ID:

dan_1123

 Coordinate:

scaffold_13045:429792-429942 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.9 -12.6 -12.5

Flybase annnotation

exon [dana_GLEANR_5503:1]; CDS [Dana\GF21679-cds]; intron [Dana\GF21679-in]

No Repeatable elements found

mature
  1. scaffold_328:1110-1136 +
  2. scaffold_3867:1281-1307 +
  3. scaffold_7041:113-139 +
  4. scaffold_10264:670-696 +
  5. scaffold_12948:204631-204657 +
  6. scaffold_13045:347937-347963 -
  7. dan_1123  scaffold_13045:429911-429937 -
  8. scaffold_13137:597915-597941 +
  9. scaffold_13137:976046-976072 +
  10. scaffold_13137:989533-989559 +
  11. scaffold_13228:416292-416318 +
  12. scaffold_13230:1456515-1456541 +
  13. scaffold_13230:1786867-1786893 +
  14. scaffold_13258:952518-952544 +
  15. scaffold_13260:666846-666872 +
  16. scaffold_13340:11701850-11701876 +
  17. scaffold_13340:14651292-14651318 +
  18. scaffold_13417:3749746-3749772 +
  19. scaffold_13417:5704891-5704917 +
  20. scaffold_13767:1453138-1453164 +
star
  1. scaffold_1110:2080-2107 -
  2. scaffold_7041:229-256 +
  3. scaffold_12905:565198-565225 -
  4. scaffold_13045:342003-342030 -
  5. scaffold_13045:347820-347847 -
  6. dan_1123  scaffold_13045:429794-429821 -
  7. scaffold_13077:89960-89987 +
  8. scaffold_13077:151608-151635 +
  9. scaffold_13082:605031-605058 +
  10. scaffold_13099:3135962-3135989 -
  11. scaffold_13111:1394048-1394075 -
  12. scaffold_13137:598031-598058 +
  13. scaffold_13165:12313-12340 -
  14. scaffold_13250:666662-666689 +
  15. scaffold_13260:267664-267691 -
  16. scaffold_13333:553178-553205 -
  17. scaffold_13339:2691617-2691644 -
  18. scaffold_13417:2900061-2900088 -
  19. scaffold_13417:5705004-5705031 +
  20. scaffold_13767:1453251-1453278 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCATGAAATCGTTGTTTTTGATGATATTTTCAGCATGGGCCTCTCCCAAGTAAATAATATTTATAATGATTTATCGAAAATTCTGGATCTGATATTTTTAAATAATGTCGTTCATAGTAAAGTAGAAATTTGTAATGTACCATTAAGTCCGCGTGATATGCACCATAAGCCATTGTTGATACACATTGAATTTTATAGTTTTCTGCCTTCCCCCTCACCTATTTCTTATTATCACTTTAATGAGTCTAAC
*******************************************************...((((.((((((.(((((........(((((..(((((((.......))))))).)).)))...............(((((...))))).....((((...))))...))))).)))))).)))).................**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body
.................................................................................................................................TTTGTAATGTACCATTAAGTCCGCTTGA.............................................................................................. 28 1 1 1.00 1 1 0 0 0
..............................TCAGCATGAGCCTGTCGCA.......................................................................................................................................................................................................... 19 3 20 0.30 6 6 0 0 0
......................TGATATTTTCAGCATGGGCCTCTCCC........................................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0
.......................GATATTTTCAGCATGGGCCTCTCCCAAG........................................................................................................................................................................................................ 28 0 5 0.20 1 1 0 0 0
CGCATGAAATCGTTGTTTTTGATGATA................................................................................................................................................................................................................................ 27 0 6 0.17 1 0 0 1 0
....TGAAATCGTTGTTTTTGATGATATTT............................................................................................................................................................................................................................. 26 0 6 0.17 1 1 0 0 0
.....GAAAACGTGGTTTTTGATGC.................................................................................................................................................................................................................................. 20 3 17 0.06 1 0 1 0 0
....................................................................................................................................................................................................TAGTTTTCTGCCTTCCCCCTCACCTA............................. 26 0 20 0.05 1 0 1 0 0
.......................................................TAATATTTATAATGATTTATCGAAAAT......................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
...........................................................................................................................................................................CATTGTTGATACACATTGAATTTTATAG.................................................... 28 0 20 0.05 1 1 0 0 0
...............................................................................................TTTTTAAATAATGTCGTTCA........................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
...................................................................TGATTTATCGAAAATTCTGGATCT................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
.................................................................................................................................................................................................TTATAGTTTTCTGCCTTCCCCCTCACC............................... 27 0 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................TTTTATAGTTTTCTGCCTTCCCCCTC.................................. 26 0 20 0.05 1 0 1 0 0
...............................................................AGAATGATTTATCGAAAATTCTGGATC................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................TTATAGTTTTCTGCCTTCCCCCTCA................................. 25 0 20 0.05 1 0 1 0 0
............................................................................................ATATTTTTAAATAATGTCGTT.......................................................................................................................................... 21 0 20 0.05 1 0 0 0 1
....................................................................................................................................................................GATAAGCCATTGTTGATAC.................................................................... 19 1 20 0.05 1 0 1 0 0
...................................................................TGATTTATCGAAAATTCTGGATCTGATA............................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................TATAGTTTTCTGCCTTCCCCCTCAC................................ 25 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................TTTTATAGTTTTCTGCCTTCCCC..................................... 23 0 20 0.05 1 1 0 0 0
......................................................................................................................TAAAGTAGAACTTTGTAATGTACCATC.......................................................................................................... 27 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

GCGTACTTTAGCAACAAAAACTACTATAAAAGTCGTACCCGGAGAGGGTTCATTTATTATAAATATTACTAAATAGCTTTTAAGACCTAGACTATAAAAATTTATTACAGCAAGTATCATTTCATCTTTAAACATTACATGGTAATTCAGGCGCACTATACGTGGTATTCGGTAACAACTATGTGTAACTTAAAATATCAAAAGACGGAAGGGGGAGTGGATAAAGAATAATAGTGAAATTACTCAGATTG
****************************************************...((((.((((((.(((((........(((((..(((((((.......))))))).)).)))...............(((((...))))).....((((...))))...))))).)))))).)))).................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body
......................ACTATAAAAGTCGTACCCGGAGAGGGTT......................................................................................................................................................................................................... 28 0 5 0.20 1 0 1 0 0
....ACTTTAGCAACAAAAACTACTATAAA............................................................................................................................................................................................................................. 26 0 6 0.17 1 1 0 0 0
....................................................................................................................................................................................................................GGGAGTGGATAAAGAATAAT................... 20 0 20 0.15 3 1 2 0 0
.........................................................................................................................................................CACTATACGTGGTATTCGGTAACAACT....................................................................... 27 0 20 0.10 2 1 0 1 0
....................................................................................................................................................................GTATTCGGTAACAACTATGTGTAACT............................................................. 26 0 20 0.10 2 2 0 0 0
.....CTTAAGCAACAAGAACTAATA................................................................................................................................................................................................................................. 21 3 12 0.08 1 0 0 1 0
..............................................................................................................................................................TAAGTGGTATGCGGGAACAA......................................................................... 20 3 20 0.05 1 0 0 0 1
..............................................................................................................................................................................................................AAAAGGGGGAGTGGATAAAGAATA..................... 24 2 20 0.05 1 0 0 0 1
.....................................................................................................TTATTACAGCAAGTATCATTTCATCTT........................................................................................................................... 27 0 20 0.05 1 0 1 0 0
...................................................................................................................................................................................................................GGGGAGTGGATAAAGAATAATAG................. 23 0 20 0.05 1 1 0 0 0
..................................................................................................................................................................................................................GGGGGAGTGGATAAAGAATAATAGTG............... 26 0 20 0.05 1 1 0 0 0
......................................CCGGAGAGGGTTCATTTATTA................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0
...................................................................................................................................................................................................................GGGGAGTGGATAAAGAATAATAGTG............... 25 0 20 0.05 1 0 0 1 0
...................................................................................................................................................................................................................GGGGAGTGGATAAAGAATAAT................... 21 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................TAAGTGGTACTCGGGAACAA......................................................................... 20 3 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................AAAATATCAAAAGACGGAAGGGGGAGT................................. 27 0 20 0.05 1 1 0 0 0
......................................CCGGAGAGGGTTCATTTATTAT............................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................AAGGGGGAGTGGATAAAGAATA..................... 22 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................GGAGTGGATAAAGAATAATAGT................ 22 0 20 0.05 1 0 0 1 0
...................................................................................................................................................................GGTATTCGGTAACAACTATGTGTAACT............................................................. 27 0 20 0.05 1 1 0 0 0
......................................CCGGAGAGGGTTCATTTATTATA.............................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................................................GGGGGAGTGGATAAAGAATAATAGT................ 25 0 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................................AGGGGGAGTGGATAAAGAATAATAGT................ 26 0 20 0.05 1 1 0 0 0
.....................................CCCGGAGAGGGTTCATTTATTATA.............................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................CGTAACTTAAAATATCAAA................................................. 19 1 20 0.05 1 0 1 0 0
........................................................................................................................TTCATCTTTAAACATTACATGGTAAGT........................................................................................................ 27 1 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................AAGGGGGAGTGGATAAAGAAT...................... 21 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................GGTATTCGGTAACAACTATGTGTAA............................................................... 25 0 20 0.05 1 0 0 1 0
...............................................................................................................................................................................................................GAAGGGGGATTGGATAAAGAATA..................... 23 1 20 0.05 1 0 1 0 0
......................................CCGGAGAGGGTTCATTTATTATAA............................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................................GGAGTGGATAAAGAATAATAGTGAAAT........... 27 0 20 0.05 1 0 1 0 0
.................................................................................................................................AAACATTACATGGTAATTCAGGC................................................................................................... 23 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................GGGAGTGGATAAAGAATA..................... 18 0 20 0.05 1 0 0 1 0
.................................................................................................................................................................................................................AGGGGGAGTGGATAAAGAATAAT................... 23 0 20 0.05 1 0 1 0 0
...................................................................................................................................................................................................................GGGGAGTGGATAAAGAATAATAGT................ 24 0 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13045:429742-429992 - dan_1123 CGCATGAAATCGTTGTTTTTGATGATATTTT-----CAGCATGGGCCTCTCCCAAGTAAATAATAT--TTAT------------AATGA-TTTATCGAAAATTCTGGATCTGATATTTTTAAATAATGTCGTTCATAGTAAAGTAGAAATTTGTAATG-TACCATTAAGTCCGC-GTGATATGCACCATAAGCCATTGTTGATACACATTGAATTTTATAGTTTTCTGCCTTCCCCCTCACCTATTTCTTATTATCACTTTAATGAGTCTAAC----------------
droBip1 scf7180000391442:7653-7903 - GTCATGAAATTGTAGTTTTAGATGATATTTT-----TAGTCTGGGCCTCTCCCAAGTAAATAATAT--TTTT------------AATGA-TTTATCCAAAATTCTTGATCTTAAATTTTTAAATAATTTGGTTAATAGTAAAGTAGAATTATGCAATG-TACCATTAAGTCCTT-GTGATATGCACCACAAGCCATTGGTAATTAATATTGAGTTTTATAGTTTTCTGCCTTCTGCTTCTCCAATTCCATATTATCATCTGAATGATACTAAC----------------
droKik1 scf7180000302348:4213-4454 + CTCAGGAAATCTTGGTCATAGATGAGCTTTT-----CAGTCTCGGTCTGGTCCAGATAAATCACGT--ATTT------------AATAA-ATTACATAAACTTCTAGATCTAATTTTTGTAAGTCAAGATCTGAACTTAAATCTAGTTTGCAGTAGTA-ATCCTATTTCTGAGT-GCGATGCCCACCACCAGCCCTTACTGATTTCATTATTTACTTATATATTTCCGCCAAGCACATATTCATTGT---------ACATTAATATGAACAAT----------------
droEle1 scf7180000491326:572-822 + CACATGATATTATTGTTTTCGATGATTGTTA-----TAGTATGGGCCTCACCCAAATAAATTATGT--CTTT------------AATGA-TTTGCATAGGCTACTAGATTTAATATTCATCAATTCTATTGTTCATTCCTCGGTAAGCCTTGCTGAAT-TTAGTATTTCCAGTT-GTGATGTTCATCATAAGCCCTTATGCTTTAATATTGAATTTTATAATTTCTTACCTGTTGTTAACTTTATTCCTATGTATAATTTTGATAATGCCAGC----------------
droRho1 scf7180000777717:4536-4644 + AACATGAAATTATTGTCTTTGGTGTTTGTTCTATGCTAGTATGGGCCTAACTCAAATAAATAATAT--TTTT------------AACAG-TTTATATAAGTTACTCGAATTAATATTTTGTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000297080:20924-21174 - CACACGAGATTCTTTTCATCGATGATAGTTT-----CAGTATGGGCTTAATACAAGTCAATAACAT--ATTC------------AATAA-CTTACATAAAATTTTAGACTTAGTATTCCTTAGCGCTGATATTAACTTTTCTTTAGTCCAATGTAGTT-CACCTATAAGCAATT-GTGATATCCATCATAGACCATTGCTACTAGGTATAAACTTTTACAGTTTTGCGCCTTCAGCTGAATATTCACCTAGATTTATTTTCAATGAAACCAGC----------------
droTak1 scf7180000414889:15682-15934 - CACATGAAATTATTGTCATTGATGATTGTTA-----TAGTATGGGCCTCACCCAAATAAATAATAT--CTTT-----------TAATGATTTTGCATAGGCTACTAGATTTAATTTTCATCAATTCGATTGTTCATTCCTCGGTAAGCCTTGCTGAAT-ATACTATTTCTAATT-GTGATTCTCATCATAAACCAATTTGCTTTAATATTGAATTTTATAACTTTTTACCAACAGTTAATGTAGTTCCTATGTATAACTTTAATGATTCCAGC----------------
droSec2 scaffold_184:20825-20998 + CTCATGAATTTATTTTTATTGATGATTTTTA-----TAGCATGGGCCTCACCCAAATTAATAATGT--TTTC------------AAAGT-TTACCGCAAGTTACTTGATTTAATTTATAGCAGTCCTGTTTTAG----CTCAATTGTTCTGAACGAAT-TTACTAATTCAGGCTGGTGATGTACATTACAAGCTATTAT------------------------------------------------------------------------------------------
droYak3 v2_chr3h_random_002:688560-688801 + CT-----------TGTTATTGATGATTTTTA-----TAGAATGGGCATCACCCAAATGTTTCAAATGTTTTC------------AATGT-TTCGCGCAAGTTACTTAATTTACTTTATACCAGTTCTGTTCATAATTCCTCAATTGCTATCGCCAAATTTTACCATTTCAGGTT-GTGATATACATCACCTTACGTTACGTATTAACATTGAGTTTCTATATTTTCTAAAGTTTGTTAATGTAGTTCAAAAATTTAATCTAAGT-ACTTTAAC----------------
droEre2 scaffold_4929:22272017-22272251 + CTCATGAAATTATTGTTATTGATGATTTTTA-----TAGTATGGGCCTCATCCAAATTAATAATGT--TTTC------------AATGT-TTCGCGCAAGTTACTTGATTTAATCTATACTAGTTCTGTTTCTAACTCATCAATTGCTATCGCCGAAT-TTATTATTTCCAGTT-GTGATGTAAATCACCAGCCATTATGTTTTAACATTGAGTTTTTGCATTTTCTACCATCTGTTATTAAAATTCCTAAATTTAA--------------------------------
dp5 Unknown_group_838:8792-9041 + CGAACGAGATTCTTTTCCTAGATGACTGTTT-----TCGTATGGGCTTATCCCAAGTAAATAATGT--TTTT------------AATAG-GCTAAATAAGATTCTAGACTTAATTTTTGTTAGTTCGGATATAGATTGCCATGTTACATGTTGCGAAC-TCCCTATCGCGGAAT-GCGACATGCATCATATGCCGTTGGAATACTTAGTCAATTTCCATTTTTATTCGCCCTGGGCGGAACCATTTTATGAATGCTTCTTTTCT-AGTGTAAG----------------
droPer2 scaffold_111:35753-36014 + CGAACGAGATTCTTTTCCTAGACGACTGTTT-----TAGTATGGGCCTATCCCAAGTAAATAATTG--TTTTAATAAGCTGTTTAATAA-GCTAAATAAGATTCTAGACTTAATTTTTGTTAGTTCGGATATAGATTGCCATGTTACATGTTGCGAAC-TCCCCATCGCGGAAT-ATGACATGCATCATATGCCGTTGGAATTCTTAGTAAATTTCCATTGTTATTCGCCCTGGGCGGAACCATTTTATGAATGCTTCTTTTCT-AGTGTAAG----------------
droVir3 scaffold_13036:669892-670158 - CATACGAAATTGTTGTAATTAATGAATTACG-----TAGTATGGGCTTATACCAAATTAATATAAT--TTTC------------AAGCA-ATTGCATAAAATATTAGATCTAATACTTCTAAATTTAGACGTTAATTTTAACTAAGGTAAATGTTTAA-GCCCTCTAACTAGTA-GTGACATGCATCATGTTCCTATCCTATTGTTAGTCAAATTTTATACATGGTTGCCTCTTACACAGTCATATAACATATATGACTATAATCTTACTCACTGCAACTTTAATAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGCATGAAATCGTTGTTTTTGATGATATTTT-----CAGCATGGGCCTCTCCCAAGTAAATAATAT--TTAT------------AATGA-TTTATCGAAAATTCTGGATCTGATATTTTTAAATAATGTCGTTCATAGTAAAGTAGAAATTTGTAATG-TACCATTAAGTCCGC-GTGATATGCACCATAAGCCATTGTTGATACACATTGAATTTTATAGTTTTCTGCCTTCCCCCTCACCTATTTCTTATTATCACTTTAATGAGTCTAAC----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................TGATATTTT-----CAGCATGGGCCTCTCCC............................................................................................................................................................................................................................................2650.201010000
.......................GATATTTT-----CAGCATGGGCCTCTCCCAAG.........................................................................................................................................................................................................................................2850.201010000
CGCATGAAATCGTTGTTTTTGATGATA......................................................................................................................................................................................................................................................................2760.171001000
....TGAAATCGTTGTTTTTGATGATATTT...................................................................................................................................................................................................................................................................2660.171010000
..........................................................................................................................................................................................................................TAGTTTTCTGCCTTCCCCCTCACCTA.............................................26200.051100000
............................................................TAATAT--TTAT------------AATGA-TTTATCGAAAAT...........................................................................................................................................................................................27200.051100000
.................................................................................................................................................................................................CATTGTTGATACACATTGAATTTTATAG....................................................................28200.051010000
...................................................................................................................TTTTTAAATAATGTCGTTCA..........................................................................................................................................................20200.051010000
......................................................................................TGA-TTTATCGAAAATTCTGGATCT..................................................................................................................................................................................24200.051100000
.......................................................................................................................................................................................................................TTATAGTTTTCTGCCTTCCCCCTCACC...............................................27200.051100000
.....................................................................................................................................................................................................................TTTTATAGTTTTCTGCCTTCCCCCTC..................................................26200.051100000
.......................................................................................................................................................................................................................TTATAGTTTTCTGCCTTCCCCCTCA.................................................25200.051100000
................................................................................................................ATATTTTTAAATAATGTCGTT............................................................................................................................................................21200.051000010
......................................................................................TGA-TTTATCGAAAATTCTGGATCTGATA..............................................................................................................................................................................28200.051100000
........................................................................................................................................................................................................................TATAGTTTTCTGCCTTCCCCCTCAC................................................25200.051010000
.....................................................................................................................................................................................................................TTTTATAGTTTTCTGCCTTCCCC.....................................................23200.051010000
droBip1
GTCATGAAATTGTAGTTTTAGATGATATTTT-----TAGTCTGGGCCTCTCCCAAGTAAATAATAT--TTTT------------AATGA-TTTATCCAAAATTCTTGATCTTAAATTTTTAAATAATTTGGTTAATAGTAAAGTAGAATTATGCAATG-TACCATTAAGTCCTT-GTGATATGCACCACAAGCCATTGGTAATTAATATTGAGTTTTATAGTTTTCTGCCTTCTGCTTCTCCAATTCCATATTATCATCTGAATGATACTAAC----------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCAGGAAATCTTGGTCATAGATGAGCTTTT-----CAGTCTCGGTCTGGTCCAGATAAATCACGT--ATTT------------AATAA-ATTACATAAACTTCTAGATCTAATTTTTGTAAGTCAAGATCTGAACTTAAATCTAGTTTGCAGTAGTA-ATCCTATTTCTGAGT-GCGATGCCCACCACCAGCCCTTACTGATTTCATTATTTACTTATATATTTCCGCCAAGCACATATTCATTGT---------ACATTAATATGAACAAT----------------SizeHit CountTotal NormTotal
No Reads
droEle1
CACATGATATTATTGTTTTCGATGATTGTTA-----TAGTATGGGCCTCACCCAAATAAATTATGT--CTTT------------AATGA-TTTGCATAGGCTACTAGATTTAATATTCATCAATTCTATTGTTCATTCCTCGGTAAGCCTTGCTGAAT-TTAGTATTTCCAGTT-GTGATGTTCATCATAAGCCCTTATGCTTTAATATTGAATTTTATAATTTCTTACCTGTTGTTAACTTTATTCCTATGTATAATTTTGATAATGCCAGC----------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACATGAAATTATTGTCTTTGGTGTTTGTTCTATGCTAGTATGGGCCTAACTCAAATAAATAATAT--TTTT------------AACAG-TTTATATAAGTTACTCGAATTAATATTTTGTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CACACGAGATTCTTTTCATCGATGATAGTTT-----CAGTATGGGCTTAATACAAGTCAATAACAT--ATTC------------AATAA-CTTACATAAAATTTTAGACTTAGTATTCCTTAGCGCTGATATTAACTTTTCTTTAGTCCAATGTAGTT-CACCTATAAGCAATT-GTGATATCCATCATAGACCATTGCTACTAGGTATAAACTTTTACAGTTTTGCGCCTTCAGCTGAATATTCACCTAGATTTATTTTCAATGAAACCAGC----------------SizeHit CountTotal NormTotal
No Reads
droTak1
CACATGAAATTATTGTCATTGATGATTGTTA-----TAGTATGGGCCTCACCCAAATAAATAATAT--CTTT-----------TAATGATTTTGCATAGGCTACTAGATTTAATTTTCATCAATTCGATTGTTCATTCCTCGGTAAGCCTTGCTGAAT-ATACTATTTCTAATT-GTGATTCTCATCATAAACCAATTTGCTTTAATATTGAATTTTATAACTTTTTACCAACAGTTAATGTAGTTCCTATGTATAACTTTAATGATTCCAGC----------------SizeHit CountTotal NormTotal
No Reads
droSec2
CTCATGAATTTATTTTTATTGATGATTTTTA-----TAGCATGGGCCTCACCCAAATTAATAATGT--TTTC------------AAAGT-TTACCGCAAGTTACTTGATTTAATTTATAGCAGTCCTGTTTTAG----CTCAATTGTTCTGAACGAAT-TTACTAATTCAGGCTGGTGATGTACATTACAAGCTATTAT------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CT-----------TGTTATTGATGATTTTTA-----TAGAATGGGCATCACCCAAATGTTTCAAATGTTTTC------------AATGT-TTCGCGCAAGTTACTTAATTTACTTTATACCAGTTCTGTTCATAATTCCTCAATTGCTATCGCCAAATTTTACCATTTCAGGTT-GTGATATACATCACCTTACGTTACGTATTAACATTGAGTTTCTATATTTTCTAAAGTTTGTTAATGTAGTTCAAAAATTTAATCTAAGT-ACTTTAAC----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................TAAAGTTTGTTAATGTAGTTC..........................................2111.00100100000000
droEre2
CTCATGAAATTATTGTTATTGATGATTTTTA-----TAGTATGGGCCTCATCCAAATTAATAATGT--TTTC------------AATGT-TTCGCGCAAGTTACTTGATTTAATCTATACTAGTTCTGTTTCTAACTCATCAATTGCTATCGCCGAAT-TTATTATTTCCAGTT-GTGATGTAAATCACCAGCCATTATGTTTTAACATTGAGTTTTTGCATTTTCTACCATCTGTTATTAAAATTCCTAAATTTAA--------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................TTCCAGTT-GTGATGTAAATCACCAGC................................................................................................2611.0011000000
dp5
CGAACGAGATTCTTTTCCTAGATGACTGTTT-----TCGTATGGGCTTATCCCAAGTAAATAATGT--TTTT------------AATAG-GCTAAATAAGATTCTAGACTTAATTTTTGTTAGTTCGGATATAGATTGCCATGTTACATGTTGCGAAC-TCCCTATCGCGGAAT-GCGACATGCATCATATGCCGTTGGAATACTTAGTCAATTTCCATTTTTATTCGCCCTGGGCGGAACCATTTTATGAATGCTTCTTTTCT-AGTGTAAG----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................TTCGGATATAGATTGCCATGTTACATG...........................................................................................................................................2763.332001910000000
.............................................................................................................................................................................................................TAGTCAATTTCCATTTTTATTCGCCC..........................................................2683.002402130000000
.......................................................................................................................................................TGCGAAC-TCCCTATCGCGGAAT-GCGACA............................................................................................................2812.0020200000000
.....................................................AAGTAAATAATGT--TTTT------------AATAG-G......................................................................................................................................................................................................2371.57110500000600
...........................................................................................................................TTCGGATATAGATTGCCATGTTAC..............................................................................................................................................24111.551701000100600
.....................................................................................................................TGTTAGTTCGGATATAGATTGCC.....................................................................................................................................................23141.432002000000000
.....................................................................................................................TGTTAGTTCGGATATAGATTGCCATG..................................................................................................................................................26121.421701700000000
.....................................................AAGTAAATAATGT--TTTT------------AATAG-GC.....................................................................................................................................................................................................2471.1480800000000
.....................................................................................................................TGTTAGTTCGGATATAGATTGCCA....................................................................................................................................................24141.071501500000000
............................................................................................................................................................................................TATGCCGTTGGAATACTTAGTCAATT...........................................................................2611.0010100000000
................................................................................................................................................TACATGTTGCGAAC-TCCCTATCGCGGA.....................................................................................................................2711.0010100000000
................................................................................................................................................TACATGTTGCGAAC-TCCCTATCGCGG......................................................................................................................2611.0010100000000
...........................................................................................................................TTCGGATATAGATTGCCATGTTACA.............................................................................................................................................2571.0070700000000
............................................................................................................................................................................................TATGCCGTTGGAATACTTAGTCAA.............................................................................2411.0010100000000
.....................................................................................................................................................................................TGCATCATATGCCGTTGGAATACTTAGTC...............................................................................2911.0010100000000
.....................................................................................................................TGTTAGTTCGGATATAGATTGCCATGT.................................................................................................................................................27120.831001000000000
..........................TGTTT-----TCGTATGGGCTTATCCCAAGT........................................................................................................................................................................................................................................2630.6720000000200
............................................................................................................................................................................................................TTAGTCAATTTCCATTTTTATTCGCCC..........................................................2770.5740400000000
.......................................................................................................................TTAGTTCGGATATAGATTGCCATG..................................................................................................................................................24130.5470700000000
...........................................................................................................................TTCGGATATAGATTGCCATGTTACATGT..........................................................................................................................................2860.5030300000000
.............................................................................................................................................................................................................TAGTCAATTTCCATTTTTATTCGCC...........................................................2580.5040400000000
......................................................................................................TCTAGACTTAATTTTTGTTAGTTCGG.................................................................................................................................................................2690.4440000000400
.........TTCTTTTCCTAGATGACTGTTT-----TCGTA........................................................................................................................................................................................................................................................2730.3310100000000
................................................................GT--TTTT------------AATAG-GCTAAATAAG.............................................................................................................................................................................................2160.3320000000200
...........................................................................................................................TTCGGATATAGATTGCCATGTTACATGA..........................................................................................................................................2860.3320000000200
...............TCCTAGATGACTGTTT-----TCGTATGGGC...................................................................................................................................................................................................................................................2630.3310100000000
...............TCCTAGATGACTGTTT-----TCGTATGGG....................................................................................................................................................................................................................................................2530.3310100000000
...............TCCTAGATGACTGTTT-----TCGTATG......................................................................................................................................................................................................................................................2330.3310100000000
................CCTAGATGACTGTTT-----TCGTATGG.....................................................................................................................................................................................................................................................2330.3310100000000
.............................................................................................................................CGGATATAGATTGCCATGTTACATG...........................................................................................................................................2560.3320200000000
............................................................................................................................TCGGATATAGATTGCCATGTTACATG...........................................................................................................................................2660.3320200000000
.....................................................................................................................TGTTAGTTCGGATATAGATTGCCAT...................................................................................................................................................25130.3140300001000
.......................................................................................................................TTAGTTCGGATATAGATTGCCATGT.................................................................................................................................................25130.3140400000000
.....................................................................................................................TGTTAGTTCGGATATAGATTGC......................................................................................................................................................22140.2940400000000
................................................................................................TAAGATTCTAGACTTAATTTTTGT.........................................................................................................................................................................2470.2920020000000
...........................................................................................................................TTCGGATATAGATTGCCATGTTACAT............................................................................................................................................2670.2920100000100
.............................................................................................................TTAATTTTTGTTAGTTCGGATATAGA..........................................................................................................................................................26110.2730000000300
...................................................................................................................................TAGATTGCCATGTTACATGTTGC.......................................................................................................................................2380.2520200000000
.................................................................................................................................TATAGATTGCCATGTTACATGTTGC.......................................................................................................................................2580.2520000000200
..............................................................................................................................................................................................................AGTCAATTTCCATTTTTATTCGCC...........................................................2480.2520200000000
..............................................................................................................................................................................................................AGTCAATTTCCATTTTTATTCGCCC..........................................................2580.2520200000000
...........................................................................................................................TTCGGATATAGATTGCCATGTTA...............................................................................................................................................23130.2330300000000
.........TTCTTTTCCTAGATGACTGTT...................................................................................................................................................................................................................................................................2150.2010100000000
...............................................................TGT--TTTT------------AATAG-GCTAAATAAGATT..........................................................................................................................................................................................2550.2010100000000
............................................................TAATGT--TTTT------------AATAG-GCTAAATAAG.............................................................................................................................................................................................2550.2010100000000
........................................................................................................................................TGCCATGTTACATGTTGCGAAC-TCCC..............................................................................................................................2660.1710100000000
........................................................................................................................................TGCCATGTTACATGTTGCGAAC-TCC...............................................................................................................................2560.1710100000000
.......................................................................................................................................TTGCCATGTTACATGTTGCGAAC-TCC...............................................................................................................................2660.1710100000000
........................................................................................................................................TGCCATGTTACATGTTGCGAAC-TC................................................................................................................................2460.1710100000000
.......................................................................................................................................TTGCCATGTTACATGTTGCGAAC-TCCC..............................................................................................................................2760.1710100000000
.........................................................................................................................................GCCATGTTACATGTTGCGAAC-TCCC..............................................................................................................................2560.1710100000000
.....................................................................................................................................................................................................................TTCCATTTTTATTCGCCCTGGGCGGAA.................................................2760.1710100000000
..................................................................................................................TTTTGTTAGTTCGGATATAGATTGC......................................................................................................................................................25130.1520000000200
...........................................................................................................................TTCGGATATAGATTGCCATGTT................................................................................................................................................22130.1520100000100
...........................................................................................................................TTCGGATATAGATTGCCATGT.................................................................................................................................................21130.1520200000000
........................................................................................................................TAGTTCGGATATAGATTGCCATG..................................................................................................................................................23130.1520200000000
....................................................................................................................TTGTTAGTTCGGATATAGATTGCC.....................................................................................................................................................24130.1520200000000
.........................................................................................................................................GCCATGTTACATGTTGCGAAC-T.................................................................................................................................2270.1410100000000
.................................................................................................AAGATTCTAGACTTAATTTTTGTTA.......................................................................................................................................................................2570.1410100000000
..........................................................................................................................................CCATGTTACATGTTGCGAAC-TC................................................................................................................................2270.1410100000000
......................................................................................................................................................................................................................TCCATTTTTATTCGCCCTGGGC.....................................................2270.1410100000000
............................................................................................................................................................................................................TTAGTCAATTTCCATTTTTATTC..............................................................2370.1410100000000
............................................................................................................................................................................................................TTAGTCAATTTCCATTTTTATTCGC............................................................2570.1410100000000
............................................................................................................................TCGGATATAGATTGCCATGTTACA.............................................................................................................................................2470.1410100000000
......................................................................................................................................................................................................................TCCATTTTTATTCGCCCTGG.......................................................2070.1410100000000
.....................................................AAGTAAATAATGT--TTTT------------AATAG-GCT....................................................................................................................................................................................................2570.1410000000100
..............................................................................................................TAATTTTTGTTAGTTCGGATA..............................................................................................................................................................21150.1320000000200
...................................................................................................................................TAGATTGCCATGTTACATGTTGCGA.....................................................................................................................................2580.1310100000000
.............................................................................................................................................................................................................TAGTCAATTTCCATTTTTATTCGCCCT.........................................................2780.1310100000000
................................................................................................................................................................................................................TCAATTTCCATTTTTATTCGCCC..........................................................2380.1310010000000
............................................................................................TAAATAAGATTCTAGACTTA.................................................................................................................................................................................2080.1310100000000
..........................................................................................................................................CCATGTTACATGTTGCGAAC-..................................................................................................................................2080.1310000100000
.............................................................................................................................................................................................................TAGTCAATTTCCATTTTTATTCGC............................................................2480.1310100000000
.....................................................................................................TTCTAGACTTAATTTTTGTTAGT.....................................................................................................................................................................2390.1110100000000
.......................................................................................................CTAGACTTAATTTTTGTTAG......................................................................................................................................................................20100.1010100000000
......................................................................................................TCTAGACTTAATTTTTGTTAGT.....................................................................................................................................................................22100.1010010000000
......................................................................................................TCTAGACTTAATTTTTGTTA.......................................................................................................................................................................20100.1010100000000
......................................................................................................TCTAGACTTAATTTTTGTT........................................................................................................................................................................19100.1010100000000
............................................................................................................................TCGGATATAGATTGCCATGTTAC..............................................................................................................................................23110.0910100000000
......................................................................................................................GTTAGTTCGGATATAGATTGCCATGT.................................................................................................................................................26120.0810100000000
........................................................................................................................TAGTTCGGATATAGATTGCCATGT.................................................................................................................................................24130.0810100000000
............................................................................................................................TCGGATATAGATTGCCATGTT................................................................................................................................................21130.0810100000000
.......................................................................................................................TTAGTTCGGATATAGATTGCCATGTT................................................................................................................................................26130.0810100000000
............................................................................................................................TCGGATATAGATTGCCATG..................................................................................................................................................19130.0810100000000
....................................................................................................................TTGTTAGTTCGGATATAGATTGC......................................................................................................................................................23130.0810100000000
....................................................................................................................................................................................ATGCATCATATGCCGTTGGA.........................................................................................20130.0810100000000
.....................................................................................................................TGTTAGTTCGGATATAGATTGCA.....................................................................................................................................................23140.0710100000000
......................................................................................................................GTTAGTTCGGATATAGATTGCCA....................................................................................................................................................23140.0710100000000
.......................................................................................................................TTAGTTCGGATATAGATTGCC.....................................................................................................................................................21150.0710100000000
.....................................................................................................................TGTTAGTTCGGATATAGATT........................................................................................................................................................20170.0610100000000
droPer2
CGAACGAGATTCTTTTCCTAGACGACTGTTT-----TAGTATGGGCCTATCCCAAGTAAATAATTG--TTTTAATAAGCTGTTTAATAA-GCTAAATAAGATTCTAGACTTAATTTTTGTTAGTTCGGATATAGATTGCCATGTTACATGTTGCGAAC-TCCCCATCGCGGAAT-ATGACATGCATCATATGCCGTTGGAATTCTTAGTAAATTTCCATTGTTATTCGCCCTGGGCGGAACCATTTTATGAATGCTTCTTTTCT-AGTGTAAG----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................TTAGTTCGGATATAGATTGCCATGT.................................................................................................................................................25112.18240210003
.............................................................................................................................................................C-TCCCCATCGCGGAAT-ATGACATGCA........................................................................................................2612.002020000
........................................................................................................................TAGTTCGGATATAGATTGCCATGT.................................................................................................................................................24121.50180171000
.....................................................................................................................................................................................................................................................TTATGAATGCTTCTTTTCT-AGTG....................2391.009090000
...............TCCTAGACGACTGTTT-----TAGTATGGGCC..................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................TTAGTTCGGATATAGATTGCCATG..................................................................................................................................................24110.829090000
...............TCCTAGACGACTGTTT-----TAGTATGGG....................................................................................................................................................................................................................................................2520.501010000
........................................................................................................................TAGTTCGGATATAGATTGCCATG..................................................................................................................................................23120.334040000
...................................................................................................................................................................................................................................................TTTTATGAATGCTTCTTTTCT-AGTG....................2540.251010000
......................................................................................................................GTTAGTTCGGATATAGATTGCCATGTTA...............................................................................................................................................28110.182200000
................................................................................................................................................TACATGTTGCGAAC-TCCCCATCGCG.......................................................................................................................2580.131010000
....................................................................................................................................................TGTTGCGAAC-TCCCCATCGCGGAA....................................................................................................................2480.131010000
................................................................................................................................................TACATGTTGCGAAC-TCCCCATCGCGGAA....................................................................................................................2880.131010000
................................................................................................................................................TACATGTTGCGAAC-TCCCCATCGCGG......................................................................................................................2680.131010000
.....................................................................................................................................................................................................................................................TTATGAATGCTTCTTTTCT-AGTGT...................2490.111010000
......................................................................................................................................................................................................................................................TATGAATGCTTCTTTTCT-AGTG....................2290.111010000
.......................................................................................................................TTAGTTCGGATATAGATTGCCATGTTAC..............................................................................................................................................28100.101010000
................................................................................................................................................TACATGTTGCGAAC-TCCCCATC..........................................................................................................................22100.101010000
.......................................................................................................................TTAGTTCGGATATAGATTGCCATGTT................................................................................................................................................26110.091010000
.......................................................................................................................TTAGTTCGGATATAGATTGCCA....................................................................................................................................................22120.081010000
.........................................................................................................................AGTTCGGATATAGATTGCCATGT.................................................................................................................................................23120.081010000
droVir3
CATACGAAATTGTTGTAATTAATGAATTACG-----TAGTATGGGCTTATACCAAATTAATATAAT--TTTC------------AAGCA-ATTGCATAAAATATTAGATCTAATACTTCTAAATTTAGACGTTAATTTTAACTAAGGTAAATGTTTAA-GCCCTCTAACTAGTA-GTGACATGCATCATGTTCCTATCCTATTGTTAGTCAAATTTTATACATGGTTGCCTCTTACACAGTCATATAACATATATGACTATAATCTTACTCACTGCAACTTTAATAAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads

Generated: 05/18/2015 at 12:36 AM