_4690:11420370-11420535 - AAGA----G----CGACCGCGCCAGTTC--ATCGAG------------------G----TC---TTCGATCACATCTA----------------TGAGCCGGAATCCTCTGAAACGGCGTCCAA--------------------------------------------------------------CGATGCAGATGTGGATA------------ACGATGATGATGATGACG---------------AGGATGAGGACGATGTG--------------------------------GAT---------------------------------------------------GACGACG---------------------------ACGATGACGACG------------------------AAGA---C---------------AACGACGA------T---GA-------------------------------------------------GGA--
dp5 XL_group1a:7956474-7956637 - AGGA----G----CGGCCCCGCCAGTTC--ATCGAG------------------G----TA---TTCGACCACATCTA----------------CGAGCCGGAGTCCTCGGAGACGGCCTCCAA--------------------------------------------------------------CGATGCCGATGTCGATG------------------CCGACGACGACG--------------------------------------------ACGACGAC------------GAGGACGTCGATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GACGC---CGATGACGAGGA---C---------------CAT-----------------------------------------------------------------------
droPer2 scaffold_29:896089-896257 + ACAG----T----CTGCGTCCCTTGCCG-----------------------------------------CCGTTGCCGTCTAGACCTTTAAGGTCGTTGCAG--G-----------------------------------------------------------------------------------------AGTCGGATA------------GCGATGAGGACTACGACC--------------------------------TAGATGAGGAAGACGATGACGATGATGATGACGAAGAGGA------------------CGAC------------------------GAT---------GTTGACGAGGAGTACGAGAC------------CA------------------------TTAA---T---------------GAGCTCGA------T---GT-------------------------------------------------GGA--
droWil2 scf2_1100000004909:5726357-5726496 + GATG----A----TAGCTCAGA-----------------------------------------------TGATGACGA----------------TGG---------------------AGAGGATACT--------------------------------------------------------TCT------------GATG------------ACGATGATGATGATGATG--------------------------------AT------------------------GAC---GACGACGACGATGA---------------T------------------------GATGATGATG---ATG------------------ATGA------CGACGACGATGATGACGACG------AAGAGGAG---------------GACGATGA------T---GT-------------------------------------------------GGA--
droVir3 scaffold_13042:974960-975155 - CCGCCGCGG----CCGC-CATGCTGGGC--ATGATG---ACGCCCCTTAGCCAGG----TG---GCCGAGACCAT----------G----------C--CAC--G------AG------GCGAA---CGTGAA---------GCCGACGCAGATCACCCG------------------------ACC------------GAGG---------AGGGCGAGGACGAGGAGGAGGAGGAGG---------------AGGAAGACGTA--------------GATGACAAC---GACGACGACGACGA------------------TGAT------------------------GAC---------GATGAT---------------G------------------------------------AGGA---T---------------GAGAATGA------G---GA-------------------------------------------------GGA--
droMoj3 scaffold_6680:20817405-20817561 + GTGG----G----CGCTGTGGGCGTGTC--AGCGGGGCCG--------------A----TC---GCAG-CGCCTGCTGCTGGTATT------------------------------------------------------AG-----------TGGCGCCG---------------------------GTGCAGCGTCTGATG------------ACGAAGACGACGACGACG--------------------------------AC------------------------GAC---GAGGACGATGAATA---------------T------------------------GATGATGATG---ATG------------------ATGG------TG------------------------GTGA---T---------------GATATTGA------T---GA-------------------------------------------------TGGAG
droGri2 scaffold_15112:147018-147185 + ACAGC--AG----CTGCTCAGGC-----------------------------------------------AACAGCAA----------------CGG-ATG---GATGCCGAGGAGCAGCTGA---GTGGCAGCGATTGTGC-----------GCAGAGCGATG------------------------ATGAGGCACAGGATG---------------A---------------GGAC------------------GACGACGAC--------GACGACGAC---------------GATGATGATGACGA---------------T------------------------GAAGATGATGATGAAGAT---------------G------------------------------------GGGA---G---------------GAGGACGA------T---GA-------------------------------------------------TGA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACGG----G----CTGCGCAGCCTGGCC--ATGGAG------------------A----TG---TTCCAGCGCAGTCTCCTGGATG----------TCAAATGAGATCGTGAAGCGGCGGAGGAGAGAGCACCGGAGTCC-----------------------------------------------------------GGCG---------------A---------------GGGCG------------------ACGACG--AC---------GATGACGACG------------ACGATGA---------CGATGACGACGATGAT---------------------GAT---------GACAAT---------------G------AGGATG------------ATGATG------AGGAGGAGCCAGATCATTTGGACCAT---------------GC----------------------------------------GGGCGCAGTGGA--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................ATG----------TCAAATGAGATCGTGAAGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.........................GCC--ATGGAG------------------A----TG---TTCCAGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.............................................................................................................................................................................................................................................................................................G------------ACGATGA---------CGATGACGACGATGAT---------------------.......................................................................................................................................................................2411.001000010
........................................................................................................................................GTCC-----------------------------------------------------------GGCG---------------A---------------GGGCG------------------ACGACG--AC---------..................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................ACGATGA---------CGATGACGACGAT...............................................................................................................................................................................................2020.501100000
.............................................................................................................................................................................................................................................................................................G------------ACGATGA---------CGATGACGACGAT...............................................................................................................................................................................................2120.501010000
............................................................................................................................................................................................................................................................................................................GATGA---------CGATGACGACGATG..............................................................................................................................................................................................1930.331010000
..........................................................................................................................................................................................................................................................................................GACG------------ACGATGA---------CGATGACGACGA................................................................................................................................................................................................2340.251000010
....................................................................................................................................................................................................................................................................................GATGACGACG------------ACGATGA---------CGA.........................................................................................................................................................................................................2050.201000010
............................................................................................................................................................................................................................................................................................................GATGA---------CGATGACGACGAT...............................................................................................................................................................................................1860.171100000
..................................................................................................................................................................................................................................................................CGACG--AC---------GATGACGACG------------AC..........................................................................................................................................................................................................................1960.171010000
...........................................................................................................................................................................................................................................................................................................................GATGACGACGATGAT---------------------GAT---------GA.........................................................................................................................................................2070.141001000
....................................................................................................................................................................................................................................................................................GATGACGACG------------ACGATGA---------C...........................................................................................................................................................................................................1890.111010000
.............................................................................................................................................................................................................................................................................................G------------ACGATGA---------CGATGACGAC..................................................................................................................................................................................................18180.112011000
..............................................................................................................................................................................................................................................G------------------ACGACG--AC---------GATGACGACG------------A...........................................................................................................................................................................................................................20110.091010000
.....................................................................................................................................................................................................................................................................CG--AC---------GATGACGACG------------ACGA........................................................................................................................................................................................................................18160.061010000
droBip1
ACGG----G----CTGCGCAGCCTGGCC--ATGGAG------------------A----TG---TTCCAGCGCAGTCTCCTGGACG----------TCAAATGAGATCCCGAAGGGGCG-AGCCGAGTGCCGG----------------------------------GTGAGAGAGTTGCCG---AG------------G---------------ACGATGAGATCGACG-----------------------------------------------------ATGAG---GACGACGACGACAACGATGATGACAAACCAGAACAT------------------------T---------------------------------------------------------------------TGGA---T---------------CACGACGA------C---GA-----GGTAGAGTC-----------------------------------GGA--SizeHit CountTotal NormTotal
No Reads
droKik1
AGGA----G----TCGAACAGTGAGGCC--GCCAAG------------------G----CCGATGAAGTCGACTCCGA----------------TGAAGAG---GATGCCGAGGAGGCGGCGG---GTGAGGACGAAAGCGG-----------TGAGGATGGAGATG---------ATACAGATG---ACGACGATATAGATG---------------G---------------A---------------------------GAA-----------GATGATGATGAT---GACGACGAAGAGGA------------------AGAC------------------------GAT---------GACGAA---------------G------------------------------------AGGA---A---------------GATGACGA------T---GA-------------------------------------------------GGACGSizeHit CountTotal NormTotal
No Reads
droFic1
AGGA----T----TCGAGCAGCGAGGGC--GCCAAG------------------G----CC---GAGGCAGAATCCGA----------------TGAGGAGGAGGATGTGGAGGAGGCGGAGGACAGTGCCGAGGAGAGCGG-----------CGGGGATGGCGA---------------------------------------------------------------AGATT---------------CGGATGATGAT--------------------------------GATGATGAGGACGT---------------------TGAC---------------------GAA---------GAAAAT---------------G------------------------------------AGGA---T---------------GATGACGA------C---GA-------------------------------------------------CGA--SizeHit CountTotal NormTotal
No Reads
droEle1
GGCT----A----TG---CA-CGTGGCC--ATGA---CCG--------------A----TT---CTTCCGCTTGATCGCTGGCCAG----------AGGAGCGGGATCTC-----------------------------------------------------------------------------------------GACG------------ACGACGACGACGACGA---AGAC------------GACGACGACGAAGAA-----------GACGACGACGAC---GACGACGACGAGGA------------------TGAT------------------------GAC---------GACGAC---------------G------------------------------------AGGA---T---------------GATGATGA------T---GA-----TAAAGATTT-----------------------------------GGAGGSizeHit CountTotal NormTotal
No Reads
droRho1
GCAG----A----TTCC-----------------------------------------------------------GA----------------TGAAGAGGAAGATGTCGAGGAGGCGGAGGACAGTGCCGGCGAAAGCGG-----------CGAGGATGGCGACG---------ACACTG---------------ATGATG---------------A------------------G--------------------------------------GACAT---------------------------------------------TGATGAAGAAAATGAAGA------TGATGATGACG---------AGG------------ACGACGATGAGG------------------------AAGA---T---------------GACGACGA------A---GA-------------------------------------------------GGA--SizeHit CountTotal NormTotal
No Reads
droBia1
CCCTG--GG----CTGCGGCGTCTGTCGCAATGC---CCAAA------------C----AT---TTTAGCCACACT--CTTGGACG--------CGAGCC---------------GGTGGCGA--------------------------------------------GTGGAAGGCCC----------ACCAGGAATCGGATG---------------A---------------AGAG--------------------------------------GATGACGACGAC---GACGACGACGACGACGACGA---------------T------------------------GACG------------------------------------------------------------------TGGA---C---------------GACGACGA------C---GG-----CGAAGAGCTGGCGCCGGACATGTGGGCCAGCGTCTGGTCGCAGTCGG--SizeHit CountTotal NormTotal
No Reads
droTak1
ATGA----A----CGGAATGGCTACTCC--CTGGAG------------------C----CC---GCAATCGATGTGGT----------------TGGCGAAGCGGAGGTGGAAACCGCCGAGGATACAGC-----------------------CACTGCC------------------------A---CTGAAGAACAAGATG---------------A---------------AGAG--------------------------------------GACGAGGACGAG---GACGAGGACGAGGA------------------CGAT------------------------GACGATG---------------------------ACGATGAAGGTG------------------------AAGG---T---------------GAAGATGA------A---CA-------------------------------------------------GGA--SizeHit CountTotal NormTotal
No Reads
droEug1
AGGA----G----CGTCCTCGCCAGTTT--ATTGAG------------------G----TC---TTTGATCACATTTA----------------TGAGCCGGAATCTTCTGAGACGGCGTCGAA--------------------------------------------------------------CGATGCAGATGTGGACA------------ACGACGATGATGATGACG---------------AAGATGAGGACGATGTG--------------------------------GAC---------------------------------------------------GACGACG---------------------------ATGATGACGACG---AA---GACAA---TGACGACGAGGA---T---------------CG------------C---GA-------------------------------------------------GGA-GSizeHit CountTotal NormTotal
No Reads
dm3
AGAT----G----AGGACGAAAATGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A---ACGAAGATAATAAGG--------------------------------------------------------------GAGATGACGAGGATGATGAGGACGGGGACGAGGAGGACGA------------------TGAC------------------------GATGATGACG---------GGGACGACGATAACA------AAAAAG------------ACCATG------AGGA---C---------------GAGGATGATAACGACGACGG-------------------------------------------------GGACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAACGACGACGG-------------------------------------------------GGACG2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A---ACGAAGATAATAAGG--------------------------------------------------------------GAGATG.......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............GGACGAAAATGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A---ACGA......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGGACGAAAATGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------A---ACGA......................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................C------------------------GATGATGACG---------GGGACAT.............................................................................................................................................18120.7590000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000110000000000000000000000000000010200000
....................................................................................................................................................................................................................................................................................................................................GAC------------------------GATGATGACG---------GGGACAG.............................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGGACGA------------------TGAC------------------------GATGATG................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATG------AGGA---C---------------GAGGATGATC................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TG------AGGA---C---------------GAGGATGATC................................................................1770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GATGACGAGGATGATGAGGAT......................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GAC------------------------GATGATGACG---------GGGACATT............................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
droSim2
GGAT----G----A-----------------------------------------------------------------------------------CGAAGAAGATAAT--------------------------------------------------------------------------AAT------------GATGACGACGAAGAAGACAATAATAACGACGACGAAGAAG------------------ACAATAAT-----------AATGACGACG------------AGGATGA---------CGAAGAAGATAAT------------------------GAT---------GATGAT---------------G------------------------------------ACGA---G---------------GATGACGA------A---GA-------------------------------------------------AGA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................ATGAT---------------G------------------------------------ACGA---G---------------GATGACGA------A---G.......................................................2111.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................AT---------GATGAT---------------G------------------------------------ACGA---G---------------GATGACGA------A---GA-------------------------------------------------AGA--2811.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................GAT---------GATGAT---------------G------------------------------------ACGA---G---------------G.........................................................................16100.10100000000001000000
droSec2
GAAA----C----GGCAGAGTACAAGAA--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTCA------------ACGA---------------AGACGAGGAGGATCCGGAGGATGAT--------------------------------GATGATAATGAAGA------------------CGAC------------------------GAT---------GAAGAG---------------G------------------------------------AGGA---A---------------GAGCTCGA------C---GAGAAGACCAAGC-----------------------------GTC------TGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................GATAATGAAGA------------------CGAC------------------------GAT---------GAAGAG---------------G------------------------------------A................................................................................................2611.0010010
.....................................................................................................................................................................................................................................................................................................................................AC------------------------GAT---------GAAGAG---------------G------------------------------------AGGA---A---------------GAGC......................................................................2111.0010010
........................................................GTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTCA------------ACGA---------------A...........................................................................................................................................................................................................................................................................................2011.0010010
..........................................................................................................................................................................................................................................................GAGGATGAT--------------------------------GATGATAATGAAGA------------------CGA................................................................................................................................................................................................2611.0010010
..........................AA--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGC...............................................................................................................................................................................................................................................................................................................................2111.0010010
...........................A--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTC............................................................................................................................................................................................................................................................................................................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................AC------------------------GAT---------GAAGAG---------------G------------------------------------AGGA---A---------------GAG.......................................................................2011.0010100
..................................................................................................................................................................................................................................................................T--------------------------------GATGATAATGAAGA------------------CGAC------------------------GAT---------GAAGAG---------------......................................................................................................................................2811.0010100
.................................................................................................................................................................................................................................................GAGGATCCGGAGGATGAT--------------------------------GATGATA............................................................................................................................................................................................................................2511.0010100
.................................CGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTCA------------AC.............................................................................................................................................................................................................................................................................................................2211.0010010
......................CAAGAA--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGT.............................................................................................................................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................................................................................................................GAGGAGGATCCGGAGGATGAT--------------------------------GAT................................................................................................................................................................................................................................2411.0010010
.........................................................................................................................................................................................................CA------------ACGA---------------AGACGAGGAGGATCCGGA..........................................................................................................................................................................................................................................................................2411.0010010
................................................................................................................................................................................................................................................................GAT--------------------------------GATGATAATGAAGA------------------CGAC------------------------GAT---------...........................................................................................................................................................2411.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGA------C---GAGAAGACCAAGC-----------------------------GTC------TGC..2611.0010010
....................................................................................................................................................................................................................................................GATCCGGAGGATGAT--------------------------------GATGATAATGAA.......................................................................................................................................................................................................................2711.0010010
...........................................................................................................................................................................................................................................................AGGATGAT--------------------------------GATGATAATGAAGA------------------CGAC------------------------G......................................................................................................................................................................2711.0010010
..............................................................................................................................................................................................................................................................................................................AGA------------------CGAC------------------------GAT---------GAAGAG---------------G------------------------------------A................................................................................................1811.0010010
............................................................C------------------------------------------------------------------------------------------------------------------------------------GATGGCGTCA------------ACGA---------------AGACGAG.....................................................................................................................................................................................................................................................................................2211.0010010
..............................GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGT.............................................................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................CGAGGAGGATCCGGAGGATGAT--------------------------------GA.................................................................................................................................................................................................................................2411.0010100
...........................A--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGT.............................................................................................................................................................................................................................................................................................................................2211.0010010
.........................................................................................................................................................................................................................................................................................................AATGAAGA------------------CGAC------------------------GAT---------GAAGAG---------------G------------------------------------A................................................................................................2311.0010010
..........................................................................................................................................................................................................................A---------------AGACGAGGAGGATCCGGA..........................................................................................................................................................................................................................................................................1911.0010001
................................................................................................................................................................................................................................................................GAT--------------------------------GATGATAATGAAGA------------------CGAC------------------------GAT---------G..........................................................................................................................................................2511.0010010
.................................CGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTC............................................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................................................................ACGAGGAGGATCCGGAGGATGA....................................................................................................................................................................................................................................................................2211.0010100
..........................AA--GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGTCA------------...............................................................................................................................................................................................................................................................................................................2511.0010010
..............................GTTCGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGC...............................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................CA------------ACGA---------------AGACGAGGAGGATCCGGAGG........................................................................................................................................................................................................................................................................2611.0010010
..........................................................................................................................................................................................................................................AGACGAGGAGGATCCGGA..........................................................................................................................................................................................................................................................................1811.0010010
.................................CGG------------------CGGTCCC------------------------------------------------------------------------------------------------------------------------------------GATGGCGT.............................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GA---A---------------GAGCTCGA------C---GAGAAGAC................................................2011.0011000
...............................................................................................................................................................................................................................................................TGAT--------------------------------GATGATAATGAAGA------------------CGG................................................................................................................................................................................................2130.3310100
...............................................................................................................................................................................................................................................................................................................GA------------------CGAC------------------------GAT---------GAAGAG---------------G------------------------------------AGGA---..........................................................................................2030.3310010
...............................................................................................................................................................................................................................................................................................................................................................GAT---------GAAGAG---------------G------------------------------------AGGA---A---------------GAGA......................................................................1950.2010100
droYak3
CGCA----GTTGGCA--ACGGAAATATC--GCCAGG------------------G----GA---TTCATCGCCAGCCA----------------GGCGGAGGAG------------------------------------------------------------------------CCATGG---AG------------GATA---------------AGGACGTGGAGG-----------------------------------------------------ACAAC---GACGACGACGACGATGATGACGATGA---------GGAT------------GACGAGGATGAGTT------------------------------------C---G---GT---GCTGC---CGTTT---GCGA---G---------------GATAACCC------G---GA-------------------------------------------------GGAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................GACGAGGATGAGTT------------------------------------C---G---GT---GCTGC---C........................................................................................................2411.00100100000000
droEre2
AAGA----G----CGACCGCGCCAGTTC--ATCGAG------------------G----TC---TTCGATCACATCTA----------------TGAGCCGGAATCCTCTGAAACGGCGTCCAA--------------------------------------------------------------CGATGCAGATGTGGATA------------ACGATGATGATGATGACG---------------AGGATGAGGACGATGTG--------------------------------GAT---------------------------------------------------GACGACG---------------------------ACGATGACGACG------------------------AAGA---C---------------AACGACGA------T---GA-------------------------------------------------GGA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................GACGACG------------------------AAGA---C---------------AACGACGA------T---GA-------------------------------------------------GG...2512.0021000100
......................................................................................................................GTCCAA--------------------------------------------------------------CGATGCAGATGTGG..............................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................G---------------------------ACGATGACGACG------------------------AAGA---C---------------AAC.......................................................................2111.0010100000
..............................................................................................................................................................................................GCAGATGTGGATA------------ACGAT..........................................................................................................................................................................................................................................................................................................1811.0010000010
...........................................................................CTA----------------TGAGCCGGAATCCTCTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................GATGACGACG------------------------AAGA---C---------------AACGAC....................................................................2111.0010000100
.....................................................................................................................................................................................................................................GACG---------------AGGATGAGGACGATGTG--------------------------------GAT---------------------------------------------------.......................................................................................................................................................................2411.0010000100
..........................................................................................................................................................................................CGATGCAGATGTGGATA------------ACGATGAT.......................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................................GATCACATCTA----------------TGAGCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................GATGACGACG------------------------AAGA---C---------------AACG......................................................................1911.0010000010
..................................................................CGATCACATCTA----------------TGAGCCGGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........................................................................................................................................................................................................ATA------------ACGATGATGATGATGACG---------------AGGAT.........................................................................................................................................................................................................................................................................2611.0010000010
...........................................................................CTA----------------TGAGCCGGAATCCTCTGAAACGGC................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
....................................................................................................GGAATCCTCTGAAACGGC................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................GACGACG------------------------AAGA---C---------------AACGACGA------T---GA-------------------------------------------------G....2411.0010001000
......................................................................................................................GTCCAA--------------------------------------------------------------CGATGCAGATGTG...............................................................................................................................................................................................................................................................................................................................1911.0011000000
............................................................................................................................................................................................ATGCAGATGTGGATA------------ACGAT..........................................................................................................................................................................................................................................................................................................2011.0010001000
.....................................................................................................................................................................................................................................GACG---------------AGGATGAGGACGATGTG--------------------------------GA...........................................................................................................................................................................................................................2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................CG---------------------------ACGATGACGACG------------------------AAGA---C---------------AACGACG...................................................................2611.0011000000
.......................................................................................................................................................................................................GATA------------ACGATGATGATGATGACG---------------AG............................................................................................................................................................................................................................................................................2411.0010000100
........................................................................................................................................................................................................ATA------------ACGATGATGATGATGACG---------------AG............................................................................................................................................................................................................................................................................2311.0010000010
..........................................................................................................................................................................................CGATGCAGATGTGGATA------------ACGAT..........................................................................................................................................................................................................................................................................................................2211.0011000000
............................................................................................................................................................................................................................GATGATGATGACG---------------AGGATGAG......................................................................................................................................................................................................................................................................2120.5011000000
.........................................................................................................................................................................................................................GATGATGATGATGACG---------------AGGATGAGGA....................................................................................................................................................................................................................................................................2620.5010000100
......................................................................................................................................................................................................................................................................GTG--------------------------------GAT---------------------------------------------------GACGACG---------------------------ACGAT................................................................................................................................1820.5010000100
.........................................................................................................................................................................................................................GATGATGATGATGACG---------------AGGATGAG......................................................................................................................................................................................................................................................................2420.5010000100
.............................................................................................................................................................................................................................ATGATGATGACG---------------AGGATGAGGA....................................................................................................................................................................................................................................................................2220.5010000100
...............................................................................................................................................................................................................................GATGATGACG---------------AGGATGAG......................................................................................................................................................................................................................................................................1820.5010000010
...............................................................................................................................................................................................................................GATGATGACG---------------AGGATGAGGA....................................................................................................................................................................................................................................................................2020.5010000100
..........................................................................................................................................................................................................................ATGATGATGATGACG---------------AGG...........................................................................................................................................................................................................................................................................1880.1310000010
dp5
AGGA----G----CGGCCCCGCCAGTTC--ATCGAG------------------G----TA---TTCGACCACATCTA----------------CGAGCCGGAGTCCTCGGAGACGGCCTCCAA--------------------------------------------------------------CGATGCCGATGTCGATG------------------CCGACGACGACG--------------------------------------------ACGACGAC------------GAGGACGTCGATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GACGC---CGATGACGAGGA---C---------------CAT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................ATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GAC..............................................................................................................2612.0020000000002
......................................................................................................................................................................................................CGATG------------------CCGACGACGACG--------------------------------------------ACGACGAC------------GA...........................................................................................................................................................................................................................2711.0010010000000
................................................................................................AGCCGGAGTCCTCGGAGACG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................CGGAGTCCTCGGAGACGGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................TGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GA...............................................................................................................2411.0010000000001
......................................................................................................................................................................................................CGATG------------------CCGACGACGACG--------------------------------------------ACGACGAC------------.............................................................................................................................................................................................................................2511.0010100000000
.......................................................................................................................................................................................................................................CG--------------------------------------------ACGACGAC------------GAGGACGTCGATG................................................................................................................................................................................................................2311.0010100000000
.......................AGTTC--ATCGAG------------------G----TA---TTCGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................CGAGCCGGAGTCCTCGGAGACGGCCTC.............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
...............................................................................................................................................................................................................................................................................................................................................................GAC---------GACGA------------------------A---G---AC---GACGC---C........................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................CGTCGATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---..........................................................................................................................2511.0010100000000
................................................................................................................................................................................................CGATGTCGATG------------------CCGACGAC.................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................GATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GA...............................................................................................................2611.0010000000001
....................................................................................................................................................................................................................................................................................................................TGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GACGC---.........................................................................................................2711.0010000000001
........................................................................................................................................................................................................................................................................................................................................................CGAC---GAC---------GACGA------------------------A---G---AC---GACGC---CGA......................................................................................................2411.0010100000000
.................................................................................................................................................................................................GATGTCGATG------------------CCGACGACGACG--------------------------------------------A................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................GATGTCGATG------------------CCGACGACGAC..............................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................ACGACGACG--------------------------------------------ACGACGAC------------GAGGACGTC....................................................................................................................................................................................................................2611.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................GACGC---CGATGACGAGGA---C---------------C.........................................................................1911.0010001000000
..............................................................................................................................................................................................GCCGATGTCGATG------------------CCGACGAC.................................................................................................................................................................................................................................................................................................2111.0010010000000
..........................................................................TCTA----------------CGAGCCGGAGTCCTCGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................AC---GACGC---CGATGACGAGGA---C---------------..........................................................................2011.0010100000000
...........................................................................CTA----------------CGAGCCGGAGTCCTCGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................CGATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GA...............................................................................................................2711.0010000000001
.......................................................................................................................................................................................................................................................................................GACGAC------------GAGGACGTCGATGA---------------C---------------GA..............................................................................................................................................................................2311.0010000100000
.................................................................................................................................................................................................................................................................................................................CGATGA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---AC---GAC..............................................................................................................2811.0010000000001
.....................................................................................................................................................................................................................................GACG--------------------------------------------ACGACGAC------------GAGGACGTC....................................................................................................................................................................................................................2120.5010100000000
......................................................................................................................................................................................................CGATG------------------CCGACGACGACG--------------------------------------------AC...............................................................................................................................................................................................................................................1920.5010000001000
...............................................................................................................................................................................................CCGATGTCGATG------------------CCG......................................................................................................................................................................................................................................................................................................15140.0710000000010
.................................................................................................................................................................................................................................................................................................................CGATGA---------------C---------------GACGAC---GAC---------GACGA------------------------..............................................................................................................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................GA---------------C---------------GACGAC---GAC---------GACGA------------------------A---G---A.....................................................................................................................20200.0510100000000
.................................................................................................................................................................................................................................CGACGACG--------------------------------------------ACGACGAC------------GAGGA........................................................................................................................................................................................................................21200.0510100000000
droPer2
ACAG----T----CTGCGTCCCTTGCCG-----------------------------------------CCGTTGCCGTCTAGACCTTTAAGGTCGTTGCAG--G-----------------------------------------------------------------------------------------AGTCGGATA------------GCGATGAGGACTACGACC--------------------------------TAGATGAGGAAGACGATGACGATGATGATGACGAAGAGGA------------------CGAC------------------------GAT---------GTTGACGAGGAGTACGAGAC------------CA------------------------TTAA---T---------------GAGCTCGA------T---GT-------------------------------------------------GGA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................CGGATA------------GCGATGAGGACT...................................................................................................................................................................................................................................................................................................1813.003300000
....................................................................................................................................................................................................................................................................................................ATGACGAAGAGGA------------------CGAC------------------------GAT---------...........................................................................................................................................................2012.002110000
...........................................................................................................................................................................................................................................................................................ACGATGATGATGACGAAGAGGA------------------...................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................GATGATGACGAAGAGGA------------------C..................................................................................................................................................................................................1811.001010000
......................................................................................................................................................................................................................................................................................................GACGAAGAGGA------------------CGAC------------------------GAT---------GTT........................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................GACGATGATGATGACGAAGAGGA------------------A..................................................................................................................................................................................................2411.001010000
..........................................................................................................................................................................................................................................................................................GACGATGATGATGACGAAGAGG......................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................GAGGACTACGACC--------------------------------TAGATGAGGAA..................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................GTACGAGAC------------CA------------------------TTAA---T---------------GAGCT.....................................................................2111.001000001
.....................................................................................................................................................................................................................................GACC--------------------------------TAGATGAGGAAGACGATGAC.........................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................GATGACGATGATGATGAC.............................................................................................................................................................................................................................18110.364400000
.......................................................................................................................................................................................................................................................................................GATGACGATGATGATGACG............................................................................................................................................................................................................................1990.111000001
....................................................................................................................................................................................................................................................................................GACGATGACGATGATGATGACT............................................................................................................................................................................................................................22110.091001000
droWil2
GATG----A----TAGCTCAGA-----------------------------------------------TGATGACGA----------------TGG---------------------AGAGGATACT--------------------------------------------------------TCT------------GATG------------ACGATGATGATGATGATG--------------------------------AT------------------------GAC---GACGACGACGATGA---------------T------------------------GATGATGATG---ATG------------------ATGA------CGACGACGATGATGACGACG------AAGAGGAG---------------GACGATGA------T---GT-------------------------------------------------GGA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................CG------AAGAGGAG---------------GACGATGA------T---GT-------------------------------------------------GG...2311.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGACGACG------AAGAGGAG---------------GAC.......................................................................2711.00100100
.........................................................................GACGA----------------TGG---------------------AGAGGATACT--------------------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................1911.00100100
............................................................................GA----------------TGG---------------------AGAGGATACT--------------------------------------------------------TCT------------GATG------------ACGAT..........................................................................................................................................................................................................................................................................................................2711.00100100
..............................................................................................................................................................................................................................................................................................................................................................................G------------------ATGA------CGACGACGATGATGACGACG------.................................................................................................2511.00100010
..................CAGA-----------------------------------------------TGATGACGA----------------TGG---------------------AGA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGATGACGACG------AAGA.............................................................................................1911.00100100
................CTCAGA-----------------------------------------------TGATGACGA----------------TGG---------------------................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.ATG----A----TAGCTCAGA-----------------------------------------------TGATGACGA----------------TGG---------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...............................................................................................................................................................................................................................................................................................................................................................GATGATGATG---ATG------------------ATGA------CGACGACGAT.................................................................................................................2760.67400400
..................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGACG------AAGAGGA..........................................................................................2020.50100100
....................GA-----------------------------------------------TGATGACGA----------------TGG---------------------AGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGACGACG------AAGAGG...........................................................................................1830.33100010
..................................................................................................................................................................................................................................................................................................................................................................GATGATG---ATG------------------ATGA------CGACGACGAT.................................................................................................................2470.29200110
.........................................................................................................................................................................................................................................................................................................GACGACGACGATGA---------------T------------------------GATGAT.................................................................................................................................................................21200.25500500
...............................................................................................................................................................................................................................GATGATGATG--------------------------------AT------------------------GAC---GACGAC.......................................................................................................................................................................................................................21200.20420200
..................................................................................................................................................................................................................................................................................................................................................................GATGATG---ATG------------------ATGA------CGACGAC....................................................................................................................21200.20420200
..................................................................................................................................................................................................................................GATGATG--------------------------------AT------------------------GAC---GACGACGACGAT.................................................................................................................................................................................................................2470.14100010
.........................................................................................................................................................................................CT------------GATG------------ACGATGATGATGATGATG--------------------------------A............................................................................................................................................................................................................................................................2580.13100100
........................................................................................................................................................................................................................................................................................................................................................................G---ATG------------------ATGA------CGACGACGATGA...............................................................................................................20190.11200200
.....................................................................................................................................................................................................................................................................................................................................................................GATG---ATG------------------ATGA------CGACGACGA..................................................................................................................20200.10200200
..........................................................................................................................................................................................................G------------ACGATGATGATGATGATG--------------------------------AT------------------------GAC---G............................................................................................................................................................................................................................25200.10200020
....................................................................................................................................................................................................................................................................................................................................................................TGATG---ATG------------------ATGA------CGACGACGAT.................................................................................................................22100.10100010
...............................................................................................................................................................................................................................................................................................................................................................GATGATGATG---ATG------------------ATGA------CGACGA.....................................................................................................................23200.10201010
..................................................................................................................................................................................................................................GATGATG--------------------------------AT------------------------GAC---GACGAC.......................................................................................................................................................................................................................18200.10220000
.....................................................................................................................................................................................................................................................................................................................................................................GATG---ATG------------------ATGA------CGACGAC....................................................................................................................18200.10220000
..................................................................................................................................................................................................................................GATGATG--------------------------------AT------------------------GAC---GACGACGA.....................................................................................................................................................................................................................20200.10200200
..............................................................................................................................................................................................................................................................................................................CGACGATGA---------------T------------------------GATGATGATG---ATG------------------.....................................................................................................................................23200.10200020
........................................................................................................................................................................................................................................................................................................................................................................G---ATG------------------ATGA------CGACGACGATGATG.............................................................................................................22110.09100010
............................................................................................................................................................................................................................................................................................................................................................................................................GACGACGATGATGACGACG------.................................................................................................19130.08100010
.....................................................................................................................................................................................................................................GATG--------------------------------AT------------------------GAC---GACGACGACGATG................................................................................................................................................................................................................22140.07100010
.....................................................................................................................................................................................................................................................................................................................................................................GATG---ATG------------------ATGA------CGACGACGAT.................................................................................................................21150.07100100
.....................................................................................................................................................................................................................................................................................................................GA---------------T------------------------GATGATGATG---ATG------------------ATGA------CGAC.......................................................................................................................24200.05100010
.................................................................................................................................................................................................................................TGATGATG--------------------------------AT------------------------GAC---GACGAC.......................................................................................................................................................................................................................19200.05100100
...............................................................................................................................................................................................................................GATGATGATG--------------------------------AT------------------------GAC---GACGACGACG...................................................................................................................................................................................................................25200.05100010
.........................................................................................................................................................................................................................................................................AT------------------------GAC---GACGACGACGATGA---------------T------------------------G......................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................ATGATGATG--------------------------------AT------------------------GAC---GACGAC.......................................................................................................................................................................................................................20200.05110000
..................................................................................................................................................................................................................................................................................................................................................................GATGATG---ATG------------------ATGA------CGACGA.....................................................................................................................20200.05100010
............................................................................................................................................................................................................................GATGATGATGATG--------------------------------AT------------------------GAC---GACGA........................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................................................................ATG------------------ATGA------CGACGACGATGA...............................................................................................................19200.05100010
........................................................................................................................................................................................................................................................................................................................................................................G---ATG------------------ATGA------CGACGACGAT.................................................................................................................18200.05101000
................................................................................................................................................................................................................................................................................................................ACGATGA---------------T------------------------GATGATGATG---AT........................................................................................................................................................20200.05100010
.....................................................................................................................................................................................................................................................................................................................GA---------------T------------------------GATGATGATG---ATG------------------ATGA------C..........................................................................................................................21200.05101000
.........................................................................................................................................................................................................................GATGATGATGATGATG--------------------------------AT------------------------GAC---GAC..........................................................................................................................................................................................................................24200.05100010
.........................................................................................................................................................................................................................GATGATGATGATGATG--------------------------------AT------------------------GAC---.............................................................................................................................................................................................................................21200.05110000
....................................................................................................................................................................................................................................................................................................................................................................TGATG---ATG------------------ATGA------CGACGAC....................................................................................................................19200.05100100
......................................................................................................................................................................................................................................................................................................................................T------------------------GATGATGATG---ATG------------------ATGA------CG.........................................................................................................................20200.05100010
...............................................................................................................................................................................................................................GATGATGATG--------------------------------AT------------------------GAC---GACGA........................................................................................................................................................................................................................20200.05100010
..........................................................................................................................................................................................................................................................................T------------------------GAC---GACGACGACGATGA---------------................................................................................................................................................................................................18200.05100010
............................................................................................................................................................................................................................GATGATGATGATG--------------------------------AT------------------------GAC---GAC..........................................................................................................................................................................................................................21200.05100100
............................................................................................................................................................................................................................GATGATGATGATG--------------------------------AT------------------------GAC---GA...........................................................................................................................................................................................................................20200.05101000
................................................................................................................................................................................................................................................................................................................ACGATGA---------------T------------------------GATGATGATG---ATG------------------AT...................................................................................................................................23200.05100100
..........................................................................................................................................................................................................G------------ACGATGATGATGATGAT..............................................................................................................................................................................................................................................................................................18200.05110000
..........................................................................................................................................................................................................................ATGATGATGATGATG--------------------------------AT------------------------GAC---.............................................................................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................................GATGATGATG--------------------------------AT------------------------GAC---GACG.........................................................................................................................................................................................................................19200.05100100
...........................................................................................................................................................................................................................................................................................................CGACGACGATGA---------------T------------------------GATGATG................................................................................................................................................................20200.05100010
..........................................................................................................................................................................................................................................................................................................ACGACGACGATGA---------------T------------------------GATGAT.................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................................................................................................................................................................GATGATGATG---ATG------------------ATGA------CGAC.......................................................................................................................21200.05100100
...........................................................................................................................................................................................................................................................................................................CGACGACGATGA---------------T------------------------GATGATGATG---A.........................................................................................................................................................24200.05100010
.....................................................................................................................................................................................................................................................................................................C---GACGACGACGATGA---------------T------------------------GATGATGATG---..........................................................................................................................................................26200.05100010
..........................................................................................................................................................................................................................................................................T------------------------GAC---GACGACGACGATGA---------------T------------------------.......................................................................................................................................................................19200.05101000
..................................................................................................................................................................................................................................................................................................................................................................GATGATG---ATG------------------ATGA------CGACG......................................................................................................................19200.05100100
droVir3
CCGCCGCGG----CCGC-CATGCTGGGC--ATGATG---ACGCCCCTTAGCCAGG----TG---GCCGAGACCAT----------G----------C--CAC--G------AG------GCGAA---CGTGAA---------GCCGACGCAGATCACCCG------------------------ACC------------GAGG---------AGGGCGAGGACGAGGAGGAGGAGGAGG---------------AGGAAGACGTA--------------GATGACAAC---GACGACGACGACGA------------------TGAT------------------------GAC---------GATGAT---------------G------------------------------------AGGA---T---------------GAGAATGA------G---GA-------------------------------------------------GGA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................G----------C--CAC--G------AG------GCGAA---CGTGAA---------GCC.....................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000200000000000000000000000000
............................................CCTTAGCCAGG----TG---GCCGAGACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CGTA--------------GATGACAAC---GACGAC.............................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................GATCACCCG------------------------ACC------------GAGG---------AG................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................GTGAA---------GCCGACGCAGATCACCCG------------------------ACC------------...............................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
...................................................................GAGACCAT----------G----------C--CAC--G------AG------GCGAA---CGT....................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................GACGCAGATCACCCG------------------------ACC------------GAGG---------AG................................................................................................................................................................................................................................................................................................................2411.001000000010000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GA------------------TGAT------------------------GAC---------GATGAT---------------G------------------------------------AGGA---T---------------GAG.......................................................................2411.001000000000001000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATGAT---------------G------------------------------------AGGA---T---------------GAGAATGA------G---GA-------------------------------------------------G....2411.001000000000100000000000000000000000000000000000000000000000000000
.....GCGG----CCGC-CATGCTGGGC--ATGATG---ACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AAC---GACGACGACGACGA------------------TGAT------------------------.......................................................................................................................................................................2120.501000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................T---------------G------------------------------------AGGA---T---------------GAGAATGA------G---GA-------------------------------------------------GGA--2120.501000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GACGACGACGACGA------------------TGAT------------------------GAC---------GATGA......................................................................................................................................................2620.501000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GA------------------TGAT------------------------GAC---------GATGAT---------------G------------------------------------AG...............................................................................................1830.331000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GGAGGAGGAGGAGG---------------AGGA....................................................................................................................................................................................................................................................................18200.204004000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CGACGA------------------TGAT------------------------GAC---------GATGAT---------------......................................................................................................................................1960.171001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................C---GACGACGACGACGA------------------TGAT------------------------GAC---------GAG........................................................................................................................................................2560.171000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GACGACGACGACGA------------------TGAT------------------------GAC---------...........................................................................................................................................................2180.131100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GACGA------------------TGAT------------------------GAC---------GATGAT---------------G------------------------------------A................................................................................................2080.131000000010000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GACGAGGAGGAGGAGGAGG---------------........................................................................................................................................................................................................................................................................1990.111001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GAGGAGGAGGAGGAGG---------------AGGAA...................................................................................................................................................................................................................................................................21100.101000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................GACGACGACGA------------------TGAT------------------------GAC---------G..........................................................................................................................................................19110.091000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GACGACGACGA------------------TGAT------------------------GAC---------...........................................................................................................................................................18130.081001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AC---GACGACGACGACGA------------------TGAT------------------------GA.....................................................................................................................................................................22160.061000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CGACGACGACGA------------------TGAT------------------------GA.....................................................................................................................................................................18200.051000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AGGAGGAGGAGGAGG---------------AGGA....................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GACGACGA------------------TGAT------------------------GAC---------GATGAC---------------......................................................................................................................................21200.051100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GACGACGACGACGA------------------TGAT------------------------GA.....................................................................................................................................................................20200.051100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAGGAGGAGGAGG---------------AGGAA...................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
GTGG----G----CGCTGTGGGCGTGTC--AGCGGGGCCG--------------A----TC---GCAG-CGCCTGCTGCTGGTATT------------------------------------------------------AG-----------TGGCGCCG---------------------------GTGCAGCGTCTGATG------------ACGAAGACGACGACGACG--------------------------------AC------------------------GAC---GAGGACGATGAATA---------------T------------------------GATGATGATG---ATG------------------ATGG------TG------------------------GTGA---T---------------GATATTGA------T---GA-------------------------------------------------TGGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAGC--AG----CTGCTCAGGC-----------------------------------------------AACAGCAA----------------CGG-ATG---GATGCCGAGGAGCAGCTGA---GTGGCAGCGATTGTGC-----------GCAGAGCGATG------------------------ATGAGGCACAGGATG---------------A---------------GGAC------------------GACGACGAC--------GACGACGAC---------------GATGATGATGACGA---------------T------------------------GAAGATGATGATGAAGAT---------------G------------------------------------GGGA---G---------------GAGGACGA------T---GA-------------------------------------------------TGA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................A----------------CGG-ATG---GATGCCGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
...............................................................................................................................................................................................................................................................................................................................................................................AT---------------G------------------------------------GGGA---G---------------GAGGACGA------T---GA-------------------------------------------------T....2011.00101
..........................................................................GCAA----------------CGG-ATG---GATGCCGAGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101
.......................................................................................................................................................................................................................................................................................GAC---------------GATGATGATGACGA---------------T------------------------.......................................................................................................................................................................18200.05110

Generated: 05/18/2015 at 12:35 AM